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Last change on this file since 5563 was 5562, checked in by tbretz, 20 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	! Author(s): Markus Gaug, 02/2004 <mailto:markus@ifae.es>
20	!
21	! Copyright: MAGIC Software Development, 2000-2004
22	!
23	!
24	\* ======================================================================== */
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibration
28	//
29	// Do one calibration loop over serious of runs with the same pulser
30	// colour and the same intensity. The following containers (rectangular) and
31	// tasks (ellipses) are called to produce an MCalibrationChargeCam and to
32	// update the MCalibrationQECam: (MCalibrate is not called from this class)
33	//
34	//Begin_Html
35	/*
36	<img src="images/CalibClasses.gif">
37	*/
38	//End_Html
39	//
40	// Different signal extractors can be set with the command SetExtractor()
41	// Only extractors deriving from MExtractor can be set, default is MExtractSlidingWindow
42	//
43	// Different arrival time extractors can be set with the command SetTimeExtractor()
44	// Only extractors deriving from MExtractTime can be set, default is MExtractTimeSpline
45	//
46	// At the end of the eventloop, plots and results are displayed, depending on
47	// the flags set (see DisplayResult())
48	//
49	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
50	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
51	// Otherwise, (default: SetNormalDisplay()), a good selection of plots is given
52	//
53	// If the flag SetDataCheck() is set, the calibration is used as in the data check at
54	// La Palma, which mean especially running on raw data files.
55	//
56	// The absolute light calibration devices Blind Pixel and PIN Diode can be switched on
57	// and off with the commands:
58	//
59	// - SetUseBlindPixel(Bool_t )
60	// - SetUsePINDiode(Bool_t )
61	//
62	// See also: MHCalibrationChargePix, MHCalibrationChargeCam, MHGausEvents
63	// MHCalibrationChargeBlindPix, MHCalibrationChargePINDiode
64	// MCalibrationChargePix, MCalibrationChargeCam, MCalibrationChargeCalc
65	// MCalibrationBlindPix, MCalibrationChargePINDiode,
66	// MCalibrationQECam, MBadPixelsPix, MBadPixelsCam
67	//
68	// If the flag RelTimeCalibration() is set, a calibration of the relative arrival
69	// times is also performed. The following containers (rectangular) and
70	// tasks (ellipses) are called to produce an MCalibrationRelTimeCam used by
71	// MCalibrateTime to correct timing offset between pixels: (MCalibrateTime is not
72	// called from this class)
73	//
74	//Begin_Html
75	/*
76	<img src="images/RelTimeClasses.gif">
77	*/
78	//End_Html
79	//
80	// Different arrival time extractors can be set directly with the command SetTimeExtractor(MExtractor *)
81	//
82	// See also: MHCalibrationRelTimePix, MHCalibrationRelTimeCam, MHGausEvents
83	// MCalibrationRelTimePix, MCalibrationRelTimeCam
84	// MBadPixelsPix, MBadPixelsCam
85	//
86	/////////////////////////////////////////////////////////////////////////////
87	#include "MJCalibration.h"
88
89	#include <TFile.h>
90	#include <TF1.h>
91	#include <TStyle.h>
92	#include <TCanvas.h>
93	#include <TSystem.h>
94	#include <TLine.h>
95	#include <TLatex.h>
96	#include <TLegend.h>
97	#include <TRegexp.h>
98	#include <TPaveText.h>
99	#include <TPaveStats.h>
100
101	#include "MLog.h"
102	#include "MLogManip.h"
103
104	#include "MRunIter.h"
105	#include "MSequence.h"
106	#include "MParList.h"
107	#include "MTaskList.h"
108	#include "MEvtLoop.h"
109
110	#include "MHCamera.h"
111	#include "MGeomCam.h"
112
113	#include "MPedestalCam.h"
114	#include "MCalibColorSteer.h"
115
116	#include "MCalibrationIntensityChargeCam.h"
117	#include "MCalibrationIntensityBlindCam.h"
118	#include "MCalibrationIntensityRelTimeCam.h"
119	#include "MCalibrationIntensityQECam.h"
120
121	#include "MCalibrationCam.h"
122	#include "MCalibrationQECam.h"
123	#include "MCalibrationQEPix.h"
124	#include "MCalibrationChargeCam.h"
125	#include "MCalibrationChargePix.h"
126	#include "MCalibrationChargePINDiode.h"
127	#include "MCalibrationBlindPix.h"
128	#include "MCalibrationBlindCam.h"
129	#include "MCalibrationBlindCamOneOldStyle.h"
130	#include "MCalibrationBlindCamTwoNewStyle.h"
131	#include "MCalibrationBlindCamThreeNewStyle.h"
132	#include "MCalibrationChargeCalc.h"
133	#include "MCalibColorSet.h"
134	#include "MCalibrationRelTimeCam.h"
135	#include "MCalibrationRelTimeCalc.h"
136
137	#include "MHGausEvents.h"
138	#include "MHCalibrationCam.h"
139	#include "MHCalibrationChargeCam.h"
140	#include "MHCalibrationChargeBlindCam.h"
141	#include "MHCalibrationChargePINDiode.h"
142	#include "MHCalibrationRelTimeCam.h"
143
144	#include "MReadMarsFile.h"
145	#include "MPedCalcPedRun.h"
146	#include "MRawFileRead.h"
147	#include "MGeomApply.h"
148	#include "MTaskEnv.h"
149	#include "MBadPixelsMerge.h"
150	#include "MBadPixelsCam.h"
151	#include "MExtractTime.h"
152	#include "MExtractor.h"
153	#include "MExtractPINDiode.h"
154	#include "MExtractBlindPixel.h"
155	#include "MExtractSlidingWindow.h"
156	#include "MExtractTimeFastSpline.h"
157	#include "MFCosmics.h"
158	#include "MContinue.h"
159	#include "MFillH.h"
160
161	#include "MArrivalTimeCam.h"
162
163	#include "MStatusDisplay.h"
164
165	ClassImp(MJCalibration);
166
167	using namespace std;
168
169	const Int_t MJCalibration::gkIFAEBoxInaugurationRun = 20113;
170	const Int_t MJCalibration::gkSecondBlindPixelInstallation = 31693;
171	const Int_t MJCalibration::gkSpecialPixelsContInstallation = 34057;
172	const Int_t MJCalibration::gkThirdBlindPixelInstallation = 43308;
173
174	const Double_t MJCalibration::fgConvFADC2PheMin = 0.;
175	const Double_t MJCalibration::fgConvFADC2PheMax = 1.5;
176	const Double_t MJCalibration::fgConvFADC2PhotMin = 0.;
177	const Double_t MJCalibration::fgConvFADC2PhotMax = 10.;
178	const Double_t MJCalibration::fgQEMin = 0.;
179	const Double_t MJCalibration::fgQEMax = 0.3;
180	const Double_t MJCalibration::fgArrivalTimeMin = 1.;
181	const Double_t MJCalibration::fgArrivalTimeMax = 10.;
182
183	const Float_t MJCalibration::fgRefConvFADC2PheInner = 0.14;
184	const Float_t MJCalibration::fgRefConvFADC2PheOuter = 0.4;
185	const Float_t MJCalibration::fgRefConvFADC2PhotInner = 0.8;
186	const Float_t MJCalibration::fgRefConvFADC2PhotOuter = 3.8;
187	const Float_t MJCalibration::fgRefQEInner = 0.18;
188	const Float_t MJCalibration::fgRefQEOuter = 0.12;
189	const Float_t MJCalibration::fgRefArrivalTimeInner = 4.5;
190	const Float_t MJCalibration::fgRefArrivalTimeOuter = 5.0;
191	const Float_t MJCalibration::fgRefArrivalTimeRmsInner = 0.5;
192	const Float_t MJCalibration::fgRefArrivalTimeRmsOuter = 0.5;
193	// --------------------------------------------------------------------------
194	//
195	// Default constructor.
196	//
197	// - Sets fRuns to 0, fExtractor to NULL, fTimeExtractor to NULL, fColor to kNONE,
198	// fDisplay to kNormalDisplay, kRelTimes to kFALSE, kataCheck to kFALSE, kDebug to kFALSE,
199	// kIntensity to kFALSE
200	// - SetUseBlindPixel()
201	// - SetUsePINDiode()
202	//
203	MJCalibration::MJCalibration(const char name, const char title)
204	: fRuns(0), fExtractor(NULL), fTimeExtractor(NULL),
205	fColor(MCalibrationCam::kNONE), fDisplayType(kDataCheckDisplay),
206	fGeometry("MGeomCamMagic")
207	{
208
209	fName = name ? name : "MJCalibration";
210	fTitle = title ? title : "Tool to create the calibration constants for one calibration run";
211
212	SetUseBlindPixel();
213	SetUsePINDiode();
214
215	SetRelTimeCalibration( kFALSE );
216	SetDataCheck ( kFALSE );
217	SetDebug ( kFALSE );
218	SetIntensity ( kFALSE );
219
220	SetNoStorage ( kFALSE );
221	SetHistsStorage ( kFALSE );
222	}
223
224	void MJCalibration::DrawTab(MParList &plist, const char cont, const char name, Option_t *opt)
225	{
226	TObject *obj = plist.FindObject(cont);
227	if (!obj)
228	return;
229
230	fDisplay->AddTab(name);
231	obj->DrawClone(opt);
232	}
233
234	// --------------------------------------------------------------------------
235	//
236	// Display the results in MStatusDisplay:
237	//
238	// - Add "Calibration" to the MStatusDisplay title
239	// - Retrieve the MGeomCam from MParList
240	// - Initialize the following MHCamera's:
241	// 1) MCalibrationPix::GetMean()
242	// 2) MCalibrationPix::Sigma()
243	// 3) MCalibrationChargePix::GetRSigma()
244	// 4) MCalibrationChargePix::GetRSigmaPerCharge()
245	// 5) MCalibrationChargePix::GetPheFFactorMethod()
246	// 6) MCalibrationChargePix::GetMeanConvFADC2Phe()
247	// 7) MCalibrationChargePix::GetMeanFFactorFADC2Phot()
248	// 8) MCalibrationQEPix::GetQECascadesFFactor()
249	// 9) MCalibrationQEPix::GetQECascadesBlindPixel()
250	// 10) MCalibrationQEPix::GetQECascadesPINDiode()
251	// 11) MCalibrationQEPix::GetQECascadesCombined()
252	// 12) MCalibrationQEPix::IsAverageQEFFactorAvailable()
253	// 13) MCalibrationQEPix::IsAverageQEBlindPixelAvailable()
254	// 14) MCalibrationQEPix::IsAverageQEPINDiodeAvailable()
255	// 15) MCalibrationQEPix::IsAverageQECombinedAvailable()
256	// 16) MCalibrationChargePix::IsHiGainSaturation()
257	// 17) MCalibrationPix::GetHiLoMeansDivided()
258	// 18) MCalibrationPix::GetHiLoSigmasDivided()
259	// 19) MCalibrationChargePix::GetHiGainPickup()
260	// 20) MCalibrationChargePix::GetLoGainPickup()
261	// 21) MCalibrationChargePix::GetHiGainBlackout()
262	// 22) MCalibrationChargePix::GetLoGainBlackout()
263	// 23) MCalibrationPix::IsExcluded()
264	// 24) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnsuitableRun)
265	// 25) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnreliableRun)
266	// 26) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kHiGainOscillating)
267	// 27) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kLoGainOscillating)
268	// 28) MCalibrationChargePix::GetAbsTimeMean()
269	// 29) MCalibrationChargePix::GetAbsTimeRms()
270	//
271	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
272	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
273	// and otherwise, (default: SetNormalDisplay()), a good selection of plots is given
274	//
275	void MJCalibration::DisplayResult(MParList &plist)
276	{
277	if (!fDisplay)
278	return;
279
280	TString drawoption = "nonew ";
281	if (fDisplayType == kDataCheckDisplay)
282	drawoption += "datacheck";
283	if (fDisplayType == kFullDisplay)
284	drawoption += "all";
285
286	if (IsUsePINDiode())
287	DrawTab(plist, "MHCalibrationChargePINDiode", "PINDiode", drawoption);
288	if (IsUseBlindPixel())
289	DrawTab(plist, "MHCalibrationChargeBlindCam", "BlindPix", drawoption);
290	if (IsRelTimes())
291	DrawTab(plist, "MHCalibrationRelTimeCam", "RelTime", drawoption);
292	DrawTab(plist, "MHCalibrationChargeCam", "Charge", drawoption);
293
294	//
295	// Update display
296	//
297	TString title = fDisplay->GetTitle();
298	title += "-- Calibration ";
299	title += fSequence.IsValid() ? Form("calib%06d", fSequence.GetSequence()) : (const char*)fRuns->GetRunsAsString();
300	title += " --";
301	fDisplay->SetTitle(title);
302
303	//
304	// Get container from list
305	//
306	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
307
308	// Create histograms to display
309	MHCamera disp1 (geomcam, "Charge", "Fitted Mean Signal (Charges)");
310	MHCamera disp2 (geomcam, "SigmaCharge", "Sigma of Fitted Signal");
311	MHCamera disp3 (geomcam, "RSigma", "Reduced Sigmas");
312	MHCamera disp4 (geomcam, "RSigmaPerCharge", "Reduced Sigma per Charge");
313	MHCamera disp5 (geomcam, "NumPhes", "Number Photo-electrons");
314	MHCamera disp6 (geomcam, "ConvFADC2Phes", "Conversion Factor to Phes");
315	MHCamera disp7 (geomcam, "TotalFFactor", "Total F-Factor(F-Factor Method)");
316	MHCamera disp8 (geomcam, "CascadesQEFFactor", "Cascades QE (F-Factor Method)");
317	MHCamera disp9 (geomcam, "CascadesQEBlindPix","Cascades QE (Blind Pixel Method)");
318	MHCamera disp10(geomcam, "CascadesQEPINDiode","Cascades QE (PIN Diode Method)");
319	MHCamera disp11(geomcam, "CascadesQECombined","Cascades QE (Combined Method)");
320	MHCamera disp12(geomcam, "FFactorValid", "Pixels with valid F-Factor calibration");
321	MHCamera disp13(geomcam, "BlindPixelValid", "Pixels with valid BlindPixel calibration");
322	MHCamera disp14(geomcam, "PINdiodeValid", "Pixels with valid PINDiode calibration");
323	MHCamera disp15(geomcam, "CombinedValid", "Pixels with valid Combined calibration");
324	MHCamera disp16(geomcam, "Saturation", "Pixels with saturated Hi Gain");
325	MHCamera disp17(geomcam, "ConversionMeans", "Conversion HiGain.vs.LoGain Means");
326	MHCamera disp18(geomcam, "ConversionSigmas", "Conversion HiGain.vs.LoGain Sigmas");
327	MHCamera disp19(geomcam, "HiGainPickup", "Number Pickup events Hi Gain");
328	MHCamera disp20(geomcam, "LoGainPickup", "Number Pickup events Lo Gain");
329	MHCamera disp21(geomcam, "HiGainBlackout", "Number Blackout events Hi Gain");
330	MHCamera disp22(geomcam, "LoGainBlackout", "Number Blackout events Lo Gain");
331	MHCamera disp23(geomcam, "Excluded", "Pixels previously excluded");
332	MHCamera disp24(geomcam, "UnSuitable", "Pixels not suited for further analysis");
333	MHCamera disp25(geomcam, "UnReliable", "Pixels suitable, but not reliable for further analysis");
334	MHCamera disp26(geomcam, "HiGainOscillating", "Oscillating Pixels High Gain");
335	MHCamera disp27(geomcam, "LoGainOscillating", "Oscillating Pixels Low Gain");
336	MHCamera disp28(geomcam, "AbsTimeMean", "Abs. Arrival Times");
337	MHCamera disp29(geomcam, "AbsTimeRms", "RMS of Arrival Times");
338	MHCamera disp30(geomcam, "MeanTime", "Mean Rel. Arrival Times");
339	MHCamera disp31(geomcam, "SigmaTime", "Sigma Rel. Arrival Times");
340	MHCamera disp32(geomcam, "TimeProb", "Probability of Time Fit");
341	MHCamera disp33(geomcam, "TimeNotFitValid", "Pixels with not valid fit results");
342	MHCamera disp34(geomcam, "TimeOscillating", "Oscillating Pixels");
343	MHCamera disp35(geomcam, "TotalConv", "Conversion Factor to photons");
344	MHCamera disp36(geomcam, "RMSperMean", "Charge histogram RMS per Mean");
345
346	MCalibrationChargeCam *cam = NULL;
347	MCalibrationQECam *qecam = NULL;
348	MCalibrationRelTimeCam *relcam = NULL;
349	MBadPixelsCam *badcam = NULL;
350
351	if (IsIntensity())
352	{
353	cam = (MCalibrationChargeCam*) fIntensCalibCam.GetCam();
354	qecam = (MCalibrationQECam*) fIntensQECam.GetCam();
355	relcam = (MCalibrationRelTimeCam*)fIntensRelTimeCam.GetCam();
356	badcam = (MBadPixelsCam*) fIntensBadCam.GetCam();
357	}
358	else
359	{
360	cam = &fCalibrationCam;
361	qecam = &fQECam;
362	relcam = &fRelTimeCam;
363	badcam = &fBadPixels;
364	}
365
366	// Fitted charge means and sigmas
367	disp1.SetCamContent(*cam, 0);
368	disp1.SetCamError( *cam, 1);
369	disp2.SetCamContent(*cam, 2);
370	disp2.SetCamError( *cam, 3);
371
372	// Reduced Sigmas and reduced sigmas per charge
373	disp3.SetCamContent(*cam, 5);
374	disp3.SetCamError( *cam, 6);
375	disp4.SetCamContent(*cam, 7);
376	disp4.SetCamError( *cam, 8);
377
378	// F-Factor Method
379	disp5.SetCamContent(*cam, 9);
380	disp5.SetCamError( *cam, 10);
381	disp6.SetCamContent(*cam, 11);
382	disp6.SetCamError( *cam, 12);
383	disp7.SetCamContent(*cam, 13);
384	disp7.SetCamError( *cam, 14);
385
386	// Quantum Efficiencies
387	disp8.SetCamContent (*qecam, 0 );
388	disp8.SetCamError (*qecam, 1 );
389	disp9.SetCamContent (*qecam, 2 );
390	disp9.SetCamError (*qecam, 3 );
391	disp10.SetCamContent(*qecam, 4 );
392	disp10.SetCamError (*qecam, 5 );
393	disp11.SetCamContent(*qecam, 6 );
394	disp11.SetCamError (*qecam, 7 );
395
396	// Valid flags
397	disp12.SetCamContent(*qecam, 8 );
398	disp13.SetCamContent(*qecam, 9 );
399	disp14.SetCamContent(*qecam, 10);
400	disp15.SetCamContent(*qecam, 11);
401
402	// Conversion Hi-Lo
403	disp16.SetCamContent(*cam, 25);
404	disp17.SetCamContent(*cam, 16);
405	disp17.SetCamError (*cam, 17);
406	disp18.SetCamContent(*cam, 18);
407	disp18.SetCamError (*cam, 19);
408
409	// Pickup and Blackout
410	disp19.SetCamContent(*cam, 21);
411	disp20.SetCamContent(*cam, 22);
412	disp21.SetCamContent(*cam, 23);
413	disp22.SetCamContent(*cam, 24);
414
415	// Pixels with defects
416	disp23.SetCamContent(*cam, 20);
417	disp24.SetCamContent(*badcam, 6);
418	disp25.SetCamContent(*badcam, 7);
419
420	// Oscillations
421	disp26.SetCamContent(*badcam, 10);
422	disp27.SetCamContent(*badcam, 11);
423
424	// Arrival Times
425	disp28.SetCamContent(*cam, 26);
426	disp28.SetCamError( *cam, 27);
427	disp29.SetCamContent(*cam, 27);
428
429	// RMS and Mean
430	disp36.SetCamContent(*cam,32);
431
432	disp1.SetYTitle("Q [FADC counts]");
433	disp2.SetYTitle("\\sigma_{Q} [FADC counts]");
434
435	disp3.SetYTitle("\\sqrt{\\sigma^{2}_{Q} - RMS^{2}_{Ped}} [FADC Counts]");
436	disp4.SetYTitle("Red.Sigma/<Q> [1]");
437
438	disp5.SetYTitle("Photo-electons [1]");
439	disp6.SetYTitle("Conv.Factor [PhE/FADC counts]");
440	disp7.SetYTitle("Total F-Factor [1]");
441
442	disp8.SetYTitle("QE [1]");
443	disp9.SetYTitle("QE [1]");
444	disp10.SetYTitle("QE [1]");
445	disp11.SetYTitle("QE [1]");
446
447	disp12.SetYTitle("[1]");
448	disp13.SetYTitle("[1]");
449	disp14.SetYTitle("[1]");
450	disp15.SetYTitle("[1]");
451	disp16.SetYTitle("[1]");
452
453	disp17.SetYTitle("<Q>(High)/<Q>(Low) [1]");
454	disp18.SetYTitle("\\sigma_{Q}(High)/\\sigma_{Q}(Low) [1]");
455
456	disp19.SetYTitle("[1]");
457	disp20.SetYTitle("[1]");
458	disp21.SetYTitle("[1]");
459	disp22.SetYTitle("[1]");
460	// disp23.SetYTitle("[1]");
461	// disp24.SetYTitle("[1]");
462	// disp25.SetYTitle("[1]");
463	disp26.SetYTitle("[1]");
464	disp27.SetYTitle("[1]");
465
466	disp28.SetYTitle("Mean Abs. Time [FADC slice]");
467	disp29.SetYTitle("RMS Abs. Time [FADC slices]");
468
469	disp35.SetYTitle("Conv.Factor [Ph/FADC counts]");
470
471	disp36.SetYTitle("Charge RMS/<Q> [1]");
472
473	for (UInt_t i=0;i<geomcam.GetNumPixels();i++)
474	{
475
476	MCalibrationChargePix &pix = (MCalibrationChargePix&)(*cam) [i];
477	MCalibrationQEPix &qe = (MCalibrationQEPix&) (*qecam)[i];
478
479	if (!pix.IsFFactorMethodValid())
480	continue;
481
482	const Float_t convphe = pix.GetMeanConvFADC2Phe();
483	const Float_t quaeff = qe.GetQECascadesFFactor(0.);
484
485	disp35.Fill(i,convphe/quaeff);
486	disp35.SetUsed(i);
487	}
488
489
490	if (IsRelTimes())
491	{
492	disp30.SetCamContent(*relcam,0);
493	disp30.SetCamError( *relcam,1);
494	disp31.SetCamContent(*relcam,2);
495	disp31.SetCamError( *relcam,3);
496	disp32.SetCamContent(*relcam,4);
497	disp33.SetCamContent(fBadPixels,20);
498	disp34.SetCamContent(fBadPixels,21);
499
500	disp30.SetYTitle("Time Offset [FADC units]");
501	disp31.SetYTitle("Timing resolution [FADC units]");
502	disp32.SetYTitle("P_{Time} [1]");
503	disp33.SetYTitle("[1]");
504	disp34.SetYTitle("[1]");
505	}
506
507	if (fDisplayType == kDataCheckDisplay)
508	{
509
510	TCanvas &c1 = fDisplay->AddTab("FitCharge");
511	c1.Divide(3, 3);
512
513	//
514	// MEAN CHARGES
515	//
516
517	c1.cd(1);
518	gPad->SetBorderMode(0);
519	gPad->SetTicks();
520	MHCamera obj1=(MHCamera)disp1.DrawCopy("hist");
521	//
522	// for the datacheck, fix the ranges!!
523	//
524	// obj1->SetMinimum(fgChargeMin);
525	// obj1->SetMaximum(fgChargeMax);
526	//
527	// Set the datacheck sizes:
528	//
529	FixDataCheckHist((TH1D*)obj1);
530	obj1->SetStats(kFALSE);
531	//
532	// set reference lines
533	//
534	// DisplayReferenceLines(obj1,0);
535
536	c1.cd(4);
537	gPad->SetBorderMode(0);
538	obj1->SetPrettyPalette();
539	obj1->Draw();
540
541	c1.cd(7);
542	gPad->SetBorderMode(0);
543	gPad->SetTicks();
544	TH1D obj2 = (TH1D)obj1->Projection(obj1->GetName());
545	obj2->Draw();
546	obj2->SetBit(kCanDelete);
547	obj2->Fit("gaus","Q");
548	TF1 *fun2 = obj2->GetFunction("gaus");
549	fun2->SetLineColor(kYellow);
550	gPad->Modified();
551	gPad->Update();
552	TPaveStats st = (TPaveStats)obj2->GetListOfFunctions()->FindObject("stats");
553	st->SetY1NDC(0.55);
554	st->SetY2NDC(0.89);
555	st->SetX1NDC(0.65);
556	st->SetX2NDC(0.99);
557	gPad->Modified();
558	gPad->Update();
559	//
560	// Set the datacheck sizes:
561	//
562	FixDataCheckHist(obj2);
563	obj2->SetStats(1);
564
565	//
566	// Display the outliers as dead and noisy pixels
567	//
568	DisplayOutliers(obj2,"low-ampl.","high-ampl.");
569	TLatex flattex;
570	flattex.SetTextSize(0.07);
571	const Double_t minl = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
572	const Double_t maxl = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
573	flattex.DrawLatex(minl+0.015*(maxl-minl),obj2->GetBinContent(obj2->GetMaximumBin())/1.35,
574	Form("Flatfield precision: %4.2f%%",
575	fun2->GetParameter(2)/fun2->GetParameter(1)*100.));
576
577	//
578	// RMS per Charge
579	//
580
581	c1.cd(2);
582	gPad->SetBorderMode(0);
583	gPad->SetTicks();
584	MHCamera obj3=(MHCamera)disp36.DrawCopy("hist");
585	//
586	// for the datacheck, fix the ranges!!
587	//
588	// obj3->SetMinimum(0.);
589	// obj3->SetMaximum(fgChargeMax);
590	//
591	// Set the datacheck sizes:
592	//
593	FixDataCheckHist((TH1D*)obj3);
594	obj3->SetStats(kFALSE);
595	//
596	// set reference lines
597	//
598	// DisplayReferenceLines(obj3,0);
599
600	c1.cd(5);
601	gPad->SetBorderMode(0);
602	obj3->SetPrettyPalette();
603	obj3->Draw();
604
605	c1.cd(8);
606	gPad->SetBorderMode(0);
607	if (geomcam.InheritsFrom("MGeomCamMagic"))
608	DisplayDoubleProject(&disp36, "dead", "noisy");
609
610	//
611	// PHOTO ELECTRONS
612	//
613
614	c1.cd(3);
615	gPad->SetBorderMode(0);
616	gPad->SetTicks();
617	MHCamera obj4=(MHCamera)disp5.DrawCopy("hist");
618	//
619	// for the datacheck, fix the ranges!!
620	//
621	// obj3->SetMinimum(fgChargeMin);
622	// obj3->SetMaximum(fgChargeMax);
623	//
624	// Set the datacheck sizes:
625	//
626	FixDataCheckHist((TH1D*)obj4);
627	obj4->SetStats(kFALSE);
628	//
629	// set reference lines
630	//
631	// DisplayReferenceLines(obj3,0);
632
633	c1.cd(6);
634	gPad->SetBorderMode(0);
635	obj4->SetPrettyPalette();
636	obj4->Draw();
637
638	c1.cd(9);
639	gPad->SetBorderMode(0);
640	if (geomcam.InheritsFrom("MGeomCamMagic"))
641	DisplayDoubleProject(&disp5, "dead", "noisy");
642
643	//
644	// CONVERSION FACTORS
645	//
646	TCanvas &c2 = fDisplay->AddTab("Conversion");
647	c2.Divide(3,3);
648
649	c2.cd(1);
650	gPad->SetBorderMode(0);
651	gPad->SetTicks();
652	MHCamera obj5=(MHCamera)disp6.DrawCopy("hist");
653	//
654	// for the datacheck, fix the ranges!!
655	//
656	obj5->SetMinimum(fgConvFADC2PheMin);
657	obj5->SetMaximum(fgConvFADC2PheMax);
658	//
659	// Set the datacheck sizes:
660	//
661	FixDataCheckHist((TH1D*)obj5);
662	obj5->SetStats(kFALSE);
663	//
664	// set reference lines
665	//
666	DisplayReferenceLines(obj5,2);
667
668	c2.cd(4);
669	gPad->SetBorderMode(0);
670	obj5->SetPrettyPalette();
671	obj5->Draw();
672
673	c2.cd(7);
674	gPad->SetBorderMode(0);
675	if (geomcam.InheritsFrom("MGeomCamMagic"))
676	DisplayDoubleProject(&disp6, "noisy", "dead");
677
678	//
679	// QUANTUM EFFICIENCY
680	//
681	c2.cd(2);
682	gPad->SetBorderMode(0);
683	gPad->SetTicks();
684	MHCamera obj6=(MHCamera)disp8.DrawCopy("hist");
685	//
686	// for the datacheck, fix the ranges!!
687	//
688	obj6->SetMinimum(fgQEMin);
689	obj6->SetMaximum(fgQEMax);
690	//
691	// Set the datacheck sizes:
692	//
693	FixDataCheckHist((TH1D*)obj6);
694	obj6->SetStats(kFALSE);
695	//
696	// set reference lines
697	//
698	DisplayReferenceLines(obj6,0);
699
700	c2.cd(5);
701	gPad->SetBorderMode(0);
702	obj6->SetPrettyPalette();
703	obj6->Draw();
704
705	c2.cd(8);
706	gPad->SetBorderMode(0);
707	if (geomcam.InheritsFrom("MGeomCamMagic"))
708	DisplayDoubleProject(&disp8, "noisy", "dead");
709
710	//
711	// CONVERSION FADC TO PHOTONS
712	//
713
714	c2.cd(3);
715	gPad->SetBorderMode(0);
716	gPad->SetTicks();
717	MHCamera obj7=(MHCamera)disp35.DrawCopy("hist");
718	//
719	// for the datacheck, fix the ranges!!
720	//
721	obj7->SetMinimum(fgConvFADC2PhotMin);
722	obj7->SetMaximum(fgConvFADC2PhotMax);
723	//
724	// Set the datacheck sizes:
725	//
726	FixDataCheckHist((TH1D*)obj7);
727	obj7->SetStats(kFALSE);
728	//
729	// set reference lines
730	//
731	DisplayReferenceLines(obj7,1);
732
733	c2.cd(6);
734	gPad->SetBorderMode(0);
735	obj7->SetPrettyPalette();
736	obj7->Draw();
737	c2.cd(9);
738	gPad->SetBorderMode(0);
739	if (geomcam.InheritsFrom("MGeomCamMagic"))
740	DisplayDoubleProject(&disp35, "noisy", "dead");
741
742	//
743	// ARRIVAL TIMES
744	//
745	TCanvas &c3 = fDisplay->AddTab("AbsTimes");
746	c3.Divide(2,3);
747
748	c3.cd(1);
749	gPad->SetBorderMode(0);
750	gPad->SetTicks();
751	MHCamera obj10=(MHCamera)disp28.DrawCopy("hist");
752	//
753	// for the datacheck, fix the ranges!!
754	//
755	obj10->SetMinimum(fgArrivalTimeMin);
756	obj10->SetMaximum(fgArrivalTimeMax);
757	//
758	// Set the datacheck sizes:
759	//
760	FixDataCheckHist((TH1D*)obj10);
761	obj10->SetStats(kFALSE);
762	//
763	// set reference lines
764	//
765	DisplayReferenceLines(obj10,3);
766
767	c3.cd(3);
768	gPad->SetBorderMode(0);
769	obj10->SetPrettyPalette();
770	obj10->Draw();
771
772	c3.cd(5);
773	gPad->SetBorderMode(0);
774	if (geomcam.InheritsFrom("MGeomCamMagic"))
775	DisplayDoubleProject(&disp28, "early", "late");
776
777	//
778	// ARRIVAL TIMES JITTER
779	//
780	c3.cd(2);
781	gPad->SetBorderMode(0);
782	gPad->SetTicks();
783	MHCamera obj11=(MHCamera)disp29.DrawCopy("hist");
784	//
785	// for the datacheck, fix the ranges!!
786	//
787	// obj11->SetMinimum(fgArrivalTimeMin);
788	// obj11->SetMaximum(fgArrivalTimeMax);
789	//
790	// Set the datacheck sizes:
791	//
792	FixDataCheckHist((TH1D*)obj11);
793	obj11->SetStats(kFALSE);
794	//
795	// set reference lines
796	//
797	DisplayReferenceLines(obj11,4);
798
799	c3.cd(4);
800	gPad->SetBorderMode(0);
801	obj11->SetPrettyPalette();
802	obj11->Draw();
803
804	c3.cd(6);
805	gPad->SetBorderMode(0);
806	if (geomcam.InheritsFrom("MGeomCamMagic"))
807	DisplayDoubleProject(&disp29, "", "jittering");
808
809	//
810	// UNSUITABLE PIXELS
811	//
812	TCanvas &c4 = fDisplay->AddTab("Defect");
813	c4.Divide(2,2);
814
815	c4.cd(1);
816	gPad->SetBorderMode(0);
817	gPad->SetTicks();
818	MHCamera obj8=(MHCamera)disp24.DrawCopy("hist");
819	//
820	// for the datacheck, fix the ranges!!
821	//
822	const Double_t max = 11.;
823	obj8->SetMinimum(0.);
824	obj8->SetMaximum(11.);
825	//
826	// Set the datacheck sizes:
827	//
828	FixDataCheckHist((TH1D*)obj8);
829	obj8->SetStats(kFALSE);
830
831	gStyle->SetPalette(1);
832	const Int_t numcol = gStyle->GetNumberOfColors()-3;
833
834	TPaveText *pave = new TPaveText(0.0,0.0,0.99,0.99);
835	pave->SetBit(kCanDelete);
836	pave->ConvertNDCtoPad();
837	pave->SetTextSize(0.05);
838	pave->AddText(" ");
839	TText *t1 = pave->AddText(Form("Signal smaller 3 Pedestal RMS: %3i pixels",
840	CountBadPixels(&disp24,1)));
841	t1->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol + 1.)));
842	t1->SetTextAlign(12);
843	TText *t2 = pave->AddText(Form("%s%3i%s","Signal Rel. error too large: ",
844	CountBadPixels(&disp24,2)," pixels"));
845	t2->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol + 1.)));
846	t2->SetTextAlign(12);
847	TText *t4 = pave->AddText(Form("Low Gain Saturation: %3i pixels",
848	CountBadPixels(&disp24,3)));
849	t4->SetTextColor(gStyle->GetColorPalette(Int_t(3./max*numcol + 1.)));
850	t4->SetTextAlign(12);
851	TText *t5 = pave->AddText(Form("Mean Arr. Time In First Extraction Bin: %3i pixels",
852	CountBadPixels(&disp24,4)));
853	t5->SetTextColor(gStyle->GetColorPalette(Int_t(4./max*numcol + 1.)));
854	t5->SetTextAlign(12);
855	TText *t6 = pave->AddText(Form("Mean Arr. Time In Last 2 Extraction Bins: %3i pixels",
856	CountBadPixels(&disp24,5)));
857	t6->SetTextColor(gStyle->GetColorPalette(Int_t(5./max*numcol + 1.)));
858	t6->SetTextAlign(12);
859	TText *t7 = pave->AddText(Form("Deviating Number of Photo-electrons: %3i pixels",
860	CountBadPixels(&disp24,6)));
861	t7->SetTextColor(gStyle->GetColorPalette(Int_t(6./max*numcol + 1.)));
862	t7->SetTextAlign(12);
863	TText *t9 = pave->AddText(Form("Deviating Number of Photons: %3i pixels",
864	CountBadPixels(&disp24,7)));
865	t9->SetTextColor(gStyle->GetColorPalette(Int_t(7./max*numcol + 1.)));
866	t9->SetTextAlign(12);
867	TText *t10= pave->AddText(Form("High-Gain Histogram Overflow: %3i pixels",
868	CountBadPixels(&disp24,8 )));
869	t10->SetTextColor(gStyle->GetColorPalette(Int_t(8./max*numcol + 1.)));
870	t10->SetTextAlign(12);
871	TText *t11= pave->AddText(Form("Low-Gain Histogram Overflow: %3i pixels",
872	CountBadPixels(&disp24,9 )));
873	t11->SetTextColor(gStyle->GetColorPalette(Int_t(9./max*numcol + 1.)));
874	t11->SetTextAlign(12);
875	TText *t12= pave->AddText(Form("Previously Excluded: %3i pixels",
876	CountBadPixels(&disp24,10)));
877	t12->SetTextColor(gStyle->GetColorPalette(Int_t(10./max*numcol + 1.)));
878	t12->SetTextAlign(12);
879	pave->Draw();
880
881	c4.cd(3);
882	gPad->SetBorderMode(0);
883	obj8->Draw();
884	obj8->SetPrettyPalette();
885
886	//
887	// UNRELIABLE PIXELS
888	//
889
890	c4.cd(2);
891	gPad->SetBorderMode(0);
892	gPad->SetTicks();
893	MHCamera obj9=(MHCamera)disp25.DrawCopy("hist");
894	//
895	// for the datacheck, fix the ranges!!
896	//
897	const Double_t max2 = 8.;
898	obj9->SetMinimum(0.);
899	obj9->SetMaximum(max2);
900	//
901	// Set the datacheck sizes:
902	//
903	FixDataCheckHist((TH1D*)obj9);
904	obj9->SetStats(kFALSE);
905
906	gStyle->SetPalette(1);
907
908	TPaveText *pave2 = new TPaveText(0.0,0.0,0.99,0.99);
909	pave2->SetBit(kCanDelete);
910	pave2->ConvertNDCtoPad();
911	pave2->SetTextSize(0.05);
912	pave2->AddText(" ");
913	TText *t3 = pave2->AddText(Form("Signal Sigma smaller Pedestal RMS: %3i pixels",
914	CountBadPixels(&disp25,1)));
915	t3->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol + 1.)));
916	t3->SetTextAlign(12);
917	TText *tt1 = pave2->AddText(Form("High Gain Signals could not be fitted: %3i pixels",
918	CountBadPixels(&disp25,2)));
919	tt1->SetTextColor(gStyle->GetColorPalette(Int_t(2./max2*numcol + 1.)));
920	tt1->SetTextAlign(12);
921	TText *tt2 = pave2->AddText(Form("Low Gain Signals could not be fitted: %3i pixels",
922	CountBadPixels(&disp25,3)));
923	tt2->SetTextColor(gStyle->GetColorPalette(Int_t(3./max2*numcol + 1.)));
924	tt2->SetTextAlign(12);
925	TText *tt3 = pave2->AddText(Form("Relative Arr. Times could not be fitted: %3i pixels",
926	CountBadPixels(&disp25,4)));
927	tt3->SetTextColor(gStyle->GetColorPalette(Int_t(4./max2*numcol + 1.)));
928	tt3->SetTextAlign(12);
929	TText *tt4 = pave2->AddText(Form("High Gain Signals Oscillation: %3i pixels",
930	CountBadPixels(&disp25,5)));
931	tt4->SetTextColor(gStyle->GetColorPalette(Int_t(5./max2*numcol + 1.)));
932	tt4->SetTextAlign(12);
933	TText *tt5 = pave2->AddText(Form("Low Gain Signals Oscillation: %3i pixels",
934	CountBadPixels(&disp25,6)));
935	tt5->SetTextColor(gStyle->GetColorPalette(Int_t(6./max2*numcol + 1.)));
936	tt5->SetTextAlign(12);
937	TText *tt6 = pave2->AddText(Form("Relative Arr. Times Oscillation: %3i pixels",
938	CountBadPixels(&disp25,7)));
939	tt6->SetTextColor(gStyle->GetColorPalette(Int_t(7./max2*numcol + 1.)));
940	tt6->SetTextAlign(12);
941	TText *tt8 = pave2->AddText(Form("Deviating global F-Factor: %3i pixels",
942	CountBadPixels(&disp25,8)));
943	tt8->SetTextColor(gStyle->GetColorPalette(Int_t(8./max2*numcol + 1.)));
944	tt8->SetTextAlign(12);
945	pave2->Draw();
946
947	c4.cd(4);
948	gPad->SetBorderMode(0);
949	obj9->SetPrettyPalette();
950	obj9->Draw();
951
952	if (IsRelTimes())
953	{
954	TCanvas &c5 = fDisplay->AddTab("RelTimes");
955	c5.Divide(2,3);
956
957	//
958	// MEAN REL. ARR. TIMES
959	//
960	c5.cd(1);
961	gPad->SetBorderMode(0);
962	gPad->SetTicks();
963	MHCamera obj10=(MHCamera)disp30.DrawCopy("hist");
964	//
965	// for the datacheck, fix the ranges!!
966	//
967	// obj10->SetMinimum(fgConvFADC2PheMin);
968	// obj10->SetMaximum(fgConvFADC2PheMax);
969	//
970	// Set the datacheck sizes:
971	//
972	FixDataCheckHist((TH1D*)obj10);
973	obj10->SetStats(kFALSE);
974	//
975	// set reference lines
976	//
977	// DisplayReferenceLines(obj10,2);
978
979	c5.cd(3);
980	gPad->SetBorderMode(0);
981	obj10->SetPrettyPalette();
982	obj10->Draw();
983
984	c5.cd(5);
985	gPad->SetBorderMode(0);
986	if (geomcam.InheritsFrom("MGeomCamMagic"))
987	DisplayDoubleProject(&disp30, "early", "late");
988
989	//
990	// JITTER Rel. Arr. Times
991	//
992	c5.cd(2);
993	gPad->SetBorderMode(0);
994	gPad->SetTicks();
995	MHCamera obj11=(MHCamera)disp31.DrawCopy("hist");
996	//
997	// for the datacheck, fix the ranges!!
998	//
999	// obj11->SetMinimum(fgQEMin);
1000	// obj11->SetMaximum(fgQEMax);
1001	//
1002	// Set the datacheck sizes:
1003	//
1004	FixDataCheckHist((TH1D*)obj11);
1005	obj11->SetStats(kFALSE);
1006	//
1007	// set reference lines
1008	//
1009	// DisplayReferenceLines(obj11,0);
1010
1011	c5.cd(4);
1012	gPad->SetBorderMode(0);
1013	obj11->SetPrettyPalette();
1014	obj11->Draw();
1015
1016	c5.cd(6);
1017	gPad->SetBorderMode(0);
1018	if (geomcam.InheritsFrom("MGeomCamMagic"))
1019	DisplayDoubleProject(&disp31, "too stable", "jittering");
1020
1021	}
1022	return;
1023	}
1024
1025	if (fDisplayType == kNormalDisplay)
1026	{
1027
1028	// Charges
1029	TCanvas &c11 = fDisplay->AddTab("FitCharge");
1030	c11.Divide(2, 4);
1031
1032	disp1.CamDraw(c11, 1, 2, 5, 1);
1033	disp2.CamDraw(c11, 2, 2, 5, 1);
1034
1035	// Reduced Sigmas
1036	TCanvas &c12 = fDisplay->AddTab("RedSigma");
1037	c12.Divide(2,4);
1038
1039	disp3.CamDraw(c12, 1, 2, 5, 1);
1040	disp4.CamDraw(c12, 2, 2, 5, 1);
1041
1042	// F-Factor
1043	TCanvas &c13 = fDisplay->AddTab("Phe's");
1044	c13.Divide(3,4);
1045
1046	disp5.CamDraw(c13, 1, 3, 5, 1);
1047	disp6.CamDraw(c13, 2, 3, 5, 1);
1048	disp7.CamDraw(c13, 3, 3, 5, 1);
1049
1050	// QE's
1051	TCanvas &c14 = fDisplay->AddTab("QE's");
1052	c14.Divide(4,4);
1053
1054	disp8.CamDraw(c14, 1, 4, 5, 1);
1055	disp9.CamDraw(c14, 2, 4, 5, 1);
1056	disp10.CamDraw(c14, 3, 4, 5, 1);
1057	disp11.CamDraw(c14, 4, 4, 5, 1);
1058
1059	// Defects
1060	TCanvas &c15 = fDisplay->AddTab("Defect");
1061	// c15.Divide(5,2);
1062	c15.Divide(4,2);
1063
1064	/*
1065	disp23.CamDraw(c15, 1, 5, 0);
1066	disp24.CamDraw(c15, 2, 5, 0);
1067	disp25.CamDraw(c15, 3, 5, 0);
1068	disp26.CamDraw(c15, 4, 5, 0);
1069	disp27.CamDraw(c15, 5, 5, 0);
1070	*/
1071	disp24.CamDraw(c15, 1, 4, 0);
1072	disp25.CamDraw(c15, 2, 4, 0);
1073	disp26.CamDraw(c15, 3, 4, 0);
1074	disp27.CamDraw(c15, 4, 4, 0);
1075
1076	// Abs. Times
1077	TCanvas &c16 = fDisplay->AddTab("AbsTimes");
1078	c16.Divide(2,3);
1079
1080	disp28.CamDraw(c16, 1, 2, 5);
1081	disp29.CamDraw(c16, 2, 2, 5);
1082
1083	if (IsRelTimes())
1084	{
1085	// Rel. Times
1086	TCanvas &c17 = fDisplay->AddTab("RelTimes");
1087	c17.Divide(2,4);
1088
1089	disp30.CamDraw(c17, 1, 2, 5, 1);
1090	disp31.CamDraw(c17, 2, 2, 5, 1);
1091	}
1092
1093	return;
1094	}
1095
1096	if (fDisplayType == kFullDisplay)
1097	{
1098	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationChargeCam");
1099
1100	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1101	{
1102	cam->GetAverageHiGainSector(sector).DrawClone("all");
1103	cam->GetAverageLoGainSector(sector).DrawClone("all");
1104	}
1105
1106	// Charges
1107	TCanvas &c21 = fDisplay->AddTab("FitCharge");
1108	c21.Divide(2, 4);
1109
1110	disp1.CamDraw(c21, 1, 2, 2, 1);
1111	disp2.CamDraw(c21, 2, 2, 2, 1);
1112
1113	// Reduced Sigmas
1114	TCanvas &c23 = fDisplay->AddTab("RedSigma");
1115	c23.Divide(2,4);
1116
1117	disp3.CamDraw(c23, 1, 2, 2, 1);
1118	disp4.CamDraw(c23, 2, 2, 2, 1);
1119
1120	// F-Factor
1121	TCanvas &c24 = fDisplay->AddTab("Phe's");
1122	c24.Divide(3,5);
1123
1124	disp5.CamDraw(c24, 1, 3, 2, 1, 1);
1125	disp6.CamDraw(c24, 2, 3, 2, 1, 1);
1126	disp7.CamDraw(c24, 3, 3, 2, 1, 1);
1127
1128	// QE's
1129	TCanvas &c25 = fDisplay->AddTab("QE's");
1130	c25.Divide(4,5);
1131
1132	disp8.CamDraw(c25, 1, 4, 2, 1, 1);
1133	disp9.CamDraw(c25, 2, 4, 2, 1, 1);
1134	disp10.CamDraw(c25, 3, 4, 2, 1, 1);
1135	disp11.CamDraw(c25, 4, 4, 2, 1, 1);
1136
1137	// Validity
1138	TCanvas &c26 = fDisplay->AddTab("Valid");
1139	c26.Divide(4,2);
1140
1141	disp12.CamDraw(c26, 1, 4, 0);
1142	disp13.CamDraw(c26, 2, 4, 0);
1143	disp14.CamDraw(c26, 3, 4, 0);
1144	disp15.CamDraw(c26, 4, 4, 0);
1145
1146	// Other info
1147	TCanvas &c27 = fDisplay->AddTab("HiLoGain");
1148	c27.Divide(3,3);
1149
1150	disp16.CamDraw(c27, 1, 3, 0);
1151	disp17.CamDraw(c27, 2, 3, 1);
1152	disp18.CamDraw(c27, 3, 3, 1);
1153
1154	// Pickup
1155	TCanvas &c28 = fDisplay->AddTab("Pickup");
1156	c28.Divide(4,2);
1157
1158	disp19.CamDraw(c28, 1, 4, 0);
1159	disp20.CamDraw(c28, 2, 4, 0);
1160	disp21.CamDraw(c28, 3, 4, 0);
1161	disp22.CamDraw(c28, 4, 4, 0);
1162
1163	// Defects
1164	TCanvas &c29 = fDisplay->AddTab("Defect");
1165	// c29.Divide(5,2);
1166	c29.Divide(4,2);
1167
1168	disp24.CamDraw(c29, 1, 4, 0);
1169	disp25.CamDraw(c29, 2, 4, 0);
1170	disp26.CamDraw(c29, 3, 4, 0);
1171	disp27.CamDraw(c29, 4, 4, 0);
1172
1173	// Abs. Times
1174	TCanvas &c30 = fDisplay->AddTab("AbsTimes");
1175	c30.Divide(2,3);
1176
1177	disp28.CamDraw(c30, 1, 2, 2);
1178	disp29.CamDraw(c30, 2, 2, 1);
1179
1180	if (IsRelTimes())
1181	{
1182	// Rel. Times
1183	TCanvas &c31 = fDisplay->AddTab("RelTimes");
1184	c31.Divide(3,5);
1185
1186	disp30.CamDraw(c31, 1, 3, 2, 1, 1);
1187	disp31.CamDraw(c31, 2, 3, 2, 1, 1);
1188	disp32.CamDraw(c31, 3, 3, 4, 1, 1);
1189
1190	// Time Defects
1191	TCanvas &c32 = fDisplay->AddTab("DefTime");
1192	c32.Divide(2,2);
1193
1194	disp33.CamDraw(c32, 1, 2, 0);
1195	disp34.CamDraw(c32, 2, 2, 0);
1196
1197	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationRelTimeCam");
1198
1199	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1200	{
1201	cam->GetAverageHiGainSector(sector).DrawClone("fourierevents");
1202	cam->GetAverageLoGainSector(sector).DrawClone("fourierevents");
1203	}
1204
1205	}
1206
1207	return;
1208	}
1209	}
1210
1211
1212	void MJCalibration::DisplayReferenceLines(MHCamera *cam, const Int_t what) const
1213	{
1214
1215	const MGeomCam *geom = cam->GetGeometry();
1216
1217	Double_t x = geom->InheritsFrom("MGeomCamMagic") ? 397 : cam->GetNbinsX() ;
1218
1219	TLine line;
1220	line.SetLineStyle(kDashed);
1221	line.SetLineWidth(3);
1222	line.SetLineColor(kBlue);
1223
1224	TLine *l1 = NULL;
1225
1226	if (what == 0)
1227	l1 = line.DrawLine(0, fgRefQEInner, x, fgRefQEInner);
1228	else if (what == 1)
1229	l1 = line.DrawLine(0, fgRefConvFADC2PhotInner, x, fgRefConvFADC2PhotInner);
1230	else if (what == 2)
1231	l1 = line.DrawLine(0, fgRefConvFADC2PheInner, x, fgRefConvFADC2PheInner );
1232	else if (what == 3)
1233	l1 = line.DrawLine(0, fgRefArrivalTimeInner, x, fgRefArrivalTimeInner );
1234	else if (what == 4)
1235	l1 = line.DrawLine(0, fgRefArrivalTimeRmsInner, x, fgRefArrivalTimeRmsInner );
1236
1237	if (geom->InheritsFrom("MGeomCamMagic"))
1238	{
1239	const Double_t x2 = cam->GetNbinsX();
1240
1241	switch (what)
1242	{
1243	case 0:
1244	line.DrawLine(x2, fgRefQEOuter, 398, fgRefQEOuter);
1245	break;
1246	case 1:
1247	line.DrawLine(x2, fgRefConvFADC2PhotOuter, 398, fgRefConvFADC2PhotOuter );
1248	break;
1249	case 2:
1250	line.DrawLine(x2, fgRefConvFADC2PheOuter, 398, fgRefConvFADC2PheOuter);
1251	break;
1252	case 3:
1253	line.DrawLine(x2, fgRefArrivalTimeOuter, 398, fgRefArrivalTimeOuter);
1254	break;
1255	case 4:
1256	line.DrawLine(x2, fgRefArrivalTimeRmsOuter, 398, fgRefArrivalTimeRmsOuter);
1257	break;
1258	}
1259	}
1260
1261	TLegend *leg = new TLegend(what ? 0.2 : 0.6,0.75,what ? 0.5 : 0.9 ,0.85);
1262	leg->SetBit(kCanDelete);
1263	leg->AddEntry(l1, "Reference","l");
1264	leg->Draw();
1265	}
1266
1267	void MJCalibration::DisplayOutliers(TH1D hist, const char whatsmall, const char* whatbig) const
1268	{
1269
1270	const Int_t kNotDraw = 1<<9;
1271	TF1 *f = hist->GetFunction("gaus");
1272	f->ResetBit(kNotDraw);
1273
1274	const Float_t mean = f->GetParameter(1);
1275	const Float_t lolim = mean - 4.0*f->GetParameter(2);
1276	const Float_t uplim = mean + 4.0*f->GetParameter(2);
1277	const Stat_t dead = hist->Integral(0,hist->FindBin(lolim)-1);
1278	const Stat_t noisy = hist->Integral(hist->FindBin(uplim)+1,hist->GetNbinsX()+1);
1279
1280	const Double_t max = hist->GetBinContent(hist->GetMaximumBin());
1281
1282	const Double_t minl = hist->GetBinCenter(hist->GetXaxis()->GetFirst());
1283	const Double_t maxl = hist->GetBinCenter(hist->GetXaxis()->GetLast());
1284
1285	TLatex deadtex;
1286	deadtex.SetTextSize(0.07);
1287	deadtex.DrawLatex(minl+0.015*(maxl-minl),max/1.1,
1288	Form("%3i %s pixels",(Int_t)dead,whatsmall));
1289
1290	TLatex noisytex;
1291	noisytex.SetTextSize(0.07);
1292	noisytex.DrawLatex(minl+0.015*(maxl-minl),max/1.2,
1293	Form("%3i %s pixels",(Int_t)noisy,whatbig));
1294
1295	}
1296
1297	void MJCalibration::FixDataCheckHist(TH1D *hist) const
1298	{
1299
1300	hist->SetDirectory(NULL);
1301
1302	//
1303	// set the labels bigger
1304	//
1305	TAxis *xaxe = hist->GetXaxis();
1306	TAxis *yaxe = hist->GetYaxis();
1307
1308	xaxe->CenterTitle();
1309	yaxe->CenterTitle();
1310	xaxe->SetTitleSize(0.06);
1311	yaxe->SetTitleSize(0.06);
1312	xaxe->SetTitleOffset(0.8);
1313	yaxe->SetTitleOffset(0.85);
1314	xaxe->SetLabelSize(0.05);
1315	yaxe->SetLabelSize(0.05);
1316
1317	}
1318
1319	const Int_t MJCalibration::CountBadPixels ( MHCamera *cam , const Int_t what ) const
1320	{
1321
1322	Int_t cnt = 0;
1323
1324	for (UInt_t pix=0; pix<cam->GetNumPixels();pix++)
1325	if ((Int_t)cam->GetPixContent(pix) == what)
1326	cnt++;
1327
1328	return cnt;
1329	}
1330
1331	// --------------------------------------------------------------------------
1332	//
1333	// Retrieve the output file written by WriteResult()
1334	//
1335	const char* MJCalibration::GetOutputFile() const
1336	{
1337	if (fSequence.IsValid())
1338	return Form("%s/calib%06d.root", (const char*)fPathOut, fSequence.GetSequence());
1339	if (!fRuns)
1340	return "";
1341
1342	return Form("%s/%s-F1.root", (const char)fPathOut, (const char)fRuns->GetRunsAsFileName());
1343	}
1344
1345	// --------------------------------------------------------------------------
1346	//
1347	// MJCalibration allows to setup several option by a resource file:
1348	// MJCalibration.Display: full, datacheck, normal
1349	// MJCalibration.RelTimeCalibration: yes,no
1350	// MJCalibration.DataCheck: yes,no
1351	// MJCalibration.Debug: yes,no
1352	// MJCalibration.Intensity: yes,no
1353	// MJCalibration.UseBlindPixel: yes,no
1354	// MJCalibration.UsePINDiode: yes,no
1355	// MJCalibration.Geometry: MGeomCamMagic, MGeomCamECO1000
1356	//
1357	// For more details see the class description and the corresponding Getters
1358	//
1359	Bool_t MJCalibration::CheckEnvLocal()
1360	{
1361	TString dis = GetEnv("Display", "");
1362	if (dis.BeginsWith("Full", TString::kIgnoreCase))
1363	SetFullDisplay();
1364	if (dis.BeginsWith("DataCheck", TString::kIgnoreCase))
1365	SetDataCheckDisplay();
1366	if (dis.BeginsWith("Normal", TString::kIgnoreCase))
1367	SetNormalDisplay();
1368
1369	SetRelTimeCalibration(GetEnv("RelTimeCalibration", IsRelTimes()));
1370	SetIntensity(GetEnv("IntensityCalibration", IsIntensity()));
1371	SetDataCheck(GetEnv("DataCheck", IsDataCheck()));
1372	SetDebug(GetEnv("Debug", IsDebug()));
1373
1374	SetUseBlindPixel(GetEnv("UseBlindPixel", IsUseBlindPixel()));
1375	SetUsePINDiode(GetEnv("UsePINDiode", IsUsePINDiode()));
1376	SetGeometry(GetEnv("Geometry", fGeometry));
1377
1378	return kTRUE;
1379	}
1380
1381	// --------------------------------------------------------------------------
1382	//
1383	// Call the ProcessFile(MPedestalCam)
1384	//
1385	Bool_t MJCalibration::Process(MPedestalCam &pedcam)
1386	{
1387	if (!ReadCalibrationCam())
1388	return ProcessFile(pedcam);
1389
1390	return kTRUE;
1391	}
1392
1393	void MJCalibration::InitBlindPixel(MExtractBlindPixel &blindext,
1394	MHCalibrationChargeBlindCam &blindcam)
1395	{
1396
1397	Int_t run = fSequence.IsValid() ? fSequence.GetLastRun() : fRuns->GetRuns()[fRuns->GetNumRuns()-1];
1398
1399	//
1400	// Initialize the blind pixel. Unfortunately, there is a hardware difference
1401	// in the first blind pixel until run "gkSecondBlindPixelInstallation" and the
1402	// later setup. The first needs to use a filter because of the length of
1403	// spurious NSB photon signals. The latter get better along extracting the amplitude
1404	// from a small window.
1405	//
1406	if (run < gkSecondBlindPixelInstallation)
1407	{
1408	MCalibrationBlindCamOneOldStyle blindresults;
1409	if (IsIntensity())
1410	blindresults.Copy(*fIntensBlindCam.GetCam());
1411	else
1412	blindresults.Copy(fCalibrationBlindCam);
1413
1414	blindext.SetExtractionType(MExtractBlindPixel::kIntegral);
1415	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1416	blindext.SetRange(10,19,0,6);
1417	blindext.SetNSBFilterLimit(70);
1418	}
1419	else if (run < gkThirdBlindPixelInstallation)
1420	{
1421
1422	MCalibrationBlindCamTwoNewStyle blindresults;
1423
1424	if (IsIntensity())
1425	blindresults.Copy(*fIntensBlindCam.GetCam());
1426	else
1427	blindresults.Copy(fCalibrationBlindCam);
1428
1429	blindext.SetNumBlindPixels(blindresults.GetSize());
1430	for (Int_t i=0;i<blindresults.GetSize();i++)
1431	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1432
1433	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1434	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1435	blindext.SetRange(5,8,0,2);
1436	blindext.SetNSBFilterLimit(38);
1437
1438	}
1439	else
1440	{
1441
1442	MCalibrationBlindCamThreeNewStyle blindresults;
1443
1444	if (IsIntensity())
1445	blindresults.Copy(*fIntensBlindCam.GetCam());
1446	else
1447	blindresults.Copy(fCalibrationBlindCam);
1448
1449	blindext.SetNumBlindPixels(blindresults.GetSize());
1450
1451	for (Int_t i=0;i<blindresults.GetSize();i++)
1452	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1453
1454	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1455	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1456	blindext.SetDataType(MExtractBlindPixel::kRawEvt2);
1457	blindext.SetRange(5,8,0,2);
1458	blindext.SetNSBFilterLimit(38);
1459
1460	}
1461
1462	}
1463
1464	// --------------------------------------------------------------------------
1465	//
1466	// Execute the task list and the eventloop:
1467	//
1468	// - Check if there are fRuns, otherwise return
1469	// - Check the colour of the files in fRuns (FindColor()), otherwise return
1470	// - Check for consistency between run numbers and number of files
1471	// - Add fRuns to MReadMarsFile
1472	// - Put into MParList:
1473	// 1) MPedestalCam (pedcam)
1474	// 2) MCalibrationQECam (fQECam)
1475	// 3) MCalibrationChargeCam (fCalibrationCam)
1476	// 4) MCalibrationRelTimeCam (fRelTimeCam) (only if flag IsRelTimes() is chosen)
1477	// 5) MBadPixelsCam (fBadPixels)
1478	// 6) MCalibrationChargePINDiode
1479	// 7) MCalibrationBlindPix
1480	// - Put into the MTaskList:
1481	// 1) MReadMarsFile
1482	// 2) MBadPixelsMerge
1483	// 3) MGeomApply
1484	// 4) MExtractor
1485	// 5) MExtractPINDiode
1486	// 6) MExtractBlindPixel
1487	// 7) MExtractTime (only if flag IsRelTimes() is chosen)
1488	// 8) MContinue(MFCosmics)
1489	// 9) MFillH("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode")
1490	// 10) MFillH("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam")
1491	// 11) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam")
1492	// 12) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillRelTime")
1493	// 13) MCalibrationChargeCalc
1494	// 14) MFillH("MHCalibrationRelTimeCam", "MArrivalTimeCam") (only if flag IsRelTimes() is chosen)
1495	// 15) MCalibrationRelTimeCalc
1496	// - Execute MEvtLoop
1497	// - DisplayResult()
1498	// - WriteResult()
1499	//
1500	Bool_t MJCalibration::ProcessFile(MPedestalCam &pedcam)
1501	{
1502	if (!fSequence.IsValid())
1503	{
1504	if (!fRuns)
1505	{
1506	*fLog << err << "No Runs choosen... abort." << endl;
1507	return kFALSE;
1508	}
1509
1510	if (fRuns->GetNumRuns() != fRuns->GetNumEntries())
1511	{
1512	*fLog << err << "Number of files found doesn't match number of runs... abort."
1513	<< fRuns->GetNumRuns() << " vs. " << fRuns->GetNumEntries() << endl;
1514	return kFALSE;
1515	}
1516	}
1517
1518	//if (!CheckEnv())
1519	// return kFALSE;
1520
1521	CheckEnv();
1522
1523	// --------------------------------------------------------------------------------
1524
1525	*fLog << inf;
1526	fLog->Separator(GetDescriptor());
1527
1528	*fLog << "Calculate MCalibrationCam from ";
1529	if (fSequence.IsValid())
1530	*fLog << "Sequence #" << fSequence.GetSequence() << endl;
1531	else
1532	*fLog << "Runs " << fRuns->GetRunsAsString() << endl;
1533	*fLog << endl;
1534
1535	// --------------------------------------------------------------------------------
1536
1537	// Setup Tasklist
1538	MParList plist;
1539	MTaskList tlist;
1540	plist.AddToList(&tlist);
1541	plist.AddToList(this); // take care of fDisplay!
1542
1543	MDirIter iter;
1544	if (fSequence.IsValid())
1545	{
1546	const Int_t n0 = fSequence.SetupCalRuns(iter, fPathData, "C", IsDataCheck());
1547	const Int_t n1 = fSequence.GetNumCalRuns();
1548	if (n0==0)
1549	{
1550	*fLog << err << "ERROR - No input files of sequence found!" << endl;
1551	return kFALSE;
1552	}
1553	if (n0!=n1)
1554	{
1555	*fLog << err << "ERROR - Number of files found ("
1556	<< n0 << ") doesn't match number of files in sequence ("
1557	<< n1 << ")" << endl;
1558	return kFALSE;
1559	}
1560	}
1561
1562	//
1563	// Input containers
1564	//
1565	plist.AddToList(&pedcam);
1566	plist.AddToList(&fBadPixels);
1567
1568	//
1569	// Calibration Results containers
1570	//
1571	if (IsIntensity())
1572	{
1573	plist.AddToList(&fIntensQECam);
1574	plist.AddToList(&fIntensCalibCam);
1575	plist.AddToList(&fIntensBlindCam);
1576	// plist.AddToList(&fIntensCalibrationPINDiode);
1577	plist.AddToList(&fIntensRelTimeCam);
1578	plist.AddToList(&fIntensBadCam);
1579	}
1580	else
1581	{
1582	plist.AddToList(&fQECam);
1583	plist.AddToList(&fCalibrationCam);
1584	plist.AddToList(&fCalibrationBlindCam);
1585	plist.AddToList(&fCalibrationPINDiode);
1586	plist.AddToList(&fRelTimeCam);
1587	}
1588
1589	//
1590	// Initialize two histogram containers which could be modified in this class
1591	//
1592	MHCalibrationRelTimeCam reltimecam;
1593	MHCalibrationChargeCam chargecam;
1594	MHCalibrationChargeBlindCam blindcam;
1595	plist.AddToList(&chargecam);
1596	plist.AddToList(&blindcam);
1597	if (IsRelTimes())
1598	plist.AddToList(&reltimecam);
1599	//
1600	// Data Reading tasks
1601	//
1602	MReadMarsFile read("Events");
1603	MRawFileRead rawread(NULL);
1604
1605	if (IsDataCheck())
1606	{
1607	rawread.AddFiles(fSequence.IsValid() ? iter : *fRuns);
1608	tlist.AddToList(&rawread);
1609	}
1610	else
1611	{
1612	read.DisableAutoScheme();
1613	read.AddFiles(fSequence.IsValid() ? iter : *fRuns);
1614	tlist.AddToList(&read);
1615	}
1616
1617	//
1618	// Other Tasks
1619	//
1620	MGeomApply apply;
1621	apply.SetGeometry(fGeometry);
1622	MBadPixelsMerge merge(&fBadPixels);
1623	MExtractPINDiode pinext;
1624	MExtractBlindPixel blindext;
1625
1626	InitBlindPixel(blindext, blindcam);
1627
1628	MExtractSlidingWindow extract2;
1629	MExtractTimeFastSpline timespline;
1630	MCalibrationChargeCalc calcalc;
1631	MCalibrationRelTimeCalc timecalc;
1632	calcalc.SetOutputFile("");
1633	timecalc.SetOutputFile("");
1634
1635	if (!fSequence.IsValid())
1636	{
1637	calcalc.SetOutputPath(fPathOut);
1638	calcalc.SetOutputFile(Form("%s-ChargeCalibStat.txt",(const char*)fRuns->GetRunsAsFileName()));
1639	timecalc.SetOutputPath(fPathOut);
1640	timecalc.SetOutputFile(Form("%s-ChargeCalibStat.txt",(const char*)fRuns->GetRunsAsFileName()));
1641	}
1642
1643	if (IsDebug())
1644	{
1645	chargecam.SetDebug();
1646	calcalc.SetDebug();
1647	}
1648
1649	//
1650	// Calibration histogramming
1651	//
1652	MFillH fillpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
1653	MFillH fillbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
1654	MFillH fillcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
1655	MFillH filltme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
1656	fillpin.SetBit(MFillH::kDoNotDisplay);
1657	fillbnd.SetBit(MFillH::kDoNotDisplay);
1658	fillcam.SetBit(MFillH::kDoNotDisplay);
1659	filltme.SetBit(MFillH::kDoNotDisplay);
1660
1661	//
1662	// Set default extractors in case, none has been set...
1663	//
1664	if (!fExtractor)
1665	fExtractor = &extract2;
1666	if (!fTimeExtractor)
1667	fTimeExtractor = &timespline;
1668
1669	//
1670	// Look if the extractor is a pure charge or also a time extractor
1671	//
1672	if (fExtractor->InheritsFrom("MExtractTimeAndCharge"))
1673	{
1674	if (fExtractorCam.GetSize() == pedcam.GetSize())
1675	calcalc.SetPedestals(&fExtractorCam);
1676	else
1677	{
1678	*fLog << err << GetDescriptor() << "ERROR - ";
1679	*fLog << "Used Extractor derives from MExtractTimeAndCharge, " << endl;
1680	*fLog << "but MExtractorCam size " << fExtractorCam.GetSize() << " ";
1681	*fLog << "mismatch pedcam size " << pedcam.GetSize() << "! " << endl;
1682	return kFALSE;
1683	}
1684	}
1685
1686	//
1687	// Switch off noise calculation
1688	//
1689	fExtractor->SetNoiseCalculation(kFALSE);
1690	fTimeExtractor->SetNoiseCalculation(kFALSE);
1691
1692	//
1693	// Setup more tasks and tasklist
1694	//
1695	MTaskEnv taskenv("ExtractSignal");
1696	taskenv.SetDefault(fExtractor);
1697
1698	tlist.AddToList(&merge);
1699	tlist.AddToList(&apply);
1700
1701	MPedCalcPedRun pedcalc;
1702	pedcalc.SetExtractWindow(fExtractor->GetHiGainFirst(),TMath::Nint(fExtractor->GetNumHiGainSamples()));
1703
1704	if (IsIntensity())
1705	tlist.AddToList(&pedcalc);
1706
1707	MCalibColorSet colorset;
1708	tlist.AddToList(&colorset);
1709
1710	tlist.AddToList(&taskenv);
1711	tlist.AddToList(&pinext);
1712	tlist.AddToList(&blindext);
1713
1714	MTaskEnv taskenv2("ExtractTime");
1715	if (!fExtractor->InheritsFrom("MExtractTimeAndCharge"))
1716	{
1717	taskenv2.SetDefault(fTimeExtractor);
1718
1719	if (IsRelTimes())
1720	tlist.AddToList(&taskenv2);
1721	}
1722
1723	//
1724	// Apply a filter against cosmics
1725	// (will have to be needed in the future
1726	// when the calibration hardware-trigger is working)
1727	//
1728	MFCosmics cosmics;
1729	MContinue cont(&cosmics);
1730
1731	if (fColor == MCalibrationCam::kCT1)
1732	tlist.AddToList(&cont);
1733
1734	MCalibColorSteer steer;
1735	if (IsIntensity())
1736	tlist.AddToList(&steer);
1737
1738	tlist.AddToList(&fillcam);
1739
1740	if (IsRelTimes())
1741	{
1742	tlist.AddToList(&filltme);
1743	tlist.AddToList(&timecalc);
1744	}
1745
1746	if (IsUseBlindPixel())
1747	tlist.AddToList(&fillbnd);
1748	if (IsUsePINDiode())
1749	tlist.AddToList(&fillpin);
1750
1751	tlist.AddToList(&calcalc);
1752
1753	// Create and setup the eventloop
1754	MEvtLoop evtloop(fName);
1755	evtloop.SetParList(&plist);
1756	evtloop.SetDisplay(fDisplay);
1757	evtloop.SetLogStream(fLog);
1758	if (!SetupEnv(evtloop))
1759	return kFALSE;
1760
1761	if (!taskenv.GetTask() && !taskenv2.GetTask())
1762	{
1763	*fLog << err << "ERROR - Neither ExtractSignal nor ExtractTime initialized or both '<dummy>'." << endl;
1764	return kFALSE;
1765	}
1766
1767	if (!WriteTasks(taskenv.GetTask(), taskenv2.GetTask()))
1768	return kFALSE;
1769
1770	// Execute first analysis
1771	if (!evtloop.Eventloop())
1772	{
1773	*fLog << err << GetDescriptor() << ": Failed." << endl;
1774	return kFALSE;
1775	}
1776
1777	tlist.PrintStatistics();
1778
1779	if (!fCalibrationPINDiode.IsValid())
1780	SetUsePINDiode(kFALSE);
1781
1782	DisplayResult(plist);
1783
1784	if (!IsNoStorage())
1785	if (!WriteResult(plist.FindObject("MGeomCam")))
1786	return kFALSE;
1787
1788	if (IsHistsStorage())
1789	{
1790	if (!WriteHists(plist))
1791	return kFALSE;
1792	}
1793
1794	*fLog << all << GetDescriptor() << ": Done." << endl;
1795
1796	return kTRUE;
1797	}
1798
1799	// --------------------------------------------------------------------------
1800	//
1801	// Read the following containers from GetOutputFile()
1802	// - MCalibrationChargeCam
1803	// - MCalibrationQECam
1804	// - MBadPixelsCam
1805	//
1806	Bool_t MJCalibration::ReadCalibrationCam()
1807	{
1808
1809	if (IsNoStorage())
1810	return kFALSE;
1811
1812	const TString fname = GetOutputFile();
1813
1814	if (gSystem->AccessPathName(fname, kFileExists))
1815	{
1816	*fLog << err << "Input file " << fname << " doesn't exist." << endl;
1817	return kFALSE;
1818	}
1819
1820	*fLog << inf << "Reading from file: " << fname << endl;
1821
1822	TFile file(fname, "READ");
1823	if (fCalibrationCam.Read()<=0)
1824	{
1825	*fLog << err << "Unable to read MCalibrationChargeCam from " << fname << endl;
1826	return kFALSE;
1827	}
1828
1829	if (fQECam.Read()<=0)
1830	{
1831	*fLog << err << "Unable to read MCalibrationQECam from " << fname << endl;
1832	return kFALSE;
1833	}
1834
1835
1836	if (file.FindKey("MCalibrationRelTimeCam"))
1837	if (fRelTimeCam.Read()<=0)
1838	{
1839	*fLog << err << "Unable to read MCalibrationRelTimeCam from " << fname << endl;
1840	return kFALSE;
1841	}
1842
1843	if (file.FindKey("MBadPixelsCam"))
1844	{
1845	MBadPixelsCam bad;
1846	if (bad.Read()<=0)
1847	{
1848	*fLog << err << "Unable to read MBadPixelsCam from " << fname << endl;
1849	return kFALSE;
1850	}
1851	fBadPixels.Merge(bad);
1852	}
1853
1854	if (fDisplay /&& !fDisplay->GetCanvas("Pedestals")/) // FIXME!
1855	fDisplay->Read();
1856
1857	return kTRUE;
1858	}
1859
1860
1861	// --------------------------------------------------------------------------
1862	//
1863	// Set the useage of the Blind Pixel device
1864	//
1865	void MJCalibration::SetUseBlindPixel(const Bool_t b)
1866	{
1867	b ? SETBIT(fDevices,kUseBlindPixel) : CLRBIT(fDevices,kUseBlindPixel);
1868	}
1869
1870	// --------------------------------------------------------------------------
1871	//
1872	// Set the useage of the PIN Diode device
1873	//
1874	void MJCalibration::SetUsePINDiode(const Bool_t b)
1875	{
1876	b ? SETBIT(fDevices,kUsePINDiode) : CLRBIT(fDevices,kUsePINDiode);
1877	}
1878
1879	Bool_t MJCalibration::WriteEventloop(MEvtLoop &evtloop) const
1880	{
1881
1882	if (IsNoStorage())
1883	return kTRUE;
1884
1885	if (fPathOut.IsNull())
1886	return kTRUE;
1887
1888	const TString oname(GetOutputFile());
1889
1890	*fLog << inf << "Writing to file: " << oname << endl;
1891
1892	TFile file(oname, fOverwrite?"RECREATE":"NEW", "File created by MJCalibration", 9);
1893	if (!file.IsOpen())
1894	{
1895	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
1896	return kFALSE;
1897	}
1898
1899	if (evtloop.Write(fName)<=0)
1900	{
1901	*fLog << err << "Unable to write MEvtloop to " << oname << endl;
1902	return kFALSE;
1903	}
1904
1905	return kTRUE;
1906	}
1907
1908	Bool_t MJCalibration::WriteTasks(MTask t1, MTask t2) const
1909	{
1910
1911	if (IsNoStorage())
1912	return kTRUE;
1913
1914	if (fPathOut.IsNull())
1915	return kTRUE;
1916
1917	const TString oname(GetOutputFile());
1918
1919	*fLog << inf << "Writing to file: " << oname << endl;
1920
1921	TFile file(oname, fOverwrite?"RECREATE":"NEW", "File created by MJCalibration", 9);
1922	if (!file.IsOpen())
1923	{
1924	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
1925	return kFALSE;
1926	}
1927
1928	if (t1 && t1->Write()<=0)
1929	{
1930	*fLog << err << "Unable to write " << t1->GetName() << " to " << oname << endl;
1931	return kFALSE;
1932	}
1933
1934	if (t2 && t2->Write()<=0)
1935	{
1936	*fLog << err << "Unable to write " << t2->GetName() << " to " << oname << endl;
1937	return kFALSE;
1938	}
1939
1940	return kTRUE;
1941	}
1942
1943	// --------------------------------------------------------------------------
1944	//
1945	// Write the result into the output file GetOutputFile(), if fOutputPath exists.
1946	//
1947	// The following containers are written:
1948	// - MStatusDisplay
1949	// - MCalibrationChargeCam or MCalibrationIntensityChargeCam
1950	// - MCalibrationBlindCam or MCalibrationIntensityBlindCam
1951	// - MCalibrationQECam or MCalibrationIntensityQECam
1952	// - MCalibrationChargePINDiode
1953	// - MBadPixelsCam
1954	// If the flag kRelTimes is set, then also:
1955	// - MCalibrationRelTimeCam or MCalibrationIntensityRelTimeCam
1956	//
1957	Bool_t MJCalibration::WriteResult(TObject *geom)
1958	{
1959	if (fPathOut.IsNull())
1960	return kTRUE;
1961
1962	const TString oname(GetOutputFile());
1963
1964	*fLog << inf << "Writing to file: " << oname << endl;
1965
1966	TFile file(oname, "UPDATE", "File created by MJCalibration", 9);
1967	if (!file.IsOpen())
1968	{
1969	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
1970	return kFALSE;
1971	}
1972
1973	TObjArray cont;
1974	if (fDisplay)
1975	cont.Add(fDisplay);
1976
1977	if (IsIntensity())
1978	{
1979	cont.Add(&fIntensBadCam);
1980	cont.Add(&fIntensCalibCam);
1981	cont.Add(&fIntensQECam);
1982	cont.Add(&fIntensBlindCam);
1983	}
1984	else
1985	{
1986	cont.Add(&fBadPixels);
1987	cont.Add(&fCalibrationCam);
1988	cont.Add(&fQECam);
1989	cont.Add(&fCalibrationBlindCam);
1990	}
1991	cont.Add(&fCalibrationPINDiode);
1992
1993	if (IsRelTimes())
1994	cont.Add(IsIntensity() ? (TObject)&fIntensRelTimeCam : (TObject)&fRelTimeCam);
1995
1996	if (!geom)
1997	*fLog << warn << " - WARNING - MGeomCam... not found!" << endl;
1998	else
1999	cont.Add(geom);
2000
2001	return WriteContainer(cont);
2002	}
2003
2004	// --------------------------------------------------------------------------
2005	//
2006	// Write the calibration histograms into the output file GetOutputFile(),
2007	// if fOutputPath exists.
2008	//
2009	// The following containers are written:
2010	// - MHCalibrationChargeCam
2011	// - MHCalibrationChargeBlindCam
2012	// - MHCalibrationChargePINDiode
2013	// If the flag kRelTimes is set, then also:
2014	// - MHCalibrationRelTimeBlindCam
2015	//
2016	Bool_t MJCalibration::WriteHists(MParList &plist)
2017	{
2018	if (fPathOut.IsNull())
2019	return kTRUE;
2020
2021	const TString oname(GetOutputFile());
2022
2023	*fLog << inf << "Writing to file: " << oname << endl;
2024
2025	TFile file(oname, "UPDATE", "File created by MJCalibration", 9);
2026	if (!file.IsOpen())
2027	{
2028	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
2029	return kFALSE;
2030	}
2031
2032	TObjArray cont;
2033	cont.Add(plist.FindObject("MHCalibrationChargeCam"));
2034	cont.Add(plist.FindObject("MHCalibrationChargeBlindCam"));
2035	cont.Add(plist.FindObject("MHCalibrationChargePINDiode"));
2036	if (IsRelTimes())
2037	cont.Add(plist.FindObject("MHCalibrationRelTimeCam"));
2038
2039	return WriteContainer(cont);
2040	}
2041
2042	void MJCalibration::DisplayDoubleProject(MHCamera cam, const char whatsmall, const char* whatbig) const
2043	{
2044
2045	TArrayI inner(1);
2046	inner[0] = 0;
2047
2048	TArrayI outer(1);
2049	outer[0] = 1;
2050
2051	TArrayI s1(3);
2052	s1[0] = 6;
2053	s1[1] = 1;
2054	s1[2] = 2;
2055
2056	TArrayI s2(3);
2057	s2[0] = 3;
2058	s2[1] = 4;
2059	s2[2] = 5;
2060
2061	TVirtualPad *pad = gPad;
2062	pad->Divide(2,1);
2063
2064	TH1D *inout[2];
2065
2066	for (int i=0; i<2; i++)
2067	{
2068	pad->cd(i+1);
2069	gPad->SetBorderMode(0);
2070	gPad->SetTicks();
2071
2072	inout[i] = cam->ProjectionS(TArrayI(), TArrayI(1,&i), i==0 ? "Inner" : "Outer");
2073	FixDataCheckHist(inout[i]);
2074	inout[i]->SetTitle(Form("%s %s",cam->GetTitle(),i==0 ? "Inner" : "Outer"));
2075	inout[i]->SetDirectory(NULL);
2076	inout[i]->SetLineColor(kRed+i);
2077	inout[i]->SetBit(kCanDelete);
2078	inout[i]->Draw();
2079	//
2080	// Display the outliers as dead and noisy pixels
2081	//
2082	if (!inout[i]->Fit("gaus","0Q"))
2083	DisplayOutliers(inout[i],whatsmall,whatbig);
2084
2085	gPad->Modified();
2086	gPad->Update();
2087	TPaveStats st = (TPaveStats)inout[i]->GetListOfFunctions()->FindObject("stats");
2088	st->SetY1NDC(0.6);
2089	st->SetY2NDC(0.9);
2090	st->SetX1NDC(0.55);
2091	st->SetX2NDC(0.99);
2092	gPad->Modified();
2093	gPad->Update();
2094
2095	TLegend *leg2 = new TLegend(0.55,0.4,0.99,0.6);
2096
2097	//
2098	// Display the two half of the camera separately
2099	//
2100	TH1D *half[2];
2101	half[0] = cam->ProjectionS(s1, TArrayI(1,&i), "Sector 6-1-2");
2102	half[1] = cam->ProjectionS(s2, TArrayI(1,&i), "Sector 3-4-5");
2103
2104	for (int j=0; j<2; j++)
2105	{
2106	half[j]->SetLineColor(kRed+i+2*j+1);
2107	half[j]->SetDirectory(NULL);
2108	half[j]->SetBit(kCanDelete);
2109	half[j]->Draw("same");
2110	leg2->AddEntry(half[j], half[j]->GetName(), "l");
2111	}
2112	leg2->Draw();
2113	}
2114	}

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