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source: trunk/MagicSoft/Mars/mjobs/MJCalibrateSignal.cc@ 6955

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Last change on this file since 6955 was 6953, checked in by tbretz, 19 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	!
20	! Copyright: MAGIC Software Development, 2000-2004
21	!
22	!
23	\* ======================================================================== */
24
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibrateSignal
28	//
29	// This class is reading the output written by callisto. It calibrates
30	// signal and time.
31	//
32	// The signal and time extractors are read from the callisto-output. In
33	// pricipal you could overwrite these default using the resource file,
34	// but this is NOT recommended!
35	//
36	/////////////////////////////////////////////////////////////////////////////
37	#include "MJCalibrateSignal.h"
38
39	#include <TEnv.h>
40	#include <TFile.h>
41
42	#include "MLog.h"
43	#include "MLogManip.h"
44
45	#include "MDirIter.h"
46	#include "MRunIter.h"
47	#include "MParList.h"
48	#include "MTaskList.h"
49	#include "MEvtLoop.h"
50
51	#include "MStatusDisplay.h"
52
53	#include "MGeomCam.h"
54	#include "MHCamEvent.h"
55	//#include "MHCamEventTH.h"
56	#include "MPedestalCam.h"
57	#include "MBadPixelsCam.h"
58	#include "MArrivalTimeCam.h"
59
60	#include "MCalibrationQECam.h"
61	#include "MCalibrationBlindCam.h"
62	#include "MCalibrationChargeCam.h"
63	#include "MCalibrationRelTimeCam.h"
64	#include "MCalibrationChargePINDiode.h"
65	#include "MCalibrationHiLoCam.h"
66	#include "MCalibrationPulseTimeCam.h"
67	#include "MCalibrationPatternDecode.h"
68
69	#include "MCalibrationChargeCalc.h"
70	#include "MCalibrationRelTimeCalc.h"
71
72	#include "MCalibrationIntensityChargeCam.h"
73	#include "MCalibrationIntensityBlindCam.h"
74	#include "MCalibrationIntensityRelTimeCam.h"
75	#include "MCalibrationIntensityQECam.h"
76	#include "MBadPixelsIntensityCam.h"
77
78	#include "MHCalibrationChargeCam.h"
79	#include "MHCalibrationChargeBlindCam.h"
80	#include "MHCalibrationChargePINDiode.h"
81	#include "MHCalibrationRelTimeCam.h"
82	#include "MHCalibrationPulseTimeCam.h"
83	#include "MHCalibrationHiLoCam.h"
84	#include "MHCamera.h"
85
86	#include "MCalibCalcFromPast.h"
87
88	#include "MReadReports.h"
89	#include "MReadMarsFile.h"
90	#include "MRawFileRead.h"
91	#include "MContinue.h"
92	#include "MTriggerPatternDecode.h"
93	#include "MFTriggerPattern.h"
94	#include "MGeomApply.h"
95	//#include "MMcPedestalCopy.h"
96	#include "MPointingPosCalc.h"
97	#include "MPointingPosInterpolate.h"
98	#include "MPedCalcFromLoGain.h"
99	#include "MExtractor.h"
100	#include "MExtractTimeAndCharge.h"
101	#include "MExtractPINDiode.h"
102	#include "MExtractBlindPixel.h"
103	#include "MFCosmics.h"
104	#include "MTaskEnv.h"
105	#include "MCalibrateData.h"
106	#include "MCalibrateRelTimes.h"
107	#include "MBadPixelsMerge.h"
108	#include "MBadPixelsCalc.h"
109	#include "MBadPixelsTreat.h"
110	#include "MFillH.h"
111	#include "MWriteRootFile.h"
112
113	ClassImp(MJCalibrateSignal);
114
115	using namespace std;
116
117	// --------------------------------------------------------------------------
118	//
119	// Default constructor.
120	//
121	// Sets:
122	// - fIsInterlaced to kTRUE
123	// - fIsRelTimesUpdate to kFALSE
124	// - fIsHiLoCalibration to kFALSE
125	// - fPulsePosCheck to kTRUE
126	//
127	MJCalibrateSignal::MJCalibrateSignal(const char name, const char title)
128	: fExtractor(0), fIsInterlaced(kTRUE), fIsRelTimesUpdate(kFALSE)
129	{
130	fName = name ? name : "MJCalibrateSignal";
131	fTitle = title ? title : "Tool to calibrate data";
132
133	SetPulsePosCheck();
134	//fCruns = NULL;
135	}
136
137	MJCalibrateSignal::~MJCalibrateSignal()
138	{
139	if (fExtractor)
140	delete fExtractor;
141	}
142
143	void MJCalibrateSignal::SetExtractor(const MExtractor *ext)
144	{
145	if (fExtractor)
146	delete fExtractor;
147
148	fExtractor = ext ? (MExtractor*)ext->Clone() : NULL;
149	}
150
151	const char* MJCalibrateSignal::GetInputFile() const
152	{
153	const TString name(GetInputFileName());
154	if (name.IsNull())
155	return "";
156
157	return Form("%s/%s", fPathIn.Data(), name.Data());
158	}
159
160	const char* MJCalibrateSignal::GetInputFileName() const
161	{
162
163	if (fSequence.IsValid())
164	return Form("calib%08d.root", fSequence.GetSequence());
165
166	// if (!fCruns)
167	return "";
168
169	// return Form("%s-F1.root", (const char*)fCruns->GetRunsAsFileName());
170	}
171
172	Bool_t MJCalibrateSignal::WriteResult(TObjArray &cont)
173	{
174	if (IsNoStorage())
175	return kTRUE;
176
177	const TString name(Form("signal%08d.root", fSequence.GetSequence()));
178	return WriteContainer(cont, name);
179	}
180
181	Bool_t MJCalibrateSignal::ReadCalibration(TObjArray &l, MBadPixelsCam &cam, MExtractor* &ext2, MExtractor* &ext3, TString &geom) const
182	{
183
184	const TString fname = GetInputFile();
185
186	*fLog << inf << "Reading from file: " << fname << endl;
187
188	TFile file(fname, "READ");
189	if (!file.IsOpen())
190	{
191	*fLog << err << dbginf << "ERROR - Could not open file " << fname << endl;
192	return kFALSE;
193	}
194
195	TObject *o = file.Get("ExtractSignal");
196	if (o && !o->InheritsFrom(MExtractor::Class()))
197	{
198	*fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
199	return kFALSE;
200	}
201	ext3 = o ? (MExtractor*)o->Clone() : NULL;
202
203	o = file.Get("ExtractTime");
204	if (o && !o->InheritsFrom(MExtractor::Class()))
205	{
206	*fLog << err << dbginf << "ERROR - ExtractTime read from " << fname << " doesn't inherit from MExtractor!" << endl;
207	return kFALSE;
208	}
209	ext2 = o ? (MExtractor*)o->Clone() : NULL;
210	if (!ext3 && !ext2)
211	{
212	*fLog << err << dbginf << "ERROR - Neither ExtractSignal nor ExrtractTime found in " << fname << "!" << endl;
213	return kFALSE;
214	}
215
216	o = file.Get("MGeomCam");
217	if (o && !o->InheritsFrom(MGeomCam::Class()))
218	{
219	*fLog << err << dbginf << "ERROR - MGeomCam read from " << fname << " doesn't inherit from MGeomCam!" << endl;
220	return kFALSE;
221	}
222	geom = o ? o->ClassName() : "";
223
224	TObjArray cont(l);
225	cont.Add(&cam);
226	return ReadContainer(cont);
227	}
228	/*
229	Bool_t MJCalibrateSignal::ReadExtractorCosmics(MExtractor* &ext1) const
230	{
231
232	const TString fname = Form("pedy%08d.root",fSequence.GetSequence());
233
234	*fLog << inf << "Reading from file: " << fname << endl;
235
236	TFile file(fname, "READ");
237	if (!file.IsOpen())
238	{
239	*fLog << warn << "Could not find or open file " << fname << endl;
240	return kFALSE;
241	}
242
243	TObject *o = file.Get("ExtractSignal");
244	if (o && !o->InheritsFrom(MExtractor::Class()))
245	{
246	*fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
247	return kFALSE;
248	}
249	if (o)
250	{
251	delete ext1;
252	ext1 = (MExtractor*)o->Clone();
253	}
254	else
255	*fLog << warn << "No signal extractor found in " << fname << endl;
256
257	file.Close();
258	return kTRUE;
259	}
260	*/
261	// --------------------------------------------------------------------------
262	//
263	// MJCalibration allows to setup several option by a resource file:
264	// MJCalibrateSignal.RawData: yes,no
265	//
266	// For more details see the class description and the corresponding Getters
267	//
268	Bool_t MJCalibrateSignal::CheckEnvLocal()
269	{
270	SetInterlaced(GetEnv("Interlaced", fIsInterlaced));
271	SetRelTimesUpdate(GetEnv("RelTimesUpdate", fIsRelTimesUpdate));
272
273	return MJCalib::CheckEnvLocal();
274	}
275
276	Bool_t MJCalibrateSignal::ProcessFile(MPedestalCam &pedcamab, MPedestalCam &pedcambias,
277	MPedestalCam &pedcamextr)
278	{
279	if (!fSequence.IsValid())
280	{
281	if (!fRuns)
282	{
283	*fLog << err << "ERROR - Sequence invalid and no runs chosen!" << endl;
284	return kFALSE;
285	}
286
287	if (fRuns->GetNumRuns() != fRuns->GetNumEntries())
288	{
289	*fLog << err << "Number of files found doesn't match number of runs... abort."
290	<< fRuns->GetNumRuns() << " vs. " << fRuns->GetNumEntries() << endl;
291	return kFALSE;
292	}
293	*fLog << "Calibrate data from ";
294	*fLog << "Runs " << fRuns->GetRunsAsString() << endl;
295	*fLog << endl;
296	}
297
298	//if (!CheckEnv())
299	// return kFALSE;
300
301	CheckEnv();
302
303	// --------------------------------------------------------------------------------
304
305	*fLog << inf;
306	fLog->Separator(GetDescriptor());
307	*fLog << "Calculate calibrated data from runs ";
308	*fLog << fSequence.GetName() << endl;
309	*fLog << endl;
310
311	// --------------------------------------------------------------------------------
312
313	MDirIter iter;
314	if (fSequence.IsValid())
315	{
316	const Int_t n0 = fSequence.SetupDatRuns(iter, fPathData, IsUseRawData());
317	const Int_t n1 = fSequence.GetNumDatRuns();
318	if (n0==0)
319	{
320	*fLog << err << "ERROR - No input files of sequence found!" << endl;
321	return kFALSE;
322	}
323	if (n0!=n1)
324	{
325	*fLog << err << "ERROR - Number of files found (" << n0 << ") doesn't match number of files in sequence (" << n1 << ")" << endl;
326	if (fLog->GetDebugLevel()>4)
327	{
328	*fLog << dbg << "Files which are searched:" << endl;
329	iter.Print();
330	}
331	return kFALSE;
332	}
333	}
334
335	// Read File
336	MCalibrationIntensityChargeCam ichcam;
337	MCalibrationIntensityQECam iqecam;
338	MCalibrationIntensityBlindCam iblcam;
339	MCalibrationIntensityRelTimeCam itmcam;
340	MBadPixelsIntensityCam ibdcam;
341
342	MHCalibrationChargeCam hchacam;
343	MHCalibrationChargeBlindCam hbndcam;
344	MHCalibrationChargePINDiode hpndiod;
345	MHCalibrationRelTimeCam hrelcam;
346
347	hchacam.SetOscillations(kFALSE);
348	hbndcam.SetOscillations(kFALSE);
349	hrelcam.SetOscillations(kFALSE);
350
351	MCalibrationChargeCam calcam;
352	MCalibrationQECam qecam;
353	MCalibrationBlindCam bndcam;
354	MCalibrationChargePINDiode pind;
355	MCalibrationRelTimeCam tmcam;
356	MCalibrationHiLoCam hilcam;
357	MCalibrationPulseTimeCam pulcam;
358
359	MBadPixelsCam badpix;
360
361	TObjArray interlacedcont;
362	if (fIsInterlaced)
363	{
364	interlacedcont.Add(&ichcam);
365	interlacedcont.Add(&iqecam);
366	interlacedcont.Add(&iblcam);
367	interlacedcont.Add(&itmcam);
368	interlacedcont.Add(&ibdcam);
369	interlacedcont.Add(&hchacam);
370	if (IsUseBlindPixel())
371	interlacedcont.Add(&hbndcam);
372	if (IsUsePINDiode())
373	interlacedcont.Add(&hpndiod);
374	if (fIsRelTimesUpdate)
375	interlacedcont.Add(&hrelcam);
376	}
377
378	MExtractor *extractor1=fExtractor;
379	MExtractor *extractor2=0;
380	MExtractor *extractor3=0;
381	TString geom;
382
383	TObjArray calibcont;
384	calibcont.Add(&calcam);
385	calibcont.Add(&qecam);
386	calibcont.Add(&bndcam);
387	calibcont.Add(&pind);
388	calibcont.Add(&tmcam);
389
390	if (!ReadCalibration(calibcont, badpix, extractor2, extractor3, geom))
391	return kFALSE;
392
393	*fLog << all;
394	if (!geom.IsNull())
395	*fLog << inf << "Camera geometry found in file: " << geom << endl;
396	else
397	*fLog << inf << "No Camera geometry found using default <MGeomCamMagic>" << endl;
398
399	if (extractor3)
400	{
401	*fLog << underline << "Signal Extractor found in calibration file" << endl;
402	extractor3->Print();
403	*fLog << endl;
404	}
405	else
406	*fLog << inf << "No Signal Extractor: ExtractSignal in file." << endl;
407
408
409	if (extractor1)
410	{
411	*fLog << underline << "Modified Signal Extractor set by user." << endl;
412	extractor1->Print();
413	*fLog << endl;
414	}
415	else
416	{
417	*fLog << inf << "No modified Signal Extractor set by user... using ExtractSignal." << endl;
418	extractor1 = extractor3 ? (MExtractor*)extractor3->Clone() : 0;
419	}
420
421	if (extractor2)
422	{
423	*fLog << underline << "Time Extractor found in calibration file" << endl;
424	extractor2->Print();
425	*fLog << endl;
426	}
427	else
428	*fLog << inf << "No Time Extractor: ExtractTime in file." << endl;
429
430	// This is necessary for the case in which it is not in the files
431	MBadPixelsCam badcam;
432
433	// Setup Parlist
434	MParList plist;
435	plist.AddToList(this); // take care of fDisplay!
436	plist.AddToList(&badcam);
437	plist.AddToList(&hilcam);
438	plist.AddToList(&calibcont); // Using AddToList(TObjArray *)
439	plist.AddToList(&interlacedcont); // Using AddToList(TObjArray *)
440	plist.AddToList(&pulcam);
441
442	// Setup Tasklist
443	MTaskList tlist;
444	plist.AddToList(&tlist);
445
446	MReadReports readreal;
447	readreal.AddTree("Events", "MTime.", kTRUE);
448	readreal.AddTree("Trigger");
449	readreal.AddTree("Camera");
450	readreal.AddTree("Drive");
451	readreal.AddTree("CC");
452	readreal.AddTree("Currents");
453
454	MReadMarsFile readmc("Events");
455	readmc.DisableAutoScheme();
456
457	MRawFileRead rawread(NULL);
458
459	MRead *read = 0;
460	switch (GetDataFlag())
461	{
462	case kIsUseRawData: read = &rawread; break;
463	case kIsUseMC: read = &readmc; break;
464	case kIsUseRootData: read = &readreal; break;
465	}
466	read->AddFiles(fSequence.IsValid() ? iter : *fRuns);
467
468	const TString fname(Form("%s{s/_D_/_Y_}{s/.raw$/.root}", fPathOut.Data()));
469
470
471	// Skips MC which have no contents. This are precisely the
472	// events which fullfilled the MC Lvl1 trigger and an
473	// arbitrary cut (typically at 50phe) to speed up simulation
474	MContinue contmc("MRawEvtData.GetNumPixels<0.5", "ContEmptyMC");
475
476	MPointingPosInterpolate pextr;
477	pextr.AddFiles(&iter);
478
479	MGeomApply apply; // Only necessary to create geometry
480	if (!geom.IsNull())
481	apply.SetGeometry(geom);
482	MBadPixelsMerge merge(&badpix);
483
484	// Make sure that pedcamab has the correct name
485	pedcamab.SetName("MPedestalFundamental");
486	pedcamextr.SetName("MPedestalFromExtractorRndm");
487	pedcambias.SetName("MPedestalFromExtractor");
488	plist.AddToList(&pedcamextr);
489	plist.AddToList(&pedcambias);
490	plist.AddToList(&pedcamab);
491
492	MArrivalTimeCam timecam;
493	plist.AddToList(&timecam);
494
495	// Check for interleaved events
496	MCalibrationPatternDecode caldec;
497	MTriggerPatternDecode decode;
498
499	MFTriggerPattern ftp;
500	// ftp.RequireCalibration();
501	ftp.DenyCalibration();
502	ftp.DenyPedestal();
503	// ftp.DenyPinDiode();
504	ftp.SetInverted();
505	MContinue conttp(&ftp, "ContTrigPattern");
506	// --> tlist2
507
508	// Do signal and pedestal calculation
509	MPedCalcFromLoGain pedlo1("MPedCalcFundamental");
510	pedlo1.SetPedestalUpdate(kTRUE);
511	pedlo1.SetNamePedestalCamOut("MPedestalFundamental");
512
513	MPedCalcFromLoGain pedlo2("MPedCalcWithExtractorRndm");
514	pedlo2.SetPedestalUpdate(kTRUE);
515	pedlo2.SetRandomCalculation(kTRUE);
516	pedlo2.SetNamePedestalCamIn("MPedestalFundamental");
517	pedlo2.SetNamePedestalCamOut("MPedestalFromExtractorRndm");
518
519	MPedCalcFromLoGain pedlo3("MPedCalcWithExtractor");
520	pedlo3.SetPedestalUpdate(kTRUE);
521	pedlo3.SetRandomCalculation(kFALSE);
522	pedlo3.SetNamePedestalCamIn("MPedestalFundamental");
523	pedlo3.SetNamePedestalCamOut("MPedestalFromExtractor");
524
525	if (extractor1)
526	{
527	extractor1->SetPedestals(&pedcamab);
528
529	if (extractor1->InheritsFrom("MExtractTimeAndCharge"))
530	{
531	pedlo2.SetExtractor((MExtractTimeAndCharge*)extractor1);
532	pedlo3.SetExtractor((MExtractTimeAndCharge*)extractor1);
533	const Int_t win = ((MExtractTimeAndCharge*)extractor1)->GetWindowSizeHiGain();
534	pedlo1.SetExtractWindow(15, win);
535	pedlo2.SetExtractWindow(15, win/obsolete/);
536	pedlo3.SetExtractWindow(15, win/obsolete/);
537	}
538	else
539	{
540	// FIXME: How to get the fixed value 15 automatically?
541	const Int_t f = (Int_t)(15.5+extractor1->GetHiGainFirst());
542	const Int_t n = (Int_t)(15.5+extractor1->GetNumHiGainSamples());
543	pedlo1.SetExtractWindow(f, n);
544	pedlo2.SetExtractWindow(f, n);
545	pedlo3.SetExtractWindow(f, n);
546	}
547	}
548	if (extractor2)
549	extractor2->SetPedestals(&pedcamab);
550
551	if (extractor3)
552	extractor3->SetPedestals(&pedcamab);
553
554	MFCosmics fcosmics;
555	fcosmics.SetNamePedestalCam("MPedestalFundamental");
556	MContinue contcos(&fcosmics, "ContTrigEvts");
557	contcos.SetInverted();
558
559	//MMcPedestalCopy pcopy;
560	MTaskEnv taskenv1("ExtractSignal");
561	MTaskEnv taskenv2("ExtractTime");
562	MTaskEnv taskenv3("ExtractInterlaced");
563	taskenv1.SetDefault(extractor1);
564	taskenv2.SetDefault(extractor2);
565	taskenv3.SetDefault(extractor3);
566
567	//
568	// This is new calibration to photo-electrons, hard-coded
569	// as decided at the Wuerzburg software meeting 26.01.05
570	//
571	MCalibrateData calib;
572	calib.SetSignalType(MCalibrateData::kPhe);
573	calib.AddPedestal("Fundamental");
574	calib.AddPedestal("FromExtractor");
575	calib.AddPedestal("FromExtractorRndm");
576	calib.SetPedestalFlag(MCalibrateData::kEvent);
577	//----------------------------------------------------------
578
579	MExtractPINDiode pinext;
580	MExtractBlindPixel bldext;
581
582	MFTriggerPattern fcalib("CalibFilter");
583	fcalib.RequireCalibration();
584
585	MCalibrationChargeCalc chcalc;
586	MCalibrationRelTimeCalc recalc;
587	MCalibCalcFromPast pacalc;
588	chcalc.SetOutputFile("");
589	recalc.SetOutputFile("");
590
591	pinext.SetPedestals(&pedcamab);
592	bldext.SetPedestals(&pedcamab);
593	chcalc.SetPedestals(&pedcamextr);
594
595	pacalc.SetChargeCalc(&chcalc);
596	if (fIsRelTimesUpdate)
597	pacalc.SetRelTimeCalc(&recalc);
598	pacalc.SetCalibrate(&calib);
599
600	//
601	// Intensity Calibration histogramming
602	//
603	MFillH filpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
604	MFillH filbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
605	MFillH filcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
606	MFillH filtme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
607	MFillH filhil("MHCalibrationHiLoCam", "MExtractedSignalCam", "FillHiLoRatio");
608	MFillH filpul("MHCalibrationPulseTimeCam", "MRawEvtData", "FillPulseTime");
609
610	filpin.SetBit(MFillH::kDoNotDisplay);
611	filbnd.SetBit(MFillH::kDoNotDisplay);
612	filcam.SetBit(MFillH::kDoNotDisplay);
613	filtme.SetBit(MFillH::kDoNotDisplay);
614	filhil.SetBit(MFillH::kDoNotDisplay);
615	filpul.SetBit(MFillH::kDoNotDisplay);
616
617	MCalibrateRelTimes caltm;
618	MBadPixelsCalc bpcal;
619	MBadPixelsTreat treat;
620
621	bpcal.SetNamePedPhotCam("MPedPhotFromExtractor");
622	treat.AddNamePedPhotCam("MPedPhotFundamental");
623	treat.AddNamePedPhotCam("MPedPhotFromExtractor");
624	treat.AddNamePedPhotCam("MPedPhotFromExtractorRndm");
625	if (!extractor2 && !extractor1->InheritsFrom("MExtractTimeAndCharge"))
626	treat.SetProcessTimes(kFALSE);
627
628	MHCamEvent evt0(0, "PedFLG", "Fundamental Pedestal from Lo Gain;;P [cnts/sl]");
629	MHCamEvent evt1(2, "PedRmsFLG", "RMS from Extractor applied to ped.;;\\sigma_{p} [cnts/sl]");
630	MHCamEvent evt2(0, "Extra'd", "Extracted Signal;;S [cnts/sl]");
631	// MHCamEvent evt3(4, "PedPhot", "Calibrated Pedestal;;P [phe]");
632	MHCamEvent evt4(5, "PedRMS", "Calibrated RMS from Extractor applied to ped.;;\\sigma_{p} [phe]");
633	MHCamEvent evt5(0, "Interp'd", "Interpolated Signal;;S [phe]");
634	MHCamEvent evt6(2, "Unsuitable", "Fraction of unsuitable events per Pixel;;[1]");
635	MHCamEvent evt7(6, "Times", "Calibrated Arrival Time;;T [fadc sl]");
636	MHCamEvent evt8(0, "Conv", "Calibration Conv. Factors;;[phe/fadc cnts]");
637	MHCamEvent evt9(7, "PulsePos", "Pulse Position of cosmics (>15phe);;T"); //Calibration Conv. Factors;;[phe/fadc cnts]
638	/*
639	MHCamEventTH evt9(6, "PulsePos", "Pulse Position of cosmics"); //Calibration Conv. Factors;;[phe/fadc cnts]
640	evt9.SetNameThreshold("MCerPhotEvt");
641	evt9.SetThreshold(15);
642	*/
643	/*
644	evt0.EnableSqrtVariance();
645	evt1.EnableSqrtVariance();
646	evt2.EnableSqrtVariance();
647	// evt3.EnableVariance();
648	evt4.EnableSqrtVariance();
649	evt5.EnableSqrtVariance();
650	evt7.EnableSqrtVariance();
651	evt8.EnableSqrtVariance();
652	*/
653	MFillH fill0(&evt0, "MPedestalFundamental", "FillPedFLG");
654	MFillH fill1(&evt1, "MPedestalFromExtractorRndm", "FillPedRmsFLG");
655	MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtracted");
656	// MFillH fill3(&evt3, "MPedPhotFundamental", "FillPedPhot");
657	MFillH fill4(&evt4, "MPedPhotFromExtractorRndm", "FillPedRMS");
658	MFillH fill5(&evt5, "MSignalCam", "FillInterpolated");
659	MFillH fill6(&evt6, "MBadPixelsCam", "FillUnsuitable");
660	MFillH fill7(&evt7, "MSignalCam", "FillTimes");
661	MFillH fill8(&evt8, "MCalibConstCam", "FillConv");
662	MFillH fill9(&evt9, "MSignalCam", "FillPulse");
663
664	MTaskEnv fillflorian("FinalFantasy");
665	fillflorian.SetDefault();
666
667	// The second rule is for the case reading raw-files!
668	MWriteRootFile write(2, fname, fOverwrite?"RECREATE":"NEW");
669	// Run Header
670	write.AddContainer("MRawRunHeader", "RunHeaders");
671	write.AddContainer("MBadPixelsCam", "RunHeaders");
672	write.AddContainer("MGeomCam", "RunHeaders");
673	// Monte Carlo Headers
674	write.AddContainer("MMcRunHeader", "RunHeaders", kFALSE);
675	write.AddContainer("MMcFadcHeader", "RunHeaders", kFALSE);
676	write.AddContainer("MMcTrigHeader", "RunHeaders", kFALSE);
677	write.AddContainer("MMcConfigRunHeader", "RunHeaders", kFALSE);
678	write.AddContainer("MMcCorsikaRunHeader", "RunHeaders", kFALSE);
679	// Monte Carlo
680	write.AddContainer("MMcEvt", "Events", kFALSE);
681	write.AddContainer("MMcTrig", "Events", kFALSE);
682	// Data tree
683	write.AddContainer("MSignalCam", "Events");
684	write.AddContainer("MPedPhotFundamental", "Events");
685	write.AddContainer("MPedPhotFromExtractor", "Events");
686	write.AddContainer("MPedPhotFromExtractorRndm", "Events");
687	write.AddContainer("MTime", "Events", kFALSE);
688	write.AddContainer("MRawEvtHeader", "Events");
689	//write.AddContainer("MArrivalTime", "Events", kFALSE);
690	//write.AddContainer("MPointingPos", "Events", kFALSE);
691	// Slow-Control: Current-tree
692	write.AddContainer("MTimeCurrents", "Currents", kFALSE);
693	write.AddContainer("MCameraDC", "Currents", kFALSE);
694	write.AddContainer("MReportCurrents", "Currents", kFALSE);
695	// Slow-Control: Camera-tree
696	write.AddContainer("MReportCamera", "Camera", kFALSE);
697	write.AddContainer("MTimeCamera", "Camera", kFALSE);
698	write.AddContainer("MCameraAUX", "Camera", kFALSE);
699	write.AddContainer("MCameraCalibration", "Camera", kFALSE);
700	write.AddContainer("MCameraCooling", "Camera", kFALSE);
701	write.AddContainer("MCameraHV", "Camera", kFALSE);
702	write.AddContainer("MCameraLV", "Camera", kFALSE);
703	write.AddContainer("MCameraLids", "Camera", kFALSE);
704	// Slow-Control: Trigger-tree
705	write.AddContainer("MReportTrigger", "Trigger", kFALSE);
706	write.AddContainer("MTimeTrigger", "Trigger", kFALSE);
707	// Slow-Control: Drive-tree
708	write.AddContainer("MReportDrive", "Drive", kFALSE);
709	write.AddContainer("MTimeDrive", "Drive", kFALSE);
710	// Slow-Control: Central Control-tree
711	write.AddContainer("MReportCC", "CC", kFALSE);
712	write.AddContainer("MTimeCC", "CC", kFALSE);
713
714	// Write the special MC tree
715	MWriteRootFile writemc(2, fname, fOverwrite?"RECREATE":"NEW");
716	writemc.SetName("WriteMC");
717	writemc.AddContainer("MMcEvtBasic", "OriginalMC");
718
719	// Now setup tasklist for events
720	MTaskList tlist2;
721
722	tlist2.AddToList(&caldec);
723	tlist2.AddToList(&decode);
724	tlist2.AddToList(&apply);
725	tlist2.AddToList(&merge);
726	tlist2.AddToList(&pedlo1);
727	tlist2.AddToList(&pedlo2);
728	tlist2.AddToList(&pedlo3);
729	//-----------------------------------------------------------
730
731	MTaskList tlist3;
732	tlist3.SetFilter(&fcalib);
733
734	if (fIsInterlaced)
735	{
736	tlist2.AddToList(&fcalib);
737	tlist2.AddToList(&tlist3);
738
739	tlist3.AddToList(&pinext);
740	tlist3.AddToList(&bldext);
741	tlist3.AddToList(&taskenv3);
742	tlist3.AddToList(&pacalc);
743	tlist3.AddToList(&filcam);
744	if (fIsRelTimesUpdate)
745	tlist3.AddToList(&filtme);
746	if (IsUseBlindPixel())
747	tlist3.AddToList(&filbnd);
748	if (IsUsePINDiode())
749	tlist3.AddToList(&filpin);
750	tlist3.AddToList(&chcalc);
751	if (fIsRelTimesUpdate)
752	tlist3.AddToList(&recalc);
753	}
754
755	// Continue for all non-cosmic events
756	tlist2.AddToList(&conttp);
757	if (extractor1)
758	tlist2.AddToList(&taskenv1);
759	if (extractor2)
760	tlist2.AddToList(&taskenv2);
761	tlist2.AddToList(&fill0);
762	tlist2.AddToList(&fill1);
763	tlist2.AddToList(&contcos);
764	if (fIsHiLoCalibration)
765	tlist2.AddToList(&filhil);
766	if (fIsPulsePosCheck)
767	tlist2.AddToList(&filpul);
768	tlist2.AddToList(&fill2);
769	tlist2.AddToList(&calib);
770	if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
771	tlist2.AddToList(&caltm);
772	if (fIsInterlaced)
773	tlist2.AddToList(&fill8);
774	tlist2.AddToList(&bpcal);
775	tlist2.AddToList(&treat);
776	tlist2.AddToList(&fill6);
777	// tlist2.AddToList(&fill3);
778	tlist2.AddToList(&fill4);
779	tlist2.AddToList(&fill5);
780	if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
781	tlist2.AddToList(&fill7);
782	tlist2.AddToList(&fill9);
783
784	tlist2.AddToList(&fillflorian);
785
786	// Setup List for Drive-tree
787	//MPointingPosCalc pcalc;
788
789	// Now setup main tasklist
790	tlist.AddToList(read);
791	if (IsUseMC())
792	{
793	tlist.AddToList(&writemc);
794	tlist.AddToList(&contmc);
795	}
796
797	if (IsUseRootData())
798	tlist2.AddToList(&pextr);
799	tlist.AddToList(&tlist2, IsUseRootData() ? "Events" : "All");
800
801	//if (IsUseMC())
802	// tlist.AddToList(&pcalc, "Drive");
803
804	tlist.AddToList(&write);
805
806	// Create and setup the eventloop
807	MEvtLoop evtloop(fName);
808	evtloop.SetParList(&plist);
809	evtloop.SetDisplay(fDisplay);
810	evtloop.SetLogStream(fLog);
811	if (!SetupEnv(evtloop))
812	return kFALSE;
813
814	// Execute first analysis
815	const Bool_t rc = evtloop.Eventloop(fMaxEvents);
816
817	// Print statistics
818	if (read->GetNumExecutions()>0)
819	tlist.PrintStatistics();
820
821	// make sure owned object are deleted
822	if (extractor1 && extractor1!=fExtractor)
823	delete extractor1;
824	if (extractor2)
825	delete extractor2;
826	if (extractor3)
827	delete extractor3;
828
829	// return if job failed
830	if (!rc)
831	{
832	*fLog << err << GetDescriptor() << ": Failed." << endl;
833	return kFALSE;
834	}
835
836	// if everything went ok write and display result
837	DisplayResult(plist);
838
839	if (fIsPixelCheck)
840	{
841	if (fIsPulsePosCheck)
842	{
843	MHCalibrationPulseTimeCam pcam = (MHCalibrationPulseTimeCam)plist.FindObject("MHCalibrationPulseTimeCam");
844	MHCalibrationPix &pix1 = (*pcam)[fCheckedPixId];
845	pix1.DrawClone("");
846	}
847
848	if (fIsHiLoCalibration)
849	{
850	MHCalibrationHiLoCam hcam = (MHCalibrationHiLoCam)plist.FindObject("MHCalibrationHiLoCam");
851	MHCalibrationPix &pix2 = (*hcam)[fCheckedPixId];
852	pix2.DrawClone("");
853	}
854	}
855
856	interlacedcont.Add(&pulcam);
857
858	if (fIsHiLoCalibration)
859	interlacedcont.Add(&hilcam);
860
861	if (IsHistsStorage())
862	{
863	interlacedcont.Add(plist.FindObject("MHCalibrationHiLoCam"));
864	interlacedcont.Add(plist.FindObject("MHCalibrationPulseTimeCam"));
865	}
866
867	if (!WriteResult(interlacedcont))
868	return kFALSE;
869
870	// return if job went ok
871	*fLog << all << GetDescriptor() << ": Done." << endl;
872	*fLog << endl << endl;
873
874	return kTRUE;
875	}
876
877
878	void MJCalibrateSignal::DisplayResult(MParList &plist)
879	{
880
881	if (!fDisplay)
882	return;
883
884	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
885	/*
886	//
887	// Get container from list
888	//
889	MCalibrationPulseTimeCam pcam = (MCalibrationPulseTimeCam)plist.FindObject("MCalibrationPulseTimeCam");
890
891	MHCamera disp11 (geomcam, "PulseTime", "Mean pulse arrival time cosmics");
892	MHCamera disp21 (geomcam, "PulseTimeRMS", "RMS of pulse arrival time cosmics");
893
894	if (pcam)
895	{
896	disp11.SetCamContent(*pcam, 0);
897	disp11.SetCamError( *pcam, 1);
898	disp21.SetCamContent(*pcam, 2);
899	disp21.SetCamError( *pcam, 3);
900	}
901
902	disp11.SetYTitle("T [FADC sl.]");
903	disp21.SetYTitle("T [FADC sl.]");
904
905	if (fIsPulsePosCheck)
906	{
907	TCanvas &c0 = fDisplay->AddTab("PulseTime");
908	c0.Divide(2,3);
909
910	disp11.CamDraw(c0, 1, 2, 1);
911	disp21.CamDraw(c0, 2, 2, 1);
912	}
913	*/
914	if (!fIsHiLoCalibration)
915	return;
916
917	MCalibrationHiLoCam hcam = (MCalibrationHiLoCam)plist.FindObject("MCalibrationHiLoCam");
918
919	// Create histograms to display
920	MHCamera disp1 (geomcam, "HiLoConv", "Ratio Amplification HiGain vs. LoGain (Charges)");
921	MHCamera disp2 (geomcam, "HiLoDiff", "Arrival Time Diff. HiGain vs. LoGain (Times)");
922
923	disp1.SetCamContent(*hcam, 0);
924	disp1.SetCamError( *hcam, 1);
925	disp2.SetCamContent(*hcam, 5);
926	disp2.SetCamError( *hcam, 6);
927
928	disp1.SetYTitle("R [1]");
929	disp2.SetYTitle("\\Delta T [FADC sl.]");
930
931
932	TCanvas &c1 = fDisplay->AddTab("HiLoConv");
933	c1.Divide(2,3);
934
935	disp1.CamDraw(c1, 1, 2, 1);
936	disp2.CamDraw(c1, 2, 2, 1);
937	}
938

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