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Last change on this file since 6634 was 6563, checked in by gaug, 20 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	! Author(s): Markus Gaug, 02/2004 <mailto:markus@ifae.es>
20	!
21	! Copyright: MAGIC Software Development, 2000-2004
22	!
23	!
24	\* ======================================================================== */
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibration
28	//
29	// Do one calibration loop over serious of runs with the same pulser
30	// colour and the same intensity. The following containers (rectangular) and
31	// tasks (ellipses) are called to produce an MCalibrationChargeCam and to
32	// update the MCalibrationQECam: (MCalibrate is not called from this class)
33	//
34	//Begin_Html
35	/*
36	<img src="images/CalibClasses.gif">
37	*/
38	//End_Html
39	//
40	// Different signal extractors can be set with the command SetExtractor()
41	// Only extractors deriving from MExtractor can be set, default is MExtractSlidingWindow
42	//
43	// Different arrival time extractors can be set with the command SetTimeExtractor()
44	// Only extractors deriving from MExtractTime can be set, default is MExtractTimeHighestIntegral
45	//
46	// At the end of the eventloop, plots and results are displayed, depending on
47	// the flags set (see DisplayResult())
48	//
49	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
50	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
51	// Otherwise, (default: SetNormalDisplay()), a good selection of plots is given
52	//
53	// The absolute light calibration devices Blind Pixel and PIN Diode can be switched on
54	// and off with the commands:
55	//
56	// - SetUseBlindPixel(Bool_t )
57	// - SetUsePINDiode(Bool_t )
58	//
59	// See also: MHCalibrationChargePix, MHCalibrationChargeCam, MHGausEvents
60	// MHCalibrationChargeBlindPix, MHCalibrationChargePINDiode
61	// MCalibrationChargePix, MCalibrationChargeCam, MCalibrationChargeCalc
62	// MCalibrationBlindPix, MCalibrationChargePINDiode,
63	// MCalibrationQECam, MBadPixelsPix, MBadPixelsCam
64	//
65	// If the flag RelTimeCalibration() is set, a calibration of the relative arrival
66	// times is also performed. The following containers (rectangular) and
67	// tasks (ellipses) are called to produce an MCalibrationRelTimeCam used by
68	// MCalibrateTime to correct timing offset between pixels: (MCalibrateTime is not
69	// called from this class)
70	//
71	//Begin_Html
72	/*
73	<img src="images/RelTimeClasses.gif">
74	*/
75	//End_Html
76	//
77	// Different arrival time extractors can be set directly with the command
78	// SetTimeExtractor(MExtractor *)
79	//
80	// Resource file entries are case sensitive!
81	//
82	// See also: MHCalibrationRelTimePix, MHCalibrationRelTimeCam, MHGausEvents
83	// MCalibrationRelTimePix, MCalibrationRelTimeCam
84	// MBadPixelsPix, MBadPixelsCam
85	//
86	/////////////////////////////////////////////////////////////////////////////
87	#include "MJCalibration.h"
88
89	#include <TFile.h>
90	#include <TF1.h>
91	#include <TStyle.h>
92	#include <TCanvas.h>
93	#include <TSystem.h>
94	#include <TLine.h>
95	#include <TLatex.h>
96	#include <TLegend.h>
97	#include <TRegexp.h>
98	#include <TPaveText.h>
99	#include <TPaveStats.h>
100	#include <TEnv.h>
101
102	#include "MLog.h"
103	#include "MLogManip.h"
104
105	#include "MRunIter.h"
106	#include "MSequence.h"
107	#include "MParList.h"
108	#include "MTaskList.h"
109	#include "MEvtLoop.h"
110
111	#include "MHCamera.h"
112	#include "MGeomCam.h"
113
114	#include "MPedestalCam.h"
115	#include "MCalibColorSteer.h"
116
117	#include "MCalibrationIntensityChargeCam.h"
118	#include "MCalibrationIntensityBlindCam.h"
119	#include "MCalibrationIntensityRelTimeCam.h"
120	#include "MCalibrationIntensityQECam.h"
121
122	#include "MCalibrationPatternDecode.h"
123	#include "MCalibrationCam.h"
124	#include "MCalibrationQECam.h"
125	#include "MCalibrationQEPix.h"
126	#include "MCalibrationChargeCam.h"
127	#include "MCalibrationChargePix.h"
128	#include "MCalibrationChargePINDiode.h"
129	#include "MCalibrationBlindPix.h"
130	#include "MCalibrationBlindCam.h"
131	#include "MCalibrationBlindCamOneOldStyle.h"
132	#include "MCalibrationBlindCamTwoNewStyle.h"
133	#include "MCalibrationBlindCamThreeNewStyle.h"
134	#include "MCalibrationChargeCalc.h"
135	#include "MCalibColorSet.h"
136	#include "MCalibrationRelTimeCam.h"
137	#include "MCalibrationRelTimeCalc.h"
138
139	#include "MHGausEvents.h"
140	#include "MHCalibrationCam.h"
141	#include "MHCalibrationChargeCam.h"
142	#include "MHCalibrationChargeBlindCam.h"
143	#include "MHCalibrationChargePINDiode.h"
144	#include "MHCalibrationRelTimeCam.h"
145	#include "MHCalibrationPix.h"
146
147	#include "MReadMarsFile.h"
148	#include "MPedCalcPedRun.h"
149	#include "MRawFileRead.h"
150	#include "MGeomApply.h"
151	#include "MTaskEnv.h"
152	#include "MBadPixelsMerge.h"
153	#include "MBadPixelsCam.h"
154	#include "MExtractTime.h"
155	#include "MExtractor.h"
156	#include "MExtractPINDiode.h"
157	#include "MExtractBlindPixel.h"
158	#include "MExtractSlidingWindow.h"
159	#include "MExtractTimeHighestIntegral.h"
160	#include "MFCosmics.h"
161	#include "MContinue.h"
162	#include "MFillH.h"
163
164	#include "MArrivalTimeCam.h"
165
166	#include "MStatusDisplay.h"
167
168	ClassImp(MJCalibration);
169
170	using namespace std;
171
172	const Int_t MJCalibration::gkIFAEBoxInaugurationRun = 20113;
173	const Int_t MJCalibration::gkSecondBlindPixelInstallation = 31693;
174	const Int_t MJCalibration::gkSpecialPixelsContInstallation = 34057;
175	const Int_t MJCalibration::gkThirdBlindPixelInstallation = 43308;
176	const TString MJCalibration::fgReferenceFile = "mjobs/calibrationref.rc";
177	// --------------------------------------------------------------------------
178	//
179	// Default constructor.
180	//
181	// - Sets fRuns to 0, fExtractor to NULL, fTimeExtractor to NULL, fColor to kNONE,
182	// fDisplay to kNormalDisplay, kRelTimes to kFALSE, kataCheck to kFALSE, kDebug to kFALSE,
183	// kIntensity to kFALSE
184	// - SetUseBlindPixel()
185	// - SetUsePINDiode()
186	//
187	MJCalibration::MJCalibration(const char name, const char title)
188	: fExtractor(NULL), fTimeExtractor(NULL),
189	fColor(MCalibrationCam::kNONE), fDisplayType(kDataCheckDisplay),
190	fGeometry("MGeomCamMagic")
191	{
192
193	fName = name ? name : "MJCalibration";
194	fTitle = title ? title : "Tool to create the calibration constants for one calibration run";
195
196	SetUseBlindPixel();
197	SetUsePINDiode();
198
199	SetRelTimeCalibration();
200	SetDebug(kFALSE);
201	SetIntensity(kFALSE);
202
203	SetNoStorage(kFALSE);
204	SetHistsStorage(kFALSE);
205
206	SetReferenceFile();
207
208	fConvFADC2PheMin = 0.;
209	fConvFADC2PheMax = 1.5;
210	fConvFADC2PhotMin = 0.;
211	fConvFADC2PhotMax = 10.;
212	fQEMin = 0.;
213	fQEMax = 0.3;
214	fArrivalTimeMin = 1.;
215	fArrivalTimeMax = 10.;
216	fTimeOffsetMin = -3.;
217	fTimeOffsetMax = 3.;
218	fTimeResolutionMin = 0.;
219	fTimeResolutionMax = 1.;
220
221	fRefConvFADC2PheInner = 0.14;
222	fRefConvFADC2PheOuter = 0.4;
223	fRefConvFADC2PhotInner = 0.8;
224	fRefConvFADC2PhotOuter = 3.8;
225	fRefQEInner = 0.18;
226	fRefQEOuter = 0.12;
227	fRefArrivalTimeInner = 4.5;
228	fRefArrivalTimeOuter = 5.0;
229	fRefArrivalTimeRmsInner = 0.5;
230	fRefArrivalTimeRmsOuter = 0.5;
231	fRefTimeOffsetInner = -0.23;
232	fRefTimeOffsetOuter = 0.39;
233	fRefTimeResolutionInner = 0.153;
234	fRefTimeResolutionOuter = 0.128;
235
236	}
237
238	void MJCalibration::DrawTab(MParList &plist, const char cont, const char name, Option_t *opt)
239	{
240	TObject *obj = plist.FindObject(cont);
241	if (!obj)
242	return;
243
244	fDisplay->AddTab(name);
245	obj->DrawClone(opt);
246	}
247
248	// --------------------------------------------------------------------------
249	//
250	// Display the results in MStatusDisplay:
251	//
252	// - Add "Calibration" to the MStatusDisplay title
253	// - Retrieve the MGeomCam from MParList
254	// - Initialize the following MHCamera's:
255	// 1) MCalibrationPix::GetMean()
256	// 2) MCalibrationPix::Sigma()
257	// 3) MCalibrationChargePix::GetRSigma()
258	// 4) MCalibrationChargePix::GetRSigmaPerCharge()
259	// 5) MCalibrationChargePix::GetPheFFactorMethod()
260	// 6) MCalibrationChargePix::GetMeanConvFADC2Phe()
261	// 7) MCalibrationChargePix::GetMeanFFactorFADC2Phot()
262	// 8) MCalibrationQEPix::GetQECascadesFFactor()
263	// 9) MCalibrationQEPix::GetQECascadesBlindPixel()
264	// 10) MCalibrationQEPix::GetQECascadesPINDiode()
265	// 11) MCalibrationQEPix::GetQECascadesCombined()
266	// 12) MCalibrationQEPix::IsAverageQEFFactorAvailable()
267	// 13) MCalibrationQEPix::IsAverageQEBlindPixelAvailable()
268	// 14) MCalibrationQEPix::IsAverageQEPINDiodeAvailable()
269	// 15) MCalibrationQEPix::IsAverageQECombinedAvailable()
270	// 16) MCalibrationChargePix::IsHiGainSaturation()
271	// 17) MCalibrationPix::GetHiLoMeansDivided()
272	// 18) MCalibrationPix::GetHiLoSigmasDivided()
273	// 19) MCalibrationChargePix::GetHiGainPickup()
274	// 20) MCalibrationChargePix::GetLoGainPickup()
275	// 21) MCalibrationChargePix::GetHiGainBlackout()
276	// 22) MCalibrationChargePix::GetLoGainBlackout()
277	// 23) MCalibrationPix::IsExcluded()
278	// 24) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnsuitableRun)
279	// 25) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnreliableRun)
280	// 26) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kHiGainOscillating)
281	// 27) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kLoGainOscillating)
282	// 28) MCalibrationChargePix::GetAbsTimeMean()
283	// 29) MCalibrationChargePix::GetAbsTimeRms()
284	//
285	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
286	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
287	// and otherwise, (default: SetNormalDisplay()), a good selection of plots is given
288	//
289	void MJCalibration::DisplayResult(MParList &plist)
290	{
291	if (!fDisplay)
292	return;
293
294	TString drawoption = "nonew ";
295	if (fDisplayType == kDataCheckDisplay)
296	drawoption += "datacheck";
297	if (fDisplayType == kFullDisplay)
298	drawoption += "all";
299
300	if (IsUsePINDiode())
301	DrawTab(plist, "MHCalibrationChargePINDiode", "PINDiode", drawoption);
302	if (IsUseBlindPixel())
303	DrawTab(plist, "MHCalibrationChargeBlindCam", "BlindPix", drawoption);
304	if (IsRelTimes())
305	DrawTab(plist, "MHCalibrationRelTimeCam", "Time", drawoption);
306	DrawTab(plist, "MHCalibrationChargeCam", "Charge", drawoption);
307
308	//
309	// Update display
310	//
311	TString title = fDisplay->GetTitle();
312	title += "-- Calibration ";
313	title += fSequence.IsValid() ? Form("calib%08d", fSequence.GetSequence()) : (const char*)fRuns->GetRunsAsString();
314	title += " --";
315	fDisplay->SetTitle(title);
316
317	//
318	// Get container from list
319	//
320	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
321
322	// Create histograms to display
323	MHCamera disp1 (geomcam, "Charge", "Fitted Mean Signal (Charges)");
324	MHCamera disp2 (geomcam, "SigmaCharge", "Sigma of Fitted Signal");
325	MHCamera disp3 (geomcam, "RSigma", "Reduced Sigmas");
326	MHCamera disp4 (geomcam, "RSigmaPerCharge", "Reduced Sigma per Charge");
327	MHCamera disp5 (geomcam, "NumPhes", "Number Photo-electrons");
328	MHCamera disp6 (geomcam, "ConvFADC2Phes", "Conversion Factor to Phes");
329	MHCamera disp7 (geomcam, "TotalFFactor", "Total F-Factor(F-Factor Method)");
330	MHCamera disp8 (geomcam, "CascadesQEFFactor", "Cascades QE (F-Factor Method)");
331	MHCamera disp9 (geomcam, "CascadesQEBlindPix","Cascades QE (Blind Pixel Method)");
332	MHCamera disp10(geomcam, "CascadesQEPINDiode","Cascades QE (PIN Diode Method)");
333	MHCamera disp11(geomcam, "CascadesQECombined","Cascades QE (Combined Method)");
334	MHCamera disp12(geomcam, "FFactorValid", "Pixels with valid F-Factor calibration");
335	MHCamera disp13(geomcam, "BlindPixelValid", "Pixels with valid BlindPixel calibration");
336	MHCamera disp14(geomcam, "PINdiodeValid", "Pixels with valid PINDiode calibration");
337	MHCamera disp15(geomcam, "CombinedValid", "Pixels with valid Combined calibration");
338	MHCamera disp16(geomcam, "Saturation", "Pixels with saturated Hi Gain");
339	MHCamera disp17(geomcam, "ConversionMeans", "Conversion HiGain.vs.LoGain Means");
340	MHCamera disp18(geomcam, "ConversionSigmas", "Conversion HiGain.vs.LoGain Sigmas");
341	MHCamera disp19(geomcam, "HiGainPickup", "Number Pickup events Hi Gain");
342	MHCamera disp20(geomcam, "LoGainPickup", "Number Pickup events Lo Gain");
343	MHCamera disp21(geomcam, "HiGainBlackout", "Number Blackout events Hi Gain");
344	MHCamera disp22(geomcam, "LoGainBlackout", "Number Blackout events Lo Gain");
345	MHCamera disp23(geomcam, "Excluded", "Pixels previously excluded");
346	MHCamera disp24(geomcam, "UnSuitable", "Pixels not suited for further analysis");
347	MHCamera disp25(geomcam, "UnReliable", "Pixels suitable, but not reliable for further analysis");
348	MHCamera disp26(geomcam, "HiGainOscillating", "Oscillating Pixels High Gain");
349	MHCamera disp27(geomcam, "LoGainOscillating", "Oscillating Pixels Low Gain");
350	MHCamera disp28(geomcam, "AbsTimeMean", "Abs. Arrival Times");
351	MHCamera disp29(geomcam, "AbsTimeRms", "RMS of Arrival Times");
352	MHCamera disp30(geomcam, "MeanTime", "Mean Rel. Arrival Times");
353	MHCamera disp31(geomcam, "SigmaTime", "Sigma Rel. Arrival Times");
354	MHCamera disp32(geomcam, "TimeProb", "Probability of Time Fit");
355	MHCamera disp33(geomcam, "TimeNotFitValid", "Pixels with not valid fit results");
356	MHCamera disp34(geomcam, "TimeOscillating", "Oscillating Pixels");
357	MHCamera disp35(geomcam, "TotalConv", "Conversion Factor to photons");
358	MHCamera disp36(geomcam, "RMSperMean", "Charge histogram RMS per Mean");
359
360	MCalibrationChargeCam *cam = NULL;
361	MCalibrationQECam *qecam = NULL;
362	MCalibrationRelTimeCam *relcam = NULL;
363	MBadPixelsCam *badcam = NULL;
364
365	if (IsIntensity())
366	{
367	cam = (MCalibrationChargeCam*) fIntensCalibCam.GetCam();
368	qecam = (MCalibrationQECam*) fIntensQECam.GetCam();
369	relcam = (MCalibrationRelTimeCam*)fIntensRelTimeCam.GetCam();
370	badcam = (MBadPixelsCam*) fIntensBadCam.GetCam();
371	}
372	else
373	{
374	cam = &fCalibrationCam;
375	qecam = &fQECam;
376	relcam = &fRelTimeCam;
377	badcam = &fBadPixels;
378	}
379
380	// Fitted charge means and sigmas
381	disp1.SetCamContent(*cam, 0);
382	disp1.SetCamError( *cam, 1);
383	disp2.SetCamContent(*cam, 2);
384	disp2.SetCamError( *cam, 3);
385
386	// Reduced Sigmas and reduced sigmas per charge
387	disp3.SetCamContent(*cam, 5);
388	disp3.SetCamError( *cam, 6);
389	disp4.SetCamContent(*cam, 7);
390	disp4.SetCamError( *cam, 8);
391
392	// F-Factor Method
393	disp5.SetCamContent(*cam, 9);
394	disp5.SetCamError( *cam, 10);
395	disp6.SetCamContent(*cam, 11);
396	disp6.SetCamError( *cam, 12);
397	disp7.SetCamContent(*cam, 13);
398	disp7.SetCamError( *cam, 14);
399
400	// Quantum Efficiencies
401	disp8.SetCamContent (*qecam, 0 );
402	disp8.SetCamError (*qecam, 1 );
403	disp9.SetCamContent (*qecam, 2 );
404	disp9.SetCamError (*qecam, 3 );
405	disp10.SetCamContent(*qecam, 4 );
406	disp10.SetCamError (*qecam, 5 );
407	disp11.SetCamContent(*qecam, 6 );
408	disp11.SetCamError (*qecam, 7 );
409
410	// Valid flags
411	disp12.SetCamContent(*qecam, 8 );
412	disp13.SetCamContent(*qecam, 9 );
413	disp14.SetCamContent(*qecam, 10);
414	disp15.SetCamContent(*qecam, 11);
415
416	// Conversion Hi-Lo
417	disp16.SetCamContent(*cam, 25);
418	disp17.SetCamContent(*cam, 16);
419	disp17.SetCamError (*cam, 17);
420	disp18.SetCamContent(*cam, 18);
421	disp18.SetCamError (*cam, 19);
422
423	// Pickup and Blackout
424	disp19.SetCamContent(*cam, 21);
425	disp20.SetCamContent(*cam, 22);
426	disp21.SetCamContent(*cam, 23);
427	disp22.SetCamContent(*cam, 24);
428
429	// Pixels with defects
430	disp23.SetCamContent(*cam, 20);
431	disp24.SetCamContent(*badcam, 6);
432	disp25.SetCamContent(*badcam, 7);
433
434	// Oscillations
435	disp26.SetCamContent(*badcam, 10);
436	disp27.SetCamContent(*badcam, 11);
437
438	// Arrival Times
439	disp28.SetCamContent(*cam, 26);
440	disp28.SetCamError( *cam, 27);
441	disp29.SetCamContent(*cam, 27);
442
443	// RMS and Mean
444	disp36.SetCamContent(*cam,32);
445
446	disp1.SetYTitle("Q [FADC cnts]");
447	disp2.SetYTitle("\\sigma_{Q} [FADC cnts]");
448
449	disp3.SetYTitle("\\sqrt{\\sigma^{2}_{Q} - RMS^{2}_{Ped}} [FADC cnts]");
450	disp4.SetYTitle("Red.Sigma/<Q> [1]");
451
452	disp5.SetYTitle("Photo-electons [1]");
453	disp6.SetYTitle("Conv.Factor [PhE/FADC cnts]");
454	disp7.SetYTitle("Total F-Factor [1]");
455
456	disp8.SetYTitle("QE [1]");
457	disp9.SetYTitle("QE [1]");
458	disp10.SetYTitle("QE [1]");
459	disp11.SetYTitle("QE [1]");
460
461	disp12.SetYTitle("[1]");
462	disp13.SetYTitle("[1]");
463	disp14.SetYTitle("[1]");
464	disp15.SetYTitle("[1]");
465	disp16.SetYTitle("[1]");
466
467	disp17.SetYTitle("<Q>(High)/<Q>(Low) [1]");
468	disp18.SetYTitle("\\sigma_{Q}(High)/\\sigma_{Q}(Low) [1]");
469
470	disp19.SetYTitle("[1]");
471	disp20.SetYTitle("[1]");
472	disp21.SetYTitle("[1]");
473	disp22.SetYTitle("[1]");
474	// disp23.SetYTitle("[1]");
475	// disp24.SetYTitle("[1]");
476	// disp25.SetYTitle("[1]");
477	disp26.SetYTitle("[1]");
478	disp27.SetYTitle("[1]");
479
480	disp28.SetYTitle("Mean Abs. Time [FADC sl.]");
481	disp29.SetYTitle("RMS Abs. Time [FADC sl.]");
482
483	disp35.SetYTitle("Conv.Factor [Ph/FADC cnts]");
484
485	disp36.SetYTitle("Charge RMS/<Q> [1]");
486
487	for (UInt_t i=0;i<geomcam.GetNumPixels();i++)
488	{
489
490	MCalibrationChargePix &pix = (MCalibrationChargePix&)(*cam) [i];
491	MCalibrationQEPix &qe = (MCalibrationQEPix&) (*qecam)[i];
492
493	if (!pix.IsFFactorMethodValid())
494	continue;
495
496	const Float_t convphe = pix.GetMeanConvFADC2Phe();
497	const Float_t quaeff = qe.GetQECascadesFFactor(0.);
498
499	disp35.Fill(i,convphe/quaeff);
500	disp35.SetUsed(i);
501	}
502
503
504	if (IsRelTimes())
505	{
506	disp30.SetCamContent(*relcam,0);
507	disp30.SetCamError( *relcam,1);
508	disp31.SetCamContent(*relcam,2);
509	disp31.SetCamError( *relcam,3);
510	disp32.SetCamContent(*relcam,4);
511	disp33.SetCamContent(fBadPixels,20);
512	disp34.SetCamContent(fBadPixels,21);
513
514	disp30.SetYTitle("Time Offset [FADC units]");
515	disp31.SetYTitle("Timing resolution [FADC units]");
516	disp32.SetYTitle("P_{Time} [1]");
517	disp33.SetYTitle("[1]");
518	disp34.SetYTitle("[1]");
519	}
520
521	if (fDisplayType == kDataCheckDisplay)
522	{
523
524	TCanvas &c1 = fDisplay->AddTab("FitCharge");
525	c1.Divide(3, 3);
526
527	//
528	// MEAN CHARGES
529	//
530
531	c1.cd(1);
532	gPad->SetBorderMode(0);
533	gPad->SetTicks();
534	MHCamera obj1=(MHCamera)disp1.DrawCopy("hist");
535	//
536	// for the datacheck, fix the ranges!!
537	//
538	// obj1->SetMinimum(fChargeMin);
539	// obj1->SetMaximum(fChargeMax);
540	//
541	// Set the datacheck sizes:
542	//
543	FixDataCheckHist((TH1D*)obj1);
544	obj1->SetStats(kFALSE);
545	//
546	// set reference lines
547	//
548	// DisplayReferenceLines(obj1,0);
549
550	c1.cd(4);
551	gPad->SetBorderMode(0);
552	obj1->SetPrettyPalette();
553	obj1->Draw();
554
555	c1.cd(7);
556	gPad->SetBorderMode(0);
557	gPad->SetTicks();
558	TH1D obj2 = (TH1D)obj1->Projection(obj1->GetName());
559	obj2->Draw();
560	obj2->SetBit(kCanDelete);
561	obj2->Fit("gaus","Q");
562	TF1 *fun2 = obj2->GetFunction("gaus");
563	fun2->SetLineColor(kYellow);
564	gPad->Modified();
565	gPad->Update();
566	TPaveStats st = (TPaveStats)obj2->GetListOfFunctions()->FindObject("stats");
567	st->SetY1NDC(0.55);
568	st->SetY2NDC(0.89);
569	st->SetX1NDC(0.65);
570	st->SetX2NDC(0.99);
571	gPad->Modified();
572	gPad->Update();
573	//
574	// Set the datacheck sizes:
575	//
576	FixDataCheckHist(obj2);
577	obj2->SetStats(1);
578
579	//
580	// Display the outliers as dead and noisy pixels
581	//
582	DisplayOutliers(obj2,"low-ampl.","high-ampl.");
583	TLatex flattex;
584	flattex.SetTextSize(0.07);
585	const Double_t minl = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
586	const Double_t maxl = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
587	flattex.DrawLatex(minl+0.015*(maxl-minl),obj2->GetBinContent(obj2->GetMaximumBin())/1.35,
588	Form("Flatfield precision: %4.2f%%",
589	fun2->GetParameter(2)/fun2->GetParameter(1)*100.));
590
591	//
592	// RMS per Charge
593	//
594
595	c1.cd(2);
596	gPad->SetBorderMode(0);
597	gPad->SetTicks();
598	MHCamera obj3=(MHCamera)disp36.DrawCopy("hist");
599	//
600	// for the datacheck, fix the ranges!!
601	//
602	// obj3->SetMinimum(0.);
603	// obj3->SetMaximum(fChargeMax);
604	//
605	// Set the datacheck sizes:
606	//
607	FixDataCheckHist((TH1D*)obj3);
608	obj3->SetStats(kFALSE);
609	//
610	// set reference lines
611	//
612	// DisplayReferenceLines(obj3,0);
613
614	c1.cd(5);
615	gPad->SetBorderMode(0);
616	obj3->SetPrettyPalette();
617	obj3->Draw();
618
619	c1.cd(8);
620	gPad->SetBorderMode(0);
621	if (geomcam.InheritsFrom("MGeomCamMagic"))
622	DisplayDoubleProject(&disp36, "dead", "noisy");
623
624	//
625	// PHOTO ELECTRONS
626	//
627
628	c1.cd(3);
629	gPad->SetBorderMode(0);
630	gPad->SetTicks();
631	MHCamera obj4=(MHCamera)disp5.DrawCopy("hist");
632	//
633	// for the datacheck, fix the ranges!!
634	//
635	// obj3->SetMinimum(fChargeMin);
636	// obj3->SetMaximum(fChargeMax);
637	//
638	// Set the datacheck sizes:
639	//
640	FixDataCheckHist((TH1D*)obj4);
641	obj4->SetStats(kFALSE);
642	//
643	// set reference lines
644	//
645	// DisplayReferenceLines(obj3,0);
646
647	c1.cd(6);
648	gPad->SetBorderMode(0);
649	obj4->SetPrettyPalette();
650	obj4->Draw();
651
652	c1.cd(9);
653	gPad->SetBorderMode(0);
654	if (geomcam.InheritsFrom("MGeomCamMagic"))
655	DisplayDoubleProject(&disp5, "dead", "noisy");
656
657	//
658	// CONVERSION FACTORS
659	//
660	TCanvas &c2 = fDisplay->AddTab("Conversion");
661	c2.Divide(3,3);
662
663	c2.cd(1);
664	gPad->SetBorderMode(0);
665	gPad->SetTicks();
666	MHCamera obj5=(MHCamera)disp6.DrawCopy("hist");
667	//
668	// for the datacheck, fix the ranges!!
669	//
670	obj5->SetMinimum(fConvFADC2PheMin);
671	obj5->SetMaximum(fConvFADC2PheMax);
672	//
673	// Set the datacheck sizes:
674	//
675	FixDataCheckHist((TH1D*)obj5);
676	obj5->SetStats(kFALSE);
677	//
678	// set reference lines
679	//
680	DisplayReferenceLines(obj5,2);
681
682	c2.cd(4);
683	gPad->SetBorderMode(0);
684	obj5->SetPrettyPalette();
685	obj5->Draw();
686
687	c2.cd(7);
688	gPad->SetBorderMode(0);
689	if (geomcam.InheritsFrom("MGeomCamMagic"))
690	DisplayDoubleProject(&disp6, "noisy", "dead");
691
692	//
693	// QUANTUM EFFICIENCY
694	//
695	c2.cd(2);
696	gPad->SetBorderMode(0);
697	gPad->SetTicks();
698	MHCamera obj6=(MHCamera)disp8.DrawCopy("hist");
699	//
700	// for the datacheck, fix the ranges!!
701	//
702	obj6->SetMinimum(fQEMin);
703	obj6->SetMaximum(fQEMax);
704	//
705	// Set the datacheck sizes:
706	//
707	FixDataCheckHist((TH1D*)obj6);
708	obj6->SetStats(kFALSE);
709	//
710	// set reference lines
711	//
712	DisplayReferenceLines(obj6,0);
713
714	c2.cd(5);
715	gPad->SetBorderMode(0);
716	obj6->SetPrettyPalette();
717	obj6->Draw();
718
719	c2.cd(8);
720	gPad->SetBorderMode(0);
721	if (geomcam.InheritsFrom("MGeomCamMagic"))
722	DisplayDoubleProject(&disp8, "noisy", "dead");
723
724	//
725	// CONVERSION FADC TO PHOTONS
726	//
727
728	c2.cd(3);
729	gPad->SetBorderMode(0);
730	gPad->SetTicks();
731	MHCamera obj7=(MHCamera)disp35.DrawCopy("hist");
732	//
733	// for the datacheck, fix the ranges!!
734	//
735	obj7->SetMinimum(fConvFADC2PhotMin);
736	obj7->SetMaximum(fConvFADC2PhotMax);
737	//
738	// Set the datacheck sizes:
739	//
740	FixDataCheckHist((TH1D*)obj7);
741	obj7->SetStats(kFALSE);
742	//
743	// set reference lines
744	//
745	DisplayReferenceLines(obj7,1);
746
747	c2.cd(6);
748	gPad->SetBorderMode(0);
749	obj7->SetPrettyPalette();
750	obj7->Draw();
751	c2.cd(9);
752	gPad->SetBorderMode(0);
753	if (geomcam.InheritsFrom("MGeomCamMagic"))
754	DisplayDoubleProject(&disp35, "noisy", "dead");
755
756	//
757	// ARRIVAL TIMES
758	//
759	TCanvas &c3 = fDisplay->AddTab("AbsTimes");
760	c3.Divide(2,3);
761
762	c3.cd(1);
763	gPad->SetBorderMode(0);
764	gPad->SetTicks();
765	MHCamera obj10=(MHCamera)disp28.DrawCopy("hist");
766	//
767	// for the datacheck, fix the ranges!!
768	//
769	obj10->SetMinimum(fArrivalTimeMin);
770	obj10->SetMaximum(fArrivalTimeMax);
771	//
772	// Set the datacheck sizes:
773	//
774	FixDataCheckHist((TH1D*)obj10);
775	obj10->SetStats(kFALSE);
776	//
777	// set reference lines
778	//
779	DisplayReferenceLines(obj10,3);
780
781	c3.cd(3);
782	gPad->SetBorderMode(0);
783	obj10->SetPrettyPalette();
784	obj10->Draw();
785
786	c3.cd(5);
787	gPad->SetBorderMode(0);
788	if (geomcam.InheritsFrom("MGeomCamMagic"))
789	DisplayDoubleProject(&disp28, "early", "late");
790
791	//
792	// ARRIVAL TIMES JITTER
793	//
794	c3.cd(2);
795	gPad->SetBorderMode(0);
796	gPad->SetTicks();
797	MHCamera obj11=(MHCamera)disp29.DrawCopy("hist");
798	//
799	// for the datacheck, fix the ranges!!
800	//
801	// obj11->SetMinimum(fArrivalTimeMin);
802	// obj11->SetMaximum(fArrivalTimeMax);
803	//
804	// Set the datacheck sizes:
805	//
806	FixDataCheckHist((TH1D*)obj11);
807	obj11->SetStats(kFALSE);
808	//
809	// set reference lines
810	//
811	DisplayReferenceLines(obj11,4);
812
813	c3.cd(4);
814	gPad->SetBorderMode(0);
815	obj11->SetPrettyPalette();
816	obj11->Draw();
817
818	c3.cd(6);
819	gPad->SetBorderMode(0);
820	if (geomcam.InheritsFrom("MGeomCamMagic"))
821	DisplayDoubleProject(&disp29, "", "jittering");
822
823	//
824	// UNSUITABLE PIXELS
825	//
826	TCanvas &c4 = fDisplay->AddTab("Defect");
827	c4.Divide(2,2);
828
829	c4.cd(1);
830	gPad->SetBorderMode(0);
831	gPad->SetTicks();
832	MHCamera obj8=(MHCamera)disp24.DrawCopy("hist");
833	//
834	// for the datacheck, fix the ranges!!
835	//
836	const Double_t max = 11.;
837	obj8->SetMinimum(0.);
838	obj8->SetMaximum(11.);
839	//
840	// Set the datacheck sizes:
841	//
842	FixDataCheckHist((TH1D*)obj8);
843	obj8->SetStats(kFALSE);
844
845	gStyle->SetPalette(1);
846	const Int_t numcol = gStyle->GetNumberOfColors()-3;
847
848	TPaveText *pave = new TPaveText(0.0,0.0,0.99,0.99);
849	pave->SetBit(kCanDelete);
850	pave->ConvertNDCtoPad();
851	pave->SetTextSize(0.05);
852	pave->AddText(" ");
853	TText *t1 = pave->AddText(Form("Signal smaller 3 Pedestal RMS: %3i pixels",
854	CountBadPixels(&disp24,1)));
855	t1->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol + 1.)));
856	t1->SetTextAlign(12);
857	TText *t2 = pave->AddText(Form("%s%3i%s","Signal Rel. error too large: ",
858	CountBadPixels(&disp24,2)," pixels"));
859	t2->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol + 1.)));
860	t2->SetTextAlign(12);
861	TText *t4 = pave->AddText(Form("Low Gain Saturation: %3i pixels",
862	CountBadPixels(&disp24,3)));
863	t4->SetTextColor(gStyle->GetColorPalette(Int_t(3./max*numcol + 1.)));
864	t4->SetTextAlign(12);
865	TText *t5 = pave->AddText(Form("Mean Arr. Time In First Extraction Bin: %3i pixels",
866	CountBadPixels(&disp24,4)));
867	t5->SetTextColor(gStyle->GetColorPalette(Int_t(4./max*numcol + 1.)));
868	t5->SetTextAlign(12);
869	TText *t6 = pave->AddText(Form("Mean Arr. Time In Last 2 Extraction Bins: %3i pixels",
870	CountBadPixels(&disp24,5)));
871	t6->SetTextColor(gStyle->GetColorPalette(Int_t(5./max*numcol + 1.)));
872	t6->SetTextAlign(12);
873	TText *t9 = pave->AddText(Form("Deviating Number of Photons: %3i pixels",
874	CountBadPixels(&disp24,6)));
875	t9->SetTextColor(gStyle->GetColorPalette(Int_t(6./max*numcol + 1.)));
876	t9->SetTextAlign(12);
877	TText *t10= pave->AddText(Form("High-Gain Histogram Overflow: %3i pixels",
878	CountBadPixels(&disp24,7 )));
879	t10->SetTextColor(gStyle->GetColorPalette(Int_t(7./max*numcol + 1.)));
880	t10->SetTextAlign(12);
881	TText *t11= pave->AddText(Form("Low-Gain Histogram Overflow: %3i pixels",
882	CountBadPixels(&disp24,8 )));
883	t11->SetTextColor(gStyle->GetColorPalette(Int_t(8./max*numcol + 1.)));
884	t11->SetTextAlign(12);
885	TText *t12= pave->AddText(Form("Previously Excluded: %3i pixels",
886	CountBadPixels(&disp24,9)));
887	t12->SetTextColor(gStyle->GetColorPalette(Int_t(9./max*numcol + 1.)));
888	t12->SetTextAlign(12);
889	pave->Draw();
890
891	c4.cd(3);
892	gPad->SetBorderMode(0);
893	obj8->Draw();
894	obj8->SetPrettyPalette();
895
896	//
897	// UNRELIABLE PIXELS
898	//
899
900	c4.cd(2);
901	gPad->SetBorderMode(0);
902	gPad->SetTicks();
903	MHCamera obj9=(MHCamera)disp25.DrawCopy("hist");
904	//
905	// for the datacheck, fix the ranges!!
906	//
907	const Double_t max2 = 8.;
908	obj9->SetMinimum(0.);
909	obj9->SetMaximum(max2);
910	//
911	// Set the datacheck sizes:
912	//
913	FixDataCheckHist((TH1D*)obj9);
914	obj9->SetStats(kFALSE);
915
916	gStyle->SetPalette(1);
917
918	TPaveText *pave2 = new TPaveText(0.0,0.0,0.99,0.99);
919	pave2->SetBit(kCanDelete);
920	pave2->ConvertNDCtoPad();
921	pave2->SetTextSize(0.05);
922	pave2->AddText(" ");
923	TText *t3 = pave2->AddText(Form("Signal Sigma smaller Pedestal RMS: %3i pixels",
924	CountBadPixels(&disp25,1)));
925	t3->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol + 1.)));
926	t3->SetTextAlign(12);
927
928	TText *t7 = pave2->AddText(Form("Deviating Number of Photo-electrons: %3i pixels",
929	CountBadPixels(&disp25,2)));
930	t7->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol + 1.)));
931	t7->SetTextAlign(12);
932
933	TText *tt1 = pave2->AddText(Form("High Gain Signals could not be fitted: %3i pixels",
934	CountBadPixels(&disp25,3)));
935	tt1->SetTextColor(gStyle->GetColorPalette(Int_t(3./max2*numcol + 1.)));
936	tt1->SetTextAlign(12);
937	TText *tt2 = pave2->AddText(Form("Low Gain Signals could not be fitted: %3i pixels",
938	CountBadPixels(&disp25,4)));
939	tt2->SetTextColor(gStyle->GetColorPalette(Int_t(4./max2*numcol + 1.)));
940	tt2->SetTextAlign(12);
941	TText *tt3 = pave2->AddText(Form("Relative Arr. Times could not be fitted: %3i pixels",
942	CountBadPixels(&disp25,5)));
943	tt3->SetTextColor(gStyle->GetColorPalette(Int_t(5./max2*numcol + 1.)));
944	tt3->SetTextAlign(12);
945	TText *tt4 = pave2->AddText(Form("High Gain Signals Oscillation: %3i pixels",
946	CountBadPixels(&disp25,6)));
947	tt4->SetTextColor(gStyle->GetColorPalette(Int_t(6./max2*numcol + 1.)));
948	tt4->SetTextAlign(12);
949	TText *tt5 = pave2->AddText(Form("Low Gain Signals Oscillation: %3i pixels",
950	CountBadPixels(&disp25,7)));
951	tt5->SetTextColor(gStyle->GetColorPalette(Int_t(7./max2*numcol + 1.)));
952	tt5->SetTextAlign(12);
953	TText *tt6 = pave2->AddText(Form("Relative Arr. Times Oscillation: %3i pixels",
954	CountBadPixels(&disp25,8)));
955	tt6->SetTextColor(gStyle->GetColorPalette(Int_t(8./max2*numcol + 1.)));
956	tt6->SetTextAlign(12);
957	TText *tt8 = pave2->AddText(Form("Deviating global F-Factor: %3i pixels",
958	CountBadPixels(&disp25,9)));
959	tt8->SetTextColor(gStyle->GetColorPalette(Int_t(9./max2*numcol + 1.)));
960	tt8->SetTextAlign(12);
961	pave2->Draw();
962
963	c4.cd(4);
964	gPad->SetBorderMode(0);
965	obj9->SetPrettyPalette();
966	obj9->Draw();
967
968	if (IsRelTimes())
969	{
970	TCanvas &c5 = fDisplay->AddTab("RelTimes");
971	c5.Divide(2,3);
972
973	//
974	// MEAN REL. ARR. TIMES
975	//
976	c5.cd(1);
977	gPad->SetBorderMode(0);
978	gPad->SetTicks();
979	MHCamera obj10=(MHCamera)disp30.DrawCopy("hist");
980	//
981	// for the datacheck, fix the ranges!!
982	//
983	obj10->SetMinimum(fTimeOffsetMin);
984	obj10->SetMaximum(fTimeOffsetMax);
985	//
986	// Set the datacheck sizes:
987	//
988	FixDataCheckHist((TH1D*)obj10);
989	obj10->SetStats(kFALSE);
990	//
991	// set reference lines
992	//
993	DisplayReferenceLines(obj10,5);
994
995	c5.cd(3);
996	gPad->SetBorderMode(0);
997	obj10->SetPrettyPalette();
998	obj10->Draw();
999
1000	c5.cd(5);
1001	gPad->SetBorderMode(0);
1002	if (geomcam.InheritsFrom("MGeomCamMagic"))
1003	DisplayDoubleProject(&disp30, "early", "late");
1004
1005	//
1006	// JITTER Rel. Arr. Times
1007	//
1008	c5.cd(2);
1009	gPad->SetBorderMode(0);
1010	gPad->SetTicks();
1011	MHCamera obj11=(MHCamera)disp31.DrawCopy("hist");
1012	//
1013	// for the datacheck, fix the ranges!!
1014	//
1015	obj11->SetMinimum(fTimeResolutionMin);
1016	obj11->SetMaximum(fTimeResolutionMax);
1017	//
1018	// Set the datacheck sizes:
1019	//
1020	FixDataCheckHist((TH1D*)obj11);
1021	obj11->SetStats(kFALSE);
1022	//
1023	// set reference lines
1024	//
1025	DisplayReferenceLines(obj11,6);
1026
1027	c5.cd(4);
1028	gPad->SetBorderMode(0);
1029	obj11->SetPrettyPalette();
1030	obj11->Draw();
1031
1032	c5.cd(6);
1033	gPad->SetBorderMode(0);
1034	if (geomcam.InheritsFrom("MGeomCamMagic"))
1035	DisplayDoubleProject(&disp31, "too stable", "jittering");
1036
1037	}
1038	return;
1039	}
1040
1041	if (fDisplayType == kNormalDisplay)
1042	{
1043
1044	// Charges
1045	TCanvas &c11 = fDisplay->AddTab("FitCharge");
1046	c11.Divide(2, 4);
1047
1048	disp1.CamDraw(c11, 1, 2, 5, 1);
1049	disp2.CamDraw(c11, 2, 2, 5, 1);
1050
1051	// Reduced Sigmas
1052	TCanvas &c12 = fDisplay->AddTab("RedSigma");
1053	c12.Divide(2,4);
1054
1055	disp3.CamDraw(c12, 1, 2, 5, 1);
1056	disp4.CamDraw(c12, 2, 2, 5, 1);
1057
1058	// F-Factor
1059	TCanvas &c13 = fDisplay->AddTab("Phe's");
1060	c13.Divide(3,4);
1061
1062	disp5.CamDraw(c13, 1, 3, 5, 1);
1063	disp6.CamDraw(c13, 2, 3, 5, 1);
1064	disp7.CamDraw(c13, 3, 3, 5, 1);
1065
1066	// QE's
1067	TCanvas &c14 = fDisplay->AddTab("QE's");
1068	c14.Divide(4,4);
1069
1070	disp8.CamDraw(c14, 1, 4, 5, 1);
1071	disp9.CamDraw(c14, 2, 4, 5, 1);
1072	disp10.CamDraw(c14, 3, 4, 5, 1);
1073	disp11.CamDraw(c14, 4, 4, 5, 1);
1074
1075	// Defects
1076	TCanvas &c15 = fDisplay->AddTab("Defect");
1077	// c15.Divide(5,2);
1078	c15.Divide(4,2);
1079
1080	/*
1081	disp23.CamDraw(c15, 1, 5, 0);
1082	disp24.CamDraw(c15, 2, 5, 0);
1083	disp25.CamDraw(c15, 3, 5, 0);
1084	disp26.CamDraw(c15, 4, 5, 0);
1085	disp27.CamDraw(c15, 5, 5, 0);
1086	*/
1087	disp24.CamDraw(c15, 1, 4, 0);
1088	disp25.CamDraw(c15, 2, 4, 0);
1089	disp26.CamDraw(c15, 3, 4, 0);
1090	disp27.CamDraw(c15, 4, 4, 0);
1091
1092	// Abs. Times
1093	TCanvas &c16 = fDisplay->AddTab("AbsTimes");
1094	c16.Divide(2,3);
1095
1096	disp28.CamDraw(c16, 1, 2, 5);
1097	disp29.CamDraw(c16, 2, 2, 5);
1098
1099	if (IsRelTimes())
1100	{
1101	// Rel. Times
1102	TCanvas &c17 = fDisplay->AddTab("RelTimes");
1103	c17.Divide(2,4);
1104
1105	disp30.CamDraw(c17, 1, 2, 5, 1);
1106	disp31.CamDraw(c17, 2, 2, 5, 1);
1107	}
1108
1109	return;
1110	}
1111
1112	if (fDisplayType == kFullDisplay)
1113	{
1114	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationChargeCam");
1115
1116	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1117	{
1118	cam->GetAverageHiGainSector(sector).DrawClone("all");
1119	cam->GetAverageLoGainSector(sector).DrawClone("all");
1120	}
1121
1122	// Charges
1123	TCanvas &c21 = fDisplay->AddTab("FitCharge");
1124	c21.Divide(2, 4);
1125
1126	disp1.CamDraw(c21, 1, 2, 2, 1);
1127	disp2.CamDraw(c21, 2, 2, 2, 1);
1128
1129	// Reduced Sigmas
1130	TCanvas &c23 = fDisplay->AddTab("RedSigma");
1131	c23.Divide(2,4);
1132
1133	disp3.CamDraw(c23, 1, 2, 2, 1);
1134	disp4.CamDraw(c23, 2, 2, 2, 1);
1135
1136	// F-Factor
1137	TCanvas &c24 = fDisplay->AddTab("Phe's");
1138	c24.Divide(3,5);
1139
1140	disp5.CamDraw(c24, 1, 3, 2, 1, 1);
1141	disp6.CamDraw(c24, 2, 3, 2, 1, 1);
1142	disp7.CamDraw(c24, 3, 3, 2, 1, 1);
1143
1144	// QE's
1145	TCanvas &c25 = fDisplay->AddTab("QE's");
1146	c25.Divide(4,5);
1147
1148	disp8.CamDraw(c25, 1, 4, 2, 1, 1);
1149	disp9.CamDraw(c25, 2, 4, 2, 1, 1);
1150	disp10.CamDraw(c25, 3, 4, 2, 1, 1);
1151	disp11.CamDraw(c25, 4, 4, 2, 1, 1);
1152
1153	// Validity
1154	TCanvas &c26 = fDisplay->AddTab("Valid");
1155	c26.Divide(4,2);
1156
1157	disp12.CamDraw(c26, 1, 4, 0);
1158	disp13.CamDraw(c26, 2, 4, 0);
1159	disp14.CamDraw(c26, 3, 4, 0);
1160	disp15.CamDraw(c26, 4, 4, 0);
1161
1162	// Other info
1163	TCanvas &c27 = fDisplay->AddTab("HiLoGain");
1164	c27.Divide(3,3);
1165
1166	disp16.CamDraw(c27, 1, 3, 0);
1167	disp17.CamDraw(c27, 2, 3, 1);
1168	disp18.CamDraw(c27, 3, 3, 1);
1169
1170	// Pickup
1171	TCanvas &c28 = fDisplay->AddTab("Pickup");
1172	c28.Divide(4,2);
1173
1174	disp19.CamDraw(c28, 1, 4, 0);
1175	disp20.CamDraw(c28, 2, 4, 0);
1176	disp21.CamDraw(c28, 3, 4, 0);
1177	disp22.CamDraw(c28, 4, 4, 0);
1178
1179	// Defects
1180	TCanvas &c29 = fDisplay->AddTab("Defect");
1181	// c29.Divide(5,2);
1182	c29.Divide(4,2);
1183
1184	disp24.CamDraw(c29, 1, 4, 0);
1185	disp25.CamDraw(c29, 2, 4, 0);
1186	disp26.CamDraw(c29, 3, 4, 0);
1187	disp27.CamDraw(c29, 4, 4, 0);
1188
1189	// Abs. Times
1190	TCanvas &c30 = fDisplay->AddTab("AbsTimes");
1191	c30.Divide(2,3);
1192
1193	disp28.CamDraw(c30, 1, 2, 2);
1194	disp29.CamDraw(c30, 2, 2, 1);
1195
1196	if (IsRelTimes())
1197	{
1198	// Rel. Times
1199	TCanvas &c31 = fDisplay->AddTab("RelTimes");
1200	c31.Divide(3,5);
1201
1202	disp30.CamDraw(c31, 1, 3, 2, 1, 1);
1203	disp31.CamDraw(c31, 2, 3, 2, 1, 1);
1204	disp32.CamDraw(c31, 3, 3, 4, 1, 1);
1205
1206	// Time Defects
1207	TCanvas &c32 = fDisplay->AddTab("DefTime");
1208	c32.Divide(2,2);
1209
1210	disp33.CamDraw(c32, 1, 2, 0);
1211	disp34.CamDraw(c32, 2, 2, 0);
1212
1213	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationRelTimeCam");
1214
1215	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1216	{
1217	cam->GetAverageHiGainSector(sector).DrawClone("fourierevents");
1218	cam->GetAverageLoGainSector(sector).DrawClone("fourierevents");
1219	}
1220
1221	}
1222
1223	return;
1224	}
1225	}
1226
1227
1228	void MJCalibration::DisplayReferenceLines(MHCamera *cam, const Int_t what) const
1229	{
1230
1231	const MGeomCam *geom = cam->GetGeometry();
1232
1233	Double_t x = geom->InheritsFrom("MGeomCamMagic") ? 397 : cam->GetNbinsX() ;
1234
1235	TLine line;
1236	line.SetLineStyle(kDashed);
1237	line.SetLineWidth(3);
1238	line.SetLineColor(kBlue);
1239
1240	TLine *l1 = NULL;
1241
1242	switch (what)
1243	{
1244	case 0:
1245	l1 = line.DrawLine(0, fRefQEInner, x, fRefQEInner);
1246	break;
1247	case 1:
1248	l1 = line.DrawLine(0, fRefConvFADC2PhotInner, x, fRefConvFADC2PhotInner);
1249	break;
1250	case 2:
1251	l1 = line.DrawLine(0, fRefConvFADC2PheInner, x, fRefConvFADC2PheInner );
1252	break;
1253	case 3:
1254	l1 = line.DrawLine(0, fRefArrivalTimeInner, x, fRefArrivalTimeInner );
1255	break;
1256	case 4:
1257	l1 = line.DrawLine(0, fRefArrivalTimeRmsInner, x, fRefArrivalTimeRmsInner );
1258	break;
1259	case 5:
1260	l1 = line.DrawLine(0, fRefTimeOffsetInner, x, fRefTimeOffsetInner );
1261	break;
1262	case 6:
1263	l1 = line.DrawLine(0, fRefTimeResolutionInner, x, fRefTimeResolutionInner );
1264	break;
1265	default:
1266	break;
1267	}
1268
1269	if (geom->InheritsFrom("MGeomCamMagic"))
1270	{
1271	const Double_t x2 = cam->GetNbinsX();
1272
1273	switch (what)
1274	{
1275	case 0:
1276	line.DrawLine(x2, fRefQEOuter, 398, fRefQEOuter);
1277	break;
1278	case 1:
1279	line.DrawLine(x2, fRefConvFADC2PhotOuter, 398, fRefConvFADC2PhotOuter );
1280	break;
1281	case 2:
1282	line.DrawLine(x2, fRefConvFADC2PheOuter, 398, fRefConvFADC2PheOuter);
1283	break;
1284	case 3:
1285	line.DrawLine(x2, fRefArrivalTimeOuter, 398, fRefArrivalTimeOuter);
1286	break;
1287	case 4:
1288	line.DrawLine(x2, fRefArrivalTimeRmsOuter, 398, fRefArrivalTimeRmsOuter);
1289	break;
1290	case 5:
1291	line.DrawLine(x2, fRefTimeOffsetOuter, 398, fRefTimeOffsetOuter);
1292	break;
1293	case 6:
1294	line.DrawLine(x2, fRefTimeResolutionOuter, 398, fRefTimeResolutionOuter);
1295	break;
1296	default:
1297	break;
1298	}
1299	}
1300
1301	TLegend *leg = new TLegend(0.6,0.85,0.9 ,0.95);
1302	leg->SetBit(kCanDelete);
1303	leg->AddEntry(l1, "Reference","l");
1304	leg->Draw();
1305	}
1306
1307	void MJCalibration::DisplayOutliers(TH1D hist, const char whatsmall, const char* whatbig) const
1308	{
1309
1310	const Int_t kNotDraw = 1<<9;
1311	TF1 *f = hist->GetFunction("gaus");
1312	f->ResetBit(kNotDraw);
1313
1314	const Float_t mean = f->GetParameter(1);
1315	const Float_t lolim = mean - 4.0*f->GetParameter(2);
1316	const Float_t uplim = mean + 4.0*f->GetParameter(2);
1317	const Stat_t dead = hist->Integral(0,hist->FindBin(lolim)-1);
1318	const Stat_t noisy = hist->Integral(hist->FindBin(uplim)+1,hist->GetNbinsX()+1);
1319
1320	const Double_t max = hist->GetBinContent(hist->GetMaximumBin());
1321
1322	const Double_t minl = hist->GetBinCenter(hist->GetXaxis()->GetFirst());
1323	const Double_t maxl = hist->GetBinCenter(hist->GetXaxis()->GetLast());
1324
1325	TLatex deadtex;
1326	deadtex.SetTextSize(0.07);
1327	deadtex.DrawLatex(minl+0.015*(maxl-minl),max/1.1,
1328	Form("%3i %s pixels",(Int_t)dead,whatsmall));
1329
1330	TLatex noisytex;
1331	noisytex.SetTextSize(0.07);
1332	noisytex.DrawLatex(minl+0.015*(maxl-minl),max/1.2,
1333	Form("%3i %s pixels",(Int_t)noisy,whatbig));
1334
1335	}
1336
1337	void MJCalibration::FixDataCheckHist(TH1D *hist) const
1338	{
1339
1340	hist->SetDirectory(NULL);
1341
1342	//
1343	// set the labels bigger
1344	//
1345	TAxis *xaxe = hist->GetXaxis();
1346	TAxis *yaxe = hist->GetYaxis();
1347
1348	xaxe->CenterTitle();
1349	yaxe->CenterTitle();
1350	xaxe->SetTitleSize(0.06);
1351	yaxe->SetTitleSize(0.06);
1352	xaxe->SetTitleOffset(0.8);
1353	yaxe->SetTitleOffset(0.85);
1354	xaxe->SetLabelSize(0.05);
1355	yaxe->SetLabelSize(0.05);
1356
1357	}
1358
1359	const Int_t MJCalibration::CountBadPixels ( MHCamera *cam , const Int_t what ) const
1360	{
1361
1362	Int_t cnt = 0;
1363
1364	for (UInt_t pix=0; pix<cam->GetNumPixels();pix++)
1365	if ((Int_t)cam->GetPixContent(pix) == what)
1366	cnt++;
1367
1368	return cnt;
1369	}
1370
1371	// --------------------------------------------------------------------------
1372	//
1373	// Retrieve the output file written by WriteResult()
1374	//
1375	const char* MJCalibration::GetOutputFile() const
1376	{
1377	const TString name(GetOutputFileName());
1378	if (name.IsNull())
1379	return "";
1380
1381	return Form("%s/%s", fPathOut.Data(), name.Data());
1382	}
1383
1384	const char* MJCalibration::GetOutputFileName() const
1385	{
1386
1387	if (fSequence.IsValid())
1388	return Form("calib%08d.root", fSequence.GetSequence());
1389	if (!fRuns)
1390	return "";
1391
1392	return Form("%s-F1.root", (const char*)fRuns->GetRunsAsFileName());
1393	}
1394
1395	// --------------------------------------------------------------------------
1396	//
1397	// Read the following values from resource file:
1398	//
1399	// ConvFADC2PheMin
1400	// ConvFADC2PheMax
1401	// ConvFADC2PhotMin
1402	// ConvFADC2PhotMax
1403	//
1404	// QEMin
1405	// QEMax
1406	//
1407	// ArrivalTimeMin
1408	// ArrivalTimeMax
1409	//
1410	// TimeOffsetMin
1411	// TimeOffsetMax
1412	// TimeResolutionMin
1413	// TimeResolutionMax
1414	//
1415	// RefConvFADC2PheInner
1416	// RefConvFADC2PheOuter
1417	// RefConvFADC2PhotInner
1418	// RefConvFADC2PhotOuter
1419	//
1420	// RefQEInner
1421	// RefQEOuter
1422	//
1423	// RefArrivalTimeInner
1424	// RefArrivalTimeOuter
1425	// RefArrivalTimeRmsInner
1426	// RefArrivalTimeRmsOuter
1427	//
1428	// RefTimeOffsetInner
1429	// RefTimeOffsetOuter
1430	// RefTimeResolutionInner
1431	// RefTimeResolutionOuter
1432	//
1433	void MJCalibration::ReadReferenceFile()
1434	{
1435	TEnv refenv(fReferenceFile);
1436
1437	fConvFADC2PheMin = refenv.GetValue("ConvFADC2PheMin",fConvFADC2PheMin);
1438	fConvFADC2PheMax = refenv.GetValue("ConvFADC2PheMax",fConvFADC2PheMax);
1439	fConvFADC2PhotMin = refenv.GetValue("ConvFADC2PhotMin",fConvFADC2PhotMin);
1440	fConvFADC2PhotMax = refenv.GetValue("ConvFADC2PhotMax",fConvFADC2PhotMax);
1441	fQEMin = refenv.GetValue("QEMin",fQEMin);
1442	fQEMax = refenv.GetValue("QEMax",fQEMax);
1443	fArrivalTimeMin = refenv.GetValue("ArrivalTimeMin",fArrivalTimeMin);
1444	fArrivalTimeMax = refenv.GetValue("ArrivalTimeMax",fArrivalTimeMax);
1445	fTimeOffsetMin = refenv.GetValue("TimeOffsetMin",fTimeOffsetMin);
1446	fTimeOffsetMax = refenv.GetValue("TimeOffsetMax",fTimeOffsetMax);
1447	fTimeResolutionMin = refenv.GetValue("TimeResolutionMin",fTimeResolutionMin);
1448	fTimeResolutionMax = refenv.GetValue("TimeResolutionMax",fTimeResolutionMax);
1449
1450	fRefConvFADC2PheInner = refenv.GetValue("RefConvFADC2PheInner",fRefConvFADC2PheInner);
1451	fRefConvFADC2PheOuter = refenv.GetValue("RefConvFADC2PheOuter",fRefConvFADC2PheOuter);
1452	fRefConvFADC2PhotInner = refenv.GetValue("RefConvFADC2PhotInner",fRefConvFADC2PhotInner);
1453	fRefConvFADC2PhotOuter = refenv.GetValue("RefConvFADC2PhotOuter",fRefConvFADC2PhotOuter);
1454	fRefQEInner = refenv.GetValue("RefQEInner",fRefQEInner);
1455	fRefQEOuter = refenv.GetValue("RefQEOuter",fRefQEOuter);
1456	fRefArrivalTimeInner = refenv.GetValue("RefArrivalTimeInner",fRefArrivalTimeInner);
1457	fRefArrivalTimeOuter = refenv.GetValue("RefArrivalTimeOuter",fRefArrivalTimeOuter);
1458	fRefArrivalTimeRmsInner = refenv.GetValue("RefArrivalTimeRmsInner",fRefArrivalTimeRmsInner);
1459	fRefArrivalTimeRmsOuter = refenv.GetValue("RefArrivalTimeRmsOuter",fRefArrivalTimeRmsOuter);
1460	fRefTimeOffsetInner = refenv.GetValue("RefTimeOffsetInner",fRefTimeOffsetInner);
1461	fRefTimeOffsetOuter = refenv.GetValue("RefTimeOffsetOuter",fRefTimeOffsetOuter);
1462	fRefTimeResolutionInner = refenv.GetValue("RefTimeResolutionInner",fRefTimeResolutionInner);
1463	fRefTimeResolutionOuter = refenv.GetValue("RefTimeResolutionOuter",fRefTimeResolutionOuter);
1464	}
1465
1466	// --------------------------------------------------------------------------
1467	//
1468	// MJCalibration allows to setup several option by a resource file:
1469	// MJCalibration.Display: full, datacheck, normal
1470	// MJCalibration.RelTimeCalibration: yes,no
1471	// MJCalibration.DataCheck: yes,no
1472	// MJCalibration.Debug: yes,no
1473	// MJCalibration.Intensity: yes,no
1474	// MJCalibration.UseBlindPixel: yes,no
1475	// MJCalibration.UsePINDiode: yes,no
1476	// MJCalibration.Geometry: MGeomCamMagic, MGeomCamECO1000
1477	//
1478	// Name of a file containing reference values (see ReadReferenceFile)
1479	// Prefix.ReferenceFile: filename
1480	// (see ReadReferenceFile)
1481	//
1482	// For more details see the class description and the corresponding Getters
1483	//
1484	Bool_t MJCalibration::CheckEnvLocal()
1485	{
1486
1487	TString dis = GetEnv("Display", "");
1488	if (dis.BeginsWith("Full", TString::kIgnoreCase))
1489	SetFullDisplay();
1490	if (dis.BeginsWith("DataCheck", TString::kIgnoreCase))
1491	SetDataCheckDisplay();
1492	if (dis.BeginsWith("Normal", TString::kIgnoreCase))
1493	SetNormalDisplay();
1494
1495	if (!MJCalib::CheckEnvLocal())
1496	return kFALSE;
1497
1498	SetRelTimeCalibration(GetEnv("RelTimeCalibration", IsRelTimes()));
1499	SetIntensity(GetEnv("IntensityCalibration", IsIntensity()));
1500	SetDebug(GetEnv("Debug", IsDebug()));
1501
1502	SetUseBlindPixel(GetEnv("UseBlindPixel", IsUseBlindPixel()));
1503	SetUsePINDiode(GetEnv("UsePINDiode", IsUsePINDiode()));
1504	SetGeometry(GetEnv("Geometry", fGeometry));
1505
1506	fReferenceFile = GetEnv("ReferenceFile",fReferenceFile.Data());
1507	ReadReferenceFile();
1508
1509	return kTRUE;
1510	}
1511
1512	// --------------------------------------------------------------------------
1513	//
1514	// Call the ProcessFile(MPedestalCam)
1515	//
1516	Bool_t MJCalibration::Process(MPedestalCam &pedcam)
1517	{
1518	if (!ReadCalibrationCam())
1519	return ProcessFile(pedcam);
1520
1521	return kTRUE;
1522	}
1523
1524	void MJCalibration::InitBlindPixel(MExtractBlindPixel &blindext,
1525	MHCalibrationChargeBlindCam &blindcam)
1526	{
1527
1528	Int_t run = fSequence.IsValid() ? fSequence.GetLastRun() : fRuns->GetRuns()[fRuns->GetNumRuns()-1];
1529
1530	//
1531	// Initialize the blind pixel. Unfortunately, there is a hardware difference
1532	// in the first blind pixel until run "gkSecondBlindPixelInstallation" and the
1533	// later setup. The first needs to use a filter because of the length of
1534	// spurious NSB photon signals. The latter get better along extracting the amplitude
1535	// from a small window.
1536	//
1537	if (run < gkSecondBlindPixelInstallation)
1538	{
1539	MCalibrationBlindCamOneOldStyle blindresults;
1540	if (IsIntensity())
1541	blindresults.Copy(*fIntensBlindCam.GetCam());
1542	else
1543	blindresults.Copy(fCalibrationBlindCam);
1544
1545	blindext.SetExtractionType(MExtractBlindPixel::kIntegral);
1546	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1547	blindext.SetRange(10,19,0,6);
1548	blindext.SetNSBFilterLimit(70);
1549	}
1550	else if (run < gkThirdBlindPixelInstallation)
1551	{
1552
1553	MCalibrationBlindCamTwoNewStyle blindresults;
1554
1555	if (IsIntensity())
1556	blindresults.Copy(*fIntensBlindCam.GetCam());
1557	else
1558	blindresults.Copy(fCalibrationBlindCam);
1559
1560	blindext.SetNumBlindPixels(blindresults.GetSize());
1561	for (Int_t i=0;i<blindresults.GetSize();i++)
1562	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1563
1564	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1565	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1566	blindext.SetRange(5,8,0,2);
1567	blindext.SetNSBFilterLimit(38);
1568
1569	}
1570	else
1571	{
1572
1573	MCalibrationBlindCamThreeNewStyle blindresults;
1574
1575	if (IsIntensity())
1576	blindresults.Copy(*fIntensBlindCam.GetCam());
1577	else
1578	blindresults.Copy(fCalibrationBlindCam);
1579
1580	blindext.SetNumBlindPixels(blindresults.GetSize());
1581
1582	for (Int_t i=0;i<blindresults.GetSize();i++)
1583	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1584
1585	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1586	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1587	blindext.SetDataType(MExtractBlindPixel::kRawEvt2);
1588	blindext.SetRange(5,8,0,2);
1589	blindext.SetNSBFilterLimit(38);
1590
1591	}
1592
1593	}
1594
1595	// --------------------------------------------------------------------------
1596	//
1597	// Execute the task list and the eventloop:
1598	//
1599	// - Check if there are fRuns, otherwise return
1600	// - Check the colour of the files in fRuns (FindColor()), otherwise return
1601	// - Check for consistency between run numbers and number of files
1602	// - Add fRuns to MReadMarsFile
1603	// - Put into MParList:
1604	// 1) MPedestalCam (pedcam)
1605	// 2) MCalibrationQECam (fQECam)
1606	// 3) MCalibrationChargeCam (fCalibrationCam)
1607	// 4) MCalibrationRelTimeCam (fRelTimeCam) (only if flag IsRelTimes() is chosen)
1608	// 5) MBadPixelsCam (fBadPixels)
1609	// 6) MCalibrationChargePINDiode
1610	// 7) MCalibrationBlindPix
1611	// - Put into the MTaskList:
1612	// 1) MReadMarsFile
1613	// 2) MBadPixelsMerge
1614	// 3) MGeomApply
1615	// 4) MExtractor
1616	// 5) MExtractPINDiode
1617	// 6) MExtractBlindPixel
1618	// 7) MExtractTime (only if flag IsRelTimes() is chosen)
1619	// 8) MContinue(MFCosmics)
1620	// 9) MFillH("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode")
1621	// 10) MFillH("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam")
1622	// 11) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam")
1623	// 12) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillRelTime")
1624	// 13) MCalibrationChargeCalc
1625	// 14) MFillH("MHCalibrationRelTimeCam", "MArrivalTimeCam") (only if flag IsRelTimes() is chosen)
1626	// 15) MCalibrationRelTimeCalc
1627	// - Execute MEvtLoop
1628	// - DisplayResult()
1629	// - WriteResult()
1630	//
1631	Bool_t MJCalibration::ProcessFile(MPedestalCam &pedcam)
1632	{
1633	if (!fSequence.IsValid())
1634	{
1635	if (!fRuns)
1636	{
1637	*fLog << err << "No Runs choosen... abort." << endl;
1638	return kFALSE;
1639	}
1640
1641	if (fRuns->GetNumRuns() != fRuns->GetNumEntries())
1642	{
1643	*fLog << err << "Number of files found doesn't match number of runs... abort."
1644	<< fRuns->GetNumRuns() << " vs. " << fRuns->GetNumEntries() << endl;
1645	return kFALSE;
1646	}
1647	}
1648
1649	//if (!CheckEnv())
1650	// return kFALSE;
1651
1652	CheckEnv();
1653
1654	// --------------------------------------------------------------------------------
1655
1656	*fLog << inf;
1657	fLog->Separator(GetDescriptor());
1658
1659	*fLog << "Calculate MCalibrationCam from ";
1660	if (fSequence.IsValid())
1661	*fLog << "Sequence #" << fSequence.GetSequence() << endl;
1662	else
1663	*fLog << "Runs " << fRuns->GetRunsAsString() << endl;
1664	*fLog << endl;
1665
1666	// --------------------------------------------------------------------------------
1667
1668	// Setup Tasklist
1669	MParList plist;
1670	MTaskList tlist;
1671	plist.AddToList(&tlist);
1672	plist.AddToList(this); // take care of fDisplay!
1673
1674	MDirIter iter;
1675	if (fSequence.IsValid())
1676	{
1677	const Int_t n0 = fSequence.SetupCalRuns(iter, fPathData, "C", IsUseRawData());
1678	const Int_t n1 = fSequence.GetNumCalRuns();
1679	if (n0==0)
1680	{
1681	*fLog << err << "ERROR - No input files of sequence found!" << endl;
1682	return kFALSE;
1683	}
1684	if (n0!=n1)
1685	{
1686	*fLog << err << "ERROR - Number of files found ("
1687	<< n0 << ") doesn't match number of files in sequence ("
1688	<< n1 << ")" << endl;
1689	return kFALSE;
1690	}
1691	}
1692
1693	//
1694	// Input containers
1695	//
1696	pedcam.SetName("MPedestalCam"); // MPedestalFundamental
1697	plist.AddToList(&pedcam);
1698	plist.AddToList(&fBadPixels);
1699
1700	//
1701	// Calibration Results containers
1702	//
1703	if (IsIntensity())
1704	{
1705	plist.AddToList(&fIntensQECam);
1706	plist.AddToList(&fIntensCalibCam);
1707	plist.AddToList(&fIntensBlindCam);
1708	// plist.AddToList(&fIntensCalibrationPINDiode);
1709	plist.AddToList(&fIntensRelTimeCam);
1710	plist.AddToList(&fIntensBadCam);
1711	}
1712	else
1713	{
1714	plist.AddToList(&fQECam);
1715	plist.AddToList(&fCalibrationCam);
1716	plist.AddToList(&fCalibrationBlindCam);
1717	plist.AddToList(&fCalibrationPINDiode);
1718	plist.AddToList(&fRelTimeCam);
1719	}
1720
1721	//
1722	// Initialize two histogram containers which could be modified in this class
1723	//
1724	MHCalibrationRelTimeCam reltimecam;
1725	MHCalibrationChargeCam chargecam;
1726	MHCalibrationChargeBlindCam blindcam;
1727	plist.AddToList(&chargecam);
1728	plist.AddToList(&blindcam);
1729	if (IsRelTimes())
1730	plist.AddToList(&reltimecam);
1731	//
1732	// Data Reading tasks
1733	//
1734	MReadMarsFile read("Events");
1735	MRawFileRead rawread(NULL);
1736
1737	if (IsUseRawData())
1738	{
1739	rawread.AddFiles(fSequence.IsValid() ? iter : *fRuns);
1740	tlist.AddToList(&rawread);
1741	}
1742	else
1743	{
1744	read.DisableAutoScheme();
1745	read.AddFiles(fSequence.IsValid() ? iter : *fRuns);
1746	tlist.AddToList(&read);
1747	}
1748
1749	//
1750	// Other Tasks
1751	//
1752	MCalibrationPatternDecode decode;
1753	MGeomApply apply;
1754	apply.SetGeometry(fGeometry);
1755
1756	MBadPixelsMerge merge(&fBadPixels);
1757	MExtractPINDiode pinext;
1758	MExtractBlindPixel blindext;
1759
1760	InitBlindPixel(blindext, blindcam);
1761
1762	MExtractSlidingWindow extract2;
1763	MExtractTimeHighestIntegral timehigh;
1764	MCalibrationChargeCalc calcalc;
1765	MCalibrationRelTimeCalc timecalc;
1766	calcalc.SetOutputFile("");
1767	timecalc.SetOutputFile("");
1768
1769	if (!fSequence.IsValid())
1770	{
1771	calcalc.SetOutputPath(fPathOut);
1772	calcalc.SetOutputFile(Form("%s-ChargeCalibStat.txt",(const char*)fRuns->GetRunsAsFileName()));
1773	timecalc.SetOutputPath(fPathOut);
1774	timecalc.SetOutputFile(Form("%s-ChargeCalibStat.txt",(const char*)fRuns->GetRunsAsFileName()));
1775	}
1776
1777	if (IsDebug())
1778	{
1779	chargecam.SetDebug();
1780	calcalc.SetDebug();
1781	}
1782
1783	//
1784	// Calibration histogramming
1785	//
1786	MFillH fillpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
1787	MFillH fillbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
1788	MFillH fillcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
1789	MFillH filltme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
1790	fillpin.SetBit(MFillH::kDoNotDisplay);
1791	fillbnd.SetBit(MFillH::kDoNotDisplay);
1792	fillcam.SetBit(MFillH::kDoNotDisplay);
1793	filltme.SetBit(MFillH::kDoNotDisplay);
1794
1795	//
1796	// Set default extractors in case, none has been set...
1797	//
1798	if (!fExtractor)
1799	fExtractor = &extract2;
1800	if (!fTimeExtractor)
1801	fTimeExtractor = &timehigh;
1802
1803	const Bool_t istimecharge = fExtractor->InheritsFrom("MExtractTimeAndCharge");
1804	//
1805	// Look if the extractor is a pure charge or also a time extractor
1806	//
1807	if (istimecharge)
1808	{
1809	if (fExtractorCam.GetSize() == pedcam.GetSize())
1810	calcalc.SetPedestals(&fExtractorCam);
1811	else
1812	{
1813	*fLog << err << GetDescriptor() << "ERROR - ";
1814	*fLog << "Used Extractor derives from MExtractTimeAndCharge, " << endl;
1815	*fLog << "but MExtractorCam size " << fExtractorCam.GetSize() << " ";
1816	*fLog << "mismatch pedcam size " << pedcam.GetSize() << "! " << endl;
1817	return kFALSE;
1818	}
1819	}
1820
1821	//
1822	// Setup more tasks and tasklist
1823	//
1824	MTaskEnv taskenv("ExtractSignal");
1825	taskenv.SetDefault(fExtractor);
1826
1827	tlist.AddToList(&decode);
1828	tlist.AddToList(&merge);
1829	tlist.AddToList(&apply);
1830
1831	MPedCalcPedRun pedcalc;
1832	pedcalc.SetExtractWindow(fExtractor->GetHiGainFirst(),TMath::Nint(fExtractor->GetNumHiGainSamples()));
1833
1834	if (IsIntensity())
1835	tlist.AddToList(&pedcalc);
1836
1837	MCalibColorSet colorset;
1838	tlist.AddToList(&colorset);
1839
1840	tlist.AddToList(&taskenv);
1841	tlist.AddToList(&pinext);
1842	tlist.AddToList(&blindext);
1843
1844	MTaskEnv taskenv2("ExtractTime");
1845	if (!istimecharge)
1846	{
1847	taskenv2.SetDefault(fTimeExtractor);
1848
1849	if (IsRelTimes())
1850	tlist.AddToList(&taskenv2);
1851	}
1852
1853	//
1854	// Apply a filter against cosmics
1855	// (will have to be needed in the future
1856	// when the calibration hardware-trigger is working)
1857	//
1858	MFCosmics cosmics;
1859	MContinue cont(&cosmics);
1860
1861	if (fColor == MCalibrationCam::kCT1)
1862	tlist.AddToList(&cont);
1863
1864	MCalibColorSteer steer;
1865	if (IsIntensity())
1866	tlist.AddToList(&steer);
1867
1868	tlist.AddToList(&fillcam);
1869
1870	if (IsRelTimes())
1871	{
1872	tlist.AddToList(&filltme);
1873	tlist.AddToList(&timecalc);
1874	}
1875
1876	if (IsUseBlindPixel())
1877	tlist.AddToList(&fillbnd);
1878	if (IsUsePINDiode())
1879	tlist.AddToList(&fillpin);
1880
1881	tlist.AddToList(&calcalc);
1882
1883	// Create and setup the eventloop
1884	MEvtLoop evtloop(fName);
1885	evtloop.SetParList(&plist);
1886	evtloop.SetDisplay(fDisplay);
1887	evtloop.SetLogStream(fLog);
1888	if (!SetupEnv(evtloop))
1889	return kFALSE;
1890
1891	if (!taskenv.GetTask() && !taskenv2.GetTask())
1892	{
1893	*fLog << err << "ERROR - Neither ExtractSignal nor ExtractTime initialized or both '<dummy>'." << endl;
1894	return kFALSE;
1895	}
1896
1897	if (!WriteTasks(taskenv.GetTask(), istimecharge ? 0 : taskenv2.GetTask()))
1898	return kFALSE;
1899
1900	// Execute first analysis
1901	if (!evtloop.Eventloop())
1902	{
1903	DisplayResult(plist);
1904	WriteResult(plist);
1905	*fLog << err << GetDescriptor() << ": Failed." << endl;
1906	return kFALSE;
1907	}
1908
1909	tlist.PrintStatistics();
1910
1911	if (fPixelCheck)
1912	{
1913	MHCalibrationChargeCam hcam = (MHCalibrationChargeCam)plist.FindObject("MHCalibrationChargeCam");
1914	MHCalibrationChargePix &pix1 = (MHCalibrationChargePix&)(*hcam)[fCheckedPixId];
1915	pix1.DrawClone("");
1916
1917	MHCalibrationChargePix &pix2 = (MHCalibrationChargePix&)(*hcam)(fCheckedPixId);
1918	pix2.DrawClone("");
1919
1920	if (IsRelTimes())
1921	{
1922	MHCalibrationRelTimeCam hccam = (MHCalibrationRelTimeCam)plist.FindObject("MHCalibrationRelTimeCam");
1923	MHCalibrationPix &pix11 = (*hccam)[fCheckedPixId];
1924	pix11.DrawClone("");
1925	MHCalibrationPix &pix12 = (*hccam)(fCheckedPixId);
1926	pix12.DrawClone("");
1927	}
1928	}
1929
1930	if (!fCalibrationPINDiode.IsValid())
1931	SetUsePINDiode(kFALSE);
1932
1933	DisplayResult(plist);
1934
1935	if (!WriteResult(plist))
1936	return kFALSE;
1937
1938	*fLog << all << GetDescriptor() << ": Done." << endl;
1939
1940	return kTRUE;
1941	}
1942
1943	// --------------------------------------------------------------------------
1944	//
1945	// Read the following containers from GetOutputFile()
1946	// - MCalibrationChargeCam
1947	// - MCalibrationQECam
1948	// - MBadPixelsCam
1949	//
1950	Bool_t MJCalibration::ReadCalibrationCam()
1951	{
1952
1953	if (IsNoStorage())
1954	return kFALSE;
1955
1956	const TString fname = GetOutputFile();
1957
1958	if (gSystem->AccessPathName(fname, kFileExists))
1959	{
1960	*fLog << err << "Input file " << fname << " doesn't exist." << endl;
1961	return kFALSE;
1962	}
1963
1964	*fLog << inf << "Reading from file: " << fname << endl;
1965
1966	TFile file(fname, "READ");
1967	if (fCalibrationCam.Read()<=0)
1968	{
1969	*fLog << err << "Unable to read MCalibrationChargeCam from " << fname << endl;
1970	return kFALSE;
1971	}
1972
1973	if (fQECam.Read()<=0)
1974	{
1975	*fLog << err << "Unable to read MCalibrationQECam from " << fname << endl;
1976	return kFALSE;
1977	}
1978
1979
1980	if (file.FindKey("MCalibrationRelTimeCam"))
1981	if (fRelTimeCam.Read()<=0)
1982	{
1983	*fLog << err << "Unable to read MCalibrationRelTimeCam from " << fname << endl;
1984	return kFALSE;
1985	}
1986
1987	if (file.FindKey("MBadPixelsCam"))
1988	{
1989	MBadPixelsCam bad;
1990	if (bad.Read()<=0)
1991	{
1992	*fLog << err << "Unable to read MBadPixelsCam from " << fname << endl;
1993	return kFALSE;
1994	}
1995	fBadPixels.Merge(bad);
1996	}
1997
1998	if (fDisplay /&& !fDisplay->GetCanvas("Pedestals")/) // FIXME!
1999	fDisplay->Read();
2000
2001	return kTRUE;
2002	}
2003
2004
2005	// --------------------------------------------------------------------------
2006	//
2007	// Set the useage of the Blind Pixel device
2008	//
2009	void MJCalibration::SetUseBlindPixel(const Bool_t b)
2010	{
2011	b ? SETBIT(fDevices,kUseBlindPixel) : CLRBIT(fDevices,kUseBlindPixel);
2012	}
2013
2014	// --------------------------------------------------------------------------
2015	//
2016	// Set the useage of the PIN Diode device
2017	//
2018	void MJCalibration::SetUsePINDiode(const Bool_t b)
2019	{
2020	b ? SETBIT(fDevices,kUsePINDiode) : CLRBIT(fDevices,kUsePINDiode);
2021	}
2022
2023	/*
2024	Bool_t MJCalibration::WriteEventloop(MEvtLoop &evtloop) const
2025	{
2026	if (IsNoStorage())
2027	return kTRUE;
2028
2029	if (fPathOut.IsNull())
2030	return kTRUE;
2031
2032	const TString oname(GetOutputFile());
2033
2034	*fLog << inf << "Writing to file: " << oname << endl;
2035
2036	TFile file(oname, fOverwrite?"RECREATE":"NEW", "File created by MJCalibration", 9);
2037	if (!file.IsOpen())
2038	{
2039	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
2040	return kFALSE;
2041	}
2042
2043	if (evtloop.Write(fName)<=0)
2044	{
2045	*fLog << err << "Unable to write MEvtloop to " << oname << endl;
2046	return kFALSE;
2047	}
2048
2049	return kTRUE;
2050	}
2051	*/
2052
2053	Bool_t MJCalibration::WriteTasks(MTask t1, MTask t2) const
2054	{
2055	if (IsNoStorage())
2056	return kTRUE;
2057
2058	TObjArray cont;
2059	if (t1)
2060	cont.Add(t1);
2061	if (t2)
2062	cont.Add(t2);
2063
2064	return WriteContainer(cont, GetOutputFileName(), fOverwrite?"RECREATE":"NEW");
2065	}
2066
2067	// --------------------------------------------------------------------------
2068	//
2069	// Write the result into the output file GetOutputFile(), if fOutputPath exists.
2070	//
2071	// The following containers are written:
2072	// - MStatusDisplay
2073	// - MCalibrationChargeCam or MCalibrationIntensityChargeCam
2074	// - MCalibrationBlindCam or MCalibrationIntensityBlindCam
2075	// - MCalibrationQECam or MCalibrationIntensityQECam
2076	// - MCalibrationChargePINDiode
2077	// - MBadPixelsCam
2078	// If the flag kRelTimes is set, then also:
2079	// - MCalibrationRelTimeCam or MCalibrationIntensityRelTimeCam
2080	//
2081	Bool_t MJCalibration::WriteResult(MParList &plist)
2082	{
2083	TObjArray cont;
2084
2085	if (!IsNoStorage())
2086	{
2087	if (IsIntensity())
2088	{
2089	cont.Add(&fIntensBadCam);
2090	cont.Add(&fIntensCalibCam);
2091	cont.Add(&fIntensQECam);
2092	cont.Add(&fIntensBlindCam);
2093	}
2094	else
2095	{
2096	cont.Add(&fBadPixels);
2097	cont.Add(&fCalibrationCam);
2098	cont.Add(&fQECam);
2099	cont.Add(&fCalibrationBlindCam);
2100	}
2101	cont.Add(&fCalibrationPINDiode);
2102
2103	//if (IsRelTimes())
2104	cont.Add(IsIntensity() ? (TObject)&fIntensRelTimeCam : (TObject)&fRelTimeCam);
2105
2106	TObject *geom = plist.FindObject("MGeomCam");
2107	if (!geom)
2108	*fLog << warn << " - WARNING - MGeomCam... not found for writing!" << endl;
2109	else
2110	cont.Add(geom);
2111	}
2112
2113	if (IsHistsStorage())
2114	{
2115	cont.Add(plist.FindObject("MHCalibrationChargeCam"));
2116	cont.Add(plist.FindObject("MHCalibrationChargeBlindCam"));
2117	cont.Add(plist.FindObject("MHCalibrationChargePINDiode"));
2118	if (IsRelTimes())
2119	cont.Add(plist.FindObject("MHCalibrationRelTimeCam"));
2120	}
2121
2122	return WriteContainer(cont, GetOutputFileName(), "UPDATE");
2123	}
2124
2125	void MJCalibration::DisplayDoubleProject(MHCamera cam, const char whatsmall, const char* whatbig) const
2126	{
2127
2128	TArrayI inner(1);
2129	inner[0] = 0;
2130
2131	TArrayI outer(1);
2132	outer[0] = 1;
2133
2134	TArrayI s1(3);
2135	s1[0] = 6;
2136	s1[1] = 1;
2137	s1[2] = 2;
2138
2139	TArrayI s2(3);
2140	s2[0] = 3;
2141	s2[1] = 4;
2142	s2[2] = 5;
2143
2144	TVirtualPad *pad = gPad;
2145	pad->Divide(2,1);
2146
2147	TH1D *inout[2];
2148
2149	for (int i=0; i<2; i++)
2150	{
2151	pad->cd(i+1);
2152	gPad->SetBorderMode(0);
2153	gPad->SetTicks();
2154
2155	inout[i] = cam->ProjectionS(TArrayI(), TArrayI(1,&i), i==0 ? "Inner" : "Outer");
2156	FixDataCheckHist(inout[i]);
2157	inout[i]->SetTitle(Form("%s %s",cam->GetTitle(),i==0 ? "Inner" : "Outer"));
2158	inout[i]->SetDirectory(NULL);
2159	inout[i]->SetLineColor(kRed+i);
2160	inout[i]->SetBit(kCanDelete);
2161	inout[i]->Draw();
2162	//
2163	// Display the outliers as dead and noisy pixels
2164	//
2165	if (!inout[i]->Fit("gaus","0Q"))
2166	DisplayOutliers(inout[i],whatsmall,whatbig);
2167
2168	gPad->Modified();
2169	gPad->Update();
2170	TPaveStats st = (TPaveStats)inout[i]->GetListOfFunctions()->FindObject("stats");
2171	st->SetY1NDC(0.6);
2172	st->SetY2NDC(0.9);
2173	st->SetX1NDC(0.55);
2174	st->SetX2NDC(0.99);
2175	gPad->Modified();
2176	gPad->Update();
2177
2178	TLegend *leg2 = new TLegend(0.55,0.4,0.99,0.6);
2179
2180	//
2181	// Display the two half of the camera separately
2182	//
2183	TH1D *half[2];
2184	half[0] = cam->ProjectionS(s1, TArrayI(1,&i), "Sector 6-1-2");
2185	half[1] = cam->ProjectionS(s2, TArrayI(1,&i), "Sector 3-4-5");
2186
2187	for (int j=0; j<2; j++)
2188	{
2189	half[j]->SetLineColor(kRed+i+2*j+1);
2190	half[j]->SetDirectory(NULL);
2191	half[j]->SetBit(kCanDelete);
2192	half[j]->Draw("same");
2193	leg2->AddEntry(half[j], half[j]->GetName(), "l");
2194	}
2195	leg2->Draw();
2196	}
2197	}

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