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source: trunk/MagicSoft/Mars/mjobs/MJCalibrateSignal.cc@ 7115

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Last change on this file since 7115 was 7115, checked in by tbretz, 19 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	!
20	! Copyright: MAGIC Software Development, 2000-2004
21	!
22	!
23	\* ======================================================================== */
24
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibrateSignal
28	//
29	// This class is reading the output written by callisto. It calibrates
30	// signal and time.
31	//
32	// The signal and time extractors are read from the callisto-output. In
33	// pricipal you could overwrite these default using the resource file,
34	// but this is NOT recommended!
35	//
36	/////////////////////////////////////////////////////////////////////////////
37	#include "MJCalibrateSignal.h"
38
39	#include <TEnv.h>
40	#include <TFile.h>
41
42	#include "MLog.h"
43	#include "MLogManip.h"
44
45	#include "MDirIter.h"
46	#include "MRunIter.h"
47	#include "MParList.h"
48	#include "MTaskList.h"
49	#include "MEvtLoop.h"
50
51	#include "MStatusDisplay.h"
52
53	#include "MGeomCam.h"
54	#include "MHCamEvent.h"
55	//#include "MHCamEventTH.h"
56	#include "MPedestalCam.h"
57	#include "MBadPixelsCam.h"
58	#include "MArrivalTimeCam.h"
59
60	#include "MCalibrationQECam.h"
61	#include "MCalibrationBlindCam.h"
62	#include "MCalibrationChargeCam.h"
63	#include "MCalibrationRelTimeCam.h"
64	#include "MCalibrationChargePINDiode.h"
65	#include "MCalibrationHiLoCam.h"
66	#include "MCalibrationPulseTimeCam.h"
67	#include "MCalibrationPatternDecode.h"
68
69	#include "MCalibrationChargeCalc.h"
70	#include "MCalibrationRelTimeCalc.h"
71
72	#include "MCalibrationIntensityChargeCam.h"
73	#include "MCalibrationIntensityBlindCam.h"
74	#include "MCalibrationIntensityRelTimeCam.h"
75	#include "MCalibrationIntensityQECam.h"
76	#include "MBadPixelsIntensityCam.h"
77
78	#include "MHCalibrationChargeCam.h"
79	#include "MHCalibrationChargeBlindCam.h"
80	#include "MHCalibrationChargePINDiode.h"
81	#include "MHCalibrationRelTimeCam.h"
82	#include "MHCalibrationPulseTimeCam.h"
83	#include "MHCalibrationHiLoCam.h"
84	#include "MHCamera.h"
85
86	#include "MCalibCalcFromPast.h"
87
88	#include "MReadReports.h"
89	#include "MReadMarsFile.h"
90	#include "MRawFileRead.h"
91	#include "MContinue.h"
92	#include "MTriggerPatternDecode.h"
93	#include "MFTriggerPattern.h"
94	#include "MGeomApply.h"
95	//#include "MMcPedestalCopy.h"
96	#include "MPointingPosCalc.h"
97	#include "MPedCalcFromLoGain.h"
98	#include "MExtractor.h"
99	#include "MExtractTimeAndCharge.h"
100	#include "MExtractPINDiode.h"
101	#include "MExtractBlindPixel.h"
102	#include "MFCosmics.h"
103	#include "MTaskEnv.h"
104	#include "MCalibrateData.h"
105	#include "MCalibrateRelTimes.h"
106	#include "MBadPixelsMerge.h"
107	#include "MBadPixelsCalc.h"
108	#include "MBadPixelsTreat.h"
109	#include "MFillH.h"
110	#include "MWriteRootFile.h"
111
112	ClassImp(MJCalibrateSignal);
113
114	using namespace std;
115
116	// --------------------------------------------------------------------------
117	//
118	// Default constructor.
119	//
120	// Sets:
121	// - fIsInterlaced to kTRUE
122	// - fIsRelTimesUpdate to kFALSE
123	// - fIsHiLoCalibration to kFALSE
124	// - fPulsePosCheck to kTRUE
125	//
126	MJCalibrateSignal::MJCalibrateSignal(const char name, const char title)
127	: fExtractor(0), fIsInterlaced(kTRUE), fIsRelTimesUpdate(kFALSE)
128	{
129	fName = name ? name : "MJCalibrateSignal";
130	fTitle = title ? title : "Tool to calibrate data";
131
132	SetPulsePosCheck();
133	//fCruns = NULL;
134	}
135
136	MJCalibrateSignal::~MJCalibrateSignal()
137	{
138	if (fExtractor)
139	delete fExtractor;
140	}
141
142	void MJCalibrateSignal::SetExtractor(const MExtractor *ext)
143	{
144	if (fExtractor)
145	delete fExtractor;
146
147	fExtractor = ext ? (MExtractor*)ext->Clone() : NULL;
148	}
149
150	Bool_t MJCalibrateSignal::WriteResult(TObjArray &cont)
151	{
152	if (IsNoStorage())
153	return kTRUE;
154
155	const TString name(Form("signal%08d.root", fSequence.GetSequence()));
156	return WriteContainer(cont, name);
157	}
158
159	Bool_t MJCalibrateSignal::ReadCalibration(TObjArray &l, MBadPixelsCam &cam, MExtractor* &ext2, MExtractor* &ext3, TString &geom) const
160	{
161	TString fname = Form("%s/calib%08d.root", fPathIn.Data(), fSequence.GetSequence());
162
163	*fLog << inf << "Reading from file: " << fname << endl;
164
165	TFile file(fname, "READ");
166	if (!file.IsOpen())
167	{
168	*fLog << err << dbginf << "ERROR - Could not open file " << fname << endl;
169	return kFALSE;
170	}
171
172	TObject *o = file.Get("ExtractSignal");
173	if (o && !o->InheritsFrom(MExtractor::Class()))
174	{
175	*fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
176	return kFALSE;
177	}
178	ext3 = o ? (MExtractor*)o->Clone() : NULL;
179
180	o = file.Get("ExtractTime");
181	if (o && !o->InheritsFrom(MExtractor::Class()))
182	{
183	*fLog << err << dbginf << "ERROR - ExtractTime read from " << fname << " doesn't inherit from MExtractor!" << endl;
184	return kFALSE;
185	}
186	ext2 = o ? (MExtractor*)o->Clone() : NULL;
187	if (!ext3 && !ext2)
188	{
189	*fLog << err << dbginf << "ERROR - Neither ExtractSignal nor ExrtractTime found in " << fname << "!" << endl;
190	return kFALSE;
191	}
192
193	o = file.Get("MGeomCam");
194	if (o && !o->InheritsFrom(MGeomCam::Class()))
195	{
196	*fLog << err << dbginf << "ERROR - MGeomCam read from " << fname << " doesn't inherit from MGeomCam!" << endl;
197	return kFALSE;
198	}
199	geom = o ? o->ClassName() : "";
200
201	TObjArray cont(l);
202	cont.Add(&cam);
203	return ReadContainer(cont);
204	}
205
206	// --------------------------------------------------------------------------
207	//
208	// MJCalibration allows to setup several option by a resource file:
209	// MJCalibrateSignal.RawData: yes,no
210	//
211	// For more details see the class description and the corresponding Getters
212	//
213	Bool_t MJCalibrateSignal::CheckEnvLocal()
214	{
215	SetInterlaced(GetEnv("Interlaced", fIsInterlaced));
216	SetRelTimesUpdate(GetEnv("RelTimesUpdate", fIsRelTimesUpdate));
217
218	return MJCalib::CheckEnvLocal();
219	}
220
221	Bool_t MJCalibrateSignal::Process(MPedestalCam &pedcamab, MPedestalCam &pedcambias,
222	MPedestalCam &pedcamextr)
223	{
224	if (!fSequence.IsValid())
225	{
226	*fLog << err << "ERROR - Sequence invalid..." << endl;
227	return kFALSE;
228	}
229
230	*fLog << inf;
231	fLog->Separator(GetDescriptor());
232	*fLog << "Calculate calibrated data from Sequence #";
233	*fLog << fSequence.GetSequence() << endl << endl;
234
235
236	//if (!CheckEnv())
237	// return kFALSE;
238
239	CheckEnv();
240
241	// --------------------------------------------------------------------------------
242
243	MDirIter iter;
244	if (fSequence.IsValid())
245	{
246	const Int_t n0 = fSequence.SetupDatRuns(iter, fPathData, IsUseRawData());
247	const Int_t n1 = fSequence.GetNumDatRuns();
248	if (n0==0)
249	{
250	*fLog << err << "ERROR - No input files of sequence found!" << endl;
251	return kFALSE;
252	}
253	if (n0!=n1)
254	{
255	*fLog << err << "ERROR - Number of files found (" << n0 << ") doesn't match number of files in sequence (" << n1 << ")" << endl;
256	if (fLog->GetDebugLevel()>4)
257	{
258	*fLog << dbg << "Files which are searched:" << endl;
259	iter.Print();
260	}
261	return kFALSE;
262	}
263	}
264
265	// Read File
266	MCalibrationIntensityChargeCam ichcam;
267	MCalibrationIntensityQECam iqecam;
268	MCalibrationIntensityBlindCam iblcam;
269	MCalibrationIntensityRelTimeCam itmcam;
270	MBadPixelsIntensityCam ibdcam;
271
272	MHCalibrationChargeCam hchacam;
273	MHCalibrationChargeBlindCam hbndcam;
274	MHCalibrationChargePINDiode hpndiod;
275	MHCalibrationRelTimeCam hrelcam;
276	MHCalibrationHiLoCam hilocam;
277	MHCalibrationPulseTimeCam hpulcam;
278
279	hchacam.SetOscillations(kFALSE);
280	hbndcam.SetOscillations(kFALSE);
281	hrelcam.SetOscillations(kFALSE);
282
283	MCalibrationChargeCam calcam;
284	MCalibrationQECam qecam;
285	MCalibrationBlindCam bndcam;
286	MCalibrationChargePINDiode pind;
287	MCalibrationRelTimeCam tmcam;
288	MCalibrationHiLoCam hilcam;
289	MCalibrationPulseTimeCam pulcam;
290
291	MBadPixelsCam badpix;
292
293	TObjArray interlacedcont;
294	if (fIsInterlaced)
295	{
296	interlacedcont.Add(&ichcam);
297	interlacedcont.Add(&iqecam);
298	interlacedcont.Add(&iblcam);
299	interlacedcont.Add(&itmcam);
300	interlacedcont.Add(&ibdcam);
301	interlacedcont.Add(&hchacam);
302	if (IsUseBlindPixel())
303	interlacedcont.Add(&hbndcam);
304	if (IsUsePINDiode())
305	interlacedcont.Add(&hpndiod);
306	if (fIsRelTimesUpdate)
307	interlacedcont.Add(&hrelcam);
308	}
309
310	MExtractor *extractor1=fExtractor;
311	MExtractor *extractor2=0;
312	MExtractor *extractor3=0;
313	TString geom;
314
315	TObjArray calibcont;
316	calibcont.Add(&calcam);
317	calibcont.Add(&qecam);
318	calibcont.Add(&bndcam);
319	calibcont.Add(&pind);
320	calibcont.Add(&tmcam);
321
322	if (!ReadCalibration(calibcont, badpix, extractor2, extractor3, geom))
323	return kFALSE;
324
325	*fLog << all;
326	if (!geom.IsNull())
327	*fLog << inf << "Camera geometry found in file: " << geom << endl;
328	else
329	*fLog << inf << "No Camera geometry found using default <MGeomCamMagic>" << endl;
330
331	if (extractor3)
332	{
333	*fLog << underline << "Signal Extractor found in calibration file" << endl;
334	extractor3->Print();
335	*fLog << endl;
336	}
337	else
338	*fLog << inf << "No Signal Extractor: ExtractSignal in file." << endl;
339
340
341	if (extractor1)
342	{
343	*fLog << underline << "Modified Signal Extractor set by user." << endl;
344	extractor1->Print();
345	*fLog << endl;
346	}
347	else
348	{
349	*fLog << inf << "No modified Signal Extractor set by user... using ExtractSignal." << endl;
350	extractor1 = extractor3 ? (MExtractor*)extractor3->Clone() : 0;
351	}
352
353	if (extractor2)
354	{
355	*fLog << underline << "Time Extractor found in calibration file" << endl;
356	extractor2->Print();
357	*fLog << endl;
358	}
359	else
360	*fLog << inf << "No Time Extractor: ExtractTime in file." << endl;
361
362	// This is necessary for the case in which it is not in the files
363	MBadPixelsCam badcam;
364
365	// Setup Parlist
366	MParList plist;
367	plist.AddToList(this); // take care of fDisplay!
368	plist.AddToList(&badcam);
369	plist.AddToList(&hilcam);
370	plist.AddToList(&calibcont); // Using AddToList(TObjArray *)
371	plist.AddToList(&interlacedcont); // Using AddToList(TObjArray *)
372	plist.AddToList(&pulcam);
373
374	// Setup Tasklist
375	MTaskList tlist;
376	plist.AddToList(&tlist);
377
378	MReadReports readreal;
379	readreal.AddTree("Events", "MTime.", MReadReports::kMaster);
380	readreal.AddTree("Trigger");
381	readreal.AddTree("Camera");
382	readreal.AddTree("Drive");
383	readreal.AddTree("CC");
384	readreal.AddTree("Currents");
385
386	MReadMarsFile readmc("Events");
387	readmc.DisableAutoScheme();
388
389	MRawFileRead rawread(NULL);
390
391	MRead *read = 0;
392	switch (GetDataFlag())
393	{
394	case kIsUseRawData: read = &rawread; break;
395	case kIsUseMC: read = &readmc; break;
396	case kIsUseRootData: read = &readreal; break;
397	}
398	read->AddFiles(iter);
399
400	const TString fname(Form("%s{s/_D_/_Y_}{s/.raw$/.root}", fPathOut.Data()));
401
402
403	// Skips MC which have no contents. This are precisely the
404	// events which fullfilled the MC Lvl1 trigger and an
405	// arbitrary cut (typically at 50phe) to speed up simulation
406	MContinue contmc("MRawEvtData.GetNumPixels<0.5", "ContEmptyMC");
407
408	//MPointingPosInterpolate pextr;
409	//pextr.AddFiles(&iter);
410
411	MGeomApply apply; // Only necessary to create geometry
412	if (!geom.IsNull())
413	apply.SetGeometry(geom);
414	MBadPixelsMerge merge(&badpix);
415
416	// Make sure that pedcamab has the correct name
417	pedcamab.SetName("MPedestalFundamental");
418	pedcamextr.SetName("MPedestalFromExtractorRndm");
419	pedcambias.SetName("MPedestalFromExtractor");
420	plist.AddToList(&pedcamextr);
421	plist.AddToList(&pedcambias);
422	plist.AddToList(&pedcamab);
423
424	MArrivalTimeCam timecam;
425	plist.AddToList(&timecam);
426
427	// Check for interleaved events
428	MCalibrationPatternDecode caldec;
429	MTriggerPatternDecode decode;
430
431	// This will make that for data with version less than 5, where
432	// trigger patterns were not yet correct, all the events in the real
433	// data file will be processed. In any case there are no interleaved
434	// calibration events in such data, so this is fine.
435	MFTriggerPattern ftp;
436	ftp.SetDefault(kTRUE);
437	// ftp.RequireCalibration();
438	ftp.DenyCalibration();
439	ftp.DenyPedestal();
440	// ftp.DenyPinDiode();
441	ftp.SetInverted();
442
443	// This will skip interleaved calibration events and pedestal events (if any)
444	// --> tlist2
445	MContinue conttp(&ftp, "ContTrigPattern");
446
447	// Do signal and pedestal calculation
448	MPedCalcFromLoGain pedlo1("MPedCalcFundamental");
449	pedlo1.SetPedestalUpdate(kTRUE);
450	pedlo1.SetNamePedestalCamOut("MPedestalFundamental");
451
452	MPedCalcFromLoGain pedlo2("MPedCalcWithExtractorRndm");
453	pedlo2.SetPedestalUpdate(kTRUE);
454	pedlo2.SetRandomCalculation(kTRUE);
455	pedlo2.SetNamePedestalCamIn("MPedestalFundamental");
456	pedlo2.SetNamePedestalCamOut("MPedestalFromExtractorRndm");
457
458	MPedCalcFromLoGain pedlo3("MPedCalcWithExtractor");
459	pedlo3.SetPedestalUpdate(kTRUE);
460	pedlo3.SetRandomCalculation(kFALSE);
461	pedlo3.SetNamePedestalCamIn("MPedestalFundamental");
462	pedlo3.SetNamePedestalCamOut("MPedestalFromExtractor");
463
464	if (extractor1)
465	{
466	extractor1->SetPedestals(&pedcamab);
467
468	if (extractor1->InheritsFrom("MExtractTimeAndCharge"))
469	{
470	pedlo2.SetExtractor((MExtractTimeAndCharge*)extractor1);
471	pedlo3.SetExtractor((MExtractTimeAndCharge*)extractor1);
472	const Int_t win = ((MExtractTimeAndCharge*)extractor1)->GetWindowSizeHiGain();
473	pedlo1.SetExtractWindow(15, win);
474	pedlo2.SetExtractWindow(15, win/obsolete/);
475	pedlo3.SetExtractWindow(15, win/obsolete/);
476	}
477	else
478	{
479	// FIXME: How to get the fixed value 15 automatically?
480	const Int_t f = (Int_t)(15.5+extractor1->GetHiGainFirst());
481	const Int_t n = (Int_t)(15.5+extractor1->GetNumHiGainSamples());
482	pedlo1.SetExtractWindow(f, n);
483	pedlo2.SetExtractWindow(f, n);
484	pedlo3.SetExtractWindow(f, n);
485	}
486	}
487	if (extractor2)
488	extractor2->SetPedestals(&pedcamab);
489
490	if (extractor3)
491	extractor3->SetPedestals(&pedcamab);
492
493	MFCosmics fcosmics;
494	fcosmics.SetNamePedestalCam("MPedestalFundamental");
495	MContinue contcos(&fcosmics, "ContTrigEvts");
496	contcos.SetInverted();
497
498	//MMcPedestalCopy pcopy;
499	MTaskEnv taskenv1("ExtractSignal");
500	MTaskEnv taskenv2("ExtractTime");
501	MTaskEnv taskenv3("ExtractInterlaced");
502	taskenv1.SetDefault(extractor1);
503	taskenv2.SetDefault(extractor2);
504	taskenv3.SetDefault(extractor3);
505
506	//
507	// This is new calibration to photo-electrons, hard-coded
508	// as decided at the Wuerzburg software meeting 26.01.05
509	//
510	MCalibrateData calib;
511	calib.SetSignalType(MCalibrateData::kPhe);
512	calib.AddPedestal("Fundamental");
513	calib.AddPedestal("FromExtractor");
514	calib.AddPedestal("FromExtractorRndm");
515	calib.SetPedestalFlag(MCalibrateData::kEvent);
516	//----------------------------------------------------------
517
518	MExtractPINDiode pinext;
519	MExtractBlindPixel bldext;
520
521	MFTriggerPattern fcalib("CalibFilter");
522	fcalib.SetDefault(kFALSE);
523	fcalib.RequireCalibration();
524
525	MCalibrationChargeCalc chcalc;
526	MCalibrationRelTimeCalc recalc;
527	MCalibCalcFromPast pacalc;
528	chcalc.SetOutputFile("");
529	recalc.SetOutputFile("");
530
531	pinext.SetPedestals(&pedcamab);
532	bldext.SetPedestals(&pedcamab);
533	chcalc.SetPedestals(&pedcamextr);
534
535	pacalc.SetChargeCalc(&chcalc);
536	if (fIsRelTimesUpdate)
537	pacalc.SetRelTimeCalc(&recalc);
538	pacalc.SetCalibrate(&calib);
539
540	//
541	// Intensity Calibration histogramming
542	//
543	MFillH filpin(&hpndiod, "MExtractedSignalPINDiode", "FillPINDiode");
544	MFillH filbnd(&hbndcam, "MExtractedSignalBlindPixel", "FillBlindCam");
545	MFillH filcam(&hchacam, "MExtractedSignalCam", "FillChargeCam");
546	MFillH filtme(&hrelcam, "MArrivalTimeCam", "FillRelTime");
547	MFillH filhil(&hilocam, "MExtractedSignalCam", "FillHiLoRatio");
548	MFillH filpul(&hpulcam, "MRawEvtData", "FillPulseTime");
549	filpin.SetBit(MFillH::kDoNotDisplay);
550	filbnd.SetBit(MFillH::kDoNotDisplay);
551	filcam.SetBit(MFillH::kDoNotDisplay);
552	filtme.SetBit(MFillH::kDoNotDisplay);
553	filhil.SetBit(MFillH::kDoNotDisplay);
554	filpul.SetBit(MFillH::kDoNotDisplay);
555
556	MCalibrateRelTimes caltm;
557	MBadPixelsCalc bpcal;
558	MBadPixelsTreat treat;
559
560	bpcal.SetNamePedPhotCam("MPedPhotFromExtractor");
561	treat.AddNamePedPhotCam("MPedPhotFundamental");
562	treat.AddNamePedPhotCam("MPedPhotFromExtractor");
563	treat.AddNamePedPhotCam("MPedPhotFromExtractorRndm");
564	if (!extractor2 && !extractor1->InheritsFrom("MExtractTimeAndCharge"))
565	treat.SetProcessTimes(kFALSE);
566
567	MHCamEvent evt0( 0, "PedFLG", "Fundamental Pedestal from Lo Gain;;P [cnts/sl]");
568	MHCamEvent evt1( 2, "PedRmsFLG", "RMS from Extractor applied to ped.;;\\sigma_{p} [cnts/sl]");
569	MHCamEvent evt2( 0, "Extra'd", "Extracted Signal;;S [cnts/sl]");
570	// MHCamEvent evt3(4, "PedPhot", "Calibrated Pedestal;;P [phe]");
571	MHCamEvent evt4( 5, "PedRMS", "Calibrated RMS from Extractor applied to ped.;;\\sigma_{p} [phe]");
572	MHCamEvent evt5( 0, "Interp'd", "Interpolated Signal;;S [phe]");
573	MHCamEvent evt6(102, "Unsuitable", "Fraction of unsuitable events per Pixel;;[1]");
574	MHCamEvent evt7( 6, "Times", "Calibrated Arrival Time;;T [fadc sl]");
575	MHCamEvent evt8( 0, "Conv", "Calibration Conv. Factors;;[phe/fadc cnts]");
576	MHCamEvent evt9( 7, "PulsePos", "Pulse Position of cosmics (>15phe);;T"); //Calibration Conv. Factors;;[phe/fadc cnts]
577	evt6.SetThreshold();
578
579	MFillH fill0(&evt0, "MPedestalFundamental", "FillPedFLG");
580	MFillH fill1(&evt1, "MPedestalFromExtractorRndm", "FillPedRmsFLG");
581	MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtracted");
582	// MFillH fill3(&evt3, "MPedPhotFundamental", "FillPedPhot");
583	MFillH fill4(&evt4, "MPedPhotFromExtractorRndm", "FillPedRMS");
584	MFillH fill5(&evt5, "MSignalCam", "FillInterpolated");
585	MFillH fill6(&evt6, "MBadPixelsCam", "FillUnsuitable");
586	MFillH fill7(&evt7, "MSignalCam", "FillTimes");
587	MFillH fill8(&evt8, "MCalibConstCam", "FillConv");
588	MFillH fill9(&evt9, "MSignalCam", "FillPulse");
589
590	MTaskEnv fillflorian("FinalFantasy");
591	fillflorian.SetDefault();
592
593	// The second rule is for the case reading raw-files!
594	MWriteRootFile write(2, fname, fOverwrite?"RECREATE":"NEW");
595	// Run Header
596	write.AddContainer("MRawRunHeader", "RunHeaders");
597	write.AddContainer("MBadPixelsCam", "RunHeaders");
598	write.AddContainer("MGeomCam", "RunHeaders");
599	// Monte Carlo Headers
600	write.AddContainer("MMcRunHeader", "RunHeaders", kFALSE);
601	write.AddContainer("MMcFadcHeader", "RunHeaders", kFALSE);
602	write.AddContainer("MMcTrigHeader", "RunHeaders", kFALSE);
603	write.AddContainer("MMcConfigRunHeader", "RunHeaders", kFALSE);
604	write.AddContainer("MMcCorsikaRunHeader", "RunHeaders", kFALSE);
605	// Monte Carlo
606	write.AddContainer("MMcEvt", "Events", kFALSE);
607	write.AddContainer("MMcTrig", "Events", kFALSE);
608	// Data tree
609	write.AddContainer("MSignalCam", "Events");
610	write.AddContainer("MPedPhotFundamental", "Events");
611	write.AddContainer("MPedPhotFromExtractor", "Events");
612	write.AddContainer("MPedPhotFromExtractorRndm", "Events");
613	write.AddContainer("MTime", "Events", kFALSE);
614	write.AddContainer("MRawEvtHeader", "Events");
615	//write.AddContainer("MArrivalTime", "Events", kFALSE);
616	//write.AddContainer("MPointingPos", "Events", kFALSE);
617	// Slow-Control: Current-tree
618	write.AddContainer("MTimeCurrents", "Currents", kFALSE);
619	write.AddContainer("MCameraDC", "Currents", kFALSE);
620	write.AddContainer("MReportCurrents", "Currents", kFALSE);
621	// Slow-Control: Camera-tree
622	write.AddContainer("MReportCamera", "Camera", kFALSE);
623	write.AddContainer("MTimeCamera", "Camera", kFALSE);
624	write.AddContainer("MCameraAUX", "Camera", kFALSE);
625	write.AddContainer("MCameraCalibration", "Camera", kFALSE);
626	write.AddContainer("MCameraCooling", "Camera", kFALSE);
627	write.AddContainer("MCameraHV", "Camera", kFALSE);
628	write.AddContainer("MCameraLV", "Camera", kFALSE);
629	write.AddContainer("MCameraLids", "Camera", kFALSE);
630	// Slow-Control: Trigger-tree
631	write.AddContainer("MReportTrigger", "Trigger", kFALSE);
632	write.AddContainer("MTimeTrigger", "Trigger", kFALSE);
633	// Slow-Control: Drive-tree
634	write.AddContainer("MReportDrive", "Drive", kFALSE);
635	write.AddContainer("MTimeDrive", "Drive", kFALSE);
636	// Slow-Control: Central Control-tree
637	write.AddContainer("MReportCC", "CC", kFALSE);
638	write.AddContainer("MTimeCC", "CC", kFALSE);
639
640	// Write the special MC tree
641	MWriteRootFile writemc(2, fname, fOverwrite?"RECREATE":"NEW");
642	writemc.SetName("WriteMC");
643	writemc.AddContainer("MMcEvtBasic", "OriginalMC");
644
645	// Now setup tasklist for events
646	MTaskList tlist2;
647
648	tlist2.AddToList(&caldec);
649	tlist2.AddToList(&decode);
650	tlist2.AddToList(&apply);
651	tlist2.AddToList(&merge);
652	tlist2.AddToList(&pedlo1);
653	tlist2.AddToList(&pedlo2);
654	tlist2.AddToList(&pedlo3);
655	//-----------------------------------------------------------
656
657	MTaskList tlist3;
658	tlist3.SetFilter(&fcalib);
659
660	if (fIsInterlaced)
661	{
662	tlist2.AddToList(&fcalib);
663	tlist2.AddToList(&tlist3);
664
665	if (IsUsePINDiode())
666	tlist3.AddToList(&pinext);
667	if (IsUseBlindPixel())
668	tlist3.AddToList(&bldext);
669	tlist3.AddToList(&taskenv3);
670	tlist3.AddToList(&pacalc);
671	tlist3.AddToList(&filcam);
672	if (fIsRelTimesUpdate)
673	tlist3.AddToList(&filtme);
674	if (IsUseBlindPixel())
675	tlist3.AddToList(&filbnd);
676	if (IsUsePINDiode())
677	tlist3.AddToList(&filpin);
678	tlist3.AddToList(&chcalc);
679	if (fIsRelTimesUpdate)
680	tlist3.AddToList(&recalc);
681	}
682
683	// Continue for all non-cosmic events
684	tlist2.AddToList(&conttp);
685	if (extractor1)
686	tlist2.AddToList(&taskenv1);
687	if (extractor2)
688	tlist2.AddToList(&taskenv2);
689	tlist2.AddToList(&fill0);
690	tlist2.AddToList(&fill1);
691	tlist2.AddToList(&contcos);
692	if (fIsHiLoCalibration)
693	{
694	plist.AddToList(&hilocam);
695	tlist2.AddToList(&filhil);
696	}
697	if (fIsPulsePosCheck)
698	{
699	plist.AddToList(&hpulcam);
700	tlist2.AddToList(&filpul);
701	}
702
703	tlist2.AddToList(&fill2);
704	tlist2.AddToList(&calib);
705	if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
706	tlist2.AddToList(&caltm);
707	if (fIsInterlaced)
708	tlist2.AddToList(&fill8);
709	tlist2.AddToList(&bpcal);
710	tlist2.AddToList(&treat);
711	tlist2.AddToList(&fill6);
712	// tlist2.AddToList(&fill3);
713	tlist2.AddToList(&fill4);
714	tlist2.AddToList(&fill5);
715	if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
716	tlist2.AddToList(&fill7);
717	tlist2.AddToList(&fill9);
718
719	tlist2.AddToList(&fillflorian);
720
721	// Setup List for Drive-tree
722	//MPointingPosCalc pcalc;
723
724	// Now setup main tasklist
725	tlist.AddToList(read);
726
727	if (IsUseMC())
728	{
729	tlist.AddToList(&writemc);
730	tlist.AddToList(&contmc);
731	}
732
733	//if (IsUseRootData())
734	// tlist2.AddToList(&pextr);
735	tlist.AddToList(&tlist2, IsUseRootData() ? "Events" : "All");
736
737	//if (IsUseMC())
738	// tlist.AddToList(&pcalc, "Drive");
739
740	tlist.AddToList(&write);
741
742	// Create and setup the eventloop
743	MEvtLoop evtloop(fName);
744	evtloop.SetParList(&plist);
745	evtloop.SetDisplay(fDisplay);
746	evtloop.SetLogStream(fLog);
747	if (!SetupEnv(evtloop))
748	return kFALSE;
749
750	// Execute first analysis
751	const Bool_t rc = evtloop.Eventloop(fMaxEvents);
752
753	// make sure owned object are deleted
754	if (extractor1 && extractor1!=fExtractor)
755	delete extractor1;
756	if (extractor2)
757	delete extractor2;
758	if (extractor3)
759	delete extractor3;
760
761	// return if job failed
762	if (!rc)
763	{
764	*fLog << err << GetDescriptor() << ": Failed." << endl;
765	return kFALSE;
766	}
767
768	// if everything went ok write and display result
769	DisplayResult(plist);
770
771	if (fIsPixelCheck)
772	{
773	if (fIsPulsePosCheck)
774	hpulcam[fCheckedPixId].DrawClone("");
775
776	if (fIsHiLoCalibration)
777	hilocam[fCheckedPixId].DrawClone("");
778	}
779
780	interlacedcont.Add(&pulcam);
781
782	if (fIsHiLoCalibration)
783	interlacedcont.Add(&hilcam);
784
785	if (fIsPulsePosCheck)
786	interlacedcont.Add(plist.FindObject("MHCalibrationPulseTimeCam"));
787
788	if (fIsHiLoCalibration)
789	interlacedcont.Add(plist.FindObject("MHCalibrationHiLoCam"));
790
791	if (!WriteResult(interlacedcont))
792	return kFALSE;
793
794	// return if job went ok
795	*fLog << all << GetDescriptor() << ": Done." << endl;
796	*fLog << endl << endl;
797
798	return kTRUE;
799	}
800
801
802	void MJCalibrateSignal::DisplayResult(MParList &plist)
803	{
804	if (!fDisplay \|\| !fIsHiLoCalibration)
805	return;
806
807	MCalibrationHiLoCam hcam = (MCalibrationHiLoCam)plist.FindObject("MCalibrationHiLoCam");
808	MGeomCam geom = (MGeomCam)plist.FindObject("MGeomCam");
809	if (!hcam \|\| !geom)
810	return;
811
812	// Create histograms to display
813	MHCamera disp1(*geom, "HiLoConv", "Ratio Amplification HiGain vs. LoGain (Charges)");
814	MHCamera disp2(*geom, "HiLoDiff", "Arrival Time Diff. HiGain vs. LoGain (Times)");
815
816	disp1.SetCamContent(*hcam, 0);
817	disp1.SetCamError( *hcam, 1);
818	disp2.SetCamContent(*hcam, 5);
819	disp2.SetCamError( *hcam, 6);
820
821	disp1.SetYTitle("R [1]");
822	disp2.SetYTitle("\\Delta T [FADC sl.]");
823
824	TCanvas &c1 = fDisplay->AddTab("HiLoConv");
825	c1.Divide(2,3);
826
827	disp1.CamDraw(c1, 1, 2, 1);
828	disp2.CamDraw(c1, 2, 2, 1);
829	}
830

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