1 | /* ======================================================================== *\
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2 | !
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3 | ! *
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4 | ! * This file is part of MARS, the MAGIC Analysis and Reconstruction
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5 | ! * Software. It is distributed to you in the hope that it can be a useful
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6 | ! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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7 | ! * It is distributed WITHOUT ANY WARRANTY.
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8 | ! *
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9 | ! * Permission to use, copy, modify and distribute this software and its
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10 | ! * documentation for any purpose is hereby granted without fee,
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11 | ! * provided that the above copyright notice appear in all copies and
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12 | ! * that both that copyright notice and this permission notice appear
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13 | ! * in supporting documentation. It is provided "as is" without express
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14 | ! * or implied warranty.
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15 | ! *
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16 | !
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17 | !
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18 | ! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
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19 | !
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20 | ! Copyright: MAGIC Software Development, 2000-2004
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21 | !
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22 | !
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23 | \* ======================================================================== */
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24 |
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25 | /////////////////////////////////////////////////////////////////////////////
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26 | //
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27 | // MJCalibration
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28 | //
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29 | /////////////////////////////////////////////////////////////////////////////
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30 | #include "MJCalibration.h"
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31 |
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32 | #include <TF1.h>
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33 | #include <TFile.h>
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34 | #include <TStyle.h>
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35 | #include <TCanvas.h>
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36 | #include <TSystem.h>
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37 |
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38 | #include "MLog.h"
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39 | #include "MLogManip.h"
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40 |
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41 | #include "MRunIter.h"
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42 | #include "MParList.h"
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43 | #include "MTaskList.h"
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44 | #include "MEvtLoop.h"
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45 |
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46 | #include "MHCamera.h"
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47 |
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48 | #include "MPedestalCam.h"
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49 | #include "MCalibrationCam.h"
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50 |
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51 | #include "MReadMarsFile.h"
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52 | #include "MGeomApply.h"
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53 | #include "MBadPixelsMerge.h"
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54 | #include "MExtractSignal.h"
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55 | #include "MExtractSignal2.h"
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56 | #include "MCalibrationCalc.h"
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57 | #include "MFCosmics.h"
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58 | #include "MContinue.h"
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59 |
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60 | #include "MJCalibration.h"
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61 | #include "MStatusDisplay.h"
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62 |
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63 | ClassImp(MJCalibration);
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64 | using namespace std;
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65 |
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66 | MJCalibration::MJCalibration(const char *name, const char *title) : fRuns(0)
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67 | {
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68 | fName = name ? name : "MJCalibration";
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69 | fTitle = title ? title : "Tool to create a pedestal file (MPedestalCam)";
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70 | }
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71 |
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72 | void MJCalibration::DrawProjection(MHCamera *obj1, Int_t fit) const
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73 | {
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74 |
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75 | TH1D *obj2 = (TH1D*)obj1->Projection();
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76 | obj2->Draw();
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77 | obj2->SetBit(kCanDelete);
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78 |
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79 | const Double_t min = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
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80 | const Double_t max = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
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81 | const Double_t integ = obj2->Integral("width")/2.5;
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82 | const Double_t mean = obj2->GetMean();
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83 | const Double_t rms = obj2->GetRMS();
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84 | const Double_t width = max-min;
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85 |
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86 | const TString dgausformula = "([0]-[3])/[2]*exp(-0.5*(x-[1])*(x-[1])/[2]/[2])"
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87 | "+[3]/[5]*exp(-0.5*(x-[4])*(x-[4])/[5]/[5])";
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88 |
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89 | const TString tgausformula = "([0]-[3]-[6])/[2]*exp(-0.5*(x-[1])*(x-[1])/[2]/[2])"
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90 | "+[3]/[5]*exp(-0.5*(x-[4])*(x-[4])/[5]/[5])"
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91 | "+[6]/[8]*exp(-0.5*(x-[7])*(x-[7])/[8]/[8])";
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92 | TF1 *f=0;
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93 | switch (fit)
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94 | {
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95 | case 1:
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96 | f = new TF1("sgaus", "gaus(0)", min, max);
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97 | f->SetLineColor(kYellow);
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98 | f->SetBit(kCanDelete);
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99 | f->SetParNames("Area", "#mu", "#sigma");
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100 | f->SetParameters(integ/rms, mean, rms);
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101 | f->SetParLimits(0, 0, integ);
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102 | f->SetParLimits(1, min, max);
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103 | f->SetParLimits(2, 0, width/1.5);
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104 |
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105 | obj2->Fit(f, "QLR");
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106 | break;
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107 |
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108 | case 2:
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109 | f = new TF1("dgaus",dgausformula.Data(),min,max);
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110 | f->SetLineColor(kYellow);
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111 | f->SetBit(kCanDelete);
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112 | f->SetParNames("A_{tot}", "#mu1", "#sigma1", "A2", "#mu2", "#sigma2");
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113 | f->SetParameters(integ,(min+mean)/2.,width/4.,
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114 | integ/width/2.,(max+mean)/2.,width/4.);
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115 | // The left-sided Gauss
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116 | f->SetParLimits(0,integ-1.5 , integ+1.5);
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117 | f->SetParLimits(1,min+(width/10.), mean);
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118 | f->SetParLimits(2,0 , width/2.);
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119 | // The right-sided Gauss
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120 | f->SetParLimits(3,0 , integ);
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121 | f->SetParLimits(4,mean, max-(width/10.));
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122 | f->SetParLimits(5,0 , width/2.);
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123 | obj2->Fit(f,"QLRM");
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124 | break;
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125 |
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126 | case 3:
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127 | f = new TF1("tgaus",tgausformula.Data(),min,max);
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128 | f->SetLineColor(kYellow);
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129 | f->SetBit(kCanDelete);
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130 | f->SetParNames("A_{tot}","#mu_{1}","#sigma_{1}",
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131 | "A_{2}","#mu_{2}","#sigma_{2}",
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132 | "A_{3}","#mu_{3}","#sigma_{3}");
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133 | f->SetParameters(integ,(min+mean)/2,width/4.,
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134 | integ/width/3.,(max+mean)/2.,width/4.,
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135 | integ/width/3.,mean,width/2.);
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136 | // The left-sided Gauss
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137 | f->SetParLimits(0,integ-1.5,integ+1.5);
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138 | f->SetParLimits(1,min+(width/10.),mean);
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139 | f->SetParLimits(2,width/15.,width/2.);
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140 | // The right-sided Gauss
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141 | f->SetParLimits(3,0.,integ);
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142 | f->SetParLimits(4,mean,max-(width/10.));
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143 | f->SetParLimits(5,width/15.,width/2.);
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144 | // The Gauss describing the outliers
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145 | f->SetParLimits(6,0.,integ);
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146 | f->SetParLimits(7,min,max);
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147 | f->SetParLimits(8,width/4.,width/1.5);
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148 | obj2->Fit(f,"QLRM");
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149 | break;
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150 |
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151 | case 4:
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152 | obj2->Fit("pol0", "Q");
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153 | obj2->GetFunction("pol0")->SetLineColor(kYellow);
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154 | break;
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155 |
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156 | case 9:
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157 | break;
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158 |
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159 | default:
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160 | obj2->Fit("gaus", "Q");
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161 | obj2->GetFunction("gaus")->SetLineColor(kYellow);
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162 | break;
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163 | }
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164 | }
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165 |
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166 | void MJCalibration::CamDraw(TCanvas &c, const Int_t x, const Int_t y, const MHCamera &cam1, const Int_t fit)
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167 | {
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168 | c.cd(x);
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169 | gPad->SetBorderMode(0);
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170 | MHCamera *obj1=(MHCamera*)cam1.DrawCopy("hist");
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171 | obj1->AddNotify(&fCalibrationCam);
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172 |
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173 | c.cd(x+y);
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174 | gPad->SetBorderMode(0);
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175 | obj1->Draw();
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176 |
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177 | if (!fit)
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178 | return;
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179 |
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180 | c.cd(x+2*y);
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181 | gPad->SetBorderMode(0);
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182 | DrawProjection(obj1, fit);
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183 | }
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184 |
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185 |
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186 | void MJCalibration::DisplayResult(MParList &plist)
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187 | {
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188 | if (!fDisplay)
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189 | return;
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190 |
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191 | //
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192 | // Update display
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193 | //
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194 | TString title = fDisplay->GetTitle();
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195 | title += "-- Calibration ";
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196 | title += fRuns->GetRunsAsString();
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197 | title += " --";
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198 | fDisplay->SetTitle(title);
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199 |
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200 | //
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201 | // Get container from list
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202 | //
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203 | MGeomCam &geomcam = *(MGeomCam*)plist.FindObject("MGeomCam");
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204 |
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205 | // Create histograms to display
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206 | MHCamera disp1 (geomcam, "Cal;Charge", "Fitted Mean Charges");
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207 | MHCamera disp2 (geomcam, "Cal;SigmaCharge", "Sigma of Fitted Charges");
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208 | MHCamera disp3 (geomcam, "Cal;FitProb", "Probability of Fit");
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209 | MHCamera disp4 (geomcam, "Cal;RSigma", "Reduced Sigmas");
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210 | MHCamera disp5 (geomcam, "Cal;RSigma/Charge", "Reduced Sigma per Charge");
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211 | MHCamera disp6 (geomcam, "Cal;FFactorPhe", "Nr. of Phe's (F-Factor Method)");
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212 | MHCamera disp7 (geomcam, "Cal;FFactorConv", "Conversion Factor (F-Factor Method)");
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213 | MHCamera disp8 (geomcam, "Cal;FFactorFFactor", "Total F-Factor (F-Factor Method)");
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214 | MHCamera disp9 (geomcam, "Cal;BlindPixPh", "Photon flux inside plexiglass (Blind Pixel Method)");
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215 | MHCamera disp10 (geomcam, "Cal;BlindPixConv", "Conversion Factor (Blind Pixel Method)");
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216 | MHCamera disp11 (geomcam, "Cal;BlindPixFFactor","Total F-Factor (Blind Pixel Method)");
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217 | MHCamera disp12 (geomcam, "Cal;PINDiodePh", "Photons flux outside plexiglass (PIN Diode Method)");
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218 | MHCamera disp13 (geomcam, "Cal;PINDiodeConv", "Conversion Factor (PIN Diode Method)");
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219 | MHCamera disp14 (geomcam, "Cal;PINDiodeFFactor","Total F-Factor (PIN Diode Method)");
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220 | MHCamera disp15 (geomcam, "Cal;Excluded", "Pixels previously excluded");
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221 | MHCamera disp16 (geomcam, "Cal;NotFitted", "Pixels that could not be fitted");
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222 | MHCamera disp17 (geomcam, "Cal;NotFitValid", "Pixels with not valid fit results");
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223 | MHCamera disp18 (geomcam, "Cal;Oscillation", "Oscillating Pixels");
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224 | MHCamera disp19 (geomcam, "Cal;Saturation", "Pixels with saturated Hi Gain");
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225 |
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226 |
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227 | // Fitted charge means and sigmas
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228 | disp1.SetCamContent(fCalibrationCam, 0);
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229 | disp1.SetCamError( fCalibrationCam, 1);
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230 | disp2.SetCamContent(fCalibrationCam, 2);
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231 | disp2.SetCamError( fCalibrationCam, 3);
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232 | // Fit probabilities
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233 | disp3.SetCamContent(fCalibrationCam, 4);
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234 |
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235 | // Reduced Sigmas and reduced sigmas per charge
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236 | disp4.SetCamContent(fCalibrationCam, 5);
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237 | disp4.SetCamError( fCalibrationCam, 6);
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238 | disp5.SetCamContent(fCalibrationCam, 7);
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239 | disp5.SetCamError( fCalibrationCam, 8);
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240 |
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241 | // F-Factor Method
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242 | disp6.SetCamContent(fCalibrationCam, 9);
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243 | disp6.SetCamError( fCalibrationCam, 10);
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244 | disp7.SetCamContent(fCalibrationCam, 11);
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245 | disp7.SetCamError( fCalibrationCam, 12);
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246 | disp8.SetCamContent(fCalibrationCam, 13);
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247 | disp8.SetCamError( fCalibrationCam, 14);
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248 |
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249 | /// Blind Pixel Method
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250 | disp9.SetCamContent(fCalibrationCam, 15);
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251 | disp9.SetCamError( fCalibrationCam, 16);
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252 | disp10.SetCamContent(fCalibrationCam,17);
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253 | disp10.SetCamError( fCalibrationCam,18);
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254 | disp11.SetCamContent(fCalibrationCam,19);
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255 | disp11.SetCamError( fCalibrationCam,20);
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256 |
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257 | // PIN Diode Method
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258 | disp12.SetCamContent(fCalibrationCam,21);
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259 | disp12.SetCamError( fCalibrationCam,22);
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260 | disp13.SetCamContent(fCalibrationCam,23);
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261 | disp13.SetCamError( fCalibrationCam,24);
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262 | disp14.SetCamContent(fCalibrationCam,25);
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263 | disp14.SetCamError( fCalibrationCam,26);
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264 |
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265 | // Pixels with defects
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266 | disp15.SetCamContent(fCalibrationCam,27);
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267 | disp16.SetCamContent(fCalibrationCam,28);
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268 | disp17.SetCamContent(fCalibrationCam,29);
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269 | disp18.SetCamContent(fCalibrationCam,30);
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270 |
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271 | // Lo Gain calibration
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272 | disp19.SetCamContent(fCalibrationCam,31);
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273 |
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274 |
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275 | disp1.SetYTitle("Charge [FADC units]");
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276 | disp2.SetYTitle("\\sigma_{Charge} [FADC units]");
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277 | disp3.SetYTitle("P_{Charge} [1]");
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278 |
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279 | disp4.SetYTitle("\\sqrt{\\sigma^{2}_{Charge} - RMS^{2}_{Ped}} [FADC Counts]");
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280 | disp5.SetYTitle("Reduced Sigma / Mean Charge [1]");
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281 |
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282 | disp6.SetYTitle("Nr. Photo-Electrons [1]");
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283 | disp7.SetYTitle("Conversion Factor [PhE/FADC Count]");
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284 | disp8.SetYTitle("\\sqrt{N_{PhE}}*\\sigma_{Charge}/\\mu_{Charge} [1]");
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285 |
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286 | disp9.SetYTitle("Photon flux [ph/mm^2]");
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287 | disp10.SetYTitle("Conversion Factor [Phot/FADC Count]");
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288 | disp11.SetYTitle("\\sqrt{N_{Ph}}*\\sigma_{Charge}/\\mu_{Charge} [1]");
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289 |
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290 | disp12.SetYTitle("Photon flux [ph/mm^2]");
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291 | disp13.SetYTitle("Conversion Factor [Phot/FADC Count]");
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292 | disp14.SetYTitle("\\sqrt{N_{Ph}}*\\sigma_{Charge}/\\mu_{Charge} [1]");
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293 |
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294 | disp15.SetYTitle("[1]");
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295 | disp16.SetYTitle("[1]");
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296 | disp17.SetYTitle("[1]");
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297 | disp18.SetYTitle("[1]");
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298 |
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299 | gStyle->SetOptStat(1111);
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300 | gStyle->SetOptFit();
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301 |
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302 | // Charges
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303 | TCanvas &c1 = fDisplay->AddTab("Fit.Charge");
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304 | c1.Divide(2, 3);
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305 |
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306 | CamDraw(c1, 1, 2, disp1, 2);
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307 | CamDraw(c1, 2, 2, disp2, 2);
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308 |
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309 | // Fit Probability
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310 | TCanvas &c2 = fDisplay->AddTab("Fit.Prob");
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311 | c2.Divide(1,3);
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312 |
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313 | CamDraw(c2, 1, 1, disp3, 4);
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314 |
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315 | // Reduced Sigmas
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316 | TCanvas &c3 = fDisplay->AddTab("Red.Sigma");
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317 | c3.Divide(2,3);
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318 |
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319 | CamDraw(c3, 1, 2, disp4, 2);
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320 | CamDraw(c3, 2, 2, disp5, 2);
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321 |
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322 | // F-Factor Method
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323 | TCanvas &c4 = fDisplay->AddTab("F-Factor");
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324 | c4.Divide(3,3);
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325 |
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326 | CamDraw(c4, 1, 3, disp6, 2);
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327 | CamDraw(c4, 2, 3, disp7, 2);
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328 | CamDraw(c4, 3, 3, disp8, 2);
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329 |
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330 | // Blind Pixel Method
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331 | TCanvas &c5 = fDisplay->AddTab("BlindPix");
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332 | c5.Divide(3, 3);
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333 |
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334 | CamDraw(c5, 1, 3, disp9, 9);
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335 | CamDraw(c5, 2, 3, disp10, 2);
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336 | CamDraw(c5, 3, 3, disp11, 2);
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337 |
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338 | // PIN Diode Method
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339 | TCanvas &c6 = fDisplay->AddTab("PINDiode");
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340 | c6.Divide(3,3);
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341 |
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342 | CamDraw(c6, 1, 3, disp12, 9);
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343 | CamDraw(c6, 2, 3, disp13, 2);
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344 | CamDraw(c6, 3, 3, disp14, 2);
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345 |
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346 | // Defects
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347 | TCanvas &c7 = fDisplay->AddTab("Defects");
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348 | c7.Divide(4,2);
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349 |
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350 | CamDraw(c7, 1, 4, disp15, 0);
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351 | CamDraw(c7, 2, 4, disp16, 0);
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352 | CamDraw(c7, 3, 4, disp17, 0);
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353 | CamDraw(c7, 4, 4, disp18, 0);
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354 |
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355 | // Lo Gain Calibration
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356 | TCanvas &c8 = fDisplay->AddTab("LowGain");
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357 | c8.Divide(1,3);
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358 |
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359 | CamDraw(c8, 1, 4, disp19, 0);
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360 |
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361 | }
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362 |
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363 | Bool_t MJCalibration::WriteResult()
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364 | {
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365 | if (fOutputPath.IsNull())
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366 | return kTRUE;
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367 |
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368 | const TString oname(GetOutputFile());
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369 |
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370 | *fLog << inf << "Writing to file: " << oname << endl;
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371 |
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372 | TFile file(oname, "UPDATE");
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373 |
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374 | if (fDisplay && fDisplay->Write()<=0)
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375 | {
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376 | *fLog << err << "Unable to write MStatusDisplay to " << oname << endl;
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377 | return kFALSE;
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378 | }
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379 |
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380 | if (fCalibrationCam.Write()<=0)
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381 | {
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382 | *fLog << err << "Unable to write MCalibrationCam to " << oname << endl;
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383 | return kFALSE;
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384 | }
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385 |
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386 | if (fBadPixels.Write()<=0)
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387 | {
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388 | *fLog << err << "Unable to write MBadPixelsCam to " << oname << endl;
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389 | return kFALSE;
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390 | }
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391 |
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392 | return kTRUE;
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393 |
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394 | }
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395 |
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396 | void MJCalibration::SetOutputPath(const char *path)
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397 | {
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398 | fOutputPath = path;
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399 | if (fOutputPath.EndsWith("/"))
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400 | fOutputPath = fOutputPath(0, fOutputPath.Length()-1);
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401 | }
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402 |
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403 | Bool_t MJCalibration::Process(MPedestalCam &pedcam)
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404 | {
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405 | if (!ReadCalibrationCam())
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406 | return ProcessFile(pedcam);
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407 |
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408 | return kTRUE;
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409 | }
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410 |
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411 | TString MJCalibration::GetOutputFile() const
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412 | {
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413 | if (!fRuns)
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414 | return "";
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415 |
|
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416 | return Form("%s/%s-F1.root", (const char*)fOutputPath, (const char*)fRuns->GetRunsAsFileName());
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417 | }
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418 |
|
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419 | Bool_t MJCalibration::ReadCalibrationCam()
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420 | {
|
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421 | const TString fname = GetOutputFile();
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422 |
|
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423 | if (gSystem->AccessPathName(fname, kFileExists))
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424 | {
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425 | *fLog << err << "Input file " << fname << " doesn't exist." << endl;
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426 | return kFALSE;
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---|
427 | }
|
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428 |
|
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429 | *fLog << inf << "Reading from file: " << fname << endl;
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430 |
|
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431 | TFile file(fname, "READ");
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432 | if (fCalibrationCam.Read()<=0)
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433 | {
|
---|
434 | *fLog << "Unable to read MCalibrationCam from " << fname << endl;
|
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435 | return kFALSE;
|
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436 | }
|
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437 |
|
---|
438 | if (file.FindKey("MBadPixelsCam"))
|
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439 | {
|
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440 | MBadPixelsCam bad;
|
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441 | if (bad.Read()<=0)
|
---|
442 | {
|
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443 | *fLog << "Unable to read MBadPixelsCam from " << fname << endl;
|
---|
444 | return kFALSE;
|
---|
445 | }
|
---|
446 | fBadPixels.Merge(bad);
|
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447 | }
|
---|
448 |
|
---|
449 | if (fDisplay /*&& !fDisplay->GetCanvas("Pedestals")*/) // FIXME!
|
---|
450 | fDisplay->Read();
|
---|
451 |
|
---|
452 | return kTRUE;
|
---|
453 | }
|
---|
454 |
|
---|
455 |
|
---|
456 | Bool_t MJCalibration::ProcessFile(MPedestalCam &pedcam)
|
---|
457 | {
|
---|
458 | if (!fRuns)
|
---|
459 | {
|
---|
460 | *fLog << err << "No Runs choosen... abort." << endl;
|
---|
461 | return kFALSE;
|
---|
462 | }
|
---|
463 | if (fRuns->GetNumRuns() != fRuns->GetNumEntries())
|
---|
464 | {
|
---|
465 | *fLog << err << "Number of files found doesn't metch number of runs... abort." << endl;
|
---|
466 | return kFALSE;
|
---|
467 | }
|
---|
468 |
|
---|
469 | *fLog << inf;
|
---|
470 | fLog->Separator(GetDescriptor());
|
---|
471 | *fLog << "Calculate MCalibrationCam from Runs " << fRuns->GetRunsAsString() << endl;
|
---|
472 | *fLog << endl;
|
---|
473 |
|
---|
474 | MReadMarsFile read("Events");
|
---|
475 | read.DisableAutoScheme();
|
---|
476 | static_cast<MRead&>(read).AddFiles(*fRuns);
|
---|
477 |
|
---|
478 | // Setup Tasklist
|
---|
479 | MParList plist;
|
---|
480 | plist.AddToList(&pedcam);
|
---|
481 | plist.AddToList(&fCalibrationCam);
|
---|
482 |
|
---|
483 | MTaskList tlist;
|
---|
484 | plist.AddToList(&tlist);
|
---|
485 |
|
---|
486 | MGeomApply apply;
|
---|
487 | MBadPixelsMerge merge(&fBadPixels);
|
---|
488 | // MExtractSignal extract; // Do not use this at the moment...
|
---|
489 | MExtractSignal2 extract;
|
---|
490 | MCalibrationCalc calcalc;
|
---|
491 |
|
---|
492 | //
|
---|
493 | // Apply a filter against cosmics
|
---|
494 | // (will have to be needed in the future
|
---|
495 | // when the calibration hardware-trigger is working)
|
---|
496 | //
|
---|
497 | MFCosmics cosmics;
|
---|
498 | MContinue cont(&cosmics);
|
---|
499 |
|
---|
500 | //
|
---|
501 | // As long, as we don't have digital modules,
|
---|
502 | // we have to set the color of the pulser LED by hand
|
---|
503 | //
|
---|
504 | calcalc.SetPulserColor(MCalibrationCalc::kECT1);
|
---|
505 | //calcalc.SkipBlindPixelFit();
|
---|
506 |
|
---|
507 | tlist.AddToList(&read);
|
---|
508 | tlist.AddToList(&apply);
|
---|
509 | tlist.AddToList(&merge);
|
---|
510 | tlist.AddToList(&extract);
|
---|
511 | tlist.AddToList(&cont);
|
---|
512 | tlist.AddToList(&calcalc);
|
---|
513 |
|
---|
514 | // Create and setup the eventloop
|
---|
515 | MEvtLoop evtloop(fName);
|
---|
516 | evtloop.SetParList(&plist);
|
---|
517 | evtloop.SetDisplay(fDisplay);
|
---|
518 | evtloop.SetLogStream(fLog);
|
---|
519 |
|
---|
520 | // Execute first analysis
|
---|
521 | if (!evtloop.Eventloop())
|
---|
522 | {
|
---|
523 | *fLog << err << GetDescriptor() << ": Failed." << endl;
|
---|
524 | return kFALSE;
|
---|
525 | }
|
---|
526 |
|
---|
527 | tlist.PrintStatistics();
|
---|
528 |
|
---|
529 | DisplayResult(plist);
|
---|
530 |
|
---|
531 | if (!WriteResult())
|
---|
532 | return kFALSE;
|
---|
533 |
|
---|
534 | *fLog << inf << GetDescriptor() << ": Done." << endl;
|
---|
535 |
|
---|
536 | return kTRUE;
|
---|
537 | }
|
---|