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Last change on this file since 6131 was 6078, checked in by tbretz, 20 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	! Author(s): Markus Gaug, 02/2004 <mailto:markus@ifae.es>
20	!
21	! Copyright: MAGIC Software Development, 2000-2004
22	!
23	!
24	\* ======================================================================== */
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibration
28	//
29	// Do one calibration loop over serious of runs with the same pulser
30	// colour and the same intensity. The following containers (rectangular) and
31	// tasks (ellipses) are called to produce an MCalibrationChargeCam and to
32	// update the MCalibrationQECam: (MCalibrate is not called from this class)
33	//
34	//Begin_Html
35	/*
36	<img src="images/CalibClasses.gif">
37	*/
38	//End_Html
39	//
40	// Different signal extractors can be set with the command SetExtractor()
41	// Only extractors deriving from MExtractor can be set, default is MExtractSlidingWindow
42	//
43	// Different arrival time extractors can be set with the command SetTimeExtractor()
44	// Only extractors deriving from MExtractTime can be set, default is MExtractTimeSpline
45	//
46	// At the end of the eventloop, plots and results are displayed, depending on
47	// the flags set (see DisplayResult())
48	//
49	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
50	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
51	// Otherwise, (default: SetNormalDisplay()), a good selection of plots is given
52	//
53	// If the flag SetDataCheck() is set, the calibration is used as in the data check at
54	// La Palma, which mean especially running on raw data files.
55	//
56	// The absolute light calibration devices Blind Pixel and PIN Diode can be switched on
57	// and off with the commands:
58	//
59	// - SetUseBlindPixel(Bool_t )
60	// - SetUsePINDiode(Bool_t )
61	//
62	// See also: MHCalibrationChargePix, MHCalibrationChargeCam, MHGausEvents
63	// MHCalibrationChargeBlindPix, MHCalibrationChargePINDiode
64	// MCalibrationChargePix, MCalibrationChargeCam, MCalibrationChargeCalc
65	// MCalibrationBlindPix, MCalibrationChargePINDiode,
66	// MCalibrationQECam, MBadPixelsPix, MBadPixelsCam
67	//
68	// If the flag RelTimeCalibration() is set, a calibration of the relative arrival
69	// times is also performed. The following containers (rectangular) and
70	// tasks (ellipses) are called to produce an MCalibrationRelTimeCam used by
71	// MCalibrateTime to correct timing offset between pixels: (MCalibrateTime is not
72	// called from this class)
73	//
74	//Begin_Html
75	/*
76	<img src="images/RelTimeClasses.gif">
77	*/
78	//End_Html
79	//
80	// Different arrival time extractors can be set directly with the command
81	// SetTimeExtractor(MExtractor *)
82	//
83	// Resource file entries are case sensitive!
84	//
85	// See also: MHCalibrationRelTimePix, MHCalibrationRelTimeCam, MHGausEvents
86	// MCalibrationRelTimePix, MCalibrationRelTimeCam
87	// MBadPixelsPix, MBadPixelsCam
88	//
89	/////////////////////////////////////////////////////////////////////////////
90	#include "MJCalibration.h"
91
92	#include <TFile.h>
93	#include <TF1.h>
94	#include <TStyle.h>
95	#include <TCanvas.h>
96	#include <TSystem.h>
97	#include <TLine.h>
98	#include <TLatex.h>
99	#include <TLegend.h>
100	#include <TRegexp.h>
101	#include <TPaveText.h>
102	#include <TPaveStats.h>
103	#include <TEnv.h>
104
105	#include "MLog.h"
106	#include "MLogManip.h"
107
108	#include "MRunIter.h"
109	#include "MSequence.h"
110	#include "MParList.h"
111	#include "MTaskList.h"
112	#include "MEvtLoop.h"
113
114	#include "MHCamera.h"
115	#include "MGeomCam.h"
116
117	#include "MPedestalCam.h"
118	#include "MCalibColorSteer.h"
119
120	#include "MCalibrationIntensityChargeCam.h"
121	#include "MCalibrationIntensityBlindCam.h"
122	#include "MCalibrationIntensityRelTimeCam.h"
123	#include "MCalibrationIntensityQECam.h"
124
125	#include "MCalibrationPatternDecode.h"
126	#include "MCalibrationCam.h"
127	#include "MCalibrationQECam.h"
128	#include "MCalibrationQEPix.h"
129	#include "MCalibrationChargeCam.h"
130	#include "MCalibrationChargePix.h"
131	#include "MCalibrationChargePINDiode.h"
132	#include "MCalibrationBlindPix.h"
133	#include "MCalibrationBlindCam.h"
134	#include "MCalibrationBlindCamOneOldStyle.h"
135	#include "MCalibrationBlindCamTwoNewStyle.h"
136	#include "MCalibrationBlindCamThreeNewStyle.h"
137	#include "MCalibrationChargeCalc.h"
138	#include "MCalibColorSet.h"
139	#include "MCalibrationRelTimeCam.h"
140	#include "MCalibrationRelTimeCalc.h"
141
142	#include "MHGausEvents.h"
143	#include "MHCalibrationCam.h"
144	#include "MHCalibrationChargeCam.h"
145	#include "MHCalibrationChargeBlindCam.h"
146	#include "MHCalibrationChargePINDiode.h"
147	#include "MHCalibrationRelTimeCam.h"
148
149	#include "MReadMarsFile.h"
150	#include "MPedCalcPedRun.h"
151	#include "MRawFileRead.h"
152	#include "MGeomApply.h"
153	#include "MTaskEnv.h"
154	#include "MBadPixelsMerge.h"
155	#include "MBadPixelsCam.h"
156	#include "MExtractTime.h"
157	#include "MExtractor.h"
158	#include "MExtractPINDiode.h"
159	#include "MExtractBlindPixel.h"
160	#include "MExtractSlidingWindow.h"
161	#include "MExtractTimeFastSpline.h"
162	#include "MFCosmics.h"
163	#include "MContinue.h"
164	#include "MFillH.h"
165
166	#include "MArrivalTimeCam.h"
167
168	#include "MStatusDisplay.h"
169
170	ClassImp(MJCalibration);
171
172	using namespace std;
173
174	const Int_t MJCalibration::gkIFAEBoxInaugurationRun = 20113;
175	const Int_t MJCalibration::gkSecondBlindPixelInstallation = 31693;
176	const Int_t MJCalibration::gkSpecialPixelsContInstallation = 34057;
177	const Int_t MJCalibration::gkThirdBlindPixelInstallation = 43308;
178	const TString MJCalibration::fgReferenceFile = "mjobs/calibrationref.rc";
179	// --------------------------------------------------------------------------
180	//
181	// Default constructor.
182	//
183	// - Sets fRuns to 0, fExtractor to NULL, fTimeExtractor to NULL, fColor to kNONE,
184	// fDisplay to kNormalDisplay, kRelTimes to kFALSE, kataCheck to kFALSE, kDebug to kFALSE,
185	// kIntensity to kFALSE
186	// - SetUseBlindPixel()
187	// - SetUsePINDiode()
188	//
189	MJCalibration::MJCalibration(const char name, const char title)
190	: fRuns(0), fExtractor(NULL), fTimeExtractor(NULL),
191	fColor(MCalibrationCam::kNONE), fDisplayType(kDataCheckDisplay),
192	fGeometry("MGeomCamMagic")
193	{
194
195	fName = name ? name : "MJCalibration";
196	fTitle = title ? title : "Tool to create the calibration constants for one calibration run";
197
198	SetUseBlindPixel();
199	SetUsePINDiode();
200
201	SetRelTimeCalibration();
202	SetDataCheck(kFALSE);
203	SetDebug(kFALSE);
204	SetIntensity(kFALSE);
205
206	SetNoStorage(kFALSE);
207	SetHistsStorage(kFALSE);
208
209	SetReferenceFile();
210
211	fConvFADC2PheMin = 0.;
212	fConvFADC2PheMax = 1.5;
213	fConvFADC2PhotMin = 0.;
214	fConvFADC2PhotMax = 10.;
215	fQEMin = 0.;
216	fQEMax = 0.3;
217	fArrivalTimeMin = 1.;
218	fArrivalTimeMax = 10.;
219
220	fRefConvFADC2PheInner = 0.14;
221	fRefConvFADC2PheOuter = 0.4;
222	fRefConvFADC2PhotInner = 0.8;
223	fRefConvFADC2PhotOuter = 3.8;
224	fRefQEInner = 0.18;
225	fRefQEOuter = 0.12;
226	fRefArrivalTimeInner = 4.5;
227	fRefArrivalTimeOuter = 5.0;
228	fRefArrivalTimeRmsInner = 0.5;
229	fRefArrivalTimeRmsOuter = 0.5;
230
231	}
232
233	void MJCalibration::DrawTab(MParList &plist, const char cont, const char name, Option_t *opt)
234	{
235	TObject *obj = plist.FindObject(cont);
236	if (!obj)
237	return;
238
239	fDisplay->AddTab(name);
240	obj->DrawClone(opt);
241	}
242
243	// --------------------------------------------------------------------------
244	//
245	// Display the results in MStatusDisplay:
246	//
247	// - Add "Calibration" to the MStatusDisplay title
248	// - Retrieve the MGeomCam from MParList
249	// - Initialize the following MHCamera's:
250	// 1) MCalibrationPix::GetMean()
251	// 2) MCalibrationPix::Sigma()
252	// 3) MCalibrationChargePix::GetRSigma()
253	// 4) MCalibrationChargePix::GetRSigmaPerCharge()
254	// 5) MCalibrationChargePix::GetPheFFactorMethod()
255	// 6) MCalibrationChargePix::GetMeanConvFADC2Phe()
256	// 7) MCalibrationChargePix::GetMeanFFactorFADC2Phot()
257	// 8) MCalibrationQEPix::GetQECascadesFFactor()
258	// 9) MCalibrationQEPix::GetQECascadesBlindPixel()
259	// 10) MCalibrationQEPix::GetQECascadesPINDiode()
260	// 11) MCalibrationQEPix::GetQECascadesCombined()
261	// 12) MCalibrationQEPix::IsAverageQEFFactorAvailable()
262	// 13) MCalibrationQEPix::IsAverageQEBlindPixelAvailable()
263	// 14) MCalibrationQEPix::IsAverageQEPINDiodeAvailable()
264	// 15) MCalibrationQEPix::IsAverageQECombinedAvailable()
265	// 16) MCalibrationChargePix::IsHiGainSaturation()
266	// 17) MCalibrationPix::GetHiLoMeansDivided()
267	// 18) MCalibrationPix::GetHiLoSigmasDivided()
268	// 19) MCalibrationChargePix::GetHiGainPickup()
269	// 20) MCalibrationChargePix::GetLoGainPickup()
270	// 21) MCalibrationChargePix::GetHiGainBlackout()
271	// 22) MCalibrationChargePix::GetLoGainBlackout()
272	// 23) MCalibrationPix::IsExcluded()
273	// 24) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnsuitableRun)
274	// 25) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnreliableRun)
275	// 26) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kHiGainOscillating)
276	// 27) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kLoGainOscillating)
277	// 28) MCalibrationChargePix::GetAbsTimeMean()
278	// 29) MCalibrationChargePix::GetAbsTimeRms()
279	//
280	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
281	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
282	// and otherwise, (default: SetNormalDisplay()), a good selection of plots is given
283	//
284	void MJCalibration::DisplayResult(MParList &plist)
285	{
286	if (!fDisplay)
287	return;
288
289	TString drawoption = "nonew ";
290	if (fDisplayType == kDataCheckDisplay)
291	drawoption += "datacheck";
292	if (fDisplayType == kFullDisplay)
293	drawoption += "all";
294
295	if (IsUsePINDiode())
296	DrawTab(plist, "MHCalibrationChargePINDiode", "PINDiode", drawoption);
297	if (IsUseBlindPixel())
298	DrawTab(plist, "MHCalibrationChargeBlindCam", "BlindPix", drawoption);
299	if (IsRelTimes())
300	DrawTab(plist, "MHCalibrationRelTimeCam", "Time", drawoption);
301	DrawTab(plist, "MHCalibrationChargeCam", "Charge", drawoption);
302
303	//
304	// Update display
305	//
306	TString title = fDisplay->GetTitle();
307	title += "-- Calibration ";
308	title += fSequence.IsValid() ? Form("calib%08d", fSequence.GetSequence()) : (const char*)fRuns->GetRunsAsString();
309	title += " --";
310	fDisplay->SetTitle(title);
311
312	//
313	// Get container from list
314	//
315	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
316
317	// Create histograms to display
318	MHCamera disp1 (geomcam, "Charge", "Fitted Mean Signal (Charges)");
319	MHCamera disp2 (geomcam, "SigmaCharge", "Sigma of Fitted Signal");
320	MHCamera disp3 (geomcam, "RSigma", "Reduced Sigmas");
321	MHCamera disp4 (geomcam, "RSigmaPerCharge", "Reduced Sigma per Charge");
322	MHCamera disp5 (geomcam, "NumPhes", "Number Photo-electrons");
323	MHCamera disp6 (geomcam, "ConvFADC2Phes", "Conversion Factor to Phes");
324	MHCamera disp7 (geomcam, "TotalFFactor", "Total F-Factor(F-Factor Method)");
325	MHCamera disp8 (geomcam, "CascadesQEFFactor", "Cascades QE (F-Factor Method)");
326	MHCamera disp9 (geomcam, "CascadesQEBlindPix","Cascades QE (Blind Pixel Method)");
327	MHCamera disp10(geomcam, "CascadesQEPINDiode","Cascades QE (PIN Diode Method)");
328	MHCamera disp11(geomcam, "CascadesQECombined","Cascades QE (Combined Method)");
329	MHCamera disp12(geomcam, "FFactorValid", "Pixels with valid F-Factor calibration");
330	MHCamera disp13(geomcam, "BlindPixelValid", "Pixels with valid BlindPixel calibration");
331	MHCamera disp14(geomcam, "PINdiodeValid", "Pixels with valid PINDiode calibration");
332	MHCamera disp15(geomcam, "CombinedValid", "Pixels with valid Combined calibration");
333	MHCamera disp16(geomcam, "Saturation", "Pixels with saturated Hi Gain");
334	MHCamera disp17(geomcam, "ConversionMeans", "Conversion HiGain.vs.LoGain Means");
335	MHCamera disp18(geomcam, "ConversionSigmas", "Conversion HiGain.vs.LoGain Sigmas");
336	MHCamera disp19(geomcam, "HiGainPickup", "Number Pickup events Hi Gain");
337	MHCamera disp20(geomcam, "LoGainPickup", "Number Pickup events Lo Gain");
338	MHCamera disp21(geomcam, "HiGainBlackout", "Number Blackout events Hi Gain");
339	MHCamera disp22(geomcam, "LoGainBlackout", "Number Blackout events Lo Gain");
340	MHCamera disp23(geomcam, "Excluded", "Pixels previously excluded");
341	MHCamera disp24(geomcam, "UnSuitable", "Pixels not suited for further analysis");
342	MHCamera disp25(geomcam, "UnReliable", "Pixels suitable, but not reliable for further analysis");
343	MHCamera disp26(geomcam, "HiGainOscillating", "Oscillating Pixels High Gain");
344	MHCamera disp27(geomcam, "LoGainOscillating", "Oscillating Pixels Low Gain");
345	MHCamera disp28(geomcam, "AbsTimeMean", "Abs. Arrival Times");
346	MHCamera disp29(geomcam, "AbsTimeRms", "RMS of Arrival Times");
347	MHCamera disp30(geomcam, "MeanTime", "Mean Rel. Arrival Times");
348	MHCamera disp31(geomcam, "SigmaTime", "Sigma Rel. Arrival Times");
349	MHCamera disp32(geomcam, "TimeProb", "Probability of Time Fit");
350	MHCamera disp33(geomcam, "TimeNotFitValid", "Pixels with not valid fit results");
351	MHCamera disp34(geomcam, "TimeOscillating", "Oscillating Pixels");
352	MHCamera disp35(geomcam, "TotalConv", "Conversion Factor to photons");
353	MHCamera disp36(geomcam, "RMSperMean", "Charge histogram RMS per Mean");
354
355	MCalibrationChargeCam *cam = NULL;
356	MCalibrationQECam *qecam = NULL;
357	MCalibrationRelTimeCam *relcam = NULL;
358	MBadPixelsCam *badcam = NULL;
359
360	if (IsIntensity())
361	{
362	cam = (MCalibrationChargeCam*) fIntensCalibCam.GetCam();
363	qecam = (MCalibrationQECam*) fIntensQECam.GetCam();
364	relcam = (MCalibrationRelTimeCam*)fIntensRelTimeCam.GetCam();
365	badcam = (MBadPixelsCam*) fIntensBadCam.GetCam();
366	}
367	else
368	{
369	cam = &fCalibrationCam;
370	qecam = &fQECam;
371	relcam = &fRelTimeCam;
372	badcam = &fBadPixels;
373	}
374
375	// Fitted charge means and sigmas
376	disp1.SetCamContent(*cam, 0);
377	disp1.SetCamError( *cam, 1);
378	disp2.SetCamContent(*cam, 2);
379	disp2.SetCamError( *cam, 3);
380
381	// Reduced Sigmas and reduced sigmas per charge
382	disp3.SetCamContent(*cam, 5);
383	disp3.SetCamError( *cam, 6);
384	disp4.SetCamContent(*cam, 7);
385	disp4.SetCamError( *cam, 8);
386
387	// F-Factor Method
388	disp5.SetCamContent(*cam, 9);
389	disp5.SetCamError( *cam, 10);
390	disp6.SetCamContent(*cam, 11);
391	disp6.SetCamError( *cam, 12);
392	disp7.SetCamContent(*cam, 13);
393	disp7.SetCamError( *cam, 14);
394
395	// Quantum Efficiencies
396	disp8.SetCamContent (*qecam, 0 );
397	disp8.SetCamError (*qecam, 1 );
398	disp9.SetCamContent (*qecam, 2 );
399	disp9.SetCamError (*qecam, 3 );
400	disp10.SetCamContent(*qecam, 4 );
401	disp10.SetCamError (*qecam, 5 );
402	disp11.SetCamContent(*qecam, 6 );
403	disp11.SetCamError (*qecam, 7 );
404
405	// Valid flags
406	disp12.SetCamContent(*qecam, 8 );
407	disp13.SetCamContent(*qecam, 9 );
408	disp14.SetCamContent(*qecam, 10);
409	disp15.SetCamContent(*qecam, 11);
410
411	// Conversion Hi-Lo
412	disp16.SetCamContent(*cam, 25);
413	disp17.SetCamContent(*cam, 16);
414	disp17.SetCamError (*cam, 17);
415	disp18.SetCamContent(*cam, 18);
416	disp18.SetCamError (*cam, 19);
417
418	// Pickup and Blackout
419	disp19.SetCamContent(*cam, 21);
420	disp20.SetCamContent(*cam, 22);
421	disp21.SetCamContent(*cam, 23);
422	disp22.SetCamContent(*cam, 24);
423
424	// Pixels with defects
425	disp23.SetCamContent(*cam, 20);
426	disp24.SetCamContent(*badcam, 6);
427	disp25.SetCamContent(*badcam, 7);
428
429	// Oscillations
430	disp26.SetCamContent(*badcam, 10);
431	disp27.SetCamContent(*badcam, 11);
432
433	// Arrival Times
434	disp28.SetCamContent(*cam, 26);
435	disp28.SetCamError( *cam, 27);
436	disp29.SetCamContent(*cam, 27);
437
438	// RMS and Mean
439	disp36.SetCamContent(*cam,32);
440
441	disp1.SetYTitle("Q [FADC cnts]");
442	disp2.SetYTitle("\\sigma_{Q} [FADC cnts]");
443
444	disp3.SetYTitle("\\sqrt{\\sigma^{2}_{Q} - RMS^{2}_{Ped}} [FADC cnts]");
445	disp4.SetYTitle("Red.Sigma/<Q> [1]");
446
447	disp5.SetYTitle("Photo-electons [1]");
448	disp6.SetYTitle("Conv.Factor [PhE/FADC cnts]");
449	disp7.SetYTitle("Total F-Factor [1]");
450
451	disp8.SetYTitle("QE [1]");
452	disp9.SetYTitle("QE [1]");
453	disp10.SetYTitle("QE [1]");
454	disp11.SetYTitle("QE [1]");
455
456	disp12.SetYTitle("[1]");
457	disp13.SetYTitle("[1]");
458	disp14.SetYTitle("[1]");
459	disp15.SetYTitle("[1]");
460	disp16.SetYTitle("[1]");
461
462	disp17.SetYTitle("<Q>(High)/<Q>(Low) [1]");
463	disp18.SetYTitle("\\sigma_{Q}(High)/\\sigma_{Q}(Low) [1]");
464
465	disp19.SetYTitle("[1]");
466	disp20.SetYTitle("[1]");
467	disp21.SetYTitle("[1]");
468	disp22.SetYTitle("[1]");
469	// disp23.SetYTitle("[1]");
470	// disp24.SetYTitle("[1]");
471	// disp25.SetYTitle("[1]");
472	disp26.SetYTitle("[1]");
473	disp27.SetYTitle("[1]");
474
475	disp28.SetYTitle("Mean Abs. Time [FADC sl.]");
476	disp29.SetYTitle("RMS Abs. Time [FADC sl.]");
477
478	disp35.SetYTitle("Conv.Factor [Ph/FADC cnts]");
479
480	disp36.SetYTitle("Charge RMS/<Q> [1]");
481
482	for (UInt_t i=0;i<geomcam.GetNumPixels();i++)
483	{
484
485	MCalibrationChargePix &pix = (MCalibrationChargePix&)(*cam) [i];
486	MCalibrationQEPix &qe = (MCalibrationQEPix&) (*qecam)[i];
487
488	if (!pix.IsFFactorMethodValid())
489	continue;
490
491	const Float_t convphe = pix.GetMeanConvFADC2Phe();
492	const Float_t quaeff = qe.GetQECascadesFFactor(0.);
493
494	disp35.Fill(i,convphe/quaeff);
495	disp35.SetUsed(i);
496	}
497
498
499	if (IsRelTimes())
500	{
501	disp30.SetCamContent(*relcam,0);
502	disp30.SetCamError( *relcam,1);
503	disp31.SetCamContent(*relcam,2);
504	disp31.SetCamError( *relcam,3);
505	disp32.SetCamContent(*relcam,4);
506	disp33.SetCamContent(fBadPixels,20);
507	disp34.SetCamContent(fBadPixels,21);
508
509	disp30.SetYTitle("Time Offset [FADC units]");
510	disp31.SetYTitle("Timing resolution [FADC units]");
511	disp32.SetYTitle("P_{Time} [1]");
512	disp33.SetYTitle("[1]");
513	disp34.SetYTitle("[1]");
514	}
515
516	if (fDisplayType == kDataCheckDisplay)
517	{
518
519	TCanvas &c1 = fDisplay->AddTab("FitCharge");
520	c1.Divide(3, 3);
521
522	//
523	// MEAN CHARGES
524	//
525
526	c1.cd(1);
527	gPad->SetBorderMode(0);
528	gPad->SetTicks();
529	MHCamera obj1=(MHCamera)disp1.DrawCopy("hist");
530	//
531	// for the datacheck, fix the ranges!!
532	//
533	// obj1->SetMinimum(fChargeMin);
534	// obj1->SetMaximum(fChargeMax);
535	//
536	// Set the datacheck sizes:
537	//
538	FixDataCheckHist((TH1D*)obj1);
539	obj1->SetStats(kFALSE);
540	//
541	// set reference lines
542	//
543	// DisplayReferenceLines(obj1,0);
544
545	c1.cd(4);
546	gPad->SetBorderMode(0);
547	obj1->SetPrettyPalette();
548	obj1->Draw();
549
550	c1.cd(7);
551	gPad->SetBorderMode(0);
552	gPad->SetTicks();
553	TH1D obj2 = (TH1D)obj1->Projection(obj1->GetName());
554	obj2->Draw();
555	obj2->SetBit(kCanDelete);
556	obj2->Fit("gaus","Q");
557	TF1 *fun2 = obj2->GetFunction("gaus");
558	fun2->SetLineColor(kYellow);
559	gPad->Modified();
560	gPad->Update();
561	TPaveStats st = (TPaveStats)obj2->GetListOfFunctions()->FindObject("stats");
562	st->SetY1NDC(0.55);
563	st->SetY2NDC(0.89);
564	st->SetX1NDC(0.65);
565	st->SetX2NDC(0.99);
566	gPad->Modified();
567	gPad->Update();
568	//
569	// Set the datacheck sizes:
570	//
571	FixDataCheckHist(obj2);
572	obj2->SetStats(1);
573
574	//
575	// Display the outliers as dead and noisy pixels
576	//
577	DisplayOutliers(obj2,"low-ampl.","high-ampl.");
578	TLatex flattex;
579	flattex.SetTextSize(0.07);
580	const Double_t minl = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
581	const Double_t maxl = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
582	flattex.DrawLatex(minl+0.015*(maxl-minl),obj2->GetBinContent(obj2->GetMaximumBin())/1.35,
583	Form("Flatfield precision: %4.2f%%",
584	fun2->GetParameter(2)/fun2->GetParameter(1)*100.));
585
586	//
587	// RMS per Charge
588	//
589
590	c1.cd(2);
591	gPad->SetBorderMode(0);
592	gPad->SetTicks();
593	MHCamera obj3=(MHCamera)disp36.DrawCopy("hist");
594	//
595	// for the datacheck, fix the ranges!!
596	//
597	// obj3->SetMinimum(0.);
598	// obj3->SetMaximum(fChargeMax);
599	//
600	// Set the datacheck sizes:
601	//
602	FixDataCheckHist((TH1D*)obj3);
603	obj3->SetStats(kFALSE);
604	//
605	// set reference lines
606	//
607	// DisplayReferenceLines(obj3,0);
608
609	c1.cd(5);
610	gPad->SetBorderMode(0);
611	obj3->SetPrettyPalette();
612	obj3->Draw();
613
614	c1.cd(8);
615	gPad->SetBorderMode(0);
616	if (geomcam.InheritsFrom("MGeomCamMagic"))
617	DisplayDoubleProject(&disp36, "dead", "noisy");
618
619	//
620	// PHOTO ELECTRONS
621	//
622
623	c1.cd(3);
624	gPad->SetBorderMode(0);
625	gPad->SetTicks();
626	MHCamera obj4=(MHCamera)disp5.DrawCopy("hist");
627	//
628	// for the datacheck, fix the ranges!!
629	//
630	// obj3->SetMinimum(fChargeMin);
631	// obj3->SetMaximum(fChargeMax);
632	//
633	// Set the datacheck sizes:
634	//
635	FixDataCheckHist((TH1D*)obj4);
636	obj4->SetStats(kFALSE);
637	//
638	// set reference lines
639	//
640	// DisplayReferenceLines(obj3,0);
641
642	c1.cd(6);
643	gPad->SetBorderMode(0);
644	obj4->SetPrettyPalette();
645	obj4->Draw();
646
647	c1.cd(9);
648	gPad->SetBorderMode(0);
649	if (geomcam.InheritsFrom("MGeomCamMagic"))
650	DisplayDoubleProject(&disp5, "dead", "noisy");
651
652	//
653	// CONVERSION FACTORS
654	//
655	TCanvas &c2 = fDisplay->AddTab("Conversion");
656	c2.Divide(3,3);
657
658	c2.cd(1);
659	gPad->SetBorderMode(0);
660	gPad->SetTicks();
661	MHCamera obj5=(MHCamera)disp6.DrawCopy("hist");
662	//
663	// for the datacheck, fix the ranges!!
664	//
665	obj5->SetMinimum(fConvFADC2PheMin);
666	obj5->SetMaximum(fConvFADC2PheMax);
667	//
668	// Set the datacheck sizes:
669	//
670	FixDataCheckHist((TH1D*)obj5);
671	obj5->SetStats(kFALSE);
672	//
673	// set reference lines
674	//
675	DisplayReferenceLines(obj5,2);
676
677	c2.cd(4);
678	gPad->SetBorderMode(0);
679	obj5->SetPrettyPalette();
680	obj5->Draw();
681
682	c2.cd(7);
683	gPad->SetBorderMode(0);
684	if (geomcam.InheritsFrom("MGeomCamMagic"))
685	DisplayDoubleProject(&disp6, "noisy", "dead");
686
687	//
688	// QUANTUM EFFICIENCY
689	//
690	c2.cd(2);
691	gPad->SetBorderMode(0);
692	gPad->SetTicks();
693	MHCamera obj6=(MHCamera)disp8.DrawCopy("hist");
694	//
695	// for the datacheck, fix the ranges!!
696	//
697	obj6->SetMinimum(fQEMin);
698	obj6->SetMaximum(fQEMax);
699	//
700	// Set the datacheck sizes:
701	//
702	FixDataCheckHist((TH1D*)obj6);
703	obj6->SetStats(kFALSE);
704	//
705	// set reference lines
706	//
707	DisplayReferenceLines(obj6,0);
708
709	c2.cd(5);
710	gPad->SetBorderMode(0);
711	obj6->SetPrettyPalette();
712	obj6->Draw();
713
714	c2.cd(8);
715	gPad->SetBorderMode(0);
716	if (geomcam.InheritsFrom("MGeomCamMagic"))
717	DisplayDoubleProject(&disp8, "noisy", "dead");
718
719	//
720	// CONVERSION FADC TO PHOTONS
721	//
722
723	c2.cd(3);
724	gPad->SetBorderMode(0);
725	gPad->SetTicks();
726	MHCamera obj7=(MHCamera)disp35.DrawCopy("hist");
727	//
728	// for the datacheck, fix the ranges!!
729	//
730	obj7->SetMinimum(fConvFADC2PhotMin);
731	obj7->SetMaximum(fConvFADC2PhotMax);
732	//
733	// Set the datacheck sizes:
734	//
735	FixDataCheckHist((TH1D*)obj7);
736	obj7->SetStats(kFALSE);
737	//
738	// set reference lines
739	//
740	DisplayReferenceLines(obj7,1);
741
742	c2.cd(6);
743	gPad->SetBorderMode(0);
744	obj7->SetPrettyPalette();
745	obj7->Draw();
746	c2.cd(9);
747	gPad->SetBorderMode(0);
748	if (geomcam.InheritsFrom("MGeomCamMagic"))
749	DisplayDoubleProject(&disp35, "noisy", "dead");
750
751	//
752	// ARRIVAL TIMES
753	//
754	TCanvas &c3 = fDisplay->AddTab("AbsTimes");
755	c3.Divide(2,3);
756
757	c3.cd(1);
758	gPad->SetBorderMode(0);
759	gPad->SetTicks();
760	MHCamera obj10=(MHCamera)disp28.DrawCopy("hist");
761	//
762	// for the datacheck, fix the ranges!!
763	//
764	obj10->SetMinimum(fArrivalTimeMin);
765	obj10->SetMaximum(fArrivalTimeMax);
766	//
767	// Set the datacheck sizes:
768	//
769	FixDataCheckHist((TH1D*)obj10);
770	obj10->SetStats(kFALSE);
771	//
772	// set reference lines
773	//
774	DisplayReferenceLines(obj10,3);
775
776	c3.cd(3);
777	gPad->SetBorderMode(0);
778	obj10->SetPrettyPalette();
779	obj10->Draw();
780
781	c3.cd(5);
782	gPad->SetBorderMode(0);
783	if (geomcam.InheritsFrom("MGeomCamMagic"))
784	DisplayDoubleProject(&disp28, "early", "late");
785
786	//
787	// ARRIVAL TIMES JITTER
788	//
789	c3.cd(2);
790	gPad->SetBorderMode(0);
791	gPad->SetTicks();
792	MHCamera obj11=(MHCamera)disp29.DrawCopy("hist");
793	//
794	// for the datacheck, fix the ranges!!
795	//
796	// obj11->SetMinimum(fArrivalTimeMin);
797	// obj11->SetMaximum(fArrivalTimeMax);
798	//
799	// Set the datacheck sizes:
800	//
801	FixDataCheckHist((TH1D*)obj11);
802	obj11->SetStats(kFALSE);
803	//
804	// set reference lines
805	//
806	DisplayReferenceLines(obj11,4);
807
808	c3.cd(4);
809	gPad->SetBorderMode(0);
810	obj11->SetPrettyPalette();
811	obj11->Draw();
812
813	c3.cd(6);
814	gPad->SetBorderMode(0);
815	if (geomcam.InheritsFrom("MGeomCamMagic"))
816	DisplayDoubleProject(&disp29, "", "jittering");
817
818	//
819	// UNSUITABLE PIXELS
820	//
821	TCanvas &c4 = fDisplay->AddTab("Defect");
822	c4.Divide(2,2);
823
824	c4.cd(1);
825	gPad->SetBorderMode(0);
826	gPad->SetTicks();
827	MHCamera obj8=(MHCamera)disp24.DrawCopy("hist");
828	//
829	// for the datacheck, fix the ranges!!
830	//
831	const Double_t max = 11.;
832	obj8->SetMinimum(0.);
833	obj8->SetMaximum(11.);
834	//
835	// Set the datacheck sizes:
836	//
837	FixDataCheckHist((TH1D*)obj8);
838	obj8->SetStats(kFALSE);
839
840	gStyle->SetPalette(1);
841	const Int_t numcol = gStyle->GetNumberOfColors()-3;
842
843	TPaveText *pave = new TPaveText(0.0,0.0,0.99,0.99);
844	pave->SetBit(kCanDelete);
845	pave->ConvertNDCtoPad();
846	pave->SetTextSize(0.05);
847	pave->AddText(" ");
848	TText *t1 = pave->AddText(Form("Signal smaller 3 Pedestal RMS: %3i pixels",
849	CountBadPixels(&disp24,1)));
850	t1->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol + 1.)));
851	t1->SetTextAlign(12);
852	TText *t2 = pave->AddText(Form("%s%3i%s","Signal Rel. error too large: ",
853	CountBadPixels(&disp24,2)," pixels"));
854	t2->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol + 1.)));
855	t2->SetTextAlign(12);
856	TText *t4 = pave->AddText(Form("Low Gain Saturation: %3i pixels",
857	CountBadPixels(&disp24,3)));
858	t4->SetTextColor(gStyle->GetColorPalette(Int_t(3./max*numcol + 1.)));
859	t4->SetTextAlign(12);
860	TText *t5 = pave->AddText(Form("Mean Arr. Time In First Extraction Bin: %3i pixels",
861	CountBadPixels(&disp24,4)));
862	t5->SetTextColor(gStyle->GetColorPalette(Int_t(4./max*numcol + 1.)));
863	t5->SetTextAlign(12);
864	TText *t6 = pave->AddText(Form("Mean Arr. Time In Last 2 Extraction Bins: %3i pixels",
865	CountBadPixels(&disp24,5)));
866	t6->SetTextColor(gStyle->GetColorPalette(Int_t(5./max*numcol + 1.)));
867	t6->SetTextAlign(12);
868	TText *t9 = pave->AddText(Form("Deviating Number of Photons: %3i pixels",
869	CountBadPixels(&disp24,6)));
870	t9->SetTextColor(gStyle->GetColorPalette(Int_t(6./max*numcol + 1.)));
871	t9->SetTextAlign(12);
872	TText *t10= pave->AddText(Form("High-Gain Histogram Overflow: %3i pixels",
873	CountBadPixels(&disp24,7 )));
874	t10->SetTextColor(gStyle->GetColorPalette(Int_t(7./max*numcol + 1.)));
875	t10->SetTextAlign(12);
876	TText *t11= pave->AddText(Form("Low-Gain Histogram Overflow: %3i pixels",
877	CountBadPixels(&disp24,8 )));
878	t11->SetTextColor(gStyle->GetColorPalette(Int_t(8./max*numcol + 1.)));
879	t11->SetTextAlign(12);
880	TText *t12= pave->AddText(Form("Previously Excluded: %3i pixels",
881	CountBadPixels(&disp24,9)));
882	t12->SetTextColor(gStyle->GetColorPalette(Int_t(9./max*numcol + 1.)));
883	t12->SetTextAlign(12);
884	pave->Draw();
885
886	c4.cd(3);
887	gPad->SetBorderMode(0);
888	obj8->Draw();
889	obj8->SetPrettyPalette();
890
891	//
892	// UNRELIABLE PIXELS
893	//
894
895	c4.cd(2);
896	gPad->SetBorderMode(0);
897	gPad->SetTicks();
898	MHCamera obj9=(MHCamera)disp25.DrawCopy("hist");
899	//
900	// for the datacheck, fix the ranges!!
901	//
902	const Double_t max2 = 8.;
903	obj9->SetMinimum(0.);
904	obj9->SetMaximum(max2);
905	//
906	// Set the datacheck sizes:
907	//
908	FixDataCheckHist((TH1D*)obj9);
909	obj9->SetStats(kFALSE);
910
911	gStyle->SetPalette(1);
912
913	TPaveText *pave2 = new TPaveText(0.0,0.0,0.99,0.99);
914	pave2->SetBit(kCanDelete);
915	pave2->ConvertNDCtoPad();
916	pave2->SetTextSize(0.05);
917	pave2->AddText(" ");
918	TText *t3 = pave2->AddText(Form("Signal Sigma smaller Pedestal RMS: %3i pixels",
919	CountBadPixels(&disp25,1)));
920	t3->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol + 1.)));
921	t3->SetTextAlign(12);
922
923	TText *t7 = pave2->AddText(Form("Deviating Number of Photo-electrons: %3i pixels",
924	CountBadPixels(&disp25,2)));
925	t7->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol + 1.)));
926	t7->SetTextAlign(12);
927
928	TText *tt1 = pave2->AddText(Form("High Gain Signals could not be fitted: %3i pixels",
929	CountBadPixels(&disp25,3)));
930	tt1->SetTextColor(gStyle->GetColorPalette(Int_t(3./max2*numcol + 1.)));
931	tt1->SetTextAlign(12);
932	TText *tt2 = pave2->AddText(Form("Low Gain Signals could not be fitted: %3i pixels",
933	CountBadPixels(&disp25,4)));
934	tt2->SetTextColor(gStyle->GetColorPalette(Int_t(4./max2*numcol + 1.)));
935	tt2->SetTextAlign(12);
936	TText *tt3 = pave2->AddText(Form("Relative Arr. Times could not be fitted: %3i pixels",
937	CountBadPixels(&disp25,5)));
938	tt3->SetTextColor(gStyle->GetColorPalette(Int_t(5./max2*numcol + 1.)));
939	tt3->SetTextAlign(12);
940	TText *tt4 = pave2->AddText(Form("High Gain Signals Oscillation: %3i pixels",
941	CountBadPixels(&disp25,6)));
942	tt4->SetTextColor(gStyle->GetColorPalette(Int_t(6./max2*numcol + 1.)));
943	tt4->SetTextAlign(12);
944	TText *tt5 = pave2->AddText(Form("Low Gain Signals Oscillation: %3i pixels",
945	CountBadPixels(&disp25,7)));
946	tt5->SetTextColor(gStyle->GetColorPalette(Int_t(7./max2*numcol + 1.)));
947	tt5->SetTextAlign(12);
948	TText *tt6 = pave2->AddText(Form("Relative Arr. Times Oscillation: %3i pixels",
949	CountBadPixels(&disp25,8)));
950	tt6->SetTextColor(gStyle->GetColorPalette(Int_t(8./max2*numcol + 1.)));
951	tt6->SetTextAlign(12);
952	TText *tt8 = pave2->AddText(Form("Deviating global F-Factor: %3i pixels",
953	CountBadPixels(&disp25,9)));
954	tt8->SetTextColor(gStyle->GetColorPalette(Int_t(9./max2*numcol + 1.)));
955	tt8->SetTextAlign(12);
956	pave2->Draw();
957
958	c4.cd(4);
959	gPad->SetBorderMode(0);
960	obj9->SetPrettyPalette();
961	obj9->Draw();
962
963	if (IsRelTimes())
964	{
965	TCanvas &c5 = fDisplay->AddTab("RelTimes");
966	c5.Divide(2,3);
967
968	//
969	// MEAN REL. ARR. TIMES
970	//
971	c5.cd(1);
972	gPad->SetBorderMode(0);
973	gPad->SetTicks();
974	MHCamera obj10=(MHCamera)disp30.DrawCopy("hist");
975	//
976	// for the datacheck, fix the ranges!!
977	//
978	// obj10->SetMinimum(fConvFADC2PheMin);
979	// obj10->SetMaximum(fConvFADC2PheMax);
980	//
981	// Set the datacheck sizes:
982	//
983	FixDataCheckHist((TH1D*)obj10);
984	obj10->SetStats(kFALSE);
985	//
986	// set reference lines
987	//
988	// DisplayReferenceLines(obj10,2);
989
990	c5.cd(3);
991	gPad->SetBorderMode(0);
992	obj10->SetPrettyPalette();
993	obj10->Draw();
994
995	c5.cd(5);
996	gPad->SetBorderMode(0);
997	if (geomcam.InheritsFrom("MGeomCamMagic"))
998	DisplayDoubleProject(&disp30, "early", "late");
999
1000	//
1001	// JITTER Rel. Arr. Times
1002	//
1003	c5.cd(2);
1004	gPad->SetBorderMode(0);
1005	gPad->SetTicks();
1006	MHCamera obj11=(MHCamera)disp31.DrawCopy("hist");
1007	//
1008	// for the datacheck, fix the ranges!!
1009	//
1010	// obj11->SetMinimum(fQEMin);
1011	// obj11->SetMaximum(fQEMax);
1012	//
1013	// Set the datacheck sizes:
1014	//
1015	FixDataCheckHist((TH1D*)obj11);
1016	obj11->SetStats(kFALSE);
1017	//
1018	// set reference lines
1019	//
1020	// DisplayReferenceLines(obj11,0);
1021
1022	c5.cd(4);
1023	gPad->SetBorderMode(0);
1024	obj11->SetPrettyPalette();
1025	obj11->Draw();
1026
1027	c5.cd(6);
1028	gPad->SetBorderMode(0);
1029	if (geomcam.InheritsFrom("MGeomCamMagic"))
1030	DisplayDoubleProject(&disp31, "too stable", "jittering");
1031
1032	}
1033	return;
1034	}
1035
1036	if (fDisplayType == kNormalDisplay)
1037	{
1038
1039	// Charges
1040	TCanvas &c11 = fDisplay->AddTab("FitCharge");
1041	c11.Divide(2, 4);
1042
1043	disp1.CamDraw(c11, 1, 2, 5, 1);
1044	disp2.CamDraw(c11, 2, 2, 5, 1);
1045
1046	// Reduced Sigmas
1047	TCanvas &c12 = fDisplay->AddTab("RedSigma");
1048	c12.Divide(2,4);
1049
1050	disp3.CamDraw(c12, 1, 2, 5, 1);
1051	disp4.CamDraw(c12, 2, 2, 5, 1);
1052
1053	// F-Factor
1054	TCanvas &c13 = fDisplay->AddTab("Phe's");
1055	c13.Divide(3,4);
1056
1057	disp5.CamDraw(c13, 1, 3, 5, 1);
1058	disp6.CamDraw(c13, 2, 3, 5, 1);
1059	disp7.CamDraw(c13, 3, 3, 5, 1);
1060
1061	// QE's
1062	TCanvas &c14 = fDisplay->AddTab("QE's");
1063	c14.Divide(4,4);
1064
1065	disp8.CamDraw(c14, 1, 4, 5, 1);
1066	disp9.CamDraw(c14, 2, 4, 5, 1);
1067	disp10.CamDraw(c14, 3, 4, 5, 1);
1068	disp11.CamDraw(c14, 4, 4, 5, 1);
1069
1070	// Defects
1071	TCanvas &c15 = fDisplay->AddTab("Defect");
1072	// c15.Divide(5,2);
1073	c15.Divide(4,2);
1074
1075	/*
1076	disp23.CamDraw(c15, 1, 5, 0);
1077	disp24.CamDraw(c15, 2, 5, 0);
1078	disp25.CamDraw(c15, 3, 5, 0);
1079	disp26.CamDraw(c15, 4, 5, 0);
1080	disp27.CamDraw(c15, 5, 5, 0);
1081	*/
1082	disp24.CamDraw(c15, 1, 4, 0);
1083	disp25.CamDraw(c15, 2, 4, 0);
1084	disp26.CamDraw(c15, 3, 4, 0);
1085	disp27.CamDraw(c15, 4, 4, 0);
1086
1087	// Abs. Times
1088	TCanvas &c16 = fDisplay->AddTab("AbsTimes");
1089	c16.Divide(2,3);
1090
1091	disp28.CamDraw(c16, 1, 2, 5);
1092	disp29.CamDraw(c16, 2, 2, 5);
1093
1094	if (IsRelTimes())
1095	{
1096	// Rel. Times
1097	TCanvas &c17 = fDisplay->AddTab("RelTimes");
1098	c17.Divide(2,4);
1099
1100	disp30.CamDraw(c17, 1, 2, 5, 1);
1101	disp31.CamDraw(c17, 2, 2, 5, 1);
1102	}
1103
1104	return;
1105	}
1106
1107	if (fDisplayType == kFullDisplay)
1108	{
1109	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationChargeCam");
1110
1111	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1112	{
1113	cam->GetAverageHiGainSector(sector).DrawClone("all");
1114	cam->GetAverageLoGainSector(sector).DrawClone("all");
1115	}
1116
1117	// Charges
1118	TCanvas &c21 = fDisplay->AddTab("FitCharge");
1119	c21.Divide(2, 4);
1120
1121	disp1.CamDraw(c21, 1, 2, 2, 1);
1122	disp2.CamDraw(c21, 2, 2, 2, 1);
1123
1124	// Reduced Sigmas
1125	TCanvas &c23 = fDisplay->AddTab("RedSigma");
1126	c23.Divide(2,4);
1127
1128	disp3.CamDraw(c23, 1, 2, 2, 1);
1129	disp4.CamDraw(c23, 2, 2, 2, 1);
1130
1131	// F-Factor
1132	TCanvas &c24 = fDisplay->AddTab("Phe's");
1133	c24.Divide(3,5);
1134
1135	disp5.CamDraw(c24, 1, 3, 2, 1, 1);
1136	disp6.CamDraw(c24, 2, 3, 2, 1, 1);
1137	disp7.CamDraw(c24, 3, 3, 2, 1, 1);
1138
1139	// QE's
1140	TCanvas &c25 = fDisplay->AddTab("QE's");
1141	c25.Divide(4,5);
1142
1143	disp8.CamDraw(c25, 1, 4, 2, 1, 1);
1144	disp9.CamDraw(c25, 2, 4, 2, 1, 1);
1145	disp10.CamDraw(c25, 3, 4, 2, 1, 1);
1146	disp11.CamDraw(c25, 4, 4, 2, 1, 1);
1147
1148	// Validity
1149	TCanvas &c26 = fDisplay->AddTab("Valid");
1150	c26.Divide(4,2);
1151
1152	disp12.CamDraw(c26, 1, 4, 0);
1153	disp13.CamDraw(c26, 2, 4, 0);
1154	disp14.CamDraw(c26, 3, 4, 0);
1155	disp15.CamDraw(c26, 4, 4, 0);
1156
1157	// Other info
1158	TCanvas &c27 = fDisplay->AddTab("HiLoGain");
1159	c27.Divide(3,3);
1160
1161	disp16.CamDraw(c27, 1, 3, 0);
1162	disp17.CamDraw(c27, 2, 3, 1);
1163	disp18.CamDraw(c27, 3, 3, 1);
1164
1165	// Pickup
1166	TCanvas &c28 = fDisplay->AddTab("Pickup");
1167	c28.Divide(4,2);
1168
1169	disp19.CamDraw(c28, 1, 4, 0);
1170	disp20.CamDraw(c28, 2, 4, 0);
1171	disp21.CamDraw(c28, 3, 4, 0);
1172	disp22.CamDraw(c28, 4, 4, 0);
1173
1174	// Defects
1175	TCanvas &c29 = fDisplay->AddTab("Defect");
1176	// c29.Divide(5,2);
1177	c29.Divide(4,2);
1178
1179	disp24.CamDraw(c29, 1, 4, 0);
1180	disp25.CamDraw(c29, 2, 4, 0);
1181	disp26.CamDraw(c29, 3, 4, 0);
1182	disp27.CamDraw(c29, 4, 4, 0);
1183
1184	// Abs. Times
1185	TCanvas &c30 = fDisplay->AddTab("AbsTimes");
1186	c30.Divide(2,3);
1187
1188	disp28.CamDraw(c30, 1, 2, 2);
1189	disp29.CamDraw(c30, 2, 2, 1);
1190
1191	if (IsRelTimes())
1192	{
1193	// Rel. Times
1194	TCanvas &c31 = fDisplay->AddTab("RelTimes");
1195	c31.Divide(3,5);
1196
1197	disp30.CamDraw(c31, 1, 3, 2, 1, 1);
1198	disp31.CamDraw(c31, 2, 3, 2, 1, 1);
1199	disp32.CamDraw(c31, 3, 3, 4, 1, 1);
1200
1201	// Time Defects
1202	TCanvas &c32 = fDisplay->AddTab("DefTime");
1203	c32.Divide(2,2);
1204
1205	disp33.CamDraw(c32, 1, 2, 0);
1206	disp34.CamDraw(c32, 2, 2, 0);
1207
1208	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationRelTimeCam");
1209
1210	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1211	{
1212	cam->GetAverageHiGainSector(sector).DrawClone("fourierevents");
1213	cam->GetAverageLoGainSector(sector).DrawClone("fourierevents");
1214	}
1215
1216	}
1217
1218	return;
1219	}
1220	}
1221
1222
1223	void MJCalibration::DisplayReferenceLines(MHCamera *cam, const Int_t what) const
1224	{
1225
1226	const MGeomCam *geom = cam->GetGeometry();
1227
1228	Double_t x = geom->InheritsFrom("MGeomCamMagic") ? 397 : cam->GetNbinsX() ;
1229
1230	TLine line;
1231	line.SetLineStyle(kDashed);
1232	line.SetLineWidth(3);
1233	line.SetLineColor(kBlue);
1234
1235	TLine *l1 = NULL;
1236
1237	if (what == 0)
1238	l1 = line.DrawLine(0, fRefQEInner, x, fRefQEInner);
1239	else if (what == 1)
1240	l1 = line.DrawLine(0, fRefConvFADC2PhotInner, x, fRefConvFADC2PhotInner);
1241	else if (what == 2)
1242	l1 = line.DrawLine(0, fRefConvFADC2PheInner, x, fRefConvFADC2PheInner );
1243	else if (what == 3)
1244	l1 = line.DrawLine(0, fRefArrivalTimeInner, x, fRefArrivalTimeInner );
1245	else if (what == 4)
1246	l1 = line.DrawLine(0, fRefArrivalTimeRmsInner, x, fRefArrivalTimeRmsInner );
1247
1248	if (geom->InheritsFrom("MGeomCamMagic"))
1249	{
1250	const Double_t x2 = cam->GetNbinsX();
1251
1252	switch (what)
1253	{
1254	case 0:
1255	line.DrawLine(x2, fRefQEOuter, 398, fRefQEOuter);
1256	break;
1257	case 1:
1258	line.DrawLine(x2, fRefConvFADC2PhotOuter, 398, fRefConvFADC2PhotOuter );
1259	break;
1260	case 2:
1261	line.DrawLine(x2, fRefConvFADC2PheOuter, 398, fRefConvFADC2PheOuter);
1262	break;
1263	case 3:
1264	line.DrawLine(x2, fRefArrivalTimeOuter, 398, fRefArrivalTimeOuter);
1265	break;
1266	case 4:
1267	line.DrawLine(x2, fRefArrivalTimeRmsOuter, 398, fRefArrivalTimeRmsOuter);
1268	break;
1269	}
1270	}
1271
1272	TLegend *leg = new TLegend(what ? 0.2 : 0.6,0.75,what ? 0.5 : 0.9 ,0.85);
1273	leg->SetBit(kCanDelete);
1274	leg->AddEntry(l1, "Reference","l");
1275	leg->Draw();
1276	}
1277
1278	void MJCalibration::DisplayOutliers(TH1D hist, const char whatsmall, const char* whatbig) const
1279	{
1280
1281	const Int_t kNotDraw = 1<<9;
1282	TF1 *f = hist->GetFunction("gaus");
1283	f->ResetBit(kNotDraw);
1284
1285	const Float_t mean = f->GetParameter(1);
1286	const Float_t lolim = mean - 4.0*f->GetParameter(2);
1287	const Float_t uplim = mean + 4.0*f->GetParameter(2);
1288	const Stat_t dead = hist->Integral(0,hist->FindBin(lolim)-1);
1289	const Stat_t noisy = hist->Integral(hist->FindBin(uplim)+1,hist->GetNbinsX()+1);
1290
1291	const Double_t max = hist->GetBinContent(hist->GetMaximumBin());
1292
1293	const Double_t minl = hist->GetBinCenter(hist->GetXaxis()->GetFirst());
1294	const Double_t maxl = hist->GetBinCenter(hist->GetXaxis()->GetLast());
1295
1296	TLatex deadtex;
1297	deadtex.SetTextSize(0.07);
1298	deadtex.DrawLatex(minl+0.015*(maxl-minl),max/1.1,
1299	Form("%3i %s pixels",(Int_t)dead,whatsmall));
1300
1301	TLatex noisytex;
1302	noisytex.SetTextSize(0.07);
1303	noisytex.DrawLatex(minl+0.015*(maxl-minl),max/1.2,
1304	Form("%3i %s pixels",(Int_t)noisy,whatbig));
1305
1306	}
1307
1308	void MJCalibration::FixDataCheckHist(TH1D *hist) const
1309	{
1310
1311	hist->SetDirectory(NULL);
1312
1313	//
1314	// set the labels bigger
1315	//
1316	TAxis *xaxe = hist->GetXaxis();
1317	TAxis *yaxe = hist->GetYaxis();
1318
1319	xaxe->CenterTitle();
1320	yaxe->CenterTitle();
1321	xaxe->SetTitleSize(0.06);
1322	yaxe->SetTitleSize(0.06);
1323	xaxe->SetTitleOffset(0.8);
1324	yaxe->SetTitleOffset(0.85);
1325	xaxe->SetLabelSize(0.05);
1326	yaxe->SetLabelSize(0.05);
1327
1328	}
1329
1330	const Int_t MJCalibration::CountBadPixels ( MHCamera *cam , const Int_t what ) const
1331	{
1332
1333	Int_t cnt = 0;
1334
1335	for (UInt_t pix=0; pix<cam->GetNumPixels();pix++)
1336	if ((Int_t)cam->GetPixContent(pix) == what)
1337	cnt++;
1338
1339	return cnt;
1340	}
1341
1342	// --------------------------------------------------------------------------
1343	//
1344	// Retrieve the output file written by WriteResult()
1345	//
1346	const char* MJCalibration::GetOutputFile() const
1347	{
1348	const TString name(GetOutputFileName());
1349	if (name.IsNull())
1350	return "";
1351
1352	return Form("%s/%s", fPathOut.Data(), name.Data());
1353	}
1354
1355	const char* MJCalibration::GetOutputFileName() const
1356	{
1357	if (fSequence.IsValid())
1358	return Form("calib%08d.root", fSequence.GetSequence());
1359	if (!fRuns)
1360	return "";
1361
1362	return Form("%s-F1.root", (const char*)fRuns->GetRunsAsFileName());
1363	}
1364
1365	// --------------------------------------------------------------------------
1366	//
1367	// MJCalibration allows to setup several option by a resource file:
1368	// MJCalibration.Display: full, datacheck, normal
1369	// MJCalibration.RelTimeCalibration: yes,no
1370	// MJCalibration.DataCheck: yes,no
1371	// MJCalibration.Debug: yes,no
1372	// MJCalibration.Intensity: yes,no
1373	// MJCalibration.UseBlindPixel: yes,no
1374	// MJCalibration.UsePINDiode: yes,no
1375	// MJCalibration.Geometry: MGeomCamMagic, MGeomCamECO1000
1376	//
1377	// For more details see the class description and the corresponding Getters
1378	//
1379	Bool_t MJCalibration::CheckEnvLocal()
1380	{
1381	TString dis = GetEnv("Display", "");
1382	if (dis.BeginsWith("Full", TString::kIgnoreCase))
1383	SetFullDisplay();
1384	if (dis.BeginsWith("DataCheck", TString::kIgnoreCase))
1385	SetDataCheckDisplay();
1386	if (dis.BeginsWith("Normal", TString::kIgnoreCase))
1387	SetNormalDisplay();
1388
1389	SetRelTimeCalibration(GetEnv("RelTimeCalibration", IsRelTimes()));
1390	SetIntensity(GetEnv("IntensityCalibration", IsIntensity()));
1391	SetDataCheck(GetEnv("DataCheck", IsDataCheck()));
1392	SetDebug(GetEnv("Debug", IsDebug()));
1393
1394	SetUseBlindPixel(GetEnv("UseBlindPixel", IsUseBlindPixel()));
1395	SetUsePINDiode(GetEnv("UsePINDiode", IsUsePINDiode()));
1396	SetGeometry(GetEnv("Geometry", fGeometry));
1397
1398	fReferenceFile = GetEnv("ReferenceFile",fReferenceFile.Data());
1399
1400	TEnv refenv(fReferenceFile);
1401
1402	fConvFADC2PheMin = refenv.GetValue("ConvFADC2PheMin",fConvFADC2PheMin);
1403	fConvFADC2PheMax = refenv.GetValue("ConvFADC2PheMax",fConvFADC2PheMax);
1404	fConvFADC2PhotMin = refenv.GetValue("ConvFADC2PhotMin",fConvFADC2PhotMin);
1405	fConvFADC2PhotMax = refenv.GetValue("ConvFADC2PhotMax",fConvFADC2PhotMax);
1406	fQEMin = refenv.GetValue("QEMin",fQEMin);
1407	fQEMax = refenv.GetValue("QEMax",fQEMax);
1408	fArrivalTimeMin = refenv.GetValue("ArrivalTimeMin",fArrivalTimeMin);
1409	fArrivalTimeMax = refenv.GetValue("ArrivalTimeMax",fArrivalTimeMax);
1410
1411	fRefConvFADC2PheInner = refenv.GetValue("RefConvFADC2PheInner",fRefConvFADC2PheInner);
1412	fRefConvFADC2PheOuter = refenv.GetValue("RefConvFADC2PheOuter",fRefConvFADC2PheOuter);
1413	fRefConvFADC2PhotInner = refenv.GetValue("RefConvFADC2PhotInner",fRefConvFADC2PhotInner);
1414	fRefConvFADC2PhotOuter = refenv.GetValue("RefConvFADC2PhotOuter",fRefConvFADC2PhotOuter);
1415	fRefQEInner = refenv.GetValue("RefQEInner",fRefQEInner);
1416	fRefQEOuter = refenv.GetValue("RefQEOuter",fRefQEOuter);
1417	fRefArrivalTimeInner = refenv.GetValue("RefArrivalTimeInner",fRefArrivalTimeInner);
1418	fRefArrivalTimeOuter = refenv.GetValue("RefArrivalTimeOuter",fRefArrivalTimeOuter);
1419	fRefArrivalTimeRmsInner = refenv.GetValue("RefArrivalTimeRmsInner",fRefArrivalTimeRmsInner);
1420	fRefArrivalTimeRmsOuter = refenv.GetValue("RefArrivalTimeRmsOuter",fRefArrivalTimeRmsOuter);
1421
1422	return kTRUE;
1423	}
1424
1425	// --------------------------------------------------------------------------
1426	//
1427	// Call the ProcessFile(MPedestalCam)
1428	//
1429	Bool_t MJCalibration::Process(MPedestalCam &pedcam)
1430	{
1431	if (!ReadCalibrationCam())
1432	return ProcessFile(pedcam);
1433
1434	return kTRUE;
1435	}
1436
1437	void MJCalibration::InitBlindPixel(MExtractBlindPixel &blindext,
1438	MHCalibrationChargeBlindCam &blindcam)
1439	{
1440
1441	Int_t run = fSequence.IsValid() ? fSequence.GetLastRun() : fRuns->GetRuns()[fRuns->GetNumRuns()-1];
1442
1443	//
1444	// Initialize the blind pixel. Unfortunately, there is a hardware difference
1445	// in the first blind pixel until run "gkSecondBlindPixelInstallation" and the
1446	// later setup. The first needs to use a filter because of the length of
1447	// spurious NSB photon signals. The latter get better along extracting the amplitude
1448	// from a small window.
1449	//
1450	if (run < gkSecondBlindPixelInstallation)
1451	{
1452	MCalibrationBlindCamOneOldStyle blindresults;
1453	if (IsIntensity())
1454	blindresults.Copy(*fIntensBlindCam.GetCam());
1455	else
1456	blindresults.Copy(fCalibrationBlindCam);
1457
1458	blindext.SetExtractionType(MExtractBlindPixel::kIntegral);
1459	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1460	blindext.SetRange(10,19,0,6);
1461	blindext.SetNSBFilterLimit(70);
1462	}
1463	else if (run < gkThirdBlindPixelInstallation)
1464	{
1465
1466	MCalibrationBlindCamTwoNewStyle blindresults;
1467
1468	if (IsIntensity())
1469	blindresults.Copy(*fIntensBlindCam.GetCam());
1470	else
1471	blindresults.Copy(fCalibrationBlindCam);
1472
1473	blindext.SetNumBlindPixels(blindresults.GetSize());
1474	for (Int_t i=0;i<blindresults.GetSize();i++)
1475	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1476
1477	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1478	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1479	blindext.SetRange(5,8,0,2);
1480	blindext.SetNSBFilterLimit(38);
1481
1482	}
1483	else
1484	{
1485
1486	MCalibrationBlindCamThreeNewStyle blindresults;
1487
1488	if (IsIntensity())
1489	blindresults.Copy(*fIntensBlindCam.GetCam());
1490	else
1491	blindresults.Copy(fCalibrationBlindCam);
1492
1493	blindext.SetNumBlindPixels(blindresults.GetSize());
1494
1495	for (Int_t i=0;i<blindresults.GetSize();i++)
1496	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1497
1498	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1499	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1500	blindext.SetDataType(MExtractBlindPixel::kRawEvt2);
1501	blindext.SetRange(5,8,0,2);
1502	blindext.SetNSBFilterLimit(38);
1503
1504	}
1505
1506	}
1507
1508	// --------------------------------------------------------------------------
1509	//
1510	// Execute the task list and the eventloop:
1511	//
1512	// - Check if there are fRuns, otherwise return
1513	// - Check the colour of the files in fRuns (FindColor()), otherwise return
1514	// - Check for consistency between run numbers and number of files
1515	// - Add fRuns to MReadMarsFile
1516	// - Put into MParList:
1517	// 1) MPedestalCam (pedcam)
1518	// 2) MCalibrationQECam (fQECam)
1519	// 3) MCalibrationChargeCam (fCalibrationCam)
1520	// 4) MCalibrationRelTimeCam (fRelTimeCam) (only if flag IsRelTimes() is chosen)
1521	// 5) MBadPixelsCam (fBadPixels)
1522	// 6) MCalibrationChargePINDiode
1523	// 7) MCalibrationBlindPix
1524	// - Put into the MTaskList:
1525	// 1) MReadMarsFile
1526	// 2) MBadPixelsMerge
1527	// 3) MGeomApply
1528	// 4) MExtractor
1529	// 5) MExtractPINDiode
1530	// 6) MExtractBlindPixel
1531	// 7) MExtractTime (only if flag IsRelTimes() is chosen)
1532	// 8) MContinue(MFCosmics)
1533	// 9) MFillH("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode")
1534	// 10) MFillH("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam")
1535	// 11) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam")
1536	// 12) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillRelTime")
1537	// 13) MCalibrationChargeCalc
1538	// 14) MFillH("MHCalibrationRelTimeCam", "MArrivalTimeCam") (only if flag IsRelTimes() is chosen)
1539	// 15) MCalibrationRelTimeCalc
1540	// - Execute MEvtLoop
1541	// - DisplayResult()
1542	// - WriteResult()
1543	//
1544	Bool_t MJCalibration::ProcessFile(MPedestalCam &pedcam)
1545	{
1546	if (!fSequence.IsValid())
1547	{
1548	if (!fRuns)
1549	{
1550	*fLog << err << "No Runs choosen... abort." << endl;
1551	return kFALSE;
1552	}
1553
1554	if (fRuns->GetNumRuns() != fRuns->GetNumEntries())
1555	{
1556	*fLog << err << "Number of files found doesn't match number of runs... abort."
1557	<< fRuns->GetNumRuns() << " vs. " << fRuns->GetNumEntries() << endl;
1558	return kFALSE;
1559	}
1560	}
1561
1562	//if (!CheckEnv())
1563	// return kFALSE;
1564
1565	CheckEnv();
1566
1567	// --------------------------------------------------------------------------------
1568
1569	*fLog << inf;
1570	fLog->Separator(GetDescriptor());
1571
1572	*fLog << "Calculate MCalibrationCam from ";
1573	if (fSequence.IsValid())
1574	*fLog << "Sequence #" << fSequence.GetSequence() << endl;
1575	else
1576	*fLog << "Runs " << fRuns->GetRunsAsString() << endl;
1577	*fLog << endl;
1578
1579	// --------------------------------------------------------------------------------
1580
1581	// Setup Tasklist
1582	MParList plist;
1583	MTaskList tlist;
1584	plist.AddToList(&tlist);
1585	plist.AddToList(this); // take care of fDisplay!
1586
1587	MDirIter iter;
1588	if (fSequence.IsValid())
1589	{
1590	const Int_t n0 = fSequence.SetupCalRuns(iter, fPathData, "C", IsDataCheck());
1591	const Int_t n1 = fSequence.GetNumCalRuns();
1592	if (n0==0)
1593	{
1594	*fLog << err << "ERROR - No input files of sequence found!" << endl;
1595	return kFALSE;
1596	}
1597	if (n0!=n1)
1598	{
1599	*fLog << err << "ERROR - Number of files found ("
1600	<< n0 << ") doesn't match number of files in sequence ("
1601	<< n1 << ")" << endl;
1602	return kFALSE;
1603	}
1604	}
1605
1606	//
1607	// Input containers
1608	//
1609	pedcam.SetName("MPedestalCam"); // MPedestalFundamental
1610	plist.AddToList(&pedcam);
1611	plist.AddToList(&fBadPixels);
1612
1613	//
1614	// Calibration Results containers
1615	//
1616	if (IsIntensity())
1617	{
1618	plist.AddToList(&fIntensQECam);
1619	plist.AddToList(&fIntensCalibCam);
1620	plist.AddToList(&fIntensBlindCam);
1621	// plist.AddToList(&fIntensCalibrationPINDiode);
1622	plist.AddToList(&fIntensRelTimeCam);
1623	plist.AddToList(&fIntensBadCam);
1624	}
1625	else
1626	{
1627	plist.AddToList(&fQECam);
1628	plist.AddToList(&fCalibrationCam);
1629	plist.AddToList(&fCalibrationBlindCam);
1630	plist.AddToList(&fCalibrationPINDiode);
1631	plist.AddToList(&fRelTimeCam);
1632	}
1633
1634	//
1635	// Initialize two histogram containers which could be modified in this class
1636	//
1637	MHCalibrationRelTimeCam reltimecam;
1638	MHCalibrationChargeCam chargecam;
1639	MHCalibrationChargeBlindCam blindcam;
1640	plist.AddToList(&chargecam);
1641	plist.AddToList(&blindcam);
1642	if (IsRelTimes())
1643	plist.AddToList(&reltimecam);
1644	//
1645	// Data Reading tasks
1646	//
1647	MReadMarsFile read("Events");
1648	MRawFileRead rawread(NULL);
1649
1650	if (IsDataCheck())
1651	{
1652	rawread.AddFiles(fSequence.IsValid() ? iter : *fRuns);
1653	tlist.AddToList(&rawread);
1654	}
1655	else
1656	{
1657	read.DisableAutoScheme();
1658	read.AddFiles(fSequence.IsValid() ? iter : *fRuns);
1659	tlist.AddToList(&read);
1660	}
1661
1662	//
1663	// Other Tasks
1664	//
1665	MCalibrationPatternDecode decode;
1666	MGeomApply apply;
1667	apply.SetGeometry(fGeometry);
1668	MBadPixelsMerge merge(&fBadPixels);
1669	MExtractPINDiode pinext;
1670	MExtractBlindPixel blindext;
1671
1672	InitBlindPixel(blindext, blindcam);
1673
1674	MExtractSlidingWindow extract2;
1675	MExtractTimeFastSpline timespline;
1676	MCalibrationChargeCalc calcalc;
1677	MCalibrationRelTimeCalc timecalc;
1678	calcalc.SetOutputFile("");
1679	timecalc.SetOutputFile("");
1680
1681	if (!fSequence.IsValid())
1682	{
1683	calcalc.SetOutputPath(fPathOut);
1684	calcalc.SetOutputFile(Form("%s-ChargeCalibStat.txt",(const char*)fRuns->GetRunsAsFileName()));
1685	timecalc.SetOutputPath(fPathOut);
1686	timecalc.SetOutputFile(Form("%s-ChargeCalibStat.txt",(const char*)fRuns->GetRunsAsFileName()));
1687	}
1688
1689	if (IsDebug())
1690	{
1691	chargecam.SetDebug();
1692	calcalc.SetDebug();
1693	}
1694
1695	//
1696	// Calibration histogramming
1697	//
1698	MFillH fillpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
1699	MFillH fillbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
1700	MFillH fillcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
1701	MFillH filltme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
1702	fillpin.SetBit(MFillH::kDoNotDisplay);
1703	fillbnd.SetBit(MFillH::kDoNotDisplay);
1704	fillcam.SetBit(MFillH::kDoNotDisplay);
1705	filltme.SetBit(MFillH::kDoNotDisplay);
1706
1707	//
1708	// Set default extractors in case, none has been set...
1709	//
1710	if (!fExtractor)
1711	fExtractor = &extract2;
1712	if (!fTimeExtractor)
1713	fTimeExtractor = &timespline;
1714
1715	//
1716	// Look if the extractor is a pure charge or also a time extractor
1717	//
1718	if (fExtractor->InheritsFrom("MExtractTimeAndCharge"))
1719	{
1720	if (fExtractorCam.GetSize() == pedcam.GetSize())
1721	calcalc.SetPedestals(&fExtractorCam);
1722	else
1723	{
1724	*fLog << err << GetDescriptor() << "ERROR - ";
1725	*fLog << "Used Extractor derives from MExtractTimeAndCharge, " << endl;
1726	*fLog << "but MExtractorCam size " << fExtractorCam.GetSize() << " ";
1727	*fLog << "mismatch pedcam size " << pedcam.GetSize() << "! " << endl;
1728	return kFALSE;
1729	}
1730	}
1731
1732	//
1733	// Setup more tasks and tasklist
1734	//
1735	MTaskEnv taskenv("ExtractSignal");
1736	taskenv.SetDefault(fExtractor);
1737
1738	tlist.AddToList(&decode);
1739	tlist.AddToList(&merge);
1740	tlist.AddToList(&apply);
1741
1742	MPedCalcPedRun pedcalc;
1743	pedcalc.SetExtractWindow(fExtractor->GetHiGainFirst(),TMath::Nint(fExtractor->GetNumHiGainSamples()));
1744
1745	if (IsIntensity())
1746	tlist.AddToList(&pedcalc);
1747
1748	MCalibColorSet colorset;
1749	tlist.AddToList(&colorset);
1750
1751	tlist.AddToList(&taskenv);
1752	tlist.AddToList(&pinext);
1753	tlist.AddToList(&blindext);
1754
1755	MTaskEnv taskenv2("ExtractTime");
1756	if (!fExtractor->InheritsFrom("MExtractTimeAndCharge"))
1757	{
1758	taskenv2.SetDefault(fTimeExtractor);
1759
1760	if (IsRelTimes())
1761	tlist.AddToList(&taskenv2);
1762	}
1763
1764	//
1765	// Apply a filter against cosmics
1766	// (will have to be needed in the future
1767	// when the calibration hardware-trigger is working)
1768	//
1769	MFCosmics cosmics;
1770	MContinue cont(&cosmics);
1771
1772	if (fColor == MCalibrationCam::kCT1)
1773	tlist.AddToList(&cont);
1774
1775	MCalibColorSteer steer;
1776	if (IsIntensity())
1777	tlist.AddToList(&steer);
1778
1779	tlist.AddToList(&fillcam);
1780
1781	if (IsRelTimes())
1782	{
1783	tlist.AddToList(&filltme);
1784	tlist.AddToList(&timecalc);
1785	}
1786
1787	if (IsUseBlindPixel())
1788	tlist.AddToList(&fillbnd);
1789	if (IsUsePINDiode())
1790	tlist.AddToList(&fillpin);
1791
1792	tlist.AddToList(&calcalc);
1793
1794	// Create and setup the eventloop
1795	MEvtLoop evtloop(fName);
1796	evtloop.SetParList(&plist);
1797	evtloop.SetDisplay(fDisplay);
1798	evtloop.SetLogStream(fLog);
1799	if (!SetupEnv(evtloop))
1800	return kFALSE;
1801
1802	if (!taskenv.GetTask() && !taskenv2.GetTask())
1803	{
1804	*fLog << err << "ERROR - Neither ExtractSignal nor ExtractTime initialized or both '<dummy>'." << endl;
1805	return kFALSE;
1806	}
1807
1808	if (!WriteTasks(taskenv.GetTask(), IsRelTimes() ? taskenv2.GetTask() : 0))
1809	return kFALSE;
1810
1811	// Execute first analysis
1812	if (!evtloop.Eventloop())
1813	{
1814	*fLog << err << GetDescriptor() << ": Failed." << endl;
1815	return kFALSE;
1816	}
1817
1818	tlist.PrintStatistics();
1819
1820	if (!fCalibrationPINDiode.IsValid())
1821	SetUsePINDiode(kFALSE);
1822
1823	DisplayResult(plist);
1824
1825	if (!WriteResult(plist))
1826	return kFALSE;
1827
1828	*fLog << all << GetDescriptor() << ": Done." << endl;
1829
1830	return kTRUE;
1831	}
1832
1833	// --------------------------------------------------------------------------
1834	//
1835	// Read the following containers from GetOutputFile()
1836	// - MCalibrationChargeCam
1837	// - MCalibrationQECam
1838	// - MBadPixelsCam
1839	//
1840	Bool_t MJCalibration::ReadCalibrationCam()
1841	{
1842
1843	if (IsNoStorage())
1844	return kFALSE;
1845
1846	const TString fname = GetOutputFile();
1847
1848	if (gSystem->AccessPathName(fname, kFileExists))
1849	{
1850	*fLog << err << "Input file " << fname << " doesn't exist." << endl;
1851	return kFALSE;
1852	}
1853
1854	*fLog << inf << "Reading from file: " << fname << endl;
1855
1856	TFile file(fname, "READ");
1857	if (fCalibrationCam.Read()<=0)
1858	{
1859	*fLog << err << "Unable to read MCalibrationChargeCam from " << fname << endl;
1860	return kFALSE;
1861	}
1862
1863	if (fQECam.Read()<=0)
1864	{
1865	*fLog << err << "Unable to read MCalibrationQECam from " << fname << endl;
1866	return kFALSE;
1867	}
1868
1869
1870	if (file.FindKey("MCalibrationRelTimeCam"))
1871	if (fRelTimeCam.Read()<=0)
1872	{
1873	*fLog << err << "Unable to read MCalibrationRelTimeCam from " << fname << endl;
1874	return kFALSE;
1875	}
1876
1877	if (file.FindKey("MBadPixelsCam"))
1878	{
1879	MBadPixelsCam bad;
1880	if (bad.Read()<=0)
1881	{
1882	*fLog << err << "Unable to read MBadPixelsCam from " << fname << endl;
1883	return kFALSE;
1884	}
1885	fBadPixels.Merge(bad);
1886	}
1887
1888	if (fDisplay /&& !fDisplay->GetCanvas("Pedestals")/) // FIXME!
1889	fDisplay->Read();
1890
1891	return kTRUE;
1892	}
1893
1894
1895	// --------------------------------------------------------------------------
1896	//
1897	// Set the useage of the Blind Pixel device
1898	//
1899	void MJCalibration::SetUseBlindPixel(const Bool_t b)
1900	{
1901	b ? SETBIT(fDevices,kUseBlindPixel) : CLRBIT(fDevices,kUseBlindPixel);
1902	}
1903
1904	// --------------------------------------------------------------------------
1905	//
1906	// Set the useage of the PIN Diode device
1907	//
1908	void MJCalibration::SetUsePINDiode(const Bool_t b)
1909	{
1910	b ? SETBIT(fDevices,kUsePINDiode) : CLRBIT(fDevices,kUsePINDiode);
1911	}
1912
1913	/*
1914	Bool_t MJCalibration::WriteEventloop(MEvtLoop &evtloop) const
1915	{
1916	if (IsNoStorage())
1917	return kTRUE;
1918
1919	if (fPathOut.IsNull())
1920	return kTRUE;
1921
1922	const TString oname(GetOutputFile());
1923
1924	*fLog << inf << "Writing to file: " << oname << endl;
1925
1926	TFile file(oname, fOverwrite?"RECREATE":"NEW", "File created by MJCalibration", 9);
1927	if (!file.IsOpen())
1928	{
1929	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
1930	return kFALSE;
1931	}
1932
1933	if (evtloop.Write(fName)<=0)
1934	{
1935	*fLog << err << "Unable to write MEvtloop to " << oname << endl;
1936	return kFALSE;
1937	}
1938
1939	return kTRUE;
1940	}
1941	*/
1942
1943	Bool_t MJCalibration::WriteTasks(MTask t1, MTask t2) const
1944	{
1945	if (IsNoStorage())
1946	return kTRUE;
1947
1948	TObjArray cont;
1949	if (t1)
1950	cont.Add(t1);
1951	if (t2)
1952	cont.Add(t2);
1953
1954	return WriteContainer(cont, GetOutputFileName(), fOverwrite?"RECREATE":"NEW");
1955	}
1956
1957	// --------------------------------------------------------------------------
1958	//
1959	// Write the result into the output file GetOutputFile(), if fOutputPath exists.
1960	//
1961	// The following containers are written:
1962	// - MStatusDisplay
1963	// - MCalibrationChargeCam or MCalibrationIntensityChargeCam
1964	// - MCalibrationBlindCam or MCalibrationIntensityBlindCam
1965	// - MCalibrationQECam or MCalibrationIntensityQECam
1966	// - MCalibrationChargePINDiode
1967	// - MBadPixelsCam
1968	// If the flag kRelTimes is set, then also:
1969	// - MCalibrationRelTimeCam or MCalibrationIntensityRelTimeCam
1970	//
1971	Bool_t MJCalibration::WriteResult(MParList &plist)
1972	{
1973	TObjArray cont;
1974
1975	if (!IsNoStorage())
1976	{
1977	if (IsIntensity())
1978	{
1979	cont.Add(&fIntensBadCam);
1980	cont.Add(&fIntensCalibCam);
1981	cont.Add(&fIntensQECam);
1982	cont.Add(&fIntensBlindCam);
1983	}
1984	else
1985	{
1986	cont.Add(&fBadPixels);
1987	cont.Add(&fCalibrationCam);
1988	cont.Add(&fQECam);
1989	cont.Add(&fCalibrationBlindCam);
1990	}
1991	cont.Add(&fCalibrationPINDiode);
1992
1993	//if (IsRelTimes())
1994	cont.Add(IsIntensity() ? (TObject)&fIntensRelTimeCam : (TObject)&fRelTimeCam);
1995
1996	TObject *geom = plist.FindObject("MGeomCam");
1997	if (!geom)
1998	*fLog << warn << " - WARNING - MGeomCam... not found for writing!" << endl;
1999	else
2000	cont.Add(geom);
2001	}
2002
2003	if (IsHistsStorage())
2004	{
2005	cont.Add(plist.FindObject("MHCalibrationChargeCam"));
2006	cont.Add(plist.FindObject("MHCalibrationChargeBlindCam"));
2007	cont.Add(plist.FindObject("MHCalibrationChargePINDiode"));
2008	if (IsRelTimes())
2009	cont.Add(plist.FindObject("MHCalibrationRelTimeCam"));
2010	}
2011
2012	return WriteContainer(cont, GetOutputFileName(), "UPDATE");
2013	}
2014
2015	void MJCalibration::DisplayDoubleProject(MHCamera cam, const char whatsmall, const char* whatbig) const
2016	{
2017
2018	TArrayI inner(1);
2019	inner[0] = 0;
2020
2021	TArrayI outer(1);
2022	outer[0] = 1;
2023
2024	TArrayI s1(3);
2025	s1[0] = 6;
2026	s1[1] = 1;
2027	s1[2] = 2;
2028
2029	TArrayI s2(3);
2030	s2[0] = 3;
2031	s2[1] = 4;
2032	s2[2] = 5;
2033
2034	TVirtualPad *pad = gPad;
2035	pad->Divide(2,1);
2036
2037	TH1D *inout[2];
2038
2039	for (int i=0; i<2; i++)
2040	{
2041	pad->cd(i+1);
2042	gPad->SetBorderMode(0);
2043	gPad->SetTicks();
2044
2045	inout[i] = cam->ProjectionS(TArrayI(), TArrayI(1,&i), i==0 ? "Inner" : "Outer");
2046	FixDataCheckHist(inout[i]);
2047	inout[i]->SetTitle(Form("%s %s",cam->GetTitle(),i==0 ? "Inner" : "Outer"));
2048	inout[i]->SetDirectory(NULL);
2049	inout[i]->SetLineColor(kRed+i);
2050	inout[i]->SetBit(kCanDelete);
2051	inout[i]->Draw();
2052	//
2053	// Display the outliers as dead and noisy pixels
2054	//
2055	if (!inout[i]->Fit("gaus","0Q"))
2056	DisplayOutliers(inout[i],whatsmall,whatbig);
2057
2058	gPad->Modified();
2059	gPad->Update();
2060	TPaveStats st = (TPaveStats)inout[i]->GetListOfFunctions()->FindObject("stats");
2061	st->SetY1NDC(0.6);
2062	st->SetY2NDC(0.9);
2063	st->SetX1NDC(0.55);
2064	st->SetX2NDC(0.99);
2065	gPad->Modified();
2066	gPad->Update();
2067
2068	TLegend *leg2 = new TLegend(0.55,0.4,0.99,0.6);
2069
2070	//
2071	// Display the two half of the camera separately
2072	//
2073	TH1D *half[2];
2074	half[0] = cam->ProjectionS(s1, TArrayI(1,&i), "Sector 6-1-2");
2075	half[1] = cam->ProjectionS(s2, TArrayI(1,&i), "Sector 3-4-5");
2076
2077	for (int j=0; j<2; j++)
2078	{
2079	half[j]->SetLineColor(kRed+i+2*j+1);
2080	half[j]->SetDirectory(NULL);
2081	half[j]->SetBit(kCanDelete);
2082	half[j]->Draw("same");
2083	leg2->AddEntry(half[j], half[j]->GetName(), "l");
2084	}
2085	leg2->Draw();
2086	}
2087	}

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