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source: trunk/MagicSoft/Mars/mjobs/MJCalibrateSignal.cc@ 8220

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Last change on this file since 8220 was 8220, checked in by tbretz, 18 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	!
20	! Copyright: MAGIC Software Development, 2000-2004
21	!
22	!
23	\* ======================================================================== */
24
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibrateSignal
28	//
29	// This class is reading the output written by callisto. It calibrates
30	// signal and time.
31	//
32	// The signal and time extractors are read from the callisto-output. In
33	// pricipal you could overwrite these default using the resource file,
34	// but this is NOT recommended!
35	//
36	/////////////////////////////////////////////////////////////////////////////
37	#include "MJCalibrateSignal.h"
38
39	#include <TEnv.h>
40	#include <TFile.h>
41
42	#include "MLog.h"
43	#include "MLogManip.h"
44
45	#include "MDirIter.h"
46	#include "MRunIter.h"
47	#include "MParList.h"
48	#include "MTaskList.h"
49	#include "MEvtLoop.h"
50
51	#include "MStatusDisplay.h"
52
53	#include "MGeomCam.h"
54	#include "MHCamEvent.h"
55	//#include "MHCamEventTH.h"
56	#include "MPedestalCam.h"
57	#include "MBadPixelsCam.h"
58	#include "MArrivalTimeCam.h"
59
60	#include "MCalibrationQECam.h"
61	#include "MCalibrationBlindCam.h"
62	#include "MCalibrationChargeCam.h"
63	#include "MCalibrationRelTimeCam.h"
64	#include "MCalibrationChargePINDiode.h"
65	#include "MCalibrationHiLoCam.h"
66	#include "MCalibrationPulseTimeCam.h"
67	#include "MCalibrationPatternDecode.h"
68
69	#include "MCalibrationChargeCalc.h"
70	#include "MCalibrationRelTimeCalc.h"
71
72	#include "MCalibrationIntensityChargeCam.h"
73	#include "MCalibrationIntensityBlindCam.h"
74	#include "MCalibrationIntensityRelTimeCam.h"
75	#include "MCalibrationIntensityQECam.h"
76	#include "MCalibrationIntensityConstCam.h"
77	#include "MBadPixelsIntensityCam.h"
78
79	#include "MHCalibrationChargeCam.h"
80	#include "MHCalibrationChargeBlindCam.h"
81	#include "MHCalibrationChargePINDiode.h"
82	#include "MHCalibrationRelTimeCam.h"
83	#include "MHCalibrationPulseTimeCam.h"
84	#include "MHCalibrationHiLoCam.h"
85	#include "MHCamera.h"
86
87	#include "MCalibCalcFromPast.h"
88
89	#include "MReadReports.h"
90	#include "MReadMarsFile.h"
91	#include "MRawFileRead.h"
92	#include "MContinue.h"
93	#include "MTriggerPatternDecode.h"
94	#include "MFTriggerPattern.h"
95	#include "MGeomApply.h"
96	#include "MPedestalSubtract.h"
97	//#include "MMcPedestalCopy.h"
98	#include "MPointingPosCalc.h"
99	#include "MPedCalcFromLoGain.h"
100	#include "MExtractor.h"
101	#include "MExtractTimeAndCharge.h"
102	#include "MExtractPINDiode.h"
103	#include "MExtractBlindPixel.h"
104	#include "MFCosmics.h"
105	#include "MTaskEnv.h"
106	#include "MCalibrateData.h"
107	#include "MCalibrateRelTimes.h"
108	#include "MBadPixelsMerge.h"
109	#include "MBadPixelsCalc.h"
110	#include "MBadPixelsTreat.h"
111	#include "MFillH.h"
112	#include "MWriteRootFile.h"
113
114	ClassImp(MJCalibrateSignal);
115
116	using namespace std;
117
118	// --------------------------------------------------------------------------
119	//
120	// Default constructor.
121	//
122	// Sets:
123	// - fIsInterlaced to kTRUE
124	// - fIsRelTimesUpdate to kFALSE
125	// - fIsHiLoCalibration to kFALSE
126	// - fPulsePosCheck to kTRUE
127	//
128	MJCalibrateSignal::MJCalibrateSignal(const char name, const char title)
129	: fExtractor(0), fIsInterlaced(kTRUE), fIsRelTimesUpdate(kFALSE)
130	{
131	fName = name ? name : "MJCalibrateSignal";
132	fTitle = title ? title : "Tool to calibrate data";
133
134	SetPulsePosCheck();
135	//fCruns = NULL;
136	}
137
138	MJCalibrateSignal::~MJCalibrateSignal()
139	{
140	if (fExtractor)
141	delete fExtractor;
142	}
143
144	void MJCalibrateSignal::SetExtractor(const MExtractor *ext)
145	{
146	if (fExtractor)
147	delete fExtractor;
148
149	fExtractor = ext ? (MExtractor*)ext->Clone() : NULL;
150	}
151
152	Bool_t MJCalibrateSignal::WriteResult(TObjArray &cont)
153	{
154	if (IsNoStorage())
155	return kTRUE;
156
157	const TString name(Form("signal%08d.root", fSequence.GetSequence()));
158	return WriteContainer(cont, name);
159	}
160
161	Bool_t MJCalibrateSignal::ReadCalibration(TObjArray &l, MBadPixelsCam &cam, MExtractor* &ext2, MExtractor* &ext3, TString &geom) const
162	{
163	TString fname = Form("%s/calib%08d.root", fPathIn.Data(), fSequence.GetSequence());
164
165	*fLog << inf << "Reading from file: " << fname << endl;
166
167	TFile file(fname, "READ");
168	if (!file.IsOpen())
169	{
170	*fLog << err << dbginf << "ERROR - Could not open file " << fname << endl;
171	return kFALSE;
172	}
173
174	TObject *o = file.Get("ExtractSignal");
175	if (o && !o->InheritsFrom(MExtractor::Class()))
176	{
177	*fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
178	return kFALSE;
179	}
180	ext3 = o ? (MExtractor*)o->Clone() : NULL;
181
182	o = file.Get("ExtractTime");
183	if (o && !o->InheritsFrom(MExtractor::Class()))
184	{
185	*fLog << err << dbginf << "ERROR - ExtractTime read from " << fname << " doesn't inherit from MExtractor!" << endl;
186	return kFALSE;
187	}
188	ext2 = o ? (MExtractor*)o->Clone() : NULL;
189	if (!ext3 && !ext2)
190	{
191	*fLog << err << dbginf << "ERROR - Neither ExtractSignal nor ExrtractTime found in " << fname << "!" << endl;
192	return kFALSE;
193	}
194
195	o = file.Get("MGeomCam");
196	if (o && !o->InheritsFrom(MGeomCam::Class()))
197	{
198	*fLog << err << dbginf << "ERROR - MGeomCam read from " << fname << " doesn't inherit from MGeomCam!" << endl;
199	return kFALSE;
200	}
201	geom = o ? o->ClassName() : "";
202
203	TObjArray cont(l);
204	cont.Add(&cam);
205	return ReadContainer(cont);
206	}
207
208	// --------------------------------------------------------------------------
209	//
210	// MJCalibration allows to setup several option by a resource file:
211	// MJCalibrateSignal.RawData: yes,no
212	//
213	// For more details see the class description and the corresponding Getters
214	//
215	Bool_t MJCalibrateSignal::CheckEnvLocal()
216	{
217	SetInterlaced(GetEnv("Interlaced", fIsInterlaced));
218	SetRelTimesUpdate(GetEnv("RelTimesUpdate", fIsRelTimesUpdate));
219
220	return MJCalib::CheckEnvLocal();
221	}
222
223	Bool_t MJCalibrateSignal::Process(MPedestalCam &pedcamab, MPedestalCam &pedcambias,
224	MPedestalCam &pedcamextr)
225	{
226	if (!fSequence.IsValid())
227	{
228	*fLog << err << "ERROR - Sequence invalid..." << endl;
229	return kFALSE;
230	}
231
232	*fLog << inf;
233	fLog->Separator(GetDescriptor());
234	*fLog << "Calculate calibrated data from Sequence #";
235	*fLog << fSequence.GetSequence() << endl << endl;
236
237
238	//if (!CheckEnv())
239	// return kFALSE;
240
241	CheckEnv();
242
243	// --------------------------------------------------------------------------------
244
245	MDirIter iter;
246	if (fSequence.IsValid())
247	{
248	if (fSequence.SetupDatRuns(iter, fPathData, IsUseRawData())<=0)
249	return kFALSE;
250	}
251
252	// Read File
253	MCalibrationIntensityChargeCam ichcam;
254	MCalibrationIntensityQECam iqecam;
255	MCalibrationIntensityBlindCam iblcam;
256	MCalibrationIntensityRelTimeCam itmcam;
257	MCalibrationIntensityConstCam icncam;
258	MBadPixelsIntensityCam ibdcam;
259
260	MHCalibrationChargeCam hchacam;
261	MHCalibrationChargeBlindCam hbndcam;
262	MHCalibrationChargePINDiode hpndiod;
263	MHCalibrationRelTimeCam hrelcam;
264	MHCalibrationHiLoCam hilocam;
265	MHCalibrationPulseTimeCam hpulcam;
266
267	hchacam.SetOscillations(kFALSE);
268	hbndcam.SetOscillations(kFALSE);
269	hrelcam.SetOscillations(kFALSE);
270
271	MCalibrationChargeCam calcam;
272	MCalibrationQECam qecam;
273	MCalibrationBlindCam bndcam;
274	MCalibrationChargePINDiode pind;
275	MCalibrationRelTimeCam tmcam;
276	MCalibrationHiLoCam hilcam;
277	MCalibrationPulseTimeCam pulcam;
278
279	MBadPixelsCam badpix;
280
281	TObjArray interlacedcont;
282	if (fIsInterlaced)
283	{
284	interlacedcont.Add(&ichcam);
285	interlacedcont.Add(&iqecam);
286	interlacedcont.Add(&iblcam);
287	interlacedcont.Add(&itmcam);
288	interlacedcont.Add(&ibdcam);
289	interlacedcont.Add(&icncam);
290	interlacedcont.Add(&hchacam);
291	if (IsUseBlindPixel())
292	interlacedcont.Add(&hbndcam);
293	if (IsUsePINDiode())
294	interlacedcont.Add(&hpndiod);
295	if (fIsRelTimesUpdate)
296	interlacedcont.Add(&hrelcam);
297	}
298
299	MExtractor *extractor1=fExtractor;
300	MExtractor *extractor2=0;
301	MExtractor *extractor3=0;
302	TString geom;
303
304	TObjArray calibcont;
305	calibcont.Add(&calcam);
306	calibcont.Add(&qecam);
307	calibcont.Add(&bndcam);
308	calibcont.Add(&tmcam);
309	if (IsUseBlindPixel())
310	calibcont.Add(&bndcam);
311
312	if (!ReadCalibration(calibcont, badpix, extractor2, extractor3, geom))
313	return kFALSE;
314
315	*fLog << all;
316	if (!geom.IsNull())
317	*fLog << inf << "Camera geometry found in file: " << geom << endl;
318	else
319	*fLog << inf << "No Camera geometry found using default <MGeomCamMagic>" << endl;
320
321	if (extractor3)
322	{
323	*fLog << underline << "Signal Extractor found in calibration file" << endl;
324	extractor3->Print();
325	*fLog << endl;
326	}
327	else
328	*fLog << inf << "No Signal Extractor: ExtractSignal in file." << endl;
329
330
331	if (extractor1)
332	{
333	*fLog << underline << "Modified Signal Extractor set by user." << endl;
334	extractor1->Print();
335	*fLog << endl;
336	}
337	else
338	{
339	*fLog << inf << "No modified Signal Extractor set by user... using ExtractSignal." << endl;
340	extractor1 = extractor3 ? (MExtractor*)extractor3->Clone() : 0;
341	}
342
343	if (extractor2)
344	{
345	*fLog << underline << "Time Extractor found in calibration file" << endl;
346	extractor2->Print();
347	*fLog << endl;
348	}
349	else
350	*fLog << inf << "No Time Extractor: ExtractTime in file." << endl;
351
352	// This is necessary for the case in which it is not in the files
353	MBadPixelsCam badcam;
354	icncam.SetBadPixels(&badpix);
355
356	// Setup Parlist
357	MParList plist;
358	plist.AddToList(this); // take care of fDisplay!
359	plist.AddToList(&badcam);
360	plist.AddToList(&hilcam);
361	plist.AddToList(&calibcont); // Using AddToList(TObjArray *)
362	plist.AddToList(&interlacedcont); // Using AddToList(TObjArray *)
363	plist.AddToList(&pulcam);
364
365	// Setup Tasklist
366	MTaskList tlist;
367	plist.AddToList(&tlist);
368
369	MReadReports readreal;
370	readreal.AddTree("Events", "MTime.", MReadReports::kMaster);
371	readreal.AddTree("Trigger");
372	readreal.AddTree("Camera");
373	readreal.AddTree("Drive");
374	readreal.AddTree("CC");
375	readreal.AddTree("Currents");
376
377	MReadMarsFile readmc("Events");
378	readmc.DisableAutoScheme();
379
380	MRawFileRead rawread(NULL);
381
382	MRead *read = 0;
383	switch (GetDataFlag())
384	{
385	case kIsUseRawData: read = &rawread; break;
386	case kIsUseMC: read = &readmc; break;
387	case kIsUseRootData: read = &readreal; break;
388	}
389	read->AddFiles(iter);
390
391	const TString fname(Form("%s{s/_D_/_Y_}{s/\\.raw$/.root}{s/\\.raw\\.gz$/.root}", fPathOut.Data()));
392
393
394	// Skips MC which have no contents. This are precisely the
395	// events which fullfilled the MC Lvl1 trigger and an
396	// arbitrary cut (typically at 50phe) to speed up simulation
397	MContinue contmc("MRawEvtData.GetNumPixels<0.5", "ContEmptyMC");
398
399	//MPointingPosInterpolate pextr;
400	//pextr.AddFiles(&iter);
401
402	MGeomApply apply; // Only necessary to create geometry
403	if (!geom.IsNull())
404	apply.SetGeometry(geom);
405	MBadPixelsMerge merge(&badpix);
406
407	// Make sure that pedcamab has the correct name
408	pedcamab.SetName("MPedestalFundamental");
409	pedcamextr.SetName("MPedestalFromExtractorRndm");
410	pedcambias.SetName("MPedestalFromExtractor");
411	plist.AddToList(&pedcamextr);
412	plist.AddToList(&pedcambias);
413	plist.AddToList(&pedcamab);
414
415	MArrivalTimeCam timecam;
416	plist.AddToList(&timecam);
417
418	// Check for interleaved events
419	MCalibrationPatternDecode caldec;
420	MTriggerPatternDecode decode;
421
422	// This will make that for data with version less than 5, where
423	// trigger patterns were not yet correct, all the events in the real
424	// data file will be processed. In any case there are no interleaved
425	// calibration events in such data, so this is fine.
426	MFTriggerPattern ftp;
427	ftp.SetDefault(kTRUE);
428	// ftp.RequireCalibration();
429	ftp.DenyCalibration();
430	ftp.DenyPedestal();
431	// ftp.DenyPinDiode();
432	ftp.SetInverted();
433
434	// This will skip interleaved calibration events and pedestal events (if any)
435	// --> tlist2
436	MContinue conttp(&ftp, "ContTrigPattern");
437
438	// Create the pedestal subtracted raw-data
439	MPedestalSubtract pedsub;
440	pedsub.SetPedestalCam(&pedcamab);
441
442	// Do signal and pedestal calculation
443	MPedCalcFromLoGain pedlo1("MPedCalcFundamental");
444	pedlo1.SetPedestalUpdate(kTRUE);
445	pedlo1.SetNamePedestalCamOut("MPedestalFundamental");
446
447	MPedCalcFromLoGain pedlo2("MPedCalcWithExtractorRndm");
448	pedlo2.SetPedestalUpdate(kTRUE);
449	pedlo2.SetRandomCalculation(kTRUE);
450	pedlo2.SetNamePedestalCamIn("MPedestalFundamental");
451	pedlo2.SetNamePedestalCamOut("MPedestalFromExtractorRndm");
452
453	MPedCalcFromLoGain pedlo3("MPedCalcWithExtractor");
454	pedlo3.SetPedestalUpdate(kTRUE);
455	pedlo3.SetRandomCalculation(kFALSE);
456	pedlo3.SetNamePedestalCamIn("MPedestalFundamental");
457	pedlo3.SetNamePedestalCamOut("MPedestalFromExtractor");
458
459	if (extractor1)
460	{
461	extractor1->SetPedestals(&pedcamab);
462
463	// Setup to use the hi-gain extraction window in the lo-gain
464	// range (the start of the lo-gain range is added automatically
465	// by MPedCalcFromLoGain)
466	//
467	// The window size of the extractor is not yet initialized,
468	// so we have to stick to the extraction range
469	const Int_t f = extractor1->GetHiGainFirst();
470	const Int_t l = extractor1->GetHiGainLast();
471	const Int_t w = (l-f+1)&~1;
472
473	pedlo1.SetExtractWindow(f, w);
474
475	if (extractor1->InheritsFrom("MExtractTimeAndCharge"))
476	{
477	pedlo2.SetExtractor((MExtractTimeAndCharge*)extractor1);
478	pedlo3.SetExtractor((MExtractTimeAndCharge*)extractor1);
479	/*
480	const Int_t win = ((MExtractTimeAndCharge*)extractor1)->GetWindowSizeHiGain();
481	pedlo1.SetExtractWindow(15, win);
482	pedlo2.SetExtractWindow(15, win//obsolete//);
483	pedlo3.SetExtractWindow(15, win//obsolete//);
484	*/
485	}
486	else
487	{
488	/*
489	// FIXME: How to get the fixed value 15 automatically?
490	const Int_t f = (Int_t)(15.5+extractor1->GetHiGainFirst());
491	const Int_t n = (Int_t)(15.5+extractor1->GetNumHiGainSamples());
492	pedlo1.SetExtractWindow(f, n);
493	pedlo2.SetExtractWindow(f, n);
494	pedlo3.SetExtractWindow(f, n);
495	*/
496	pedlo2.SetExtractWindow(f, w);
497	pedlo3.SetExtractWindow(f, w);
498
499	}
500	}
501	if (extractor2)
502	extractor2->SetPedestals(&pedcamab);
503
504	if (extractor3)
505	extractor3->SetPedestals(&pedcamab);
506
507	MFCosmics fcosmics;
508	fcosmics.SetNamePedestalCam("MPedestalFundamental");
509	MContinue contcos(&fcosmics, "ContTrigEvts");
510	contcos.SetInverted();
511
512	//MMcPedestalCopy pcopy;
513	MTaskEnv taskenv1("ExtractSignal");
514	MTaskEnv taskenv2("ExtractTime");
515	MTaskEnv taskenv3("ExtractInterlaced");
516	taskenv1.SetDefault(extractor1);
517	taskenv2.SetDefault(extractor2);
518	taskenv3.SetDefault(extractor3);
519
520	//
521	// This is new calibration to photo-electrons, hard-coded
522	// as decided at the Wuerzburg software meeting 26.01.05
523	//
524	MCalibrateData calib;
525	calib.SetSignalType(MCalibrateData::kPhe);
526	calib.AddPedestal("Fundamental");
527	calib.AddPedestal("FromExtractor");
528	calib.AddPedestal("FromExtractorRndm");
529	calib.SetPedestalFlag(MCalibrateData::kEvent);
530	//----------------------------------------------------------
531
532	MExtractPINDiode pinext;
533	MExtractBlindPixel bldext;
534
535	MFTriggerPattern fcalib("CalibFilter");
536	fcalib.SetDefault(kFALSE);
537	fcalib.RequireCalibration();
538
539	MCalibrationChargeCalc chcalc;
540	chcalc.SetExtractor(extractor3);
541
542	MCalibrationRelTimeCalc recalc;
543	MCalibCalcFromPast pacalc;
544
545	pinext.SetPedestals(&pedcamab);
546	bldext.SetPedestals(&pedcamab);
547	chcalc.SetPedestals(&pedcamextr);
548
549	pacalc.SetChargeCalc(&chcalc);
550	if (fIsRelTimesUpdate)
551	pacalc.SetRelTimeCalc(&recalc);
552	pacalc.SetCalibrate(&calib);
553
554	//
555	// Intensity Calibration histogramming
556	//
557	MFillH filpin(&hpndiod, "MExtractedSignalPINDiode", "FillPINDiode");
558	MFillH filbnd(&hbndcam, "MExtractedSignalBlindPixel", "FillBlindCam");
559	MFillH filcam(&hchacam, "MExtractedSignalCam", "FillChargeCam");
560	MFillH filtme(&hrelcam, "MArrivalTimeCam", "FillRelTime");
561	MFillH filhil(&hilocam, "MExtractedSignalCam", "FillHiLoRatio");
562	MFillH filpul(&hpulcam, "MRawEvtData", "FillPulseTime");
563	filpin.SetBit(MFillH::kDoNotDisplay);
564	filbnd.SetBit(MFillH::kDoNotDisplay);
565	filcam.SetBit(MFillH::kDoNotDisplay);
566	filtme.SetBit(MFillH::kDoNotDisplay);
567	filhil.SetBit(MFillH::kDoNotDisplay);
568	filpul.SetBit(MFillH::kDoNotDisplay);
569
570	MCalibrateRelTimes caltm;
571	MBadPixelsCalc bpcal;
572	MBadPixelsTreat treat;
573
574	bpcal.SetNamePedPhotCam("MPedPhotFromExtractor");
575	treat.AddNamePedPhotCam("MPedPhotFundamental");
576	treat.AddNamePedPhotCam("MPedPhotFromExtractor");
577	treat.AddNamePedPhotCam("MPedPhotFromExtractorRndm");
578	if (!extractor2 && !extractor1->InheritsFrom("MExtractTimeAndCharge"))
579	treat.SetProcessTimes(kFALSE);
580
581	MHCamEvent evt0( 0, "PedFLG", "Fundamental Pedestal from Lo Gain;;P [cnts/sl]");
582	MHCamEvent evt1( 2, "PedRmsFLG", "RMS from Extractor applied to ped.;;\\sigma_{p} [cnts/sl]");
583	MHCamEvent evt2( 0, "Extra'd", "Extracted Signal;;S [cnts/sl]");
584	// MHCamEvent evt3(4, "PedPhot", "Calibrated Pedestal;;P [phe]");
585	MHCamEvent evt4( 5, "PedRMS", "Calibrated RMS from Extractor applied to ped.;;\\sigma_{p} [phe]");
586	MHCamEvent evt5( 0, "Interp'd", "Interpolated Signal scaled with A/A_{0};;S [phe]");
587	MHCamEvent evt6(102, "Unsuitable", "Fraction of unsuitable events per Pixel;;[1]");
588	// MHCamEvent evt7( 6, "Times", "Calibrated Arrival Time;;T [fadc sl]");
589	MHCamEvent evt8( 0, "Conv", "Calibration Conv. Factors;;[phe/fadc cnts]");
590	MHCamEvent evt9( 7, "PulsePos", "Pulse Position of cosmics (>50phe);;T");
591	MHCamEvent evtR( 4, "HiLoCal", "Hi-/Lo-Gain ratio;;Ratio");
592	MHCamEvent evtO( 7, "HiLoOff", "Lo-/Hi-Gain Offset;;Offset");
593	evt6.SetThreshold();
594
595	MFillH fill0(&evt0, "MPedestalFundamental", "FillPedFLG");
596	MFillH fill1(&evt1, "MPedestalFromExtractorRndm", "FillPedRmsFLG");
597	MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtracted");
598	// MFillH fill3(&evt3, "MPedPhotFundamental", "FillPedPhot");
599	MFillH fill4(&evt4, "MPedPhotFromExtractorRndm", "FillPedRMS");
600	MFillH fill5(&evt5, "MSignalCam", "FillInterpolated");
601	MFillH fill6(&evt6, "MBadPixelsCam", "FillUnsuitable");
602	// MFillH fill7(&evt7, "MSignalCam", "FillTimes");
603	MFillH fill8(&evt8, "MCalibrationIntensityConstCam", "FillConv");
604	MFillH fill9(&evt9, "MSignalCam", "FillPulse");
605	MFillH fillR(&evtR, "MExtractedSignalCam", "FillHiLoCal");
606	MFillH fillO(&evtO, "MArrivalTimeCam", "FillHiLoOff");
607
608	MTaskEnv fillflorian("FinalFantasy");
609	fillflorian.SetDefault();
610
611	// The second rule is for the case reading raw-files!
612	MWriteRootFile write(2, fname, fOverwrite?"RECREATE":"NEW");
613	// Run Header
614	write.AddContainer("MRawRunHeader", "RunHeaders");
615	write.AddContainer("MBadPixelsCam", "RunHeaders");
616	write.AddContainer("MGeomCam", "RunHeaders");
617	// Monte Carlo Headers
618	write.AddContainer("MMcRunHeader", "RunHeaders", kFALSE);
619	write.AddContainer("MMcFadcHeader", "RunHeaders", kFALSE);
620	write.AddContainer("MMcTrigHeader", "RunHeaders", kFALSE);
621	write.AddContainer("MMcConfigRunHeader", "RunHeaders", kFALSE);
622	write.AddContainer("MMcCorsikaRunHeader", "RunHeaders", kFALSE);
623	// Monte Carlo
624	write.AddContainer("MMcEvt", "Events", kFALSE);
625	write.AddContainer("MMcTrig", "Events", kFALSE);
626	// Data tree
627	write.AddContainer("MSignalCam", "Events");
628	// write.AddContainer("MPedPhotFundamental", "Events");
629	write.AddContainer("MPedPhotFromExtractor", "Events");
630	write.AddContainer("MPedPhotFromExtractorRndm", "Events");
631	write.AddContainer("MTime", "Events", kFALSE);
632	write.AddContainer("MRawEvtHeader", "Events");
633	// Slow-Control: Current-tree
634	write.AddContainer("MTimeCurrents", "Currents", kFALSE);
635	write.AddContainer("MCameraDC", "Currents", kFALSE);
636	write.AddContainer("MReportCurrents", "Currents", kFALSE);
637	// Slow-Control: Camera-tree
638	write.AddContainer("MReportCamera", "Camera", kFALSE);
639	write.AddContainer("MTimeCamera", "Camera", kFALSE);
640	write.AddContainer("MCameraAUX", "Camera", kFALSE);
641	write.AddContainer("MCameraCalibration", "Camera", kFALSE);
642	write.AddContainer("MCameraCooling", "Camera", kFALSE);
643	write.AddContainer("MCameraHV", "Camera", kFALSE);
644	write.AddContainer("MCameraLV", "Camera", kFALSE);
645	write.AddContainer("MCameraLids", "Camera", kFALSE);
646	// Slow-Control: Trigger-tree
647	write.AddContainer("MReportTrigger", "Trigger", kFALSE);
648	write.AddContainer("MTimeTrigger", "Trigger", kFALSE);
649	// Slow-Control: Drive-tree
650	write.AddContainer("MReportDrive", "Drive", kFALSE);
651	write.AddContainer("MTimeDrive", "Drive", kFALSE);
652	// Slow-Control: Central Control-tree
653	write.AddContainer("MReportCC", "CC", kFALSE);
654	write.AddContainer("MTimeCC", "CC", kFALSE);
655
656	// Write the special MC tree
657	MWriteRootFile writemc(2, fname, fOverwrite?"RECREATE":"NEW");
658	writemc.SetName("WriteMC");
659	writemc.AddContainer("MMcEvtBasic", "OriginalMC");
660
661	// Now setup tasklist for events
662	MTaskList tlist2;
663
664	tlist2.AddToList(&caldec);
665	tlist2.AddToList(&decode);
666	tlist2.AddToList(&apply);
667	tlist2.AddToList(&merge);
668	tlist2.AddToList(&pedsub);
669	tlist2.AddToList(&pedlo1);
670	tlist2.AddToList(&pedlo2);
671	tlist2.AddToList(&pedlo3);
672	//-----------------------------------------------------------
673
674	MTaskList tlist3;
675	tlist3.SetFilter(&fcalib);
676
677	if (fIsInterlaced)
678	{
679	tlist2.AddToList(&fcalib);
680	tlist2.AddToList(&tlist3);
681
682	if (IsUsePINDiode())
683	tlist3.AddToList(&pinext);
684	if (IsUseBlindPixel())
685	tlist3.AddToList(&bldext);
686	tlist3.AddToList(&taskenv3);
687	tlist3.AddToList(&pacalc);
688	tlist3.AddToList(&filcam);
689	if (fIsRelTimesUpdate)
690	tlist3.AddToList(&filtme);
691	if (IsUseBlindPixel())
692	tlist3.AddToList(&filbnd);
693	if (IsUsePINDiode())
694	tlist3.AddToList(&filpin);
695	tlist3.AddToList(&chcalc);
696	if (fIsRelTimesUpdate)
697	tlist3.AddToList(&recalc);
698	}
699
700	// Continue for all non-cosmic events
701	tlist2.AddToList(&conttp);
702	if (extractor1)
703	tlist2.AddToList(&taskenv1);
704	if (extractor2)
705	tlist2.AddToList(&taskenv2);
706	tlist2.AddToList(&fill0);
707	tlist2.AddToList(&fill1);
708	tlist2.AddToList(&contcos);
709	if (fIsHiLoCalibration)
710	{
711	plist.AddToList(&hilocam);
712	tlist2.AddToList(&filhil);
713	}
714	if (fIsPulsePosCheck)
715	{
716	plist.AddToList(&hpulcam);
717	tlist2.AddToList(&filpul);
718	}
719
720	tlist2.AddToList(&fill2);
721	tlist2.AddToList(&calib);
722	if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
723	tlist2.AddToList(&caltm);
724	if (fIsInterlaced)
725	tlist2.AddToList(&fill8);
726	tlist2.AddToList(&bpcal);
727	tlist2.AddToList(&treat);
728	tlist2.AddToList(&fill6);
729	// tlist2.AddToList(&fill3);
730	tlist2.AddToList(&fill4);
731	tlist2.AddToList(&fill5);
732	//if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
733	// tlist2.AddToList(&fill7);
734	tlist2.AddToList(&fill9);
735	tlist2.AddToList(&fillR);
736	tlist2.AddToList(&fillO);
737
738	tlist2.AddToList(&fillflorian);
739
740	// Setup List for Drive-tree
741	//MPointingPosCalc pcalc;
742
743	// Now setup main tasklist
744	tlist.AddToList(read);
745
746	if (IsUseMC())
747	{
748	tlist.AddToList(&writemc);
749	tlist.AddToList(&contmc);
750	}
751
752	//if (IsUseRootData())
753	// tlist2.AddToList(&pextr);
754	tlist.AddToList(&tlist2, IsUseRootData() ? "Events" : "All");
755
756	//if (IsUseMC())
757	// tlist.AddToList(&pcalc, "Drive");
758
759	tlist.AddToList(&write);
760
761	// Create and setup the eventloop
762	MEvtLoop evtloop(fName);
763	evtloop.SetParList(&plist);
764	evtloop.SetDisplay(fDisplay);
765	evtloop.SetLogStream(fLog);
766	if (!SetupEnv(evtloop))
767	return kFALSE;
768
769	// Execute first analysis
770	const Bool_t rc = evtloop.Eventloop(fMaxEvents);
771
772	// make sure owned object are deleted
773	if (extractor1 && extractor1!=fExtractor)
774	delete extractor1;
775	if (extractor2)
776	delete extractor2;
777	if (extractor3)
778	delete extractor3;
779
780	// return if job failed
781	if (!rc)
782	{
783	*fLog << err << GetDescriptor() << ": Failed." << endl;
784	return kFALSE;
785	}
786
787	// if everything went ok write and display result
788	DisplayResult(plist);
789
790	if (fIsPixelCheck)
791	{
792	if (fIsPulsePosCheck)
793	hpulcam[fCheckedPixId].DrawClone("");
794
795	if (fIsHiLoCalibration)
796	hilocam[fCheckedPixId].DrawClone("");
797	}
798
799	interlacedcont.Add(&pulcam);
800
801	if (fIsHiLoCalibration)
802	interlacedcont.Add(&hilcam);
803
804	if (fIsPulsePosCheck)
805	interlacedcont.Add(plist.FindObject("MHCalibrationPulseTimeCam"));
806
807	if (fIsHiLoCalibration)
808	interlacedcont.Add(plist.FindObject("MHCalibrationHiLoCam"));
809
810	if (!WriteResult(interlacedcont))
811	return kFALSE;
812
813	// return if job went ok
814	*fLog << all << GetDescriptor() << ": Done." << endl;
815	*fLog << endl << endl;
816
817	return kTRUE;
818	}
819
820
821	void MJCalibrateSignal::DisplayResult(MParList &plist)
822	{
823	if (!fDisplay \|\| !fIsHiLoCalibration)
824	return;
825
826	MCalibrationHiLoCam hcam = (MCalibrationHiLoCam)plist.FindObject("MCalibrationHiLoCam");
827	MGeomCam geom = (MGeomCam)plist.FindObject("MGeomCam");
828	if (!hcam \|\| !geom)
829	return;
830
831	// Create histograms to display
832	MHCamera disp1(*geom, "HiLoConv", "Ratio Amplification HiGain vs. LoGain (Charges)");
833	MHCamera disp2(*geom, "HiLoDiff", "Arrival Time Diff. HiGain vs. LoGain (Times)");
834
835	disp1.SetCamContent(*hcam, 0);
836	disp1.SetCamError( *hcam, 1);
837	disp2.SetCamContent(*hcam, 5);
838	disp2.SetCamError( *hcam, 6);
839
840	disp1.SetYTitle("R [1]");
841	disp2.SetYTitle("\\Delta T [FADC sl.]");
842
843	TCanvas &c1 = fDisplay->AddTab("HiLoConv");
844	c1.Divide(2,3);
845
846	disp1.CamDraw(c1, 1, 2, 1);
847	disp2.CamDraw(c1, 2, 2, 1);
848	}
849

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