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Last change on this file since 6771 was 6771, checked in by gaug, 20 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	! Author(s): Markus Gaug, 02/2004 <mailto:markus@ifae.es>
20	!
21	! Copyright: MAGIC Software Development, 2000-2004
22	!
23	!
24	\* ======================================================================== */
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibration
28	//
29	// Do one calibration loop over serious of runs with the same pulser
30	// colour and the same intensity. The following containers (rectangular) and
31	// tasks (ellipses) are called to produce an MCalibrationChargeCam and to
32	// update the MCalibrationQECam: (MCalibrate is not called from this class)
33	//
34	//Begin_Html
35	/*
36	<img src="images/CalibClasses.gif">
37	*/
38	//End_Html
39	//
40	// Different signal extractors can be set with the command SetExtractor()
41	// Only extractors deriving from MExtractor can be set, default is MExtractSlidingWindow
42	//
43	// Different arrival time extractors can be set with the command SetTimeExtractor()
44	// Only extractors deriving from MExtractTime can be set, default is MExtractTimeHighestIntegral
45	//
46	// At the end of the eventloop, plots and results are displayed, depending on
47	// the flags set (see DisplayResult())
48	//
49	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
50	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
51	// Otherwise, (default: SetNormalDisplay()), a good selection of plots is given
52	//
53	// The absolute light calibration devices Blind Pixel and PIN Diode can be switched on
54	// and off with the commands:
55	//
56	// - SetUseBlindPixel(Bool_t )
57	// - SetUsePINDiode(Bool_t )
58	//
59	// See also: MHCalibrationChargePix, MHCalibrationChargeCam, MHGausEvents
60	// MHCalibrationChargeBlindPix, MHCalibrationChargePINDiode
61	// MCalibrationChargePix, MCalibrationChargeCam, MCalibrationChargeCalc
62	// MCalibrationBlindPix, MCalibrationChargePINDiode,
63	// MCalibrationQECam, MBadPixelsPix, MBadPixelsCam
64	//
65	// If the flag RelTimeCalibration() is set, a calibration of the relative arrival
66	// times is also performed. The following containers (rectangular) and
67	// tasks (ellipses) are called to produce an MCalibrationRelTimeCam used by
68	// MCalibrateTime to correct timing offset between pixels: (MCalibrateTime is not
69	// called from this class)
70	//
71	//Begin_Html
72	/*
73	<img src="images/RelTimeClasses.gif">
74	*/
75	//End_Html
76	//
77	// Different arrival time extractors can be set directly with the command
78	// SetTimeExtractor(MExtractor *)
79	//
80	// Resource file entries are case sensitive!
81	//
82	// See also: MHCalibrationRelTimePix, MHCalibrationRelTimeCam, MHGausEvents
83	// MCalibrationRelTimePix, MCalibrationRelTimeCam
84	// MBadPixelsPix, MBadPixelsCam
85	//
86	/////////////////////////////////////////////////////////////////////////////
87	#include "MJCalibration.h"
88
89	#include <TFile.h>
90	#include <TF1.h>
91	#include <TStyle.h>
92	#include <TCanvas.h>
93	#include <TSystem.h>
94	#include <TLine.h>
95	#include <TLatex.h>
96	#include <TLegend.h>
97	#include <TRegexp.h>
98	#include <TPaveText.h>
99	#include <TPaveStats.h>
100	#include <TEnv.h>
101
102	#include "MLog.h"
103	#include "MLogManip.h"
104
105	#include "MRunIter.h"
106	#include "MSequence.h"
107	#include "MParList.h"
108	#include "MTaskList.h"
109	#include "MEvtLoop.h"
110
111	#include "MHCamera.h"
112	#include "MGeomCam.h"
113
114	#include "MPedestalCam.h"
115	#include "MCalibColorSteer.h"
116
117	#include "MCalibrationIntensityChargeCam.h"
118	#include "MCalibrationIntensityBlindCam.h"
119	#include "MCalibrationIntensityRelTimeCam.h"
120	#include "MCalibrationIntensityQECam.h"
121
122	#include "MCalibrationPatternDecode.h"
123	#include "MCalibrationCam.h"
124	#include "MCalibrationHiLoCam.h"
125	#include "MCalibrationHiLoPix.h"
126	#include "MCalibrationQECam.h"
127	#include "MCalibrationQEPix.h"
128	#include "MCalibrationChargeCam.h"
129	#include "MCalibrationChargePix.h"
130	#include "MCalibrationChargePINDiode.h"
131	#include "MCalibrationBlindPix.h"
132	#include "MCalibrationBlindCam.h"
133	#include "MCalibrationBlindCamOneOldStyle.h"
134	#include "MCalibrationBlindCamTwoNewStyle.h"
135	#include "MCalibrationBlindCamThreeNewStyle.h"
136	#include "MCalibrationChargeCalc.h"
137	#include "MCalibColorSet.h"
138	#include "MCalibrationRelTimeCam.h"
139	#include "MCalibrationRelTimeCalc.h"
140
141	#include "MHGausEvents.h"
142	#include "MHCalibrationCam.h"
143	#include "MHCalibrationChargeCam.h"
144	#include "MHCalibrationChargeBlindCam.h"
145	#include "MHCalibrationChargePINDiode.h"
146	#include "MHCalibrationRelTimeCam.h"
147	#include "MHCalibrationPix.h"
148
149	#include "MReadMarsFile.h"
150	#include "MPedCalcPedRun.h"
151	#include "MRawFileRead.h"
152	#include "MGeomApply.h"
153	#include "MTaskEnv.h"
154	#include "MBadPixelsMerge.h"
155	#include "MBadPixelsCam.h"
156	#include "MExtractTime.h"
157	#include "MExtractor.h"
158	#include "MExtractPINDiode.h"
159	#include "MExtractBlindPixel.h"
160	#include "MExtractSlidingWindow.h"
161	#include "MExtractTimeHighestIntegral.h"
162	#include "MFCosmics.h"
163	#include "MContinue.h"
164	#include "MFillH.h"
165
166	#include "MArrivalTimeCam.h"
167
168	#include "MStatusDisplay.h"
169
170	ClassImp(MJCalibration);
171
172	using namespace std;
173
174	const Int_t MJCalibration::gkIFAEBoxInaugurationRun = 20113;
175	const Int_t MJCalibration::gkSecondBlindPixelInstallation = 31693;
176	const Int_t MJCalibration::gkSpecialPixelsContInstallation = 34057;
177	const Int_t MJCalibration::gkThirdBlindPixelInstallation = 43308;
178	const TString MJCalibration::fgReferenceFile = "mjobs/calibrationref.rc";
179	const TString MJCalibration::fgHiLoCalibFile = "mjobs/hilocalib_df6.root";
180	// --------------------------------------------------------------------------
181	//
182	// Default constructor.
183	//
184	// - Sets fRuns to 0, fExtractor to NULL, fTimeExtractor to NULL, fColor to kNONE,
185	// fDisplay to kNormalDisplay, kRelTimes to kFALSE, kataCheck to kFALSE, kDebug to kFALSE,
186	// kIntensity to kFALSE
187	// - SetUseBlindPixel()
188	// - SetUsePINDiode()
189	//
190	MJCalibration::MJCalibration(const char name, const char title)
191	: fExtractor(NULL), fTimeExtractor(NULL),
192	fColor(MCalibrationCam::kNONE), fDisplayType(kDataCheckDisplay),
193	fGeometry("MGeomCamMagic")
194	{
195
196	fName = name ? name : "MJCalibration";
197	fTitle = title ? title : "Tool to create the calibration constants for one calibration run";
198
199	SetUseBlindPixel();
200	SetUsePINDiode();
201
202	SetRelTimeCalibration();
203	SetDebug(kFALSE);
204	SetIntensity(kFALSE);
205
206	SetReferenceFile();
207	SetHiLoCalibFile();
208
209	fConvFADC2PheMin = 0.;
210	fConvFADC2PheMax = 1.5;
211	fConvFADC2PhotMin = 0.;
212	fConvFADC2PhotMax = 10.;
213	fQEMin = 0.;
214	fQEMax = 0.3;
215	fArrivalTimeMin = 1.;
216	fArrivalTimeMax = 10.;
217	fTimeOffsetMin = -3.;
218	fTimeOffsetMax = 3.;
219	fTimeResolutionMin = 0.;
220	fTimeResolutionMax = 1.;
221
222	fRefConvFADC2PheInner = 0.14;
223	fRefConvFADC2PheOuter = 0.4;
224	fRefConvFADC2PhotInner = 0.8;
225	fRefConvFADC2PhotOuter = 3.8;
226	fRefQEInner = 0.18;
227	fRefQEOuter = 0.12;
228	fRefArrivalTimeInner = 4.5;
229	fRefArrivalTimeOuter = 5.0;
230	fRefArrivalTimeRmsInner = 0.5;
231	fRefArrivalTimeRmsOuter = 0.5;
232	fRefTimeOffsetInner = -0.23;
233	fRefTimeOffsetOuter = 0.39;
234	fRefTimeResolutionInner = 0.153;
235	fRefTimeResolutionOuter = 0.128;
236
237	}
238
239	void MJCalibration::DrawTab(MParList &plist, const char cont, const char name, Option_t *opt)
240	{
241	TObject *obj = plist.FindObject(cont);
242	if (!obj)
243	return;
244
245	fDisplay->AddTab(name);
246	obj->DrawClone(opt);
247	}
248
249	// --------------------------------------------------------------------------
250	//
251	// Display the results in MStatusDisplay:
252	//
253	// - Add "Calibration" to the MStatusDisplay title
254	// - Retrieve the MGeomCam from MParList
255	// - Initialize the following MHCamera's:
256	// 1) MCalibrationPix::GetMean()
257	// 2) MCalibrationPix::Sigma()
258	// 3) MCalibrationChargePix::GetRSigma()
259	// 4) MCalibrationChargePix::GetRSigmaPerCharge()
260	// 5) MCalibrationChargePix::GetPheFFactorMethod()
261	// 6) MCalibrationChargePix::GetMeanConvFADC2Phe()
262	// 7) MCalibrationChargePix::GetMeanFFactorFADC2Phot()
263	// 8) MCalibrationQEPix::GetQECascadesFFactor()
264	// 9) MCalibrationQEPix::GetQECascadesBlindPixel()
265	// 10) MCalibrationQEPix::GetQECascadesPINDiode()
266	// 11) MCalibrationQEPix::GetQECascadesCombined()
267	// 12) MCalibrationQEPix::IsAverageQEFFactorAvailable()
268	// 13) MCalibrationQEPix::IsAverageQEBlindPixelAvailable()
269	// 14) MCalibrationQEPix::IsAverageQEPINDiodeAvailable()
270	// 15) MCalibrationQEPix::IsAverageQECombinedAvailable()
271	// 16) MCalibrationChargePix::IsHiGainSaturation()
272	// 17) MCalibrationPix::GetHiLoMeansDivided()
273	// 18) MCalibrationPix::GetHiLoSigmasDivided()
274	// 19) MCalibrationChargePix::GetHiGainPickup()
275	// 20) MCalibrationChargePix::GetLoGainPickup()
276	// 21) MCalibrationChargePix::GetHiGainBlackout()
277	// 22) MCalibrationChargePix::GetLoGainBlackout()
278	// 23) MCalibrationPix::IsExcluded()
279	// 24) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnsuitableRun)
280	// 25) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnreliableRun)
281	// 26) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kHiGainOscillating)
282	// 27) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kLoGainOscillating)
283	// 28) MCalibrationChargePix::GetAbsTimeMean()
284	// 29) MCalibrationChargePix::GetAbsTimeRms()
285	//
286	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
287	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
288	// and otherwise, (default: SetNormalDisplay()), a good selection of plots is given
289	//
290	void MJCalibration::DisplayResult(MParList &plist)
291	{
292	if (!fDisplay)
293	return;
294
295	TString drawoption = "nonew ";
296	if (fDisplayType == kDataCheckDisplay)
297	drawoption += "datacheck";
298	if (fDisplayType == kFullDisplay)
299	drawoption += "all";
300
301	if (IsUsePINDiode())
302	DrawTab(plist, "MHCalibrationChargePINDiode", "PINDiode", drawoption);
303	if (IsUseBlindPixel())
304	DrawTab(plist, "MHCalibrationChargeBlindCam", "BlindPix", drawoption);
305	if (IsRelTimes())
306	DrawTab(plist, "MHCalibrationRelTimeCam", "Time", drawoption);
307	DrawTab(plist, "MHCalibrationChargeCam", "Charge", drawoption);
308
309	//
310	// Update display
311	//
312	TString title = fDisplay->GetTitle();
313	title += "-- Calibration ";
314	title += fSequence.IsValid() ? Form("calib%08d", fSequence.GetSequence()) : (const char*)fRuns->GetRunsAsString();
315	title += " --";
316	fDisplay->SetTitle(title);
317
318	//
319	// Get container from list
320	//
321	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
322
323	// Create histograms to display
324	MHCamera disp1 (geomcam, "Charge", "Fitted Mean Signal (Charges)");
325	MHCamera disp2 (geomcam, "SigmaCharge", "Sigma of Fitted Signal");
326	MHCamera disp3 (geomcam, "RSigma", "Reduced Sigmas");
327	MHCamera disp4 (geomcam, "RSigmaPerCharge", "Reduced Sigma per Charge");
328	MHCamera disp5 (geomcam, "NumPhes", "Number Photo-electrons");
329	MHCamera disp6 (geomcam, "ConvFADC2Phes", "Conversion Factor to Phes");
330	MHCamera disp7 (geomcam, "TotalFFactor", "Total F-Factor(F-Factor Method)");
331	MHCamera disp8 (geomcam, "CascadesQEFFactor", "Cascades QE (F-Factor Method)");
332	MHCamera disp9 (geomcam, "CascadesQEBlindPix","Cascades QE (Blind Pixel Method)");
333	MHCamera disp10(geomcam, "CascadesQEPINDiode","Cascades QE (PIN Diode Method)");
334	MHCamera disp11(geomcam, "CascadesQECombined","Cascades QE (Combined Method)");
335	MHCamera disp12(geomcam, "FFactorValid", "Pixels with valid F-Factor calibration");
336	MHCamera disp13(geomcam, "BlindPixelValid", "Pixels with valid BlindPixel calibration");
337	MHCamera disp14(geomcam, "PINdiodeValid", "Pixels with valid PINDiode calibration");
338	MHCamera disp15(geomcam, "CombinedValid", "Pixels with valid Combined calibration");
339	MHCamera disp16(geomcam, "Saturation", "Pixels with saturated Hi Gain");
340	MHCamera disp17(geomcam, "ConversionMeans", "Conversion HiGain.vs.LoGain Means");
341	MHCamera disp18(geomcam, "ConversionSigmas", "Conversion HiGain.vs.LoGain Sigmas");
342	MHCamera disp19(geomcam, "HiGainPickup", "Number Pickup events Hi Gain");
343	MHCamera disp20(geomcam, "LoGainPickup", "Number Pickup events Lo Gain");
344	MHCamera disp21(geomcam, "HiGainBlackout", "Number Blackout events Hi Gain");
345	MHCamera disp22(geomcam, "LoGainBlackout", "Number Blackout events Lo Gain");
346	MHCamera disp23(geomcam, "Excluded", "Pixels previously excluded");
347	MHCamera disp24(geomcam, "UnSuitable", "Pixels not suited for further analysis");
348	MHCamera disp25(geomcam, "UnReliable", "Pixels suitable, but not reliable for further analysis");
349	MHCamera disp26(geomcam, "HiGainOscillating", "Oscillating Pixels High Gain");
350	MHCamera disp27(geomcam, "LoGainOscillating", "Oscillating Pixels Low Gain");
351	MHCamera disp28(geomcam, "AbsTimeMean", "Abs. Arrival Times");
352	MHCamera disp29(geomcam, "AbsTimeRms", "RMS of Arrival Times");
353	MHCamera disp30(geomcam, "MeanTime", "Mean Rel. Arrival Times");
354	MHCamera disp31(geomcam, "SigmaTime", "Sigma Rel. Arrival Times");
355	MHCamera disp32(geomcam, "TimeProb", "Probability of Time Fit");
356	MHCamera disp33(geomcam, "TimeNotFitValid", "Pixels with not valid fit results");
357	MHCamera disp34(geomcam, "TimeOscillating", "Oscillating Pixels");
358	MHCamera disp35(geomcam, "TotalConv", "Conversion Factor to photons");
359	MHCamera disp36(geomcam, "RMSperMean", "Charge histogram RMS per Mean");
360
361	MCalibrationChargeCam *cam = NULL;
362	MCalibrationQECam *qecam = NULL;
363	MCalibrationRelTimeCam *relcam = NULL;
364	MBadPixelsCam *badcam = NULL;
365
366	if (IsIntensity())
367	{
368	cam = (MCalibrationChargeCam*) fIntensCalibCam.GetCam();
369	qecam = (MCalibrationQECam*) fIntensQECam.GetCam();
370	relcam = (MCalibrationRelTimeCam*)fIntensRelTimeCam.GetCam();
371	badcam = (MBadPixelsCam*) fIntensBadCam.GetCam();
372	}
373	else
374	{
375	cam = &fCalibrationCam;
376	qecam = &fQECam;
377	relcam = &fRelTimeCam;
378	badcam = &fBadPixels;
379	}
380
381	// Fitted charge means and sigmas
382	disp1.SetCamContent(*cam, 0);
383	disp1.SetCamError( *cam, 1);
384	disp2.SetCamContent(*cam, 2);
385	disp2.SetCamError( *cam, 3);
386
387	// Reduced Sigmas and reduced sigmas per charge
388	disp3.SetCamContent(*cam, 5);
389	disp3.SetCamError( *cam, 6);
390	disp4.SetCamContent(*cam, 7);
391	disp4.SetCamError( *cam, 8);
392
393	// F-Factor Method
394	disp5.SetCamContent(*cam, 9);
395	disp5.SetCamError( *cam, 10);
396	disp6.SetCamContent(*cam, 11);
397	disp6.SetCamError( *cam, 12);
398	disp7.SetCamContent(*cam, 13);
399	disp7.SetCamError( *cam, 14);
400
401	// Quantum Efficiencies
402	disp8.SetCamContent (*qecam, 0 );
403	disp8.SetCamError (*qecam, 1 );
404	disp9.SetCamContent (*qecam, 2 );
405	disp9.SetCamError (*qecam, 3 );
406	disp10.SetCamContent(*qecam, 4 );
407	disp10.SetCamError (*qecam, 5 );
408	disp11.SetCamContent(*qecam, 6 );
409	disp11.SetCamError (*qecam, 7 );
410
411	// Valid flags
412	disp12.SetCamContent(*qecam, 8 );
413	disp13.SetCamContent(*qecam, 9 );
414	disp14.SetCamContent(*qecam, 10);
415	disp15.SetCamContent(*qecam, 11);
416
417	// Conversion Hi-Lo
418	disp16.SetCamContent(*cam, 25);
419	disp17.SetCamContent(*cam, 16);
420	disp17.SetCamError (*cam, 17);
421	disp18.SetCamContent(*cam, 18);
422	disp18.SetCamError (*cam, 19);
423
424	// Pickup and Blackout
425	disp19.SetCamContent(*cam, 21);
426	disp20.SetCamContent(*cam, 22);
427	disp21.SetCamContent(*cam, 23);
428	disp22.SetCamContent(*cam, 24);
429
430	// Pixels with defects
431	disp23.SetCamContent(*cam, 20);
432	disp24.SetCamContent(*badcam, 6);
433	disp25.SetCamContent(*badcam, 7);
434
435	// Oscillations
436	disp26.SetCamContent(*badcam, 10);
437	disp27.SetCamContent(*badcam, 11);
438
439	// Arrival Times
440	disp28.SetCamContent(*cam, 26);
441	disp28.SetCamError( *cam, 27);
442	disp29.SetCamContent(*cam, 27);
443
444	// RMS and Mean
445	disp36.SetCamContent(*cam,32);
446
447	disp1.SetYTitle("Q [FADC cnts]");
448	disp2.SetYTitle("\\sigma_{Q} [FADC cnts]");
449
450	disp3.SetYTitle("\\sqrt{\\sigma^{2}_{Q} - RMS^{2}_{Ped}} [FADC cnts]");
451	disp4.SetYTitle("Red.Sigma/<Q> [1]");
452
453	disp5.SetYTitle("Photo-electons [1]");
454	disp6.SetYTitle("Conv.Factor [PhE/FADC cnts]");
455	disp7.SetYTitle("Total F-Factor [1]");
456
457	disp8.SetYTitle("QE [1]");
458	disp9.SetYTitle("QE [1]");
459	disp10.SetYTitle("QE [1]");
460	disp11.SetYTitle("QE [1]");
461
462	disp12.SetYTitle("[1]");
463	disp13.SetYTitle("[1]");
464	disp14.SetYTitle("[1]");
465	disp15.SetYTitle("[1]");
466	disp16.SetYTitle("[1]");
467
468	disp17.SetYTitle("<Q>(High)/<Q>(Low) [1]");
469	disp18.SetYTitle("\\sigma_{Q}(High)/\\sigma_{Q}(Low) [1]");
470
471	disp19.SetYTitle("[1]");
472	disp20.SetYTitle("[1]");
473	disp21.SetYTitle("[1]");
474	disp22.SetYTitle("[1]");
475	// disp23.SetYTitle("[1]");
476	// disp24.SetYTitle("[1]");
477	// disp25.SetYTitle("[1]");
478	disp26.SetYTitle("[1]");
479	disp27.SetYTitle("[1]");
480
481	disp28.SetYTitle("Mean Abs. Time [FADC sl.]");
482	disp29.SetYTitle("RMS Abs. Time [FADC sl.]");
483
484	disp35.SetYTitle("Conv.Factor [Ph/FADC cnts]");
485
486	disp36.SetYTitle("Charge RMS/<Q> [1]");
487
488	for (UInt_t i=0;i<geomcam.GetNumPixels();i++)
489	{
490
491	MCalibrationChargePix &pix = (MCalibrationChargePix&)(*cam) [i];
492	MCalibrationQEPix &qe = (MCalibrationQEPix&) (*qecam)[i];
493
494	if (!pix.IsFFactorMethodValid())
495	continue;
496
497	const Float_t convphe = pix.GetMeanConvFADC2Phe();
498	const Float_t quaeff = qe.GetQECascadesFFactor(0.);
499
500	disp35.Fill(i,convphe/quaeff);
501	disp35.SetUsed(i);
502	}
503
504
505	if (IsRelTimes())
506	{
507	disp30.SetCamContent(*relcam,0);
508	disp30.SetCamError( *relcam,1);
509	disp31.SetCamContent(*relcam,2);
510	disp31.SetCamError( *relcam,3);
511	disp32.SetCamContent(*relcam,4);
512	disp33.SetCamContent(fBadPixels,20);
513	disp34.SetCamContent(fBadPixels,21);
514
515	disp30.SetYTitle("Time Offset [FADC units]");
516	disp31.SetYTitle("Timing resolution [FADC units]");
517	disp32.SetYTitle("P_{Time} [1]");
518	disp33.SetYTitle("[1]");
519	disp34.SetYTitle("[1]");
520	}
521
522	if (fDisplayType == kDataCheckDisplay)
523	{
524
525	TCanvas &c1 = fDisplay->AddTab("FitCharge");
526	c1.Divide(3, 3);
527
528	//
529	// MEAN CHARGES
530	//
531
532	c1.cd(1);
533	gPad->SetBorderMode(0);
534	gPad->SetTicks();
535	MHCamera obj1=(MHCamera)disp1.DrawCopy("hist");
536	//
537	// for the datacheck, fix the ranges!!
538	//
539	// obj1->SetMinimum(fChargeMin);
540	// obj1->SetMaximum(fChargeMax);
541	//
542	// Set the datacheck sizes:
543	//
544	FixDataCheckHist((TH1D*)obj1);
545	obj1->SetStats(kFALSE);
546	//
547	// set reference lines
548	//
549	// DisplayReferenceLines(obj1,0);
550
551	c1.cd(4);
552	gPad->SetBorderMode(0);
553	obj1->SetPrettyPalette();
554	obj1->Draw();
555
556	c1.cd(7);
557	gPad->SetBorderMode(0);
558	gPad->SetTicks();
559	TH1D obj2 = (TH1D)obj1->Projection(obj1->GetName());
560	obj2->Draw();
561	obj2->SetBit(kCanDelete);
562	obj2->Fit("gaus","Q");
563	TF1 *fun2 = obj2->GetFunction("gaus");
564	fun2->SetLineColor(kYellow);
565	gPad->Modified();
566	gPad->Update();
567	TPaveStats st = (TPaveStats)obj2->GetListOfFunctions()->FindObject("stats");
568	st->SetY1NDC(0.55);
569	st->SetY2NDC(0.89);
570	st->SetX1NDC(0.65);
571	st->SetX2NDC(0.99);
572	gPad->Modified();
573	gPad->Update();
574	//
575	// Set the datacheck sizes:
576	//
577	FixDataCheckHist(obj2);
578	obj2->SetStats(1);
579
580	//
581	// Display the outliers as dead and noisy pixels
582	//
583	DisplayOutliers(obj2,"low-ampl.","high-ampl.");
584	TLatex flattex;
585	flattex.SetTextSize(0.07);
586	const Double_t minl = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
587	const Double_t maxl = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
588	flattex.DrawLatex(minl+0.015*(maxl-minl),obj2->GetBinContent(obj2->GetMaximumBin())/1.35,
589	Form("Flatfield precision: %4.2f%%",
590	fun2->GetParameter(2)/fun2->GetParameter(1)*100.));
591
592	//
593	// RMS per Charge
594	//
595
596	c1.cd(2);
597	gPad->SetBorderMode(0);
598	gPad->SetTicks();
599	MHCamera obj3=(MHCamera)disp36.DrawCopy("hist");
600	//
601	// for the datacheck, fix the ranges!!
602	//
603	// obj3->SetMinimum(0.);
604	// obj3->SetMaximum(fChargeMax);
605	//
606	// Set the datacheck sizes:
607	//
608	FixDataCheckHist((TH1D*)obj3);
609	obj3->SetStats(kFALSE);
610	//
611	// set reference lines
612	//
613	// DisplayReferenceLines(obj3,0);
614
615	c1.cd(5);
616	gPad->SetBorderMode(0);
617	obj3->SetPrettyPalette();
618	obj3->Draw();
619
620	c1.cd(8);
621	gPad->SetBorderMode(0);
622	if (geomcam.InheritsFrom("MGeomCamMagic"))
623	DisplayDoubleProject(&disp36, "dead", "noisy");
624
625	//
626	// PHOTO ELECTRONS
627	//
628
629	c1.cd(3);
630	gPad->SetBorderMode(0);
631	gPad->SetTicks();
632	MHCamera obj4=(MHCamera)disp5.DrawCopy("hist");
633	//
634	// for the datacheck, fix the ranges!!
635	//
636	// obj3->SetMinimum(fChargeMin);
637	// obj3->SetMaximum(fChargeMax);
638	//
639	// Set the datacheck sizes:
640	//
641	FixDataCheckHist((TH1D*)obj4);
642	obj4->SetStats(kFALSE);
643	//
644	// set reference lines
645	//
646	// DisplayReferenceLines(obj3,0);
647
648	c1.cd(6);
649	gPad->SetBorderMode(0);
650	obj4->SetPrettyPalette();
651	obj4->Draw();
652
653	c1.cd(9);
654	gPad->SetBorderMode(0);
655	if (geomcam.InheritsFrom("MGeomCamMagic"))
656	DisplayDoubleProject(&disp5, "dead", "noisy");
657
658	//
659	// CONVERSION FACTORS
660	//
661	TCanvas &c2 = fDisplay->AddTab("Conversion");
662	c2.Divide(3,3);
663
664	c2.cd(1);
665	gPad->SetBorderMode(0);
666	gPad->SetTicks();
667	MHCamera obj5=(MHCamera)disp6.DrawCopy("hist");
668	//
669	// for the datacheck, fix the ranges!!
670	//
671	obj5->SetMinimum(fConvFADC2PheMin);
672	obj5->SetMaximum(fConvFADC2PheMax);
673	//
674	// Set the datacheck sizes:
675	//
676	FixDataCheckHist((TH1D*)obj5);
677	obj5->SetStats(kFALSE);
678	//
679	// set reference lines
680	//
681	DisplayReferenceLines(obj5,2);
682
683	c2.cd(4);
684	gPad->SetBorderMode(0);
685	obj5->SetPrettyPalette();
686	obj5->Draw();
687
688	c2.cd(7);
689	gPad->SetBorderMode(0);
690	if (geomcam.InheritsFrom("MGeomCamMagic"))
691	DisplayDoubleProject(&disp6, "noisy", "dead");
692
693	//
694	// QUANTUM EFFICIENCY
695	//
696	c2.cd(2);
697	gPad->SetBorderMode(0);
698	gPad->SetTicks();
699	MHCamera obj6=(MHCamera)disp8.DrawCopy("hist");
700	//
701	// for the datacheck, fix the ranges!!
702	//
703	obj6->SetMinimum(fQEMin);
704	obj6->SetMaximum(fQEMax);
705	//
706	// Set the datacheck sizes:
707	//
708	FixDataCheckHist((TH1D*)obj6);
709	obj6->SetStats(kFALSE);
710	//
711	// set reference lines
712	//
713	DisplayReferenceLines(obj6,0);
714
715	c2.cd(5);
716	gPad->SetBorderMode(0);
717	obj6->SetPrettyPalette();
718	obj6->Draw();
719
720	c2.cd(8);
721	gPad->SetBorderMode(0);
722	if (geomcam.InheritsFrom("MGeomCamMagic"))
723	DisplayDoubleProject(&disp8, "noisy", "dead");
724
725	//
726	// CONVERSION FADC TO PHOTONS
727	//
728
729	c2.cd(3);
730	gPad->SetBorderMode(0);
731	gPad->SetTicks();
732	MHCamera obj7=(MHCamera)disp35.DrawCopy("hist");
733	//
734	// for the datacheck, fix the ranges!!
735	//
736	obj7->SetMinimum(fConvFADC2PhotMin);
737	obj7->SetMaximum(fConvFADC2PhotMax);
738	//
739	// Set the datacheck sizes:
740	//
741	FixDataCheckHist((TH1D*)obj7);
742	obj7->SetStats(kFALSE);
743	//
744	// set reference lines
745	//
746	DisplayReferenceLines(obj7,1);
747
748	c2.cd(6);
749	gPad->SetBorderMode(0);
750	obj7->SetPrettyPalette();
751	obj7->Draw();
752	c2.cd(9);
753	gPad->SetBorderMode(0);
754	if (geomcam.InheritsFrom("MGeomCamMagic"))
755	DisplayDoubleProject(&disp35, "noisy", "dead");
756
757	//
758	// ARRIVAL TIMES
759	//
760	TCanvas &c3 = fDisplay->AddTab("AbsTimes");
761	c3.Divide(2,3);
762
763	c3.cd(1);
764	gPad->SetBorderMode(0);
765	gPad->SetTicks();
766	MHCamera obj10=(MHCamera)disp28.DrawCopy("hist");
767	//
768	// for the datacheck, fix the ranges!!
769	//
770	obj10->SetMinimum(fArrivalTimeMin);
771	obj10->SetMaximum(fArrivalTimeMax);
772	//
773	// Set the datacheck sizes:
774	//
775	FixDataCheckHist((TH1D*)obj10);
776	obj10->SetStats(kFALSE);
777	//
778	// set reference lines
779	//
780	DisplayReferenceLines(obj10,3);
781
782	c3.cd(3);
783	gPad->SetBorderMode(0);
784	obj10->SetPrettyPalette();
785	obj10->Draw();
786
787	c3.cd(5);
788	gPad->SetBorderMode(0);
789	if (geomcam.InheritsFrom("MGeomCamMagic"))
790	DisplayDoubleProject(&disp28, "early", "late");
791
792	//
793	// ARRIVAL TIMES JITTER
794	//
795	c3.cd(2);
796	gPad->SetBorderMode(0);
797	gPad->SetTicks();
798	MHCamera obj11=(MHCamera)disp29.DrawCopy("hist");
799	//
800	// for the datacheck, fix the ranges!!
801	//
802	// obj11->SetMinimum(fArrivalTimeMin);
803	// obj11->SetMaximum(fArrivalTimeMax);
804	//
805	// Set the datacheck sizes:
806	//
807	FixDataCheckHist((TH1D*)obj11);
808	obj11->SetStats(kFALSE);
809	//
810	// set reference lines
811	//
812	DisplayReferenceLines(obj11,4);
813
814	c3.cd(4);
815	gPad->SetBorderMode(0);
816	obj11->SetPrettyPalette();
817	obj11->Draw();
818
819	c3.cd(6);
820	gPad->SetBorderMode(0);
821	if (geomcam.InheritsFrom("MGeomCamMagic"))
822	DisplayDoubleProject(&disp29, "", "jittering");
823
824	//
825	// UNSUITABLE PIXELS
826	//
827	TCanvas &c4 = fDisplay->AddTab("Defect");
828	c4.Divide(2,2);
829
830	c4.cd(1);
831	gPad->SetBorderMode(0);
832	gPad->SetTicks();
833	MHCamera obj8=(MHCamera)disp24.DrawCopy("hist");
834	//
835	// for the datacheck, fix the ranges!!
836	//
837	const Double_t max = 11.;
838	obj8->SetMinimum(0.);
839	obj8->SetMaximum(11.);
840	//
841	// Set the datacheck sizes:
842	//
843	FixDataCheckHist((TH1D*)obj8);
844	obj8->SetStats(kFALSE);
845
846	gStyle->SetPalette(1);
847	const Int_t numcol = gStyle->GetNumberOfColors()-3;
848
849	TPaveText *pave = new TPaveText(0.0,0.0,0.99,0.99);
850	pave->SetBit(kCanDelete);
851	pave->ConvertNDCtoPad();
852	pave->SetTextSize(0.05);
853	pave->AddText(" ");
854	TText *t1 = pave->AddText(Form("Signal smaller 3 Pedestal RMS: %3i pixels",
855	CountBadPixels(&disp24,1)));
856	t1->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol + 1.)));
857	t1->SetTextAlign(12);
858	TText *t2 = pave->AddText(Form("%s%3i%s","Signal Rel. error too large: ",
859	CountBadPixels(&disp24,2)," pixels"));
860	t2->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol + 1.)));
861	t2->SetTextAlign(12);
862	TText *t4 = pave->AddText(Form("Low Gain Saturation: %3i pixels",
863	CountBadPixels(&disp24,3)));
864	t4->SetTextColor(gStyle->GetColorPalette(Int_t(3./max*numcol + 1.)));
865	t4->SetTextAlign(12);
866	TText *t5 = pave->AddText(Form("Mean Arr. Time In First Extraction Bin: %3i pixels",
867	CountBadPixels(&disp24,4)));
868	t5->SetTextColor(gStyle->GetColorPalette(Int_t(4./max*numcol + 1.)));
869	t5->SetTextAlign(12);
870	TText *t6 = pave->AddText(Form("Mean Arr. Time In Last 2 Extraction Bins: %3i pixels",
871	CountBadPixels(&disp24,5)));
872	t6->SetTextColor(gStyle->GetColorPalette(Int_t(5./max*numcol + 1.)));
873	t6->SetTextAlign(12);
874	TText *t9 = pave->AddText(Form("Deviating Number of Photons: %3i pixels",
875	CountBadPixels(&disp24,6)));
876	t9->SetTextColor(gStyle->GetColorPalette(Int_t(6./max*numcol + 1.)));
877	t9->SetTextAlign(12);
878	TText *t10= pave->AddText(Form("High-Gain Histogram Overflow: %3i pixels",
879	CountBadPixels(&disp24,7 )));
880	t10->SetTextColor(gStyle->GetColorPalette(Int_t(7./max*numcol + 1.)));
881	t10->SetTextAlign(12);
882	TText *t11= pave->AddText(Form("Low-Gain Histogram Overflow: %3i pixels",
883	CountBadPixels(&disp24,8 )));
884	t11->SetTextColor(gStyle->GetColorPalette(Int_t(8./max*numcol + 1.)));
885	t11->SetTextAlign(12);
886	TText *t12= pave->AddText(Form("Previously Excluded: %3i pixels",
887	CountBadPixels(&disp24,9)));
888	t12->SetTextColor(gStyle->GetColorPalette(Int_t(9./max*numcol + 1.)));
889	t12->SetTextAlign(12);
890	pave->Draw();
891
892	c4.cd(3);
893	gPad->SetBorderMode(0);
894	obj8->Draw();
895	obj8->SetPrettyPalette();
896
897	//
898	// UNRELIABLE PIXELS
899	//
900
901	c4.cd(2);
902	gPad->SetBorderMode(0);
903	gPad->SetTicks();
904	MHCamera obj9=(MHCamera)disp25.DrawCopy("hist");
905	//
906	// for the datacheck, fix the ranges!!
907	//
908	const Double_t max2 = 8.;
909	obj9->SetMinimum(0.);
910	obj9->SetMaximum(max2);
911	//
912	// Set the datacheck sizes:
913	//
914	FixDataCheckHist((TH1D*)obj9);
915	obj9->SetStats(kFALSE);
916
917	gStyle->SetPalette(1);
918
919	TPaveText *pave2 = new TPaveText(0.0,0.0,0.99,0.99);
920	pave2->SetBit(kCanDelete);
921	pave2->ConvertNDCtoPad();
922	pave2->SetTextSize(0.05);
923	pave2->AddText(" ");
924	TText *t3 = pave2->AddText(Form("Signal Sigma smaller Pedestal RMS: %3i pixels",
925	CountBadPixels(&disp25,1)));
926	t3->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol + 1.)));
927	t3->SetTextAlign(12);
928
929	TText *t7 = pave2->AddText(Form("Deviating Number of Photo-electrons: %3i pixels",
930	CountBadPixels(&disp25,2)));
931	t7->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol + 1.)));
932	t7->SetTextAlign(12);
933
934	TText *tt1 = pave2->AddText(Form("High Gain Signals could not be fitted: %3i pixels",
935	CountBadPixels(&disp25,3)));
936	tt1->SetTextColor(gStyle->GetColorPalette(Int_t(3./max2*numcol + 1.)));
937	tt1->SetTextAlign(12);
938	TText *tt2 = pave2->AddText(Form("Low Gain Signals could not be fitted: %3i pixels",
939	CountBadPixels(&disp25,4)));
940	tt2->SetTextColor(gStyle->GetColorPalette(Int_t(4./max2*numcol + 1.)));
941	tt2->SetTextAlign(12);
942	TText *tt3 = pave2->AddText(Form("Relative Arr. Times could not be fitted: %3i pixels",
943	CountBadPixels(&disp25,5)));
944	tt3->SetTextColor(gStyle->GetColorPalette(Int_t(5./max2*numcol + 1.)));
945	tt3->SetTextAlign(12);
946	TText *tt4 = pave2->AddText(Form("High Gain Signals Oscillation: %3i pixels",
947	CountBadPixels(&disp25,6)));
948	tt4->SetTextColor(gStyle->GetColorPalette(Int_t(6./max2*numcol + 1.)));
949	tt4->SetTextAlign(12);
950	TText *tt5 = pave2->AddText(Form("Low Gain Signals Oscillation: %3i pixels",
951	CountBadPixels(&disp25,7)));
952	tt5->SetTextColor(gStyle->GetColorPalette(Int_t(7./max2*numcol + 1.)));
953	tt5->SetTextAlign(12);
954	TText *tt6 = pave2->AddText(Form("Relative Arr. Times Oscillation: %3i pixels",
955	CountBadPixels(&disp25,8)));
956	tt6->SetTextColor(gStyle->GetColorPalette(Int_t(8./max2*numcol + 1.)));
957	tt6->SetTextAlign(12);
958	TText *tt8 = pave2->AddText(Form("Deviating global F-Factor: %3i pixels",
959	CountBadPixels(&disp25,9)));
960	tt8->SetTextColor(gStyle->GetColorPalette(Int_t(9./max2*numcol + 1.)));
961	tt8->SetTextAlign(12);
962	pave2->Draw();
963
964	c4.cd(4);
965	gPad->SetBorderMode(0);
966	obj9->SetPrettyPalette();
967	obj9->Draw();
968
969	if (IsRelTimes())
970	{
971	TCanvas &c5 = fDisplay->AddTab("RelTimes");
972	c5.Divide(2,3);
973
974	//
975	// MEAN REL. ARR. TIMES
976	//
977	c5.cd(1);
978	gPad->SetBorderMode(0);
979	gPad->SetTicks();
980	MHCamera obj10=(MHCamera)disp30.DrawCopy("hist");
981	//
982	// for the datacheck, fix the ranges!!
983	//
984	obj10->SetMinimum(fTimeOffsetMin);
985	obj10->SetMaximum(fTimeOffsetMax);
986	//
987	// Set the datacheck sizes:
988	//
989	FixDataCheckHist((TH1D*)obj10);
990	obj10->SetStats(kFALSE);
991	//
992	// set reference lines
993	//
994	DisplayReferenceLines(obj10,5);
995
996	c5.cd(3);
997	gPad->SetBorderMode(0);
998	obj10->SetPrettyPalette();
999	obj10->Draw();
1000
1001	c5.cd(5);
1002	gPad->SetBorderMode(0);
1003	if (geomcam.InheritsFrom("MGeomCamMagic"))
1004	DisplayDoubleProject(&disp30, "early", "late");
1005
1006	//
1007	// JITTER Rel. Arr. Times
1008	//
1009	c5.cd(2);
1010	gPad->SetBorderMode(0);
1011	gPad->SetTicks();
1012	MHCamera obj11=(MHCamera)disp31.DrawCopy("hist");
1013	//
1014	// for the datacheck, fix the ranges!!
1015	//
1016	obj11->SetMinimum(fTimeResolutionMin);
1017	obj11->SetMaximum(fTimeResolutionMax);
1018	//
1019	// Set the datacheck sizes:
1020	//
1021	FixDataCheckHist((TH1D*)obj11);
1022	obj11->SetStats(kFALSE);
1023	//
1024	// set reference lines
1025	//
1026	DisplayReferenceLines(obj11,6);
1027
1028	c5.cd(4);
1029	gPad->SetBorderMode(0);
1030	obj11->SetPrettyPalette();
1031	obj11->Draw();
1032
1033	c5.cd(6);
1034	gPad->SetBorderMode(0);
1035	if (geomcam.InheritsFrom("MGeomCamMagic"))
1036	DisplayDoubleProject(&disp31, "too stable", "jittering");
1037
1038	}
1039	return;
1040	}
1041
1042	if (fDisplayType == kNormalDisplay)
1043	{
1044
1045	// Charges
1046	TCanvas &c11 = fDisplay->AddTab("FitCharge");
1047	c11.Divide(2, 4);
1048
1049	disp1.CamDraw(c11, 1, 2, 5, 1);
1050	disp2.CamDraw(c11, 2, 2, 5, 1);
1051
1052	// Reduced Sigmas
1053	TCanvas &c12 = fDisplay->AddTab("RedSigma");
1054	c12.Divide(2,4);
1055
1056	disp3.CamDraw(c12, 1, 2, 5, 1);
1057	disp4.CamDraw(c12, 2, 2, 5, 1);
1058
1059	// F-Factor
1060	TCanvas &c13 = fDisplay->AddTab("Phe's");
1061	c13.Divide(3,4);
1062
1063	disp5.CamDraw(c13, 1, 3, 5, 1);
1064	disp6.CamDraw(c13, 2, 3, 5, 1);
1065	disp7.CamDraw(c13, 3, 3, 5, 1);
1066
1067	// QE's
1068	TCanvas &c14 = fDisplay->AddTab("QE's");
1069	c14.Divide(4,4);
1070
1071	disp8.CamDraw(c14, 1, 4, 5, 1);
1072	disp9.CamDraw(c14, 2, 4, 5, 1);
1073	disp10.CamDraw(c14, 3, 4, 5, 1);
1074	disp11.CamDraw(c14, 4, 4, 5, 1);
1075
1076	// Defects
1077	TCanvas &c15 = fDisplay->AddTab("Defect");
1078	// c15.Divide(5,2);
1079	c15.Divide(4,2);
1080
1081	/*
1082	disp23.CamDraw(c15, 1, 5, 0);
1083	disp24.CamDraw(c15, 2, 5, 0);
1084	disp25.CamDraw(c15, 3, 5, 0);
1085	disp26.CamDraw(c15, 4, 5, 0);
1086	disp27.CamDraw(c15, 5, 5, 0);
1087	*/
1088	disp24.CamDraw(c15, 1, 4, 0);
1089	disp25.CamDraw(c15, 2, 4, 0);
1090	disp26.CamDraw(c15, 3, 4, 0);
1091	disp27.CamDraw(c15, 4, 4, 0);
1092
1093	// Abs. Times
1094	TCanvas &c16 = fDisplay->AddTab("AbsTimes");
1095	c16.Divide(2,3);
1096
1097	disp28.CamDraw(c16, 1, 2, 5);
1098	disp29.CamDraw(c16, 2, 2, 5);
1099
1100	if (IsRelTimes())
1101	{
1102	// Rel. Times
1103	TCanvas &c17 = fDisplay->AddTab("RelTimes");
1104	c17.Divide(2,4);
1105
1106	disp30.CamDraw(c17, 1, 2, 5, 1);
1107	disp31.CamDraw(c17, 2, 2, 5, 1);
1108	}
1109
1110	return;
1111	}
1112
1113	if (fDisplayType == kFullDisplay)
1114	{
1115	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationChargeCam");
1116
1117	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1118	{
1119	cam->GetAverageHiGainSector(sector).DrawClone("all");
1120	cam->GetAverageLoGainSector(sector).DrawClone("all");
1121	}
1122
1123	// Charges
1124	TCanvas &c21 = fDisplay->AddTab("FitCharge");
1125	c21.Divide(2, 4);
1126
1127	disp1.CamDraw(c21, 1, 2, 2, 1);
1128	disp2.CamDraw(c21, 2, 2, 2, 1);
1129
1130	// Reduced Sigmas
1131	TCanvas &c23 = fDisplay->AddTab("RedSigma");
1132	c23.Divide(2,4);
1133
1134	disp3.CamDraw(c23, 1, 2, 2, 1);
1135	disp4.CamDraw(c23, 2, 2, 2, 1);
1136
1137	// F-Factor
1138	TCanvas &c24 = fDisplay->AddTab("Phe's");
1139	c24.Divide(3,5);
1140
1141	disp5.CamDraw(c24, 1, 3, 2, 1, 1);
1142	disp6.CamDraw(c24, 2, 3, 2, 1, 1);
1143	disp7.CamDraw(c24, 3, 3, 2, 1, 1);
1144
1145	// QE's
1146	TCanvas &c25 = fDisplay->AddTab("QE's");
1147	c25.Divide(4,5);
1148
1149	disp8.CamDraw(c25, 1, 4, 2, 1, 1);
1150	disp9.CamDraw(c25, 2, 4, 2, 1, 1);
1151	disp10.CamDraw(c25, 3, 4, 2, 1, 1);
1152	disp11.CamDraw(c25, 4, 4, 2, 1, 1);
1153
1154	// Validity
1155	TCanvas &c26 = fDisplay->AddTab("Valid");
1156	c26.Divide(4,2);
1157
1158	disp12.CamDraw(c26, 1, 4, 0);
1159	disp13.CamDraw(c26, 2, 4, 0);
1160	disp14.CamDraw(c26, 3, 4, 0);
1161	disp15.CamDraw(c26, 4, 4, 0);
1162
1163	// Other info
1164	TCanvas &c27 = fDisplay->AddTab("HiLoGain");
1165	c27.Divide(3,3);
1166
1167	disp16.CamDraw(c27, 1, 3, 0);
1168	disp17.CamDraw(c27, 2, 3, 1);
1169	disp18.CamDraw(c27, 3, 3, 1);
1170
1171	// Pickup
1172	TCanvas &c28 = fDisplay->AddTab("Pickup");
1173	c28.Divide(4,2);
1174
1175	disp19.CamDraw(c28, 1, 4, 0);
1176	disp20.CamDraw(c28, 2, 4, 0);
1177	disp21.CamDraw(c28, 3, 4, 0);
1178	disp22.CamDraw(c28, 4, 4, 0);
1179
1180	// Defects
1181	TCanvas &c29 = fDisplay->AddTab("Defect");
1182	// c29.Divide(5,2);
1183	c29.Divide(4,2);
1184
1185	disp24.CamDraw(c29, 1, 4, 0);
1186	disp25.CamDraw(c29, 2, 4, 0);
1187	disp26.CamDraw(c29, 3, 4, 0);
1188	disp27.CamDraw(c29, 4, 4, 0);
1189
1190	// Abs. Times
1191	TCanvas &c30 = fDisplay->AddTab("AbsTimes");
1192	c30.Divide(2,3);
1193
1194	disp28.CamDraw(c30, 1, 2, 2);
1195	disp29.CamDraw(c30, 2, 2, 1);
1196
1197	if (IsRelTimes())
1198	{
1199	// Rel. Times
1200	TCanvas &c31 = fDisplay->AddTab("RelTimes");
1201	c31.Divide(3,5);
1202
1203	disp30.CamDraw(c31, 1, 3, 2, 1, 1);
1204	disp31.CamDraw(c31, 2, 3, 2, 1, 1);
1205	disp32.CamDraw(c31, 3, 3, 4, 1, 1);
1206
1207	// Time Defects
1208	TCanvas &c32 = fDisplay->AddTab("DefTime");
1209	c32.Divide(2,2);
1210
1211	disp33.CamDraw(c32, 1, 2, 0);
1212	disp34.CamDraw(c32, 2, 2, 0);
1213
1214	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationRelTimeCam");
1215
1216	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1217	{
1218	cam->GetAverageHiGainSector(sector).DrawClone("fourierevents");
1219	cam->GetAverageLoGainSector(sector).DrawClone("fourierevents");
1220	}
1221
1222	}
1223
1224	return;
1225	}
1226	}
1227
1228
1229	void MJCalibration::DisplayReferenceLines(MHCamera *cam, const Int_t what) const
1230	{
1231
1232	const MGeomCam *geom = cam->GetGeometry();
1233
1234	Double_t x = geom->InheritsFrom("MGeomCamMagic") ? 397 : cam->GetNbinsX() ;
1235
1236	TLine line;
1237	line.SetLineStyle(kDashed);
1238	line.SetLineWidth(3);
1239	line.SetLineColor(kBlue);
1240
1241	TLine *l1 = NULL;
1242
1243	switch (what)
1244	{
1245	case 0:
1246	l1 = line.DrawLine(0, fRefQEInner, x, fRefQEInner);
1247	break;
1248	case 1:
1249	l1 = line.DrawLine(0, fRefConvFADC2PhotInner, x, fRefConvFADC2PhotInner);
1250	break;
1251	case 2:
1252	l1 = line.DrawLine(0, fRefConvFADC2PheInner, x, fRefConvFADC2PheInner );
1253	break;
1254	case 3:
1255	l1 = line.DrawLine(0, fRefArrivalTimeInner, x, fRefArrivalTimeInner );
1256	break;
1257	case 4:
1258	l1 = line.DrawLine(0, fRefArrivalTimeRmsInner, x, fRefArrivalTimeRmsInner );
1259	break;
1260	case 5:
1261	l1 = line.DrawLine(0, fRefTimeOffsetInner, x, fRefTimeOffsetInner );
1262	break;
1263	case 6:
1264	l1 = line.DrawLine(0, fRefTimeResolutionInner, x, fRefTimeResolutionInner );
1265	break;
1266	default:
1267	break;
1268	}
1269
1270	if (geom->InheritsFrom("MGeomCamMagic"))
1271	{
1272	const Double_t x2 = cam->GetNbinsX();
1273
1274	switch (what)
1275	{
1276	case 0:
1277	line.DrawLine(x2, fRefQEOuter, 398, fRefQEOuter);
1278	break;
1279	case 1:
1280	line.DrawLine(x2, fRefConvFADC2PhotOuter, 398, fRefConvFADC2PhotOuter );
1281	break;
1282	case 2:
1283	line.DrawLine(x2, fRefConvFADC2PheOuter, 398, fRefConvFADC2PheOuter);
1284	break;
1285	case 3:
1286	line.DrawLine(x2, fRefArrivalTimeOuter, 398, fRefArrivalTimeOuter);
1287	break;
1288	case 4:
1289	line.DrawLine(x2, fRefArrivalTimeRmsOuter, 398, fRefArrivalTimeRmsOuter);
1290	break;
1291	case 5:
1292	line.DrawLine(x2, fRefTimeOffsetOuter, 398, fRefTimeOffsetOuter);
1293	break;
1294	case 6:
1295	line.DrawLine(x2, fRefTimeResolutionOuter, 398, fRefTimeResolutionOuter);
1296	break;
1297	default:
1298	break;
1299	}
1300	}
1301
1302	TLegend *leg = new TLegend(0.6,0.85,0.9 ,0.95);
1303	leg->SetBit(kCanDelete);
1304	leg->AddEntry(l1, "Reference","l");
1305	leg->Draw();
1306	}
1307
1308	void MJCalibration::DisplayOutliers(TH1D hist, const char whatsmall, const char* whatbig) const
1309	{
1310
1311	const Int_t kNotDraw = 1<<9;
1312	TF1 *f = hist->GetFunction("gaus");
1313	f->ResetBit(kNotDraw);
1314
1315	const Float_t mean = f->GetParameter(1);
1316	const Float_t lolim = mean - 4.0*f->GetParameter(2);
1317	const Float_t uplim = mean + 4.0*f->GetParameter(2);
1318	const Stat_t dead = hist->Integral(0,hist->FindBin(lolim)-1);
1319	const Stat_t noisy = hist->Integral(hist->FindBin(uplim)+1,hist->GetNbinsX()+1);
1320
1321	const Double_t max = hist->GetBinContent(hist->GetMaximumBin());
1322
1323	const Double_t minl = hist->GetBinCenter(hist->GetXaxis()->GetFirst());
1324	const Double_t maxl = hist->GetBinCenter(hist->GetXaxis()->GetLast());
1325
1326	TLatex deadtex;
1327	deadtex.SetTextSize(0.07);
1328	deadtex.DrawLatex(minl+0.015*(maxl-minl),max/1.1,
1329	Form("%3i %s pixels",(Int_t)dead,whatsmall));
1330
1331	TLatex noisytex;
1332	noisytex.SetTextSize(0.07);
1333	noisytex.DrawLatex(minl+0.015*(maxl-minl),max/1.2,
1334	Form("%3i %s pixels",(Int_t)noisy,whatbig));
1335
1336	}
1337
1338	void MJCalibration::FixDataCheckHist(TH1D *hist) const
1339	{
1340
1341	hist->SetDirectory(NULL);
1342
1343	//
1344	// set the labels bigger
1345	//
1346	TAxis *xaxe = hist->GetXaxis();
1347	TAxis *yaxe = hist->GetYaxis();
1348
1349	xaxe->CenterTitle();
1350	yaxe->CenterTitle();
1351	xaxe->SetTitleSize(0.06);
1352	yaxe->SetTitleSize(0.06);
1353	xaxe->SetTitleOffset(0.8);
1354	yaxe->SetTitleOffset(0.85);
1355	xaxe->SetLabelSize(0.05);
1356	yaxe->SetLabelSize(0.05);
1357
1358	}
1359
1360	const Int_t MJCalibration::CountBadPixels ( MHCamera *cam , const Int_t what ) const
1361	{
1362
1363	Int_t cnt = 0;
1364
1365	for (UInt_t pix=0; pix<cam->GetNumPixels();pix++)
1366	if ((Int_t)cam->GetPixContent(pix) == what)
1367	cnt++;
1368
1369	return cnt;
1370	}
1371
1372	// --------------------------------------------------------------------------
1373	//
1374	// Retrieve the output file written by WriteResult()
1375	//
1376	const char* MJCalibration::GetOutputFile() const
1377	{
1378	const TString name(GetOutputFileName());
1379	if (name.IsNull())
1380	return "";
1381
1382	return Form("%s/%s", fPathOut.Data(), name.Data());
1383	}
1384
1385	const char* MJCalibration::GetOutputFileName() const
1386	{
1387
1388	if (fSequence.IsValid())
1389	return Form("calib%08d.root", fSequence.GetSequence());
1390	if (!fRuns)
1391	return "";
1392
1393	return Form("%s-F1.root", (const char*)fRuns->GetRunsAsFileName());
1394	}
1395
1396	// --------------------------------------------------------------------------
1397	//
1398	// Read the following values from resource file:
1399	//
1400	// ConvFADC2PheMin
1401	// ConvFADC2PheMax
1402	// ConvFADC2PhotMin
1403	// ConvFADC2PhotMax
1404	//
1405	// QEMin
1406	// QEMax
1407	//
1408	// ArrivalTimeMin
1409	// ArrivalTimeMax
1410	//
1411	// TimeOffsetMin
1412	// TimeOffsetMax
1413	// TimeResolutionMin
1414	// TimeResolutionMax
1415	//
1416	// RefConvFADC2PheInner
1417	// RefConvFADC2PheOuter
1418	// RefConvFADC2PhotInner
1419	// RefConvFADC2PhotOuter
1420	//
1421	// RefQEInner
1422	// RefQEOuter
1423	//
1424	// RefArrivalTimeInner
1425	// RefArrivalTimeOuter
1426	// RefArrivalTimeRmsInner
1427	// RefArrivalTimeRmsOuter
1428	//
1429	// RefTimeOffsetInner
1430	// RefTimeOffsetOuter
1431	// RefTimeResolutionInner
1432	// RefTimeResolutionOuter
1433	//
1434	void MJCalibration::ReadReferenceFile()
1435	{
1436	TEnv refenv(fReferenceFile);
1437
1438	fConvFADC2PheMin = refenv.GetValue("ConvFADC2PheMin",fConvFADC2PheMin);
1439	fConvFADC2PheMax = refenv.GetValue("ConvFADC2PheMax",fConvFADC2PheMax);
1440	fConvFADC2PhotMin = refenv.GetValue("ConvFADC2PhotMin",fConvFADC2PhotMin);
1441	fConvFADC2PhotMax = refenv.GetValue("ConvFADC2PhotMax",fConvFADC2PhotMax);
1442	fQEMin = refenv.GetValue("QEMin",fQEMin);
1443	fQEMax = refenv.GetValue("QEMax",fQEMax);
1444	fArrivalTimeMin = refenv.GetValue("ArrivalTimeMin",fArrivalTimeMin);
1445	fArrivalTimeMax = refenv.GetValue("ArrivalTimeMax",fArrivalTimeMax);
1446	fTimeOffsetMin = refenv.GetValue("TimeOffsetMin",fTimeOffsetMin);
1447	fTimeOffsetMax = refenv.GetValue("TimeOffsetMax",fTimeOffsetMax);
1448	fTimeResolutionMin = refenv.GetValue("TimeResolutionMin",fTimeResolutionMin);
1449	fTimeResolutionMax = refenv.GetValue("TimeResolutionMax",fTimeResolutionMax);
1450
1451	fRefConvFADC2PheInner = refenv.GetValue("RefConvFADC2PheInner",fRefConvFADC2PheInner);
1452	fRefConvFADC2PheOuter = refenv.GetValue("RefConvFADC2PheOuter",fRefConvFADC2PheOuter);
1453	fRefConvFADC2PhotInner = refenv.GetValue("RefConvFADC2PhotInner",fRefConvFADC2PhotInner);
1454	fRefConvFADC2PhotOuter = refenv.GetValue("RefConvFADC2PhotOuter",fRefConvFADC2PhotOuter);
1455	fRefQEInner = refenv.GetValue("RefQEInner",fRefQEInner);
1456	fRefQEOuter = refenv.GetValue("RefQEOuter",fRefQEOuter);
1457	fRefArrivalTimeInner = refenv.GetValue("RefArrivalTimeInner",fRefArrivalTimeInner);
1458	fRefArrivalTimeOuter = refenv.GetValue("RefArrivalTimeOuter",fRefArrivalTimeOuter);
1459	fRefArrivalTimeRmsInner = refenv.GetValue("RefArrivalTimeRmsInner",fRefArrivalTimeRmsInner);
1460	fRefArrivalTimeRmsOuter = refenv.GetValue("RefArrivalTimeRmsOuter",fRefArrivalTimeRmsOuter);
1461	fRefTimeOffsetInner = refenv.GetValue("RefTimeOffsetInner",fRefTimeOffsetInner);
1462	fRefTimeOffsetOuter = refenv.GetValue("RefTimeOffsetOuter",fRefTimeOffsetOuter);
1463	fRefTimeResolutionInner = refenv.GetValue("RefTimeResolutionInner",fRefTimeResolutionInner);
1464	fRefTimeResolutionOuter = refenv.GetValue("RefTimeResolutionOuter",fRefTimeResolutionOuter);
1465	}
1466
1467	// --------------------------------------------------------------------------
1468	//
1469	// Read the following values from resource file:
1470	//
1471	// MCalibrationHiLoCam
1472	//
1473	Bool_t MJCalibration::ReadHiLoCalibFile()
1474	{
1475
1476	TFile file(fHiLoCalibFile,"READ");
1477
1478	MCalibrationHiLoCam hilocam;
1479
1480	if (hilocam.Read()<=0)
1481	{
1482	*fLog << err << "Unable to read MCalibrationHiLoCam from " << fHiLoCalibFile << endl;
1483	return kFALSE;
1484	}
1485
1486	if (hilocam.GetSize() < 1)
1487	{
1488	*fLog << err << "MCalibationHiLoCam is un-initialized in file " << fHiLoCalibFile << endl;
1489	return kFALSE;
1490	}
1491
1492	if (fCalibrationCam.GetSize() < 1)
1493	fCalibrationCam.InitSize(hilocam.GetSize());
1494
1495	if (fBadPixels.GetSize() < 1)
1496	fBadPixels.InitSize(hilocam.GetSize());
1497
1498	if (fCalibrationCam.GetSize() != hilocam.GetSize())
1499	{
1500	*fLog << err << "Size mismatch MCalibationHiLoCam and MCalibrationChargeCam " << endl;
1501	return kFALSE;
1502	}
1503
1504	for (Int_t i=0;i<hilocam.GetSize();i++)
1505	{
1506	const MCalibrationHiLoPix &pix = (MCalibrationHiLoPix&)hilocam[i];
1507
1508	const Float_t ratio = pix.GetHiLoChargeRatio();
1509	const Float_t sigma = pix.GetHiLoChargeRatioSigma();
1510
1511	if (ratio < 0.)
1512	{
1513	fBadPixels[i].SetUncalibrated(MBadPixelsPix::kConversionHiLoNotValid);
1514	continue;
1515	}
1516
1517	MCalibrationChargePix &cpix = (MCalibrationChargePix&)fCalibrationCam[i];
1518
1519	cpix.SetConversionHiLo(ratio);
1520	cpix.SetConversionHiLoErr(sigma);
1521	}
1522	return kTRUE;
1523	}
1524
1525	// --------------------------------------------------------------------------
1526	//
1527	// MJCalibration allows to setup several option by a resource file:
1528	// MJCalibration.Display: full, datacheck, normal
1529	// MJCalibration.RelTimeCalibration: yes,no
1530	// MJCalibration.DataCheck: yes,no
1531	// MJCalibration.Debug: yes,no
1532	// MJCalibration.Intensity: yes,no
1533	// MJCalibration.UseBlindPixel: yes,no
1534	// MJCalibration.UsePINDiode: yes,no
1535	// MJCalibration.Geometry: MGeomCamMagic, MGeomCamECO1000
1536	//
1537	// Name of a file containing reference values (see ReadReferenceFile)
1538	// Prefix.ReferenceFile: filename
1539	// (see ReadReferenceFile)
1540	//
1541	// For more details see the class description and the corresponding Getters
1542	//
1543	Bool_t MJCalibration::CheckEnvLocal()
1544	{
1545
1546	TString dis = GetEnv("Display", "");
1547	if (dis.BeginsWith("Full", TString::kIgnoreCase))
1548	SetFullDisplay();
1549	if (dis.BeginsWith("DataCheck", TString::kIgnoreCase))
1550	SetDataCheckDisplay();
1551	if (dis.BeginsWith("Normal", TString::kIgnoreCase))
1552	SetNormalDisplay();
1553
1554	if (!MJCalib::CheckEnvLocal())
1555	return kFALSE;
1556
1557	SetRelTimeCalibration(GetEnv("RelTimeCalibration", IsRelTimes()));
1558	SetIntensity(GetEnv("IntensityCalibration", IsIntensity()));
1559	SetDebug(GetEnv("Debug", IsDebug()));
1560
1561	SetUseBlindPixel(GetEnv("UseBlindPixel", IsUseBlindPixel()));
1562	SetUsePINDiode(GetEnv("UsePINDiode", IsUsePINDiode()));
1563	SetGeometry(GetEnv("Geometry", fGeometry));
1564
1565	fReferenceFile = GetEnv("ReferenceFile",fReferenceFile.Data());
1566	ReadReferenceFile();
1567
1568	fHiLoCalibFile = GetEnv("HiLoCalibFile",fHiLoCalibFile.Data());
1569
1570	return ReadHiLoCalibFile();
1571	}
1572
1573	// --------------------------------------------------------------------------
1574	//
1575	// Call the ProcessFile(MPedestalCam)
1576	//
1577	Bool_t MJCalibration::Process(MPedestalCam &pedcam)
1578	{
1579	if (!ReadCalibrationCam())
1580	return ProcessFile(pedcam);
1581
1582	return kTRUE;
1583	}
1584
1585	void MJCalibration::InitBlindPixel(MExtractBlindPixel &blindext,
1586	MHCalibrationChargeBlindCam &blindcam)
1587	{
1588
1589	Int_t run = fSequence.IsValid() ? fSequence.GetLastRun() : fRuns->GetRuns()[fRuns->GetNumRuns()-1];
1590
1591	//
1592	// Initialize the blind pixel. Unfortunately, there is a hardware difference
1593	// in the first blind pixel until run "gkSecondBlindPixelInstallation" and the
1594	// later setup. The first needs to use a filter because of the length of
1595	// spurious NSB photon signals. The latter get better along extracting the amplitude
1596	// from a small window.
1597	//
1598	if (run < gkSecondBlindPixelInstallation)
1599	{
1600	MCalibrationBlindCamOneOldStyle blindresults;
1601	if (IsIntensity())
1602	blindresults.Copy(*fIntensBlindCam.GetCam());
1603	else
1604	blindresults.Copy(fCalibrationBlindCam);
1605
1606	blindext.SetExtractionType(MExtractBlindPixel::kIntegral);
1607	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1608	blindext.SetRange(10,19,0,6);
1609	blindext.SetNSBFilterLimit(70);
1610	}
1611	else if (run < gkThirdBlindPixelInstallation)
1612	{
1613
1614	MCalibrationBlindCamTwoNewStyle blindresults;
1615
1616	if (IsIntensity())
1617	blindresults.Copy(*fIntensBlindCam.GetCam());
1618	else
1619	blindresults.Copy(fCalibrationBlindCam);
1620
1621	blindext.SetNumBlindPixels(blindresults.GetSize());
1622	for (Int_t i=0;i<blindresults.GetSize();i++)
1623	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1624
1625	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1626	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1627	blindext.SetRange(5,8,0,2);
1628	blindext.SetNSBFilterLimit(38);
1629
1630	}
1631	else
1632	{
1633
1634	MCalibrationBlindCamThreeNewStyle blindresults;
1635
1636	if (IsIntensity())
1637	blindresults.Copy(*fIntensBlindCam.GetCam());
1638	else
1639	blindresults.Copy(fCalibrationBlindCam);
1640
1641	blindext.SetNumBlindPixels(blindresults.GetSize());
1642
1643	for (Int_t i=0;i<blindresults.GetSize();i++)
1644	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1645
1646	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1647	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1648	blindext.SetDataType(MExtractBlindPixel::kRawEvt2);
1649	blindext.SetRange(5,8,0,2);
1650	blindext.SetNSBFilterLimit(38);
1651
1652	}
1653
1654	}
1655
1656	// --------------------------------------------------------------------------
1657	//
1658	// Execute the task list and the eventloop:
1659	//
1660	// - Check if there are fRuns, otherwise return
1661	// - Check the colour of the files in fRuns (FindColor()), otherwise return
1662	// - Check for consistency between run numbers and number of files
1663	// - Add fRuns to MReadMarsFile
1664	// - Put into MParList:
1665	// 1) MPedestalCam (pedcam)
1666	// 2) MCalibrationQECam (fQECam)
1667	// 3) MCalibrationChargeCam (fCalibrationCam)
1668	// 4) MCalibrationRelTimeCam (fRelTimeCam) (only if flag IsRelTimes() is chosen)
1669	// 5) MBadPixelsCam (fBadPixels)
1670	// 6) MCalibrationChargePINDiode
1671	// 7) MCalibrationBlindPix
1672	// - Put into the MTaskList:
1673	// 1) MReadMarsFile
1674	// 2) MBadPixelsMerge
1675	// 3) MGeomApply
1676	// 4) MExtractor
1677	// 5) MExtractPINDiode
1678	// 6) MExtractBlindPixel
1679	// 7) MExtractTime (only if flag IsRelTimes() is chosen)
1680	// 8) MContinue(MFCosmics)
1681	// 9) MFillH("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode")
1682	// 10) MFillH("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam")
1683	// 11) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam")
1684	// 12) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillRelTime")
1685	// 13) MCalibrationChargeCalc
1686	// 14) MFillH("MHCalibrationRelTimeCam", "MArrivalTimeCam") (only if flag IsRelTimes() is chosen)
1687	// 15) MCalibrationRelTimeCalc
1688	// - Execute MEvtLoop
1689	// - DisplayResult()
1690	// - WriteResult()
1691	//
1692	Bool_t MJCalibration::ProcessFile(MPedestalCam &pedcam)
1693	{
1694	if (!fSequence.IsValid())
1695	{
1696	if (!fRuns)
1697	{
1698	*fLog << err << "No Runs choosen... abort." << endl;
1699	return kFALSE;
1700	}
1701
1702	if (fRuns->GetNumRuns() != fRuns->GetNumEntries())
1703	{
1704	*fLog << err << "Number of files found doesn't match number of runs... abort."
1705	<< fRuns->GetNumRuns() << " vs. " << fRuns->GetNumEntries() << endl;
1706	return kFALSE;
1707	}
1708	}
1709
1710	//if (!CheckEnv())
1711	// return kFALSE;
1712
1713	if (!CheckEnv())
1714	return kFALSE;
1715
1716	// --------------------------------------------------------------------------------
1717
1718	*fLog << inf;
1719	fLog->Separator(GetDescriptor());
1720
1721	*fLog << "Calculate MCalibrationCam from ";
1722	if (fSequence.IsValid())
1723	*fLog << "Sequence #" << fSequence.GetSequence() << endl;
1724	else
1725	*fLog << "Runs " << fRuns->GetRunsAsString() << endl;
1726	*fLog << endl;
1727
1728	// --------------------------------------------------------------------------------
1729
1730	// Setup Tasklist
1731	MParList plist;
1732	MTaskList tlist;
1733	plist.AddToList(&tlist);
1734	plist.AddToList(this); // take care of fDisplay!
1735
1736	MDirIter iter;
1737	if (fSequence.IsValid())
1738	{
1739	const Int_t n0 = fSequence.SetupCalRuns(iter, fPathData, "C", IsUseRawData());
1740	const Int_t n1 = fSequence.GetNumCalRuns();
1741	if (n0==0)
1742	{
1743	*fLog << err << "ERROR - No input files of sequence found!" << endl;
1744	return kFALSE;
1745	}
1746	if (n0!=n1)
1747	{
1748	*fLog << err << "ERROR - Number of files found ("
1749	<< n0 << ") doesn't match number of files in sequence ("
1750	<< n1 << ")" << endl;
1751	return kFALSE;
1752	}
1753	}
1754
1755	//
1756	// Input containers
1757	//
1758	pedcam.SetName("MPedestalCam"); // MPedestalFundamental
1759	plist.AddToList(&pedcam);
1760	plist.AddToList(&fBadPixels);
1761
1762	//
1763	// Calibration Results containers
1764	//
1765	if (IsIntensity())
1766	{
1767	plist.AddToList(&fIntensQECam);
1768	plist.AddToList(&fIntensCalibCam);
1769	plist.AddToList(&fIntensBlindCam);
1770	// plist.AddToList(&fIntensCalibrationPINDiode);
1771	plist.AddToList(&fIntensRelTimeCam);
1772	plist.AddToList(&fIntensBadCam);
1773	}
1774	else
1775	{
1776	plist.AddToList(&fQECam);
1777	plist.AddToList(&fCalibrationCam);
1778	plist.AddToList(&fCalibrationBlindCam);
1779	plist.AddToList(&fCalibrationPINDiode);
1780	plist.AddToList(&fRelTimeCam);
1781	}
1782
1783	//
1784	// Initialize two histogram containers which could be modified in this class
1785	//
1786	MHCalibrationRelTimeCam reltimecam;
1787	MHCalibrationChargeCam chargecam;
1788	MHCalibrationChargeBlindCam blindcam;
1789	plist.AddToList(&chargecam);
1790	plist.AddToList(&blindcam);
1791	if (IsRelTimes())
1792	plist.AddToList(&reltimecam);
1793	//
1794	// Data Reading tasks
1795	//
1796	MReadMarsFile read("Events");
1797	MRawFileRead rawread(NULL);
1798
1799	if (IsUseRawData())
1800	{
1801	rawread.AddFiles(fSequence.IsValid() ? iter : *fRuns);
1802	tlist.AddToList(&rawread);
1803	}
1804	else
1805	{
1806	read.DisableAutoScheme();
1807	read.AddFiles(fSequence.IsValid() ? iter : *fRuns);
1808	tlist.AddToList(&read);
1809	}
1810
1811	//
1812	// Other Tasks
1813	//
1814	MCalibrationPatternDecode decode;
1815	MGeomApply apply;
1816	apply.SetGeometry(fGeometry);
1817
1818	MBadPixelsMerge merge(&fBadPixels);
1819	MExtractPINDiode pinext;
1820	MExtractBlindPixel blindext;
1821
1822	InitBlindPixel(blindext, blindcam);
1823
1824	MExtractSlidingWindow extract2;
1825	MExtractTimeHighestIntegral timehigh;
1826	MCalibrationChargeCalc calcalc;
1827	MCalibrationRelTimeCalc timecalc;
1828	calcalc.SetOutputFile("");
1829	timecalc.SetOutputFile("");
1830
1831	if (!fSequence.IsValid())
1832	{
1833	calcalc.SetOutputPath(fPathOut);
1834	calcalc.SetOutputFile(Form("%s-ChargeCalibStat.txt",(const char*)fRuns->GetRunsAsFileName()));
1835	timecalc.SetOutputPath(fPathOut);
1836	timecalc.SetOutputFile(Form("%s-ChargeCalibStat.txt",(const char*)fRuns->GetRunsAsFileName()));
1837	}
1838
1839	if (IsDebug())
1840	{
1841	chargecam.SetDebug();
1842	calcalc.SetDebug();
1843	}
1844
1845	//
1846	// Calibration histogramming
1847	//
1848	MFillH fillpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
1849	MFillH fillbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
1850	MFillH fillcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
1851	MFillH filltme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
1852	fillpin.SetBit(MFillH::kDoNotDisplay);
1853	fillbnd.SetBit(MFillH::kDoNotDisplay);
1854	fillcam.SetBit(MFillH::kDoNotDisplay);
1855	filltme.SetBit(MFillH::kDoNotDisplay);
1856
1857	//
1858	// Set default extractors in case, none has been set...
1859	//
1860	if (!fExtractor)
1861	fExtractor = &extract2;
1862	if (!fTimeExtractor)
1863	fTimeExtractor = &timehigh;
1864
1865	const Bool_t istimecharge = fExtractor->InheritsFrom("MExtractTimeAndCharge");
1866	//
1867	// Look if the extractor is a pure charge or also a time extractor
1868	//
1869	if (istimecharge)
1870	{
1871	if (fExtractorCam.GetSize() == pedcam.GetSize())
1872	calcalc.SetPedestals(&fExtractorCam);
1873	else
1874	{
1875	*fLog << err << GetDescriptor() << "ERROR - ";
1876	*fLog << "Used Extractor derives from MExtractTimeAndCharge, " << endl;
1877	*fLog << "but MExtractorCam size " << fExtractorCam.GetSize() << " ";
1878	*fLog << "mismatch pedcam size " << pedcam.GetSize() << "! " << endl;
1879	return kFALSE;
1880	}
1881	}
1882
1883	//
1884	// Setup more tasks and tasklist
1885	//
1886	MTaskEnv taskenv("ExtractSignal");
1887	taskenv.SetDefault(fExtractor);
1888
1889	tlist.AddToList(&decode);
1890	tlist.AddToList(&merge);
1891	tlist.AddToList(&apply);
1892
1893	MPedCalcPedRun pedcalc;
1894	pedcalc.SetExtractWindow(fExtractor->GetHiGainFirst(),TMath::Nint(fExtractor->GetNumHiGainSamples()));
1895
1896	if (IsIntensity())
1897	tlist.AddToList(&pedcalc);
1898
1899	MCalibColorSet colorset;
1900	tlist.AddToList(&colorset);
1901
1902	tlist.AddToList(&taskenv);
1903	tlist.AddToList(&pinext);
1904	tlist.AddToList(&blindext);
1905
1906	MTaskEnv taskenv2("ExtractTime");
1907	if (!istimecharge)
1908	{
1909	taskenv2.SetDefault(fTimeExtractor);
1910
1911	if (IsRelTimes())
1912	tlist.AddToList(&taskenv2);
1913	}
1914
1915	//
1916	// Apply a filter against cosmics
1917	// (will have to be needed in the future
1918	// when the calibration hardware-trigger is working)
1919	//
1920	MFCosmics cosmics;
1921	MContinue cont(&cosmics);
1922
1923	if (fColor == MCalibrationCam::kCT1)
1924	tlist.AddToList(&cont);
1925
1926	MCalibColorSteer steer;
1927	if (IsIntensity())
1928	tlist.AddToList(&steer);
1929
1930	tlist.AddToList(&fillcam);
1931
1932	if (IsRelTimes())
1933	{
1934	tlist.AddToList(&filltme);
1935	tlist.AddToList(&timecalc);
1936	}
1937
1938	if (IsUseBlindPixel())
1939	tlist.AddToList(&fillbnd);
1940	if (IsUsePINDiode())
1941	tlist.AddToList(&fillpin);
1942
1943	tlist.AddToList(&calcalc);
1944
1945	// Create and setup the eventloop
1946	MEvtLoop evtloop(fName);
1947	evtloop.SetParList(&plist);
1948	evtloop.SetDisplay(fDisplay);
1949	evtloop.SetLogStream(fLog);
1950	if (!SetupEnv(evtloop))
1951	return kFALSE;
1952
1953	if (!taskenv.GetTask() && !taskenv2.GetTask())
1954	{
1955	*fLog << err << "ERROR - Neither ExtractSignal nor ExtractTime initialized or both '<dummy>'." << endl;
1956	return kFALSE;
1957	}
1958
1959	if (!WriteTasks(taskenv.GetTask(), istimecharge ? 0 : taskenv2.GetTask()))
1960	return kFALSE;
1961
1962	// Execute first analysis
1963	if (!evtloop.Eventloop())
1964	{
1965	DisplayResult(plist);
1966	WriteResult(plist);
1967	*fLog << err << GetDescriptor() << ": Failed." << endl;
1968	return kFALSE;
1969	}
1970
1971	tlist.PrintStatistics();
1972
1973	if (fPixelCheck)
1974	{
1975	MHCalibrationChargeCam hcam = (MHCalibrationChargeCam)plist.FindObject("MHCalibrationChargeCam");
1976	MHCalibrationChargePix &pix1 = (MHCalibrationChargePix&)(*hcam)[fCheckedPixId];
1977	pix1.DrawClone("");
1978
1979	MHCalibrationChargePix &pix2 = (MHCalibrationChargePix&)(*hcam)(fCheckedPixId);
1980	pix2.DrawClone("");
1981
1982	if (IsRelTimes())
1983	{
1984	MHCalibrationRelTimeCam hccam = (MHCalibrationRelTimeCam)plist.FindObject("MHCalibrationRelTimeCam");
1985	MHCalibrationPix &pix11 = (*hccam)[fCheckedPixId];
1986	pix11.DrawClone("");
1987	MHCalibrationPix &pix12 = (*hccam)(fCheckedPixId);
1988	pix12.DrawClone("");
1989	}
1990	}
1991
1992	if (!fCalibrationPINDiode.IsValid())
1993	SetUsePINDiode(kFALSE);
1994
1995	DisplayResult(plist);
1996
1997	if (!WriteResult(plist))
1998	return kFALSE;
1999
2000	*fLog << all << GetDescriptor() << ": Done." << endl;
2001
2002	return kTRUE;
2003	}
2004
2005	// --------------------------------------------------------------------------
2006	//
2007	// Read the following containers from GetOutputFile()
2008	// - MCalibrationChargeCam
2009	// - MCalibrationQECam
2010	// - MBadPixelsCam
2011	//
2012	Bool_t MJCalibration::ReadCalibrationCam()
2013	{
2014
2015	if (IsNoStorage())
2016	return kFALSE;
2017
2018	const TString fname = GetOutputFile();
2019
2020	if (gSystem->AccessPathName(fname, kFileExists))
2021	{
2022	*fLog << err << "Input file " << fname << " doesn't exist." << endl;
2023	return kFALSE;
2024	}
2025
2026	*fLog << inf << "Reading from file: " << fname << endl;
2027
2028	TFile file(fname, "READ");
2029	if (fCalibrationCam.Read()<=0)
2030	{
2031	*fLog << err << "Unable to read MCalibrationChargeCam from " << fname << endl;
2032	return kFALSE;
2033	}
2034
2035	if (fQECam.Read()<=0)
2036	{
2037	*fLog << err << "Unable to read MCalibrationQECam from " << fname << endl;
2038	return kFALSE;
2039	}
2040
2041
2042	if (file.FindKey("MCalibrationRelTimeCam"))
2043	if (fRelTimeCam.Read()<=0)
2044	{
2045	*fLog << err << "Unable to read MCalibrationRelTimeCam from " << fname << endl;
2046	return kFALSE;
2047	}
2048
2049	if (file.FindKey("MBadPixelsCam"))
2050	{
2051	MBadPixelsCam bad;
2052	if (bad.Read()<=0)
2053	{
2054	*fLog << err << "Unable to read MBadPixelsCam from " << fname << endl;
2055	return kFALSE;
2056	}
2057	fBadPixels.Merge(bad);
2058	}
2059
2060	if (fDisplay /&& !fDisplay->GetCanvas("Pedestals")/) // FIXME!
2061	fDisplay->Read();
2062
2063	return kTRUE;
2064	}
2065
2066
2067	// --------------------------------------------------------------------------
2068	//
2069	// Set the useage of the Blind Pixel device
2070	//
2071	void MJCalibration::SetUseBlindPixel(const Bool_t b)
2072	{
2073	b ? SETBIT(fDevices,kUseBlindPixel) : CLRBIT(fDevices,kUseBlindPixel);
2074	}
2075
2076	// --------------------------------------------------------------------------
2077	//
2078	// Set the useage of the PIN Diode device
2079	//
2080	void MJCalibration::SetUsePINDiode(const Bool_t b)
2081	{
2082	b ? SETBIT(fDevices,kUsePINDiode) : CLRBIT(fDevices,kUsePINDiode);
2083	}
2084
2085	/*
2086	Bool_t MJCalibration::WriteEventloop(MEvtLoop &evtloop) const
2087	{
2088	if (IsNoStorage())
2089	return kTRUE;
2090
2091	if (fPathOut.IsNull())
2092	return kTRUE;
2093
2094	const TString oname(GetOutputFile());
2095
2096	*fLog << inf << "Writing to file: " << oname << endl;
2097
2098	TFile file(oname, fOverwrite?"RECREATE":"NEW", "File created by MJCalibration", 9);
2099	if (!file.IsOpen())
2100	{
2101	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
2102	return kFALSE;
2103	}
2104
2105	if (evtloop.Write(fName)<=0)
2106	{
2107	*fLog << err << "Unable to write MEvtloop to " << oname << endl;
2108	return kFALSE;
2109	}
2110
2111	return kTRUE;
2112	}
2113	*/
2114
2115	Bool_t MJCalibration::WriteTasks(MTask t1, MTask t2) const
2116	{
2117	if (IsNoStorage())
2118	return kTRUE;
2119
2120	TObjArray cont;
2121	if (t1)
2122	cont.Add(t1);
2123	if (t2)
2124	cont.Add(t2);
2125
2126	return WriteContainer(cont, GetOutputFileName(), fOverwrite?"RECREATE":"NEW");
2127	}
2128
2129	// --------------------------------------------------------------------------
2130	//
2131	// Write the result into the output file GetOutputFile(), if fOutputPath exists.
2132	//
2133	// The following containers are written:
2134	// - MStatusDisplay
2135	// - MCalibrationChargeCam or MCalibrationIntensityChargeCam
2136	// - MCalibrationBlindCam or MCalibrationIntensityBlindCam
2137	// - MCalibrationQECam or MCalibrationIntensityQECam
2138	// - MCalibrationChargePINDiode
2139	// - MBadPixelsCam
2140	// If the flag kRelTimes is set, then also:
2141	// - MCalibrationRelTimeCam or MCalibrationIntensityRelTimeCam
2142	//
2143	Bool_t MJCalibration::WriteResult(MParList &plist)
2144	{
2145	TObjArray cont;
2146
2147	if (!IsNoStorage())
2148	{
2149	if (IsIntensity())
2150	{
2151	cont.Add(&fIntensBadCam);
2152	cont.Add(&fIntensCalibCam);
2153	cont.Add(&fIntensQECam);
2154	cont.Add(&fIntensBlindCam);
2155	}
2156	else
2157	{
2158	cont.Add(&fBadPixels);
2159	cont.Add(&fCalibrationCam);
2160	cont.Add(&fQECam);
2161	cont.Add(&fCalibrationBlindCam);
2162	}
2163	cont.Add(&fCalibrationPINDiode);
2164
2165	//if (IsRelTimes())
2166	cont.Add(IsIntensity() ? (TObject)&fIntensRelTimeCam : (TObject)&fRelTimeCam);
2167
2168	if (fExtractorCam.GetSize() != 0)
2169	cont.Add(&fExtractorCam);
2170
2171	TObject *pedcam = plist.FindObject("MPedestalCam");
2172	if (!pedcam)
2173	*fLog << warn << " - WARNING - MPedestalCam (fundamental)... not found for writing!" << endl;
2174	else
2175	cont.Add(pedcam);
2176
2177	TObject *geom = plist.FindObject("MGeomCam");
2178	if (!geom)
2179	*fLog << warn << " - WARNING - MGeomCam... not found for writing!" << endl;
2180	else
2181	cont.Add(geom);
2182	}
2183
2184	if (IsHistsStorage())
2185	{
2186	cont.Add(plist.FindObject("MHCalibrationChargeCam"));
2187	cont.Add(plist.FindObject("MHCalibrationChargeBlindCam"));
2188	cont.Add(plist.FindObject("MHCalibrationChargePINDiode"));
2189	if (IsRelTimes())
2190	cont.Add(plist.FindObject("MHCalibrationRelTimeCam"));
2191	}
2192
2193	return WriteContainer(cont, GetOutputFileName(), "UPDATE");
2194	}
2195
2196	void MJCalibration::DisplayDoubleProject(MHCamera cam, const char whatsmall, const char* whatbig) const
2197	{
2198
2199	TArrayI inner(1);
2200	inner[0] = 0;
2201
2202	TArrayI outer(1);
2203	outer[0] = 1;
2204
2205	TArrayI s1(3);
2206	s1[0] = 6;
2207	s1[1] = 1;
2208	s1[2] = 2;
2209
2210	TArrayI s2(3);
2211	s2[0] = 3;
2212	s2[1] = 4;
2213	s2[2] = 5;
2214
2215	TVirtualPad *pad = gPad;
2216	pad->Divide(2,1);
2217
2218	TH1D *inout[2];
2219
2220	for (int i=0; i<2; i++)
2221	{
2222	pad->cd(i+1);
2223	gPad->SetBorderMode(0);
2224	gPad->SetTicks();
2225
2226	inout[i] = cam->ProjectionS(TArrayI(), TArrayI(1,&i), i==0 ? "Inner" : "Outer");
2227	FixDataCheckHist(inout[i]);
2228	inout[i]->SetTitle(Form("%s %s",cam->GetTitle(),i==0 ? "Inner" : "Outer"));
2229	inout[i]->SetDirectory(NULL);
2230	inout[i]->SetLineColor(kRed+i);
2231	inout[i]->SetBit(kCanDelete);
2232	inout[i]->Draw();
2233	//
2234	// Display the outliers as dead and noisy pixels
2235	//
2236	if (!inout[i]->Fit("gaus","0Q"))
2237	DisplayOutliers(inout[i],whatsmall,whatbig);
2238
2239	gPad->Modified();
2240	gPad->Update();
2241	TPaveStats st = (TPaveStats)inout[i]->GetListOfFunctions()->FindObject("stats");
2242	st->SetY1NDC(0.6);
2243	st->SetY2NDC(0.9);
2244	st->SetX1NDC(0.55);
2245	st->SetX2NDC(0.99);
2246	gPad->Modified();
2247	gPad->Update();
2248
2249	TLegend *leg2 = new TLegend(0.55,0.4,0.99,0.6);
2250
2251	//
2252	// Display the two half of the camera separately
2253	//
2254	TH1D *half[2];
2255	half[0] = cam->ProjectionS(s1, TArrayI(1,&i), "Sector 6-1-2");
2256	half[1] = cam->ProjectionS(s2, TArrayI(1,&i), "Sector 3-4-5");
2257
2258	for (int j=0; j<2; j++)
2259	{
2260	half[j]->SetLineColor(kRed+i+2*j+1);
2261	half[j]->SetDirectory(NULL);
2262	half[j]->SetBit(kCanDelete);
2263	half[j]->Draw("same");
2264	leg2->AddEntry(half[j], half[j]->GetName(), "l");
2265	}
2266	leg2->Draw();
2267	}
2268	}

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