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source: trunk/MagicSoft/Mars/mjobs/MJCalibrateSignal.cc@ 8986

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Last change on this file since 8986 was 8986, checked in by tbretz, 16 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	!
20	! Copyright: MAGIC Software Development, 2000-2008
21	!
22	!
23	\* ======================================================================== */
24
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibrateSignal
28	//
29	// This class is reading the output written by callisto. It calibrates
30	// signal and time.
31	//
32	// The signal and time extractors are read from the callisto-output. In
33	// pricipal you could overwrite these default using the resource file,
34	// but this is NOT recommended!
35	//
36	/////////////////////////////////////////////////////////////////////////////
37	#include "MJCalibrateSignal.h"
38
39	#include <TEnv.h>
40	#include <TFile.h>
41
42	// Core
43	#include "MLog.h"
44	#include "MLogManip.h"
45
46	#include "MDirIter.h"
47	#include "MTaskList.h"
48	#include "MParList.h"
49	#include "MEvtLoop.h"
50
51	#include "MStatusDisplay.h"
52
53	// General containers
54	#include "MGeomCam.h"
55	#include "MBadPixelsCam.h"
56	#include "MCalibConstCam.h"
57	#include "MPedestalCam.h"
58	#include "MArrivalTimeCam.h"
59
60	// General histograms
61	#include "MH3.h"
62	#include "MHCamEvent.h"
63	#include "MHVsTime.h"
64
65	// Calibration containers
66	#include "MCalibrationQECam.h"
67	#include "MCalibrationBlindCam.h"
68	#include "MCalibrationChargeCam.h"
69	#include "MCalibrationRelTimeCam.h"
70	#include "MCalibrationChargePINDiode.h"
71
72	// Calibration histograms
73	#include "MHCalibrationChargeCam.h"
74	#include "MHCalibrationChargeBlindCam.h"
75	#include "MHCalibrationChargePINDiode.h"
76	#include "MHCalibrationRelTimeCam.h"
77
78	// Tasks
79	#include "MReadMarsFile.h"
80	#include "MRawFileRead.h"
81	#include "MTaskEnv.h"
82	#include "MContinue.h"
83	#include "MFillH.h"
84	#include "MGeomApply.h"
85	#include "MExtractTimeAndCharge.h"
86	#include "MTriggerPatternDecode.h"
87	#include "MCalibrationPatternDecode.h"
88	#include "MCalibrationChargeCalc.h"
89	#include "MCalibrationRelTimeCalc.h"
90	#include "MCalibCalcFromPast.h"
91	#include "MPedestalSubtract.h"
92	#include "MPedCalcFromLoGain.h"
93	#include "MCalibrateData.h"
94	#include "MExtractPINDiode.h"
95	#include "MExtractBlindPixel.h"
96	#include "MCalibrateRelTimes.h"
97	#include "MBadPixelsCalc.h"
98	#include "MBadPixelsTreat.h"
99	#include "MWriteRootFile.h"
100
101	// Filter
102	#include "MFTriggerPattern.h"
103	#include "MFCosmics.h"
104	#include "MFilterList.h"
105	#include "MFDataPhrase.h"
106
107	// Classes for writing movies
108	#include "MFEvtNumber.h"
109	#include "MMoviePrepare.h"
110	#include "MMovieWrite.h"
111	#include "MImgCleanStd.h"
112
113
114	ClassImp(MJCalibrateSignal);
115
116	using namespace std;
117
118	// --------------------------------------------------------------------------
119	//
120	// Default constructor.
121	//
122	// Sets:
123	// - fIsInterlaced to kTRUE
124	// - fIsRelTimesUpdate to kFALSE
125	// - fIsHiLoCalibration to kFALSE
126	//
127	MJCalibrateSignal::MJCalibrateSignal(const char name, const char title)
128	: fExtractor(0), fIsInterlaced(kTRUE), fIsRelTimesUpdate(kTRUE), fIsMovieMode(kFALSE)
129	{
130	fName = name ? name : "MJCalibrateSignal";
131	fTitle = title ? title : "Tool to calibrate data";
132	}
133
134	MJCalibrateSignal::~MJCalibrateSignal()
135	{
136	if (fExtractor)
137	delete fExtractor;
138	}
139
140	void MJCalibrateSignal::SetExtractor(const MExtractor *ext)
141	{
142	if (fExtractor)
143	delete fExtractor;
144
145	fExtractor = ext ? (MExtractor*)ext->Clone() : NULL;
146	}
147
148	Bool_t MJCalibrateSignal::WriteResult() const
149	{
150	if (IsNoStorage() \|\| fIsMovieMode)
151	return kTRUE;
152
153	// FIXME: This is not nice because it will update the signal
154	// file always. Which might make the usage outside of
155	// callisto difficult.
156	TObjArray cont;
157	cont.Add(const_cast<TEnv*>(GetEnv()));
158	cont.Add(const_cast<MSequence*>(&fSequence));
159
160	if (fDisplay)
161	{
162	TString title = "-- Calibrate Signal: ";
163	title += fSequence.GetSequence();
164	title += " --";
165	fDisplay->SetTitle(title, kFALSE);
166
167	cont.Add(fDisplay);
168	}
169
170	const TString name(Form("signal%08d.root", fSequence.GetSequence()));
171	return WriteContainer(cont, name, "UPDATE");
172	}
173
174	Bool_t MJCalibrateSignal::ReadCalibration(TObjArray &l, MBadPixelsCam &cam, MExtractor* &ext2, MExtractor* &ext3, TString &geom) const
175	{
176	TString fname = Form("%s/calib%08d.root", fPathIn.Data(), fSequence.GetSequence());
177
178	*fLog << inf << "Reading from file: " << fname << endl;
179
180	TFile file(fname, "READ");
181	if (!file.IsOpen())
182	{
183	*fLog << err << dbginf << "ERROR - Could not open file " << fname << endl;
184	return kFALSE;
185	}
186
187	TObject *o = file.Get("ExtractSignal");
188	if (o && !o->InheritsFrom(MExtractor::Class()))
189	{
190	*fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
191	return kFALSE;
192	}
193	ext3 = o ? (MExtractor*)o->Clone() : NULL;
194
195	o = file.Get("ExtractTime");
196	if (o && !o->InheritsFrom(MExtractor::Class()))
197	{
198	*fLog << err << dbginf << "ERROR - ExtractTime read from " << fname << " doesn't inherit from MExtractor!" << endl;
199	return kFALSE;
200	}
201	ext2 = o ? (MExtractor*)o->Clone() : NULL;
202	if (!ext3 && !ext2)
203	{
204	*fLog << err << dbginf << "ERROR - Neither ExtractSignal nor ExrtractTime found in " << fname << "!" << endl;
205	return kFALSE;
206	}
207
208	o = file.Get("MGeomCam");
209	if (o && !o->InheritsFrom(MGeomCam::Class()))
210	{
211	*fLog << err << dbginf << "ERROR - MGeomCam read from " << fname << " doesn't inherit from MGeomCam!" << endl;
212	return kFALSE;
213	}
214	geom = o ? o->ClassName() : "";
215
216	TObjArray cont(l);
217	cont.Add(&cam);
218	return ReadContainer(cont);
219	}
220
221	// --------------------------------------------------------------------------
222	//
223	// MJCalibration allows to setup several option by a resource file:
224	// MJCalibrateSignal.RawData: yes,no
225	//
226	// For more details see the class description and the corresponding Getters
227	//
228	Bool_t MJCalibrateSignal::CheckEnvLocal()
229	{
230	SetInterlaced(GetEnv("Interlaced", fIsInterlaced));
231	SetRelTimesUpdate(GetEnv("RelTimesUpdate", fIsRelTimesUpdate));
232	SetMovieMode(GetEnv("MovieMode", fIsMovieMode));
233
234	return MJCalib::CheckEnvLocal();
235	}
236
237	#include "MParameterCalc.h" // FIXME
238	Bool_t MJCalibrateSignal::Process(MPedestalCam &pedcamab, MPedestalCam &pedcambias,
239	MPedestalCam &pedcamextr)
240	{
241	if (!fSequence.IsValid())
242	{
243	*fLog << err << "ERROR - Sequence invalid..." << endl;
244	return kFALSE;
245	}
246
247	*fLog << inf;
248	fLog->Separator(GetDescriptor());
249	*fLog << "Calculate calibrated data from Sequence #";
250	*fLog << fSequence.GetSequence() << endl << endl;
251
252
253	//if (!CheckEnv())
254	// return kFALSE;
255
256	CheckEnv();
257
258	// --------------------------------------------------------------------------------
259
260	MDirIter iter;
261	if (fSequence.IsValid())
262	{
263	if (fSequence.SetupDatRuns(iter, 0, !fSequence.IsMonteCarlo())<=0)
264	return kFALSE;
265	}
266
267	// Read File
268	MHCalibrationChargeCam hchacam;
269	MHCalibrationChargeBlindCam hbndcam;
270	MHCalibrationChargePINDiode hpndiod;
271	MHCalibrationRelTimeCam hrelcam;
272	//MHCalibrationHiLoCam hilocam;
273	//MHCalibrationPulseTimeCam hpulcam;
274
275	hchacam.SetOscillations(kFALSE);
276	hbndcam.SetOscillations(kFALSE);
277	hrelcam.SetOscillations(kFALSE);
278
279	MCalibrationChargeCam calcam;
280	MCalibrationQECam qecam;
281	MCalibrationBlindCam bndcam;
282	MCalibrationChargePINDiode pind;
283	MCalibrationRelTimeCam tmcam;
284	//MCalibrationHiLoCam hilcam;
285	//MCalibrationPulseTimeCam pulcam;
286
287	MBadPixelsCam badpix;
288
289	TObjArray interlacedcont;
290	if (fIsInterlaced)
291	{
292	interlacedcont.Add(&hchacam);
293	if (IsUseBlindPixel())
294	interlacedcont.Add(&hbndcam);
295	if (IsUsePINDiode())
296	interlacedcont.Add(&hpndiod);
297	if (fIsRelTimesUpdate)
298	interlacedcont.Add(&hrelcam);
299	}
300
301	MExtractor *extractor1=fExtractor;
302	MExtractor *extractor2=0;
303	MExtractor *extractor3=0;
304	TString geom;
305
306	TObjArray calibcont;
307	calibcont.Add(&calcam);
308	calibcont.Add(&qecam);
309	calibcont.Add(&bndcam);
310	calibcont.Add(&tmcam);
311	if (IsUseBlindPixel())
312	calibcont.Add(&bndcam);
313
314	if (!ReadCalibration(calibcont, badpix, extractor2, extractor3, geom))
315	return kFALSE;
316
317	*fLog << all;
318	if (!geom.IsNull())
319	*fLog << inf << "Camera geometry found in file: " << geom << endl;
320	else
321	*fLog << inf << "No Camera geometry found using default <MGeomCamMagic>" << endl;
322
323	if (extractor3)
324	{
325	*fLog << underline << "Signal Extractor found in calibration file" << endl;
326	extractor3->Print();
327	*fLog << endl;
328	}
329	else
330	*fLog << inf << "No Signal Extractor: ExtractSignal in file." << endl;
331
332
333	if (extractor1)
334	{
335	*fLog << underline << "Modified Signal Extractor set by user." << endl;
336	extractor1->Print();
337	*fLog << endl;
338	}
339	else
340	{
341	*fLog << inf << "No modified Signal Extractor set by user... using ExtractSignal." << endl;
342	extractor1 = extractor3 ? (MExtractor*)extractor3->Clone() : 0;
343	}
344
345	if (extractor2)
346	{
347	*fLog << underline << "Time Extractor found in calibration file" << endl;
348	extractor2->Print();
349	*fLog << endl;
350	}
351	else
352	*fLog << inf << "No Time Extractor: ExtractTime in file." << endl;
353
354	// This is necessary for the case in which it is not in the files
355	MCalibConstCam constcam;
356
357	//MBadPixelsCam badcam;
358	constcam.SetBadPixels(&badpix);
359
360	// Setup Parlist
361	MParList plist;
362	plist.AddToList(this); // take care of fDisplay!
363	plist.AddToList(&badpix);
364	plist.AddToList(&constcam);
365	//plist.AddToList(&hilcam);
366	plist.AddToList(&calibcont); // Using AddToList(TObjArray *)
367	plist.AddToList(&interlacedcont); // Using AddToList(TObjArray *)
368	//plist.AddToList(&pulcam);
369
370	// Setup Tasklist
371	MTaskList tlist;
372	plist.AddToList(&tlist);
373
374	MReadMarsFile readmc("Events");
375	readmc.DisableAutoScheme();
376
377	MRawFileRead rawread(NULL);
378	rawread.SetForceMode(); // Ignore broken time-stamps
379
380	MRead read = fSequence.IsMonteCarlo() ? (MRead)&readmc : (MRead*)&rawread;
381	read->AddFiles(iter);
382
383	const TString fname(Form("%s{s/_D_/_Y_}{s/\\.raw$/.root}{s/\\.raw\\.gz$/.root}", fPathOut.Data()));
384
385	// Skips MC which have no contents. This are precisely the
386	// events which fullfilled the MC Lvl1 trigger and an
387	// arbitrary cut (typically at 50phe) to speed up simulation
388	MContinue contmc("MRawEvtData.GetNumPixels<0.5", "ContEmptyMC");
389
390	//MPointingPosInterpolate pextr;
391	//pextr.AddFiles(&iter);
392
393	MGeomApply apply; // Only necessary to create geometry
394	if (!geom.IsNull())
395	apply.SetGeometry(geom);
396	//MBadPixelsMerge merge(&badpix);
397
398	// Make sure that pedcamab has the correct name
399	pedcamab.SetName("MPedestalFundamental");
400	pedcamextr.SetName("MPedestalFromExtractorRndm");
401	pedcambias.SetName("MPedestalFromExtractor");
402	plist.AddToList(&pedcamextr);
403	plist.AddToList(&pedcambias);
404	plist.AddToList(&pedcamab);
405
406	MArrivalTimeCam timecam;
407	plist.AddToList(&timecam);
408
409	// Check for interleaved events
410	MCalibrationPatternDecode caldec;
411	MTriggerPatternDecode decode;
412
413	MH3 hpat("MRawRunHeader.fRunNumber", "MTriggerPattern.GetUnprescaled");
414	hpat.SetWeight("1./MRawRunHeader.GetRunLength");
415	hpat.SetName("TrigPat");
416	hpat.SetTitle("Rate of the trigger pattern [Hz];Run Number;Trigger Pattern;Rate [Hz]");
417	hpat.InitLabels(MH3::kLabelsXY);
418	//hpat.DefineLabelsY("1=Lvl1;2=Cal;3=Cal;4=Lvl2;5=Cal;7=Cal;8=Ped;9=Ped+Trig;13=Ped+Trig;16=Pin;32=Sum");
419	hpat.DefaultLabelY("UNKNOWN");
420	hpat.DefineLabelY( 0, "0"); // 0: No pattern
421	hpat.DefineLabelY( 1, "Trig"); // 1: Lvl1
422	hpat.DefineLabelY( 2, "Cal"); // 2: Cal
423	hpat.DefineLabelY( 3, "Cal"); // Cal+Lvl1
424	hpat.DefineLabelY( 4, "Trig"); // 4: Lvl2
425	hpat.DefineLabelY( 5, "Trig"); // Lvl2+Lvl1
426	hpat.DefineLabelY( 7, "Cal"); // Lvl2+Cal+Lvl
427	hpat.DefineLabelY( 8, "Ped"); // 8: Ped
428	hpat.DefineLabelY( 9, "Ped+Trig"); // Ped+Lvl1
429	hpat.DefineLabelY(10, "Ped+Cal"); // Ped+Cal
430	hpat.DefineLabelY(12, "Ped+Trig"); // Ped+Lvl2
431	hpat.DefineLabelY(13, "Ped+Trig"); // Ped+Lvl2+Lvl1
432	hpat.DefineLabelY(16, "Pin"); // 16: Pin
433	hpat.DefineLabelY(32, "Sum"); // 32: Sum
434	hpat.DefineLabelY(33, "Trig"); // Sum+Lvl1
435	hpat.DefineLabelY(34, "Cal"); // Sum+Cal
436	hpat.DefineLabelY(35, "Cal"); // Sum+Cal+Lvl1
437	hpat.DefineLabelY(36, "Trig"); // Sum+Lvl2
438	hpat.DefineLabelY(37, "Trig"); // Sum+Lvl1+Lvl2
439	hpat.DefineLabelY(39, "Cal"); // Sum+Lvl2+Cal+Lvl1
440
441	MFillH fillpat(&hpat, "", "FillPattern");
442	fillpat.SetDrawOption("box");
443
444	// This will make that for data with version less than 5, where
445	// trigger patterns were not yet correct, all the events in the real
446	// data file will be processed. In any case there are no interleaved
447	// calibration events in such data, so this is fine.
448	// We allow only cosmics triggered events to pass (before prescaling)
449	MFTriggerPattern fcalped("SelectTrigEvts");
450	fcalped.SetInverted();
451	fcalped.SetDefault(kTRUE);
452	fcalped.DenyAll();
453	fcalped.AllowTriggerLvl1();
454	fcalped.AllowTriggerLvl2();
455	fcalped.AllowSumTrigger();
456
457	// This will skip interleaved events with a cal- or ped-trigger
458	MContinue contcalped(&fcalped, "ContNonTrigger");
459
460	// Create the pedestal subtracted raw-data
461	MPedestalSubtract pedsub;
462	pedsub.SetPedestalCam(&pedcamab);
463
464	// Do signal and pedestal calculation
465	MPedCalcFromLoGain pedlo1("MPedCalcFundamental");
466	pedlo1.SetPedestalUpdate(kTRUE);
467	pedlo1.SetNamePedestalCamOut("MPedestalFundamental");
468
469	MPedCalcFromLoGain pedlo2("MPedCalcWithExtractorRndm");
470	pedlo2.SetPedestalUpdate(kTRUE);
471	pedlo2.SetRandomCalculation(kTRUE);
472	pedlo2.SetNamePedestalCamOut("MPedestalFromExtractorRndm");
473
474	MPedCalcFromLoGain pedlo3("MPedCalcWithExtractor");
475	pedlo3.SetPedestalUpdate(kTRUE);
476	pedlo3.SetRandomCalculation(kFALSE);
477	pedlo3.SetNamePedestalCamOut("MPedestalFromExtractor");
478
479	if (!extractor1)
480	{
481	*fLog << err << "ERROR - extractor1 == NULL" << endl;
482	return kFALSE;
483	}
484
485	// Setup to use the hi-gain extraction window in the lo-gain
486	// range (the start of the lo-gain range is added automatically
487	// by MPedCalcFromLoGain)
488	//
489	// The window size of the extractor is not yet initialized,
490	// so we have to stick to the extraction range
491	//
492	// Even if we would like to use a range comparable to the
493	// hi-gain extraction we use the lo-gain range to make
494	// sure that exclusions (eg. due to switching noise)
495	// are correctly handled.
496	//
497	pedlo1.SetRangeFromExtractor(*extractor1);
498
499	if (extractor1->InheritsFrom("MExtractTimeAndCharge"))
500	{
501	pedlo2.SetExtractor((MExtractTimeAndCharge*)extractor1);
502	pedlo3.SetExtractor((MExtractTimeAndCharge*)extractor1);
503	}
504	else
505	{
506	pedlo2.SetRangeFromExtractor(*extractor1);
507	pedlo3.SetRangeFromExtractor(*extractor1);
508	}
509
510	//------------------------------
511	//
512	// this is the filter to find pedestal events. For the Siegen FADC
513	// these are all events which are not calibration events because
514	// the pedestal is extracted from the lo-gain signal. For MUX
515	// data this are artifiially triggered events with the pedestal
516	// trigger flag, and for safty without Lvl1 or Lvl2 flag)
517	//
518	// For the time "before" the trigger pattern all events (Siegen FADC)
519	// can be considered to be pedestal, because this was also the time
520	// without artifially calibration events
521	//
522	// Deny or allow is done before prescaling.
523	//
524	MFTriggerPattern fped("SelectPedestals");
525	fped.SetDefault(kTRUE);
526	fped.DenyCalibration();
527	if (!extractor1->HasLoGain())
528	{
529	fped.DenyAll();
530	fped.RequirePedestal();
531	}
532
533	//------------------------------
534	//
535	// Apply a filter against cosmics (this is to make sure that the
536	// trigger system was working properly and no empty events survive)
537	// For every event 5% of the pixel must not be empty. In PostProcess
538	// an error is raised if more than 50% of the events were skipped.
539	//
540	MFCosmics fcosmicscal;
541	fcosmicscal.SetNamePedestalCam("MPedestalFundamental"); //CORRECT?
542	fcosmicscal.SetMaxEmptyPixels(0.05);
543	fcosmicscal.SetMaxAcceptedFraction(0.5);
544
545	MContinue contcoscal(&fcosmicscal, "ContCosmicsCal");
546
547	//------------------------------
548	/*
549	MFCosmics fcosmicsped; // Def=20% empty pixels
550	fcosmicsped.SetNamePedestalCam("MPedestalFundamental"); //CORRECT?
551	MContinue contcosped(&fcosmicsped, "ContCosmicsPed");
552	contcosped.SetInverted();
553	*/
554
555	//------------------------------
556	//
557	// Thie signal extractors
558	//
559	MTaskEnv taskenv1("ExtractSignal");
560	MTaskEnv taskenv2("ExtractTime");
561	MTaskEnv taskenv3("ExtractInterlaced");
562	taskenv1.SetDefault(extractor1);
563	taskenv2.SetDefault(extractor2);
564	taskenv3.SetDefault(extractor3);
565
566	//
567	// This is new calibration to photo-electrons, hard-coded
568	// as decided at the Wuerzburg software meeting 26.01.05
569	//
570	MCalibrateData calib;
571	calib.SetSignalType(MCalibrateData::kPhe);
572	//calib.AddPedestal("Fundamental");
573	calib.AddPedestal("FromExtractor");
574	calib.AddPedestal("FromExtractorRndm");
575	calib.SetPedestalFlag(MCalibrateData::kEvent);
576
577	//----------------------------------------------------------
578
579	MExtractPINDiode pinext;
580	MExtractBlindPixel bldext;
581
582	// Execute for all events with the calibration trigger. If no
583	// trigger pattern is available do not execute it
584	// The selection is done before prescaling.
585	MFTriggerPattern fcalib("SelectCalEvts");
586	fcalib.SetDefault(kFALSE);
587	fcalib.DenyAll();
588	fcalib.RequireCalibration();
589	fcalib.AllowTriggerLvl1();
590	fcalib.AllowTriggerLvl2();
591	fcalib.AllowSumTrigger();
592
593	MCalibrationChargeCalc chcalc;
594	chcalc.SetContinousCalibration();
595	chcalc.SetExtractor(extractor3);
596
597	MCalibrationRelTimeCalc recalc;
598	MCalibCalcFromPast pacalc;
599
600	chcalc.SetPedestals(&pedcamextr);
601
602	pacalc.SetChargeCalc(&chcalc);
603	if (fIsRelTimesUpdate)
604	pacalc.SetRelTimeCalc(&recalc);
605	pacalc.SetCalibrate(&calib);
606
607	//
608	// Calibration histogramming
609	//
610	MFillH filpin(&hpndiod, "MExtractedSignalPINDiode", "FillPINDiode");
611	MFillH filbnd(&hbndcam, "MExtractedSignalBlindPixel", "FillBlindCam");
612	MFillH filcam(&hchacam, "MExtractedSignalCam", "FillChargeCam");
613	MFillH filtme(&hrelcam, "MArrivalTimeCam", "FillRelTime");
614	//MFillH filhil(&hilocam, "MExtractedSignalCam", "FillHiLoRatio");
615	//MFillH filpul(&hpulcam, "MRawEvtData", "FillPulseTime");
616	filpin.SetBit(MFillH::kDoNotDisplay);
617	filbnd.SetBit(MFillH::kDoNotDisplay);
618	filcam.SetBit(MFillH::kDoNotDisplay);
619	filtme.SetBit(MFillH::kDoNotDisplay);
620	//filhil.SetBit(MFillH::kDoNotDisplay);
621	//filpul.SetBit(MFillH::kDoNotDisplay);
622
623	MCalibrateRelTimes caltm;
624	MBadPixelsCalc bpcal;
625	MBadPixelsTreat treat;
626
627	//bpcal.SetNamePedPhotCam("MPedPhotFromExtractor");
628	bpcal.SetNamePedPhotCam("MPedPhotFromExtractorRndm");
629
630	//treat.AddNamePedPhotCam("MPedPhotFundamental");
631	treat.AddNamePedPhotCam("MPedPhotFromExtractor");
632	treat.AddNamePedPhotCam("MPedPhotFromExtractorRndm");
633	if (!extractor2 && !extractor1->InheritsFrom("MExtractTimeAndCharge"))
634	treat.SetProcessTimes(kFALSE);
635
636	MHCamEvent evt0( 0, "PedFLG", "Fundamental Pedestal from Lo Gain;;P [cnts/sl]");
637	MHCamEvent evt1( 2, "PedRmsFLG", "RMS from Extractor applied to ped.;;\\sigma_{p} [cnts/sl]");
638	MHCamEvent evt2( 0, "Extra'd", "Extracted Signal;;S [cnts/sl]");
639	// MHCamEvent evt3(4, "PedPhot", "Calibrated Pedestal;;P [phe]");
640	MHCamEvent evt4( 5, "PedRMS", "Calibrated RMS from Extractor applied to ped.;;\\sigma_{p} [phe]");
641	MHCamEvent evt5( 0, "Interp'd", "Interpolated Signal scaled with A/A_{0};;S [phe]");
642	MHCamEvent evt6(102, "Unsuitable", "Fraction of unsuitable events per Pixel;;[1]");
643	// MHCamEvent evt7( 6, "Times", "Calibrated Arrival Time;;T [fadc sl]");
644	MHCamEvent evt8( 0, "Conv", "Calibration Conv. Factors;;[phe/cnts]");
645	MHCamEvent evt9( 7, "PulsePos", "Pulse Position of cosmics (>50phe);;T [ns]");
646	MHCamEvent evtR( 4, "HiLoCal", "Hi-/Lo-Gain ratio;;Ratio");
647	MHCamEvent evtO( 7, "HiLoOff", "Lo-/Hi-Gain Offset;;Offset");
648	MHCamEvent evtC( 4, "CalPos", "Extracted pulse position of calibration pulses;;T [sl]");
649	//MHCamEvent evt2(0, "Extra'd", "Extracted Calibration Signal;;S [cnts/sl]");
650	evt2.SetErrorSpread(kFALSE);
651	evt5.SetErrorSpread(kFALSE);
652	evt6.SetErrorSpread(kFALSE);
653	evt6.SetThreshold();
654
655	MFillH fill0(&evt0, "MPedestalFundamental", "FillPedFLG");
656	MFillH fill1(&evt1, "MPedestalFromExtractorRndm", "FillPedRmsFLG");
657	MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtracted");
658	// MFillH fill3(&evt3, "MPedPhotFundamental", "FillPedPhot");
659	MFillH fill4(&evt4, "MPedPhotFromExtractorRndm", "FillPedRMS");
660	MFillH fill5(&evt5, "MSignalCam", "FillInterpolated");
661	MFillH fill6(&evt6, "MBadPixelsCam", "FillUnsuitable");
662	// MFillH fill7(&evt7, "MSignalCam", "FillTimes");
663	MFillH fill8(&evt8, "MCalibConstCam", "FillConv");
664	MFillH fill9(&evt9, "MSignalCam", "FillPulsePos");
665	MFillH fillR(&evtR, "MExtractedSignalCam", "FillHiLoCal");
666	MFillH fillO(&evtO, "MArrivalTimeCam", "FillHiLoOff");
667	MFillH fillC(&evtC, "MArrivalTimeCam", "FillCalPos");
668	//MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtractedSignal");
669
670	MHVsTime histbp("MBadPixelsCam.GetNumUnsuitable");
671	histbp.SetName("BadPixTm");
672	histbp.SetTitle("Number of unsuitable pixels;;N");
673	histbp.SetMinimum(0);
674
675	MHVsTime histdp("MSignalCam.GetNumPixelsUnmapped");
676	histdp.SetName("DeadPixTm");
677	histdp.SetTitle("Number of dead/unmapped pixels;;N");
678	histdp.SetMinimum(0);
679
680	// Task to fill the histogram
681	MFillH fillB(&histbp, "MTime", "FillBadPixTm");
682	MFillH fillD(&histdp, "MTime", "FillDeadPixTm");
683	fillB.SetNameTab("BadPixTm");
684	fillD.SetNameTab("DeadPixTm");
685
686	/*
687	MFillH fillP("MHPulseShape", "", "FillPulseShape");
688	fillP.SetNameTab("Pulse");
689	*/
690
691	/*
692	MHVsTime hbadpix("MBadPixelsCam.GetNumUnsuitable");
693	hbadpix.SetNumEvents(50);
694	MFillH fillB(&hbadpix, "MTime");
695	*/
696
697	MTaskEnv fillflorian("FinalFantasy");
698	fillflorian.SetDefault();
699
700	// The second rule is for the case reading raw-files!
701	MWriteRootFile write(2, fname, fOverwrite?"RECREATE":"NEW");
702	// Run Header
703	write.AddContainer("MRawRunHeader", "RunHeaders");
704	// write.AddContainer("MBadPixelsCam", "RunHeaders");
705	write.AddContainer("MGeomCam", "RunHeaders");
706	// Monte Carlo Headers
707	write.AddContainer("MMcRunHeader", "RunHeaders", kFALSE);
708	write.AddContainer("MMcFadcHeader", "RunHeaders", kFALSE);
709	write.AddContainer("MMcTrigHeader", "RunHeaders", kFALSE);
710	write.AddContainer("MMcConfigRunHeader", "RunHeaders", kFALSE);
711	write.AddContainer("MMcCorsikaRunHeader", "RunHeaders", kFALSE);
712	// Monte Carlo
713	write.AddContainer("MMcEvt", "Events", kFALSE);
714	write.AddContainer("MMcTrig", "Events", kFALSE);
715	// Data tree
716	write.AddContainer("MSignalCam", "Events");
717	// write.AddContainer("MPedPhotFundamental", "Events");
718	write.AddContainer("MPedPhotFromExtractor", "Events");
719	write.AddContainer("MPedPhotFromExtractorRndm", "Events");
720	write.AddContainer("MTime", "Events", kFALSE);
721	write.AddContainer("MRawEvtHeader", "Events");
722	write.AddContainer("MTriggerPattern", "Events");
723
724	// Trees with slow-control information (obsolete
725	// if we don't read merpped root-files)
726	write.AddTree("Trigger", kFALSE);
727	write.AddTree("Drive", kFALSE);
728	write.AddTree("CC", kFALSE);
729	write.AddTree("Pyrometer", kFALSE);
730	write.AddTree("Currents", kFALSE);
731	write.AddTree("Camera", kFALSE);
732	// Slow-Control: Current-tree
733	write.AddContainer("MCameraDC", "Currents", kFALSE);
734	// Slow-Control: Camera-tree
735	write.AddContainer("MCameraAUX", "Camera", kFALSE);
736	write.AddContainer("MCameraCalibration", "Camera", kFALSE);
737	write.AddContainer("MCameraCooling", "Camera", kFALSE);
738	write.AddContainer("MCameraHV", "Camera", kFALSE);
739	write.AddContainer("MCameraLV", "Camera", kFALSE);
740	write.AddContainer("MCameraLids", "Camera", kFALSE);
741
742	// Write the special MC tree
743	MWriteRootFile writemc(2, fname, fOverwrite?"RECREATE":"NEW");
744	writemc.SetName("WriteMC");
745	writemc.AddContainer("MMcEvtBasic", "OriginalMC");
746
747	// Write the special calib tree
748	/*
749	MWriteRootFile writecal(2, fname, fOverwrite?"RECREATE":"NEW");
750	writecal.SetName("WriteCalib");
751	writecal.AddContainer("MBadPixelsCam", "Calib");
752	writecal.AddContainer("MCalibrationChargeCam", "Calib");
753	writecal.AddContainer("MCalibrationRelTimeCam", "Calib");
754	*/
755
756	//-----------------------------------------------------------
757	// Build tasklist
758
759	MTaskList tlist2;
760
761	tlist2.AddToList(&caldec);
762	tlist2.AddToList(&decode);
763	tlist2.AddToList(&fillpat);
764	tlist2.AddToList(&apply);
765	//tlist2.AddToList(&merge);
766	tlist2.AddToList(&pedsub);
767
768	//-----------------------------------------------------------
769	// Pedestal extraction
770
771	MTaskList tlist3;
772	tlist3.SetFilter(&fped); // Deny events with cal-trigger
773
774	tlist2.AddToList(&fped); // If no lo-gain require ped-trigger
775	tlist2.AddToList(&tlist3); // and deny cosmics (lvl1/2) trigger
776
777	tlist3.AddToList(&pedlo1); // extract pedestal events
778	tlist3.AddToList(&pedlo2); // extract pedestal events
779	tlist3.AddToList(&pedlo3); // extract pedestal events
780	tlist3.AddToList(&fill0); // fill pedestal events
781	tlist3.AddToList(&fill1); // fill pedestal events
782
783	//-----------------------------------------------------------
784	// Calibration
785
786	MTaskList tlist4;
787	tlist4.SetFilter(&fcalib); // process only events with cal-trigger
788
789	//MFDataPhrase filcalco("MCalibrationConstCam.IsReadyToSave>0.5", "CalibConstFilter");
790	if (fIsInterlaced)
791	{
792	// The task list is executed for all events with the calibration
793	// trigger
794	tlist2.AddToList(&fcalib); // MFTriggerPattern
795	tlist2.AddToList(&tlist4);
796
797	tlist4.AddToList(&taskenv3);
798	tlist4.AddToList(&contcoscal); // MContinue/ContCosmicsCal
799	if (IsUsePINDiode())
800	tlist4.AddToList(&pinext); // MExtractPINDiode
801	if (IsUseBlindPixel())
802	tlist4.AddToList(&bldext); // MExtractBlindPixel
803	tlist4.AddToList(&pacalc); // MCalibCalcFromPast
804	/*
805	tlist3.AddToList(&filcalco); // CalibConstFilter (IsReadyToSave)
806	fill8.SetFilter(&filcalco);
807	tlist3.AddToList(&fill8); // FillConvUpd
808	*/
809
810	tlist4.AddToList(&filcam); // FillChargeCam
811	if (fIsRelTimesUpdate)
812	tlist4.AddToList(&filtme); // FillRelTime
813	if (IsUseBlindPixel())
814	tlist4.AddToList(&filbnd); // FillBlindCam
815	if (IsUsePINDiode())
816	tlist4.AddToList(&filpin); // FillPINDiode
817	tlist4.AddToList(&chcalc); // MCalibrationChargeCalc
818	if (fIsRelTimesUpdate)
819	tlist4.AddToList(&recalc); // MCalibrationRelTimeCam
820
821	tlist4.AddToList(&fillC); // FillCalPos
822
823	//tlist3.AddToList(&writecal); // MWriteRootFile
824	}
825
826	//-----------------------------------------------------------
827	// Cosmics extraction
828
829	// remove all events with a cal- or ped-trigger (no matter
830	// whether they have lvl1 or lvl2 or any other flag
831	tlist2.AddToList(&contcalped);
832
833	// Extract the signal
834	if (extractor1)
835	tlist2.AddToList(&taskenv1);
836
837	// remove all events which definitly don't have a signal
838	// using MFCosmics (ContCosmicsPed)
839	// tlist2.AddToList(&contcosped);
840
841	// Extract arrival time (if a dedicated extrator given)
842	if (extractor2)
843	tlist2.AddToList(&taskenv2);
844
845	/*
846	if (fIsHiLoCalibration)
847	{
848	plist.AddToList(&hilocam);
849	tlist2.AddToList(&filhil);
850	}
851
852	if (fIsPulsePosCheck)
853	{
854	plist.AddToList(&hpulcam);
855	tlist2.AddToList(&filpul);
856	}
857	*/
858
859	tlist2.AddToList(&fill2);
860	tlist2.AddToList(&fill8); // FillConv
861	tlist2.AddToList(&calib); // MCalibrateData
862	if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
863	tlist2.AddToList(&caltm);
864
865	tlist2.AddToList(&bpcal); // MBadPixelsCalc
866	tlist2.AddToList(&treat); // MBadPixelsTreat
867	tlist2.AddToList(&fill6);
868	// tlist2.AddToList(&fill3);
869	tlist2.AddToList(&fill4);
870	tlist2.AddToList(&fill5);
871	//if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
872	// tlist2.AddToList(&fill7);
873	tlist2.AddToList(&fill9);
874	if (!fSequence.IsMonteCarlo())
875	{
876	tlist2.AddToList(&fillB);
877	tlist2.AddToList(&fillD);
878	}
879	if (extractor1->HasLoGain())
880	{
881	tlist2.AddToList(&fillR);
882	tlist2.AddToList(&fillO);
883	}
884
885	/*
886	MFillH fillC("MHCleaning", "", "FillClean");
887	tlist2.AddToList(&fillC);
888
889	//tlist2.AddToList(&fillP);
890	*/
891
892	// ----- Start: Code for encoding movies -----
893
894	MMoviePrepare movprep;
895	MMovieWrite movwrite;
896	movprep.SetRangeFromExtractor(*extractor1);
897
898	//MFDataPhrase movfilt("MMovieData.fMax>150");
899	MFDataPhrase movfilt("MMovieData.fMax>5*MMovieData.fMedianPedestalRms", "MovieFilter");
900
901	MImgCleanStd movclean(8.5, 4.0);
902	movclean.SetMethod(MImgCleanStd::kAbsolute);
903
904	//movprep.SetFilter(&evtnum);
905	movclean.SetFilter(&movfilt);
906	movwrite.SetFilter(&movfilt);
907
908	MTaskList tlistmov("MovieEncoder");
909	tlistmov.AddToList(&movprep);
910	tlistmov.AddToList(&movfilt);
911	tlistmov.AddToList(&movclean);
912	tlistmov.AddToList(&movwrite);
913
914	MFEvtNumber evtnum;
915	//evtnum.SetSelector("ThetaSquared.fVal<0.04");
916	//evtnum.SetFileName("ganymed00000001.root");
917	tlistmov.SetFilter(&evtnum);
918
919	if (fIsMovieMode)
920	{
921	tlist2.AddToList(&evtnum);
922	tlist2.AddToList(&tlistmov);
923	}
924
925	// ----- End: Code for encoding movies -----
926
927	tlist2.AddToList(&fillflorian);
928
929	// Setup List for Drive-tree
930	//MPointingPosCalc pcalc;
931
932	// Now setup main tasklist
933	tlist.AddToList(read);
934
935	if (fSequence.IsMonteCarlo())
936	{
937	if (!fIsMovieMode && !HasNullOut())
938	tlist.AddToList(&writemc);
939	tlist.AddToList(&contmc);
940	}
941
942	//if (IsUseRootData())
943	// tlist2.AddToList(&pextr);
944	tlist.AddToList(&tlist2, fSequence.IsMonteCarlo() ? "Events" : "All");
945
946	//if (fSequence.IsMonteCarlo())
947	// tlist.AddToList(&pcalc, "Drive");
948
949	if (!fIsMovieMode && !HasNullOut())
950	tlist.AddToList(&write);
951
952	// Create and setup the eventloop
953	MEvtLoop evtloop(fName);
954	evtloop.SetParList(&plist);
955	evtloop.SetDisplay(fDisplay);
956	evtloop.SetLogStream(fLog);
957	if (!SetupEnv(evtloop))
958	return kFALSE;
959
960	// Execute first analysis
961	const Bool_t rc = evtloop.Eventloop(fMaxEvents);
962
963	// make sure owned object are deleted
964	if (extractor1 && extractor1!=fExtractor)
965	delete extractor1;
966	if (extractor2)
967	delete extractor2;
968	if (extractor3)
969	delete extractor3;
970
971	// return if job failed
972	if (!rc)
973	{
974	*fLog << err << GetDescriptor() << ": Failed." << endl;
975	return kFALSE;
976	}
977
978	// if everything went ok write and display result
979	DisplayResult(plist);
980
981	/*
982	if (fIsPixelCheck)
983	{
984	if (fIsPulsePosCheck)
985	hpulcam[fCheckedPixId].DrawClone("");
986
987	//if (fIsHiLoCalibration)
988	// hilocam[fCheckedPixId].DrawClone("");
989	}
990	interlacedcont.Add(&pulcam);
991	*/
992
993	//if (fIsHiLoCalibration)
994	// interlacedcont.Add(&hilcam);
995
996	//if (fIsPulsePosCheck)
997	// interlacedcont.Add(plist.FindObject("MHCalibrationPulseTimeCam"));
998
999	//if (fIsHiLoCalibration)
1000	// interlacedcont.Add(plist.FindObject("MHCalibrationHiLoCam"));
1001
1002	if (!WriteResult())
1003	return kFALSE;
1004
1005	// return if job went ok
1006	*fLog << all << GetDescriptor() << ": Done." << endl;
1007	*fLog << endl << endl;
1008
1009	return kTRUE;
1010	}
1011
1012
1013	void MJCalibrateSignal::DisplayResult(MParList &plist)
1014	{
1015	/*
1016	if (!fDisplay \|\| !fIsHiLoCalibration)
1017	return;
1018
1019	MCalibrationHiLoCam hcam = (MCalibrationHiLoCam)plist.FindObject("MCalibrationHiLoCam");
1020	MGeomCam geom = (MGeomCam)plist.FindObject("MGeomCam");
1021	if (!hcam \|\| !geom)
1022	return;
1023
1024	// Create histograms to display
1025	MHCamera disp1(*geom, "HiLoConv", "Ratio Amplification HiGain vs. LoGain (Charges)");
1026	MHCamera disp2(*geom, "HiLoDiff", "Arrival Time Diff. HiGain vs. LoGain (Times)");
1027
1028	disp1.SetCamContent(*hcam, 0);
1029	disp1.SetCamError( *hcam, 1);
1030	disp2.SetCamContent(*hcam, 5);
1031	disp2.SetCamError( *hcam, 6);
1032
1033	disp1.SetYTitle("R [1]");
1034	disp2.SetYTitle("\\Delta T [FADC sl.]");
1035
1036	TCanvas &c1 = fDisplay->AddTab("HiLoConv");
1037	c1.Divide(2,3);
1038
1039	disp1.CamDraw(c1, 1, 2, 1);
1040	disp2.CamDraw(c1, 2, 2, 1);
1041	*/
1042	}
1043

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