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Last change on this file since 6828 was 6828, checked in by tbretz, 20 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	! Author(s): Markus Gaug, 02/2004 <mailto:markus@ifae.es>
20	!
21	! Copyright: MAGIC Software Development, 2000-2004
22	!
23	!
24	\* ======================================================================== */
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibration
28	//
29	// Do one calibration loop over serious of runs with the same pulser
30	// colour and the same intensity. The following containers (rectangular) and
31	// tasks (ellipses) are called to produce an MCalibrationChargeCam and to
32	// update the MCalibrationQECam: (MCalibrate is not called from this class)
33	//
34	//Begin_Html
35	/*
36	<img src="images/CalibClasses.gif">
37	*/
38	//End_Html
39	//
40	// Different signal extractors can be set with the command SetExtractor()
41	// Only extractors deriving from MExtractor can be set, default is MExtractSlidingWindow
42	//
43	// Different arrival time extractors can be set with the command SetTimeExtractor()
44	// Only extractors deriving from MExtractTime can be set, default is MExtractTimeHighestIntegral
45	//
46	// At the end of the eventloop, plots and results are displayed, depending on
47	// the flags set (see DisplayResult())
48	//
49	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
50	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
51	// Otherwise, (default: SetNormalDisplay()), a good selection of plots is given
52	//
53	// The absolute light calibration devices Blind Pixel and PIN Diode can be switched on
54	// and off with the commands:
55	//
56	// - SetUseBlindPixel(Bool_t )
57	// - SetUsePINDiode(Bool_t )
58	//
59	// See also: MHCalibrationChargePix, MHCalibrationChargeCam, MHGausEvents
60	// MHCalibrationChargeBlindPix, MHCalibrationChargePINDiode
61	// MCalibrationChargePix, MCalibrationChargeCam, MCalibrationChargeCalc
62	// MCalibrationBlindPix, MCalibrationChargePINDiode,
63	// MCalibrationQECam, MBadPixelsPix, MBadPixelsCam
64	//
65	// If the flag RelTimeCalibration() is set, a calibration of the relative arrival
66	// times is also performed. The following containers (rectangular) and
67	// tasks (ellipses) are called to produce an MCalibrationRelTimeCam used by
68	// MCalibrateTime to correct timing offset between pixels: (MCalibrateTime is not
69	// called from this class)
70	//
71	//Begin_Html
72	/*
73	<img src="images/RelTimeClasses.gif">
74	*/
75	//End_Html
76	//
77	// Different arrival time extractors can be set directly with the command
78	// SetTimeExtractor(MExtractor *)
79	//
80	// Resource file entries are case sensitive!
81	//
82	// See also: MHCalibrationRelTimePix, MHCalibrationRelTimeCam, MHGausEvents
83	// MCalibrationRelTimePix, MCalibrationRelTimeCam
84	// MBadPixelsPix, MBadPixelsCam
85	//
86	/////////////////////////////////////////////////////////////////////////////
87	#include "MJCalibration.h"
88
89	#include <TFile.h>
90	#include <TF1.h>
91	#include <TStyle.h>
92	#include <TCanvas.h>
93	#include <TSystem.h>
94	#include <TLine.h>
95	#include <TLatex.h>
96	#include <TLegend.h>
97	#include <TRegexp.h>
98	#include <TPaveText.h>
99	#include <TPaveStats.h>
100	#include <TEnv.h>
101
102	#include "MLog.h"
103	#include "MLogManip.h"
104
105	#include "MRunIter.h"
106	#include "MSequence.h"
107	#include "MParList.h"
108	#include "MTaskList.h"
109	#include "MEvtLoop.h"
110
111	#include "MHCamera.h"
112	#include "MGeomCam.h"
113
114	#include "MPedestalCam.h"
115	#include "MCalibColorSteer.h"
116
117	#include "MCalibrationIntensityChargeCam.h"
118	#include "MCalibrationIntensityBlindCam.h"
119	#include "MCalibrationIntensityRelTimeCam.h"
120	#include "MCalibrationIntensityQECam.h"
121
122	#include "MCalibrationPatternDecode.h"
123	#include "MCalibrationCam.h"
124	#include "MCalibrationHiLoCam.h"
125	#include "MCalibrationHiLoPix.h"
126	#include "MCalibrationQECam.h"
127	#include "MCalibrationQEPix.h"
128	#include "MCalibrationChargeCam.h"
129	#include "MCalibrationChargePix.h"
130	#include "MCalibrationChargePINDiode.h"
131	#include "MCalibrationBlindPix.h"
132	#include "MCalibrationBlindCam.h"
133	#include "MCalibrationBlindCamOneOldStyle.h"
134	#include "MCalibrationBlindCamTwoNewStyle.h"
135	#include "MCalibrationBlindCamThreeNewStyle.h"
136	#include "MCalibrationChargeCalc.h"
137	#include "MCalibColorSet.h"
138	#include "MCalibrationRelTimeCam.h"
139	#include "MCalibrationRelTimeCalc.h"
140
141	#include "MHGausEvents.h"
142	#include "MHCalibrationCam.h"
143	#include "MHCalibrationChargeCam.h"
144	#include "MHCalibrationChargeBlindCam.h"
145	#include "MHCalibrationChargePINDiode.h"
146	#include "MHCalibrationRelTimeCam.h"
147	#include "MHCalibrationPix.h"
148
149	#include "MReadMarsFile.h"
150	#include "MPedCalcPedRun.h"
151	#include "MRawFileRead.h"
152	#include "MGeomApply.h"
153	#include "MTaskEnv.h"
154	#include "MBadPixelsMerge.h"
155	#include "MBadPixelsCam.h"
156	#include "MExtractTime.h"
157	#include "MExtractor.h"
158	#include "MExtractPINDiode.h"
159	#include "MExtractBlindPixel.h"
160	#include "MExtractSlidingWindow.h"
161	#include "MExtractTimeHighestIntegral.h"
162	#include "MFCosmics.h"
163	#include "MContinue.h"
164	#include "MFillH.h"
165
166	#include "MArrivalTimeCam.h"
167
168	#include "MStatusDisplay.h"
169
170	ClassImp(MJCalibration);
171
172	using namespace std;
173
174	const Int_t MJCalibration::gkIFAEBoxInaugurationRun = 20113;
175	const Int_t MJCalibration::gkSecondBlindPixelInstallation = 31693;
176	const Int_t MJCalibration::gkSpecialPixelsContInstallation = 34057;
177	const Int_t MJCalibration::gkThirdBlindPixelInstallation = 43308;
178	const TString MJCalibration::fgReferenceFile = "mjobs/calibrationref.rc";
179	const TString MJCalibration::fgHiLoCalibFile = "mjobs/hilocalib_df4.root";
180	// --------------------------------------------------------------------------
181	//
182	// Default constructor.
183	//
184	// - Sets fRuns to 0, fExtractor to NULL, fTimeExtractor to NULL, fColor to kNONE,
185	// fDisplay to kNormalDisplay, kRelTimes to kFALSE, kataCheck to kFALSE, kDebug to kFALSE,
186	// kIntensity to kFALSE
187	// - SetUseBlindPixel()
188	// - SetUsePINDiode()
189	//
190	MJCalibration::MJCalibration(const char name, const char title)
191	: fExtractor(NULL), fTimeExtractor(NULL),
192	fColor(MCalibrationCam::kNONE), fDisplayType(kDataCheckDisplay),
193	fGeometry("MGeomCamMagic")
194	{
195
196	fName = name ? name : "MJCalibration";
197	fTitle = title ? title : "Tool to create the calibration constants for one calibration run";
198
199	SetUseBlindPixel(kFALSE);
200	SetUsePINDiode(kFALSE);
201
202	SetHiLoCalibration();
203	SetRelTimeCalibration();
204	SetDebug(kFALSE);
205	SetIntensity(kFALSE);
206
207	SetReferenceFile();
208	SetHiLoCalibFile();
209
210	fConvFADC2PheMin = 0.;
211	fConvFADC2PheMax = 1.5;
212	fConvFADC2PhotMin = 0.;
213	fConvFADC2PhotMax = 10.;
214	fQEMin = 0.;
215	fQEMax = 0.3;
216	fArrivalTimeMin = 1.;
217	fArrivalTimeMax = 10.;
218	fTimeOffsetMin = -3.;
219	fTimeOffsetMax = 3.;
220	fTimeResolutionMin = 0.;
221	fTimeResolutionMax = 1.;
222
223	fRefConvFADC2PheInner = 0.14;
224	fRefConvFADC2PheOuter = 0.4;
225	fRefConvFADC2PhotInner = 0.8;
226	fRefConvFADC2PhotOuter = 3.8;
227	fRefQEInner = 0.18;
228	fRefQEOuter = 0.12;
229	fRefArrivalTimeInner = 4.5;
230	fRefArrivalTimeOuter = 5.0;
231	fRefArrivalTimeRmsInner = 0.5;
232	fRefArrivalTimeRmsOuter = 0.5;
233	fRefTimeOffsetInner = -0.23;
234	fRefTimeOffsetOuter = 0.39;
235	fRefTimeResolutionInner = 0.153;
236	fRefTimeResolutionOuter = 0.128;
237
238	}
239
240	void MJCalibration::DrawTab(MParList &plist, const char cont, const char name, Option_t *opt)
241	{
242	TObject *obj = plist.FindObject(cont);
243	if (!obj)
244	return;
245
246	fDisplay->AddTab(name);
247	obj->DrawClone(opt);
248	}
249
250	// --------------------------------------------------------------------------
251	//
252	// Display the results in MStatusDisplay:
253	//
254	// - Add "Calibration" to the MStatusDisplay title
255	// - Retrieve the MGeomCam from MParList
256	// - Initialize the following MHCamera's:
257	// 1) MCalibrationPix::GetMean()
258	// 2) MCalibrationPix::Sigma()
259	// 3) MCalibrationChargePix::GetRSigma()
260	// 4) MCalibrationChargePix::GetRSigmaPerCharge()
261	// 5) MCalibrationChargePix::GetPheFFactorMethod()
262	// 6) MCalibrationChargePix::GetMeanConvFADC2Phe()
263	// 7) MCalibrationChargePix::GetMeanFFactorFADC2Phot()
264	// 8) MCalibrationQEPix::GetQECascadesFFactor()
265	// 9) MCalibrationQEPix::GetQECascadesBlindPixel()
266	// 10) MCalibrationQEPix::GetQECascadesPINDiode()
267	// 11) MCalibrationQEPix::GetQECascadesCombined()
268	// 12) MCalibrationQEPix::IsAverageQEFFactorAvailable()
269	// 13) MCalibrationQEPix::IsAverageQEBlindPixelAvailable()
270	// 14) MCalibrationQEPix::IsAverageQEPINDiodeAvailable()
271	// 15) MCalibrationQEPix::IsAverageQECombinedAvailable()
272	// 16) MCalibrationChargePix::IsHiGainSaturation()
273	// 17) MCalibrationPix::GetHiLoMeansDivided()
274	// 18) MCalibrationPix::GetHiLoSigmasDivided()
275	// 19) MCalibrationChargePix::GetHiGainPickup()
276	// 20) MCalibrationChargePix::GetLoGainPickup()
277	// 21) MCalibrationChargePix::GetHiGainBlackout()
278	// 22) MCalibrationChargePix::GetLoGainBlackout()
279	// 23) MCalibrationPix::IsExcluded()
280	// 24) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnsuitableRun)
281	// 25) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnreliableRun)
282	// 26) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kHiGainOscillating)
283	// 27) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kLoGainOscillating)
284	// 28) MCalibrationChargePix::GetAbsTimeMean()
285	// 29) MCalibrationChargePix::GetAbsTimeRms()
286	//
287	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
288	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
289	// and otherwise, (default: SetNormalDisplay()), a good selection of plots is given
290	//
291	void MJCalibration::DisplayResult(MParList &plist)
292	{
293	if (!fDisplay)
294	return;
295
296	TString drawoption = "nonew ";
297	if (fDisplayType == kDataCheckDisplay)
298	drawoption += "datacheck";
299	if (fDisplayType == kFullDisplay)
300	drawoption += "all";
301
302	if (IsUsePINDiode())
303	DrawTab(plist, "MHCalibrationChargePINDiode", "PINDiode", drawoption);
304	if (IsUseBlindPixel())
305	DrawTab(plist, "MHCalibrationChargeBlindCam", "BlindPix", drawoption);
306	if (IsRelTimes())
307	DrawTab(plist, "MHCalibrationRelTimeCam", "Time", drawoption);
308	DrawTab(plist, "MHCalibrationChargeCam", "Charge", drawoption);
309
310	//
311	// Update display
312	//
313	TString title = fDisplay->GetTitle();
314	title += "-- Calibration ";
315	title += fSequence.IsValid() ? Form("calib%08d", fSequence.GetSequence()) : (const char*)fRuns->GetRunsAsString();
316	title += " --";
317	fDisplay->SetTitle(title);
318
319	//
320	// Get container from list
321	//
322	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
323
324	// Create histograms to display
325	MHCamera disp1 (geomcam, "Charge", "Fitted Mean Signal (Charges)");
326	MHCamera disp2 (geomcam, "SigmaCharge", "Sigma of Fitted Signal");
327	MHCamera disp3 (geomcam, "RSigma", "Reduced Sigmas");
328	MHCamera disp4 (geomcam, "RSigmaPerCharge", "Reduced Sigma per Charge");
329	MHCamera disp5 (geomcam, "NumPhes", "Number Photo-electrons");
330	MHCamera disp6 (geomcam, "ConvFADC2Phes", "Conversion Factor to Phes");
331	MHCamera disp7 (geomcam, "TotalFFactor", "Total F-Factor(F-Factor Method)");
332	MHCamera disp8 (geomcam, "CascadesQEFFactor", "Cascades QE (F-Factor Method)");
333	MHCamera disp9 (geomcam, "CascadesQEBlindPix","Cascades QE (Blind Pixel Method)");
334	MHCamera disp10(geomcam, "CascadesQEPINDiode","Cascades QE (PIN Diode Method)");
335	MHCamera disp11(geomcam, "CascadesQECombined","Cascades QE (Combined Method)");
336	MHCamera disp12(geomcam, "FFactorValid", "Pixels with valid F-Factor calibration");
337	MHCamera disp13(geomcam, "BlindPixelValid", "Pixels with valid BlindPixel calibration");
338	MHCamera disp14(geomcam, "PINdiodeValid", "Pixels with valid PINDiode calibration");
339	MHCamera disp15(geomcam, "CombinedValid", "Pixels with valid Combined calibration");
340	MHCamera disp16(geomcam, "Saturation", "Pixels with saturated Hi Gain");
341	MHCamera disp17(geomcam, "ConversionMeans", "Conversion HiGain.vs.LoGain Means");
342	MHCamera disp18(geomcam, "ConversionSigmas", "Conversion HiGain.vs.LoGain Sigmas");
343	MHCamera disp19(geomcam, "HiGainPickup", "Number Pickup events Hi Gain");
344	MHCamera disp20(geomcam, "LoGainPickup", "Number Pickup events Lo Gain");
345	MHCamera disp21(geomcam, "HiGainBlackout", "Number Blackout events Hi Gain");
346	MHCamera disp22(geomcam, "LoGainBlackout", "Number Blackout events Lo Gain");
347	MHCamera disp23(geomcam, "Excluded", "Pixels previously excluded");
348	MHCamera disp24(geomcam, "UnSuitable", "Pixels not suited for further analysis");
349	MHCamera disp25(geomcam, "UnReliable", "Pixels suitable, but not reliable for further analysis");
350	MHCamera disp26(geomcam, "HiGainOscillating", "Oscillating Pixels High Gain");
351	MHCamera disp27(geomcam, "LoGainOscillating", "Oscillating Pixels Low Gain");
352	MHCamera disp28(geomcam, "AbsTimeMean", "Abs. Arrival Times");
353	MHCamera disp29(geomcam, "AbsTimeRms", "RMS of Arrival Times");
354	MHCamera disp30(geomcam, "MeanTime", "Mean Rel. Arrival Times");
355	MHCamera disp31(geomcam, "SigmaTime", "Sigma Rel. Arrival Times");
356	MHCamera disp32(geomcam, "TimeProb", "Probability of Time Fit");
357	MHCamera disp33(geomcam, "TimeNotFitValid", "Pixels with not valid fit results");
358	MHCamera disp34(geomcam, "TimeOscillating", "Oscillating Pixels");
359	MHCamera disp35(geomcam, "TotalConv", "Conversion Factor to photons");
360	MHCamera disp36(geomcam, "RMSperMean", "Charge histogram RMS per Mean");
361
362	MCalibrationChargeCam *cam = NULL;
363	MCalibrationQECam *qecam = NULL;
364	MCalibrationRelTimeCam *relcam = NULL;
365	MBadPixelsCam *badcam = NULL;
366
367	if (IsIntensity())
368	{
369	cam = (MCalibrationChargeCam*) fIntensCalibCam.GetCam();
370	qecam = (MCalibrationQECam*) fIntensQECam.GetCam();
371	relcam = (MCalibrationRelTimeCam*)fIntensRelTimeCam.GetCam();
372	badcam = (MBadPixelsCam*) fIntensBadCam.GetCam();
373	}
374	else
375	{
376	cam = &fCalibrationCam;
377	qecam = &fQECam;
378	relcam = &fRelTimeCam;
379	badcam = &fBadPixels;
380	}
381
382	// Fitted charge means and sigmas
383	disp1.SetCamContent(*cam, 0);
384	disp1.SetCamError( *cam, 1);
385	disp2.SetCamContent(*cam, 2);
386	disp2.SetCamError( *cam, 3);
387
388	// Reduced Sigmas and reduced sigmas per charge
389	disp3.SetCamContent(*cam, 5);
390	disp3.SetCamError( *cam, 6);
391	disp4.SetCamContent(*cam, 7);
392	disp4.SetCamError( *cam, 8);
393
394	// F-Factor Method
395	disp5.SetCamContent(*cam, 9);
396	disp5.SetCamError( *cam, 10);
397	disp6.SetCamContent(*cam, 11);
398	disp6.SetCamError( *cam, 12);
399	disp7.SetCamContent(*cam, 13);
400	disp7.SetCamError( *cam, 14);
401
402	// Quantum Efficiencies
403	disp8.SetCamContent (*qecam, 0 );
404	disp8.SetCamError (*qecam, 1 );
405	disp9.SetCamContent (*qecam, 2 );
406	disp9.SetCamError (*qecam, 3 );
407	disp10.SetCamContent(*qecam, 4 );
408	disp10.SetCamError (*qecam, 5 );
409	disp11.SetCamContent(*qecam, 6 );
410	disp11.SetCamError (*qecam, 7 );
411
412	// Valid flags
413	disp12.SetCamContent(*qecam, 8 );
414	disp13.SetCamContent(*qecam, 9 );
415	disp14.SetCamContent(*qecam, 10);
416	disp15.SetCamContent(*qecam, 11);
417
418	// Conversion Hi-Lo
419	disp16.SetCamContent(*cam, 25);
420	disp17.SetCamContent(*cam, 16);
421	disp17.SetCamError (*cam, 17);
422	disp18.SetCamContent(*cam, 18);
423	disp18.SetCamError (*cam, 19);
424
425	// Pickup and Blackout
426	disp19.SetCamContent(*cam, 21);
427	disp20.SetCamContent(*cam, 22);
428	disp21.SetCamContent(*cam, 23);
429	disp22.SetCamContent(*cam, 24);
430
431	// Pixels with defects
432	disp23.SetCamContent(*cam, 20);
433	disp24.SetCamContent(*badcam, 6);
434	disp25.SetCamContent(*badcam, 7);
435
436	// Oscillations
437	disp26.SetCamContent(*badcam, 10);
438	disp27.SetCamContent(*badcam, 11);
439
440	// Arrival Times
441	disp28.SetCamContent(*cam, 26);
442	disp28.SetCamError( *cam, 27);
443	disp29.SetCamContent(*cam, 27);
444
445	// RMS and Mean
446	disp36.SetCamContent(*cam,32);
447
448	disp1.SetYTitle("Q [FADC cnts]");
449	disp2.SetYTitle("\\sigma_{Q} [FADC cnts]");
450
451	disp3.SetYTitle("\\sqrt{\\sigma^{2}_{Q} - RMS^{2}_{Ped}} [FADC cnts]");
452	disp4.SetYTitle("Red.Sigma/<Q> [1]");
453
454	disp5.SetYTitle("Photo-electons [1]");
455	disp6.SetYTitle("Conv.Factor [PhE/FADC cnts]");
456	disp7.SetYTitle("Total F-Factor [1]");
457
458	disp8.SetYTitle("QE [1]");
459	disp9.SetYTitle("QE [1]");
460	disp10.SetYTitle("QE [1]");
461	disp11.SetYTitle("QE [1]");
462
463	disp12.SetYTitle("[1]");
464	disp13.SetYTitle("[1]");
465	disp14.SetYTitle("[1]");
466	disp15.SetYTitle("[1]");
467	disp16.SetYTitle("[1]");
468
469	disp17.SetYTitle("<Q>(High)/<Q>(Low) [1]");
470	disp18.SetYTitle("\\sigma_{Q}(High)/\\sigma_{Q}(Low) [1]");
471
472	disp19.SetYTitle("[1]");
473	disp20.SetYTitle("[1]");
474	disp21.SetYTitle("[1]");
475	disp22.SetYTitle("[1]");
476	// disp23.SetYTitle("[1]");
477	// disp24.SetYTitle("[1]");
478	// disp25.SetYTitle("[1]");
479	disp26.SetYTitle("[1]");
480	disp27.SetYTitle("[1]");
481
482	disp28.SetYTitle("Mean Abs. Time [FADC sl.]");
483	disp29.SetYTitle("RMS Abs. Time [FADC sl.]");
484
485	disp35.SetYTitle("Conv.Factor [Ph/FADC cnts]");
486
487	disp36.SetYTitle("Charge RMS/<Q> [1]");
488
489	for (UInt_t i=0;i<geomcam.GetNumPixels();i++)
490	{
491
492	MCalibrationChargePix &pix = (MCalibrationChargePix&)(*cam) [i];
493	MCalibrationQEPix &qe = (MCalibrationQEPix&) (*qecam)[i];
494
495	if (!pix.IsFFactorMethodValid())
496	continue;
497
498	const Float_t convphe = pix.GetMeanConvFADC2Phe();
499	const Float_t quaeff = qe.GetQECascadesFFactor(0.);
500
501	disp35.Fill(i,convphe/quaeff);
502	disp35.SetUsed(i);
503	}
504
505
506	if (IsRelTimes())
507	{
508	disp30.SetCamContent(*relcam,0);
509	disp30.SetCamError( *relcam,1);
510	disp31.SetCamContent(*relcam,2);
511	disp31.SetCamError( *relcam,3);
512	disp32.SetCamContent(*relcam,4);
513	disp33.SetCamContent(fBadPixels,20);
514	disp34.SetCamContent(fBadPixels,21);
515
516	disp30.SetYTitle("Time Offset [FADC units]");
517	disp31.SetYTitle("Timing resolution [FADC units]");
518	disp32.SetYTitle("P_{Time} [1]");
519	disp33.SetYTitle("[1]");
520	disp34.SetYTitle("[1]");
521	}
522
523	if (fDisplayType == kDataCheckDisplay)
524	{
525
526	TCanvas &c1 = fDisplay->AddTab("FitCharge");
527	c1.Divide(3, 3);
528
529	//
530	// MEAN CHARGES
531	//
532
533	c1.cd(1);
534	gPad->SetBorderMode(0);
535	gPad->SetTicks();
536	MHCamera obj1=(MHCamera)disp1.DrawCopy("hist");
537	//
538	// for the datacheck, fix the ranges!!
539	//
540	// obj1->SetMinimum(fChargeMin);
541	// obj1->SetMaximum(fChargeMax);
542	//
543	// Set the datacheck sizes:
544	//
545	FixDataCheckHist((TH1D*)obj1);
546	obj1->SetStats(kFALSE);
547	//
548	// set reference lines
549	//
550	// DisplayReferenceLines(obj1,0);
551
552	c1.cd(4);
553	gPad->SetBorderMode(0);
554	obj1->SetPrettyPalette();
555	obj1->Draw();
556
557	c1.cd(7);
558	gPad->SetBorderMode(0);
559	gPad->SetTicks();
560	TH1D obj2 = (TH1D)obj1->Projection(obj1->GetName());
561	obj2->Draw();
562	obj2->SetBit(kCanDelete);
563	obj2->Fit("gaus","Q");
564	TF1 *fun2 = obj2->GetFunction("gaus");
565	fun2->SetLineColor(kYellow);
566	gPad->Modified();
567	gPad->Update();
568	TPaveStats st = (TPaveStats)obj2->GetListOfFunctions()->FindObject("stats");
569	st->SetY1NDC(0.55);
570	st->SetY2NDC(0.89);
571	st->SetX1NDC(0.65);
572	st->SetX2NDC(0.99);
573	gPad->Modified();
574	gPad->Update();
575	//
576	// Set the datacheck sizes:
577	//
578	FixDataCheckHist(obj2);
579	obj2->SetStats(1);
580
581	//
582	// Display the outliers as dead and noisy pixels
583	//
584	DisplayOutliers(obj2,"low-ampl.","high-ampl.");
585	TLatex flattex;
586	flattex.SetTextSize(0.07);
587	const Double_t minl = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
588	const Double_t maxl = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
589	flattex.DrawLatex(minl+0.015*(maxl-minl),obj2->GetBinContent(obj2->GetMaximumBin())/1.35,
590	Form("Flatfield precision: %4.2f%%",
591	fun2->GetParameter(2)/fun2->GetParameter(1)*100.));
592
593	//
594	// RMS per Charge
595	//
596
597	c1.cd(2);
598	gPad->SetBorderMode(0);
599	gPad->SetTicks();
600	MHCamera obj3=(MHCamera)disp36.DrawCopy("hist");
601	//
602	// for the datacheck, fix the ranges!!
603	//
604	// obj3->SetMinimum(0.);
605	// obj3->SetMaximum(fChargeMax);
606	//
607	// Set the datacheck sizes:
608	//
609	FixDataCheckHist((TH1D*)obj3);
610	obj3->SetStats(kFALSE);
611	//
612	// set reference lines
613	//
614	// DisplayReferenceLines(obj3,0);
615
616	c1.cd(5);
617	gPad->SetBorderMode(0);
618	obj3->SetPrettyPalette();
619	obj3->Draw();
620
621	c1.cd(8);
622	gPad->SetBorderMode(0);
623	if (geomcam.InheritsFrom("MGeomCamMagic"))
624	DisplayDoubleProject(&disp36, "dead", "noisy");
625
626	//
627	// PHOTO ELECTRONS
628	//
629
630	c1.cd(3);
631	gPad->SetBorderMode(0);
632	gPad->SetTicks();
633	MHCamera obj4=(MHCamera)disp5.DrawCopy("hist");
634	//
635	// for the datacheck, fix the ranges!!
636	//
637	// obj3->SetMinimum(fChargeMin);
638	// obj3->SetMaximum(fChargeMax);
639	//
640	// Set the datacheck sizes:
641	//
642	FixDataCheckHist((TH1D*)obj4);
643	obj4->SetStats(kFALSE);
644	//
645	// set reference lines
646	//
647	// DisplayReferenceLines(obj3,0);
648
649	c1.cd(6);
650	gPad->SetBorderMode(0);
651	obj4->SetPrettyPalette();
652	obj4->Draw();
653
654	c1.cd(9);
655	gPad->SetBorderMode(0);
656	if (geomcam.InheritsFrom("MGeomCamMagic"))
657	DisplayDoubleProject(&disp5, "dead", "noisy");
658
659	//
660	// CONVERSION FACTORS
661	//
662	TCanvas &c2 = fDisplay->AddTab("Conversion");
663	c2.Divide(3,3);
664
665	c2.cd(1);
666	gPad->SetBorderMode(0);
667	gPad->SetTicks();
668	MHCamera obj5=(MHCamera)disp6.DrawCopy("hist");
669	//
670	// for the datacheck, fix the ranges!!
671	//
672	obj5->SetMinimum(fConvFADC2PheMin);
673	obj5->SetMaximum(fConvFADC2PheMax);
674	//
675	// Set the datacheck sizes:
676	//
677	FixDataCheckHist((TH1D*)obj5);
678	obj5->SetStats(kFALSE);
679	//
680	// set reference lines
681	//
682	DisplayReferenceLines(obj5,2);
683
684	c2.cd(4);
685	gPad->SetBorderMode(0);
686	obj5->SetPrettyPalette();
687	obj5->Draw();
688
689	c2.cd(7);
690	gPad->SetBorderMode(0);
691	if (geomcam.InheritsFrom("MGeomCamMagic"))
692	DisplayDoubleProject(&disp6, "noisy", "dead");
693
694	//
695	// QUANTUM EFFICIENCY
696	//
697	c2.cd(2);
698	gPad->SetBorderMode(0);
699	gPad->SetTicks();
700	MHCamera obj6=(MHCamera)disp8.DrawCopy("hist");
701	//
702	// for the datacheck, fix the ranges!!
703	//
704	obj6->SetMinimum(fQEMin);
705	obj6->SetMaximum(fQEMax);
706	//
707	// Set the datacheck sizes:
708	//
709	FixDataCheckHist((TH1D*)obj6);
710	obj6->SetStats(kFALSE);
711	//
712	// set reference lines
713	//
714	DisplayReferenceLines(obj6,0);
715
716	c2.cd(5);
717	gPad->SetBorderMode(0);
718	obj6->SetPrettyPalette();
719	obj6->Draw();
720
721	c2.cd(8);
722	gPad->SetBorderMode(0);
723	if (geomcam.InheritsFrom("MGeomCamMagic"))
724	DisplayDoubleProject(&disp8, "noisy", "dead");
725
726	//
727	// CONVERSION FADC TO PHOTONS
728	//
729
730	c2.cd(3);
731	gPad->SetBorderMode(0);
732	gPad->SetTicks();
733	MHCamera obj7=(MHCamera)disp35.DrawCopy("hist");
734	//
735	// for the datacheck, fix the ranges!!
736	//
737	obj7->SetMinimum(fConvFADC2PhotMin);
738	obj7->SetMaximum(fConvFADC2PhotMax);
739	//
740	// Set the datacheck sizes:
741	//
742	FixDataCheckHist((TH1D*)obj7);
743	obj7->SetStats(kFALSE);
744	//
745	// set reference lines
746	//
747	DisplayReferenceLines(obj7,1);
748
749	c2.cd(6);
750	gPad->SetBorderMode(0);
751	obj7->SetPrettyPalette();
752	obj7->Draw();
753	c2.cd(9);
754	gPad->SetBorderMode(0);
755	if (geomcam.InheritsFrom("MGeomCamMagic"))
756	DisplayDoubleProject(&disp35, "noisy", "dead");
757
758	//
759	// ARRIVAL TIMES
760	//
761	TCanvas &c3 = fDisplay->AddTab("AbsTimes");
762	c3.Divide(2,3);
763
764	c3.cd(1);
765	gPad->SetBorderMode(0);
766	gPad->SetTicks();
767	MHCamera obj10=(MHCamera)disp28.DrawCopy("hist");
768	//
769	// for the datacheck, fix the ranges!!
770	//
771	obj10->SetMinimum(fArrivalTimeMin);
772	obj10->SetMaximum(fArrivalTimeMax);
773	//
774	// Set the datacheck sizes:
775	//
776	FixDataCheckHist((TH1D*)obj10);
777	obj10->SetStats(kFALSE);
778	//
779	// set reference lines
780	//
781	DisplayReferenceLines(obj10,3);
782
783	c3.cd(3);
784	gPad->SetBorderMode(0);
785	obj10->SetPrettyPalette();
786	obj10->Draw();
787
788	c3.cd(5);
789	gPad->SetBorderMode(0);
790	if (geomcam.InheritsFrom("MGeomCamMagic"))
791	DisplayDoubleProject(&disp28, "early", "late");
792
793	//
794	// ARRIVAL TIMES JITTER
795	//
796	c3.cd(2);
797	gPad->SetBorderMode(0);
798	gPad->SetTicks();
799	MHCamera obj11=(MHCamera)disp29.DrawCopy("hist");
800	//
801	// for the datacheck, fix the ranges!!
802	//
803	// obj11->SetMinimum(fArrivalTimeMin);
804	// obj11->SetMaximum(fArrivalTimeMax);
805	//
806	// Set the datacheck sizes:
807	//
808	FixDataCheckHist((TH1D*)obj11);
809	obj11->SetStats(kFALSE);
810	//
811	// set reference lines
812	//
813	DisplayReferenceLines(obj11,4);
814
815	c3.cd(4);
816	gPad->SetBorderMode(0);
817	obj11->SetPrettyPalette();
818	obj11->Draw();
819
820	c3.cd(6);
821	gPad->SetBorderMode(0);
822	if (geomcam.InheritsFrom("MGeomCamMagic"))
823	DisplayDoubleProject(&disp29, "", "jittering");
824
825	//
826	// UNSUITABLE PIXELS
827	//
828	TCanvas &c4 = fDisplay->AddTab("Defect");
829	c4.Divide(2,2);
830
831	c4.cd(1);
832	gPad->SetBorderMode(0);
833	gPad->SetTicks();
834	MHCamera obj8=(MHCamera)disp24.DrawCopy("hist");
835	//
836	// for the datacheck, fix the ranges!!
837	//
838	const Double_t max = 11.;
839	obj8->SetMinimum(0.);
840	obj8->SetMaximum(11.);
841	//
842	// Set the datacheck sizes:
843	//
844	FixDataCheckHist((TH1D*)obj8);
845	obj8->SetStats(kFALSE);
846
847	gStyle->SetPalette(1);
848	const Int_t numcol = gStyle->GetNumberOfColors()-3;
849
850	TPaveText *pave = new TPaveText(0.0,0.0,0.99,0.99);
851	pave->SetBit(kCanDelete);
852	pave->ConvertNDCtoPad();
853	pave->SetTextSize(0.05);
854	pave->AddText(" ");
855	TText *t1 = pave->AddText(Form("Signal smaller 3 Pedestal RMS: %3i pixels",
856	CountBadPixels(&disp24,1)));
857	t1->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol + 1.)));
858	t1->SetTextAlign(12);
859	TText *t2 = pave->AddText(Form("%s%3i%s","Signal Rel. error too large: ",
860	CountBadPixels(&disp24,2)," pixels"));
861	t2->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol + 1.)));
862	t2->SetTextAlign(12);
863	TText *t4 = pave->AddText(Form("Low Gain Saturation: %3i pixels",
864	CountBadPixels(&disp24,3)));
865	t4->SetTextColor(gStyle->GetColorPalette(Int_t(3./max*numcol + 1.)));
866	t4->SetTextAlign(12);
867	TText *t5 = pave->AddText(Form("Mean Arr. Time In First Extraction Bin: %3i pixels",
868	CountBadPixels(&disp24,4)));
869	t5->SetTextColor(gStyle->GetColorPalette(Int_t(4./max*numcol + 1.)));
870	t5->SetTextAlign(12);
871	TText *t6 = pave->AddText(Form("Mean Arr. Time In Last 2 Extraction Bins: %3i pixels",
872	CountBadPixels(&disp24,5)));
873	t6->SetTextColor(gStyle->GetColorPalette(Int_t(5./max*numcol + 1.)));
874	t6->SetTextAlign(12);
875	TText *t9 = pave->AddText(Form("Deviating Number of Photons: %3i pixels",
876	CountBadPixels(&disp24,6)));
877	t9->SetTextColor(gStyle->GetColorPalette(Int_t(6./max*numcol + 1.)));
878	t9->SetTextAlign(12);
879	TText *t10= pave->AddText(Form("High-Gain Histogram Overflow: %3i pixels",
880	CountBadPixels(&disp24,7 )));
881	t10->SetTextColor(gStyle->GetColorPalette(Int_t(7./max*numcol + 1.)));
882	t10->SetTextAlign(12);
883	TText *t11= pave->AddText(Form("Low-Gain Histogram Overflow: %3i pixels",
884	CountBadPixels(&disp24,8 )));
885	t11->SetTextColor(gStyle->GetColorPalette(Int_t(8./max*numcol + 1.)));
886	t11->SetTextAlign(12);
887	TText *t12= pave->AddText(Form("Previously Excluded: %3i pixels",
888	CountBadPixels(&disp24,9)));
889	t12->SetTextColor(gStyle->GetColorPalette(Int_t(9./max*numcol + 1.)));
890	t12->SetTextAlign(12);
891	pave->Draw();
892
893	c4.cd(3);
894	gPad->SetBorderMode(0);
895	obj8->Draw();
896	obj8->SetPrettyPalette();
897
898	//
899	// UNRELIABLE PIXELS
900	//
901
902	c4.cd(2);
903	gPad->SetBorderMode(0);
904	gPad->SetTicks();
905	MHCamera obj9=(MHCamera)disp25.DrawCopy("hist");
906	//
907	// for the datacheck, fix the ranges!!
908	//
909	const Double_t max2 = 8.;
910	obj9->SetMinimum(0.);
911	obj9->SetMaximum(max2);
912	//
913	// Set the datacheck sizes:
914	//
915	FixDataCheckHist((TH1D*)obj9);
916	obj9->SetStats(kFALSE);
917
918	gStyle->SetPalette(1);
919
920	TPaveText *pave2 = new TPaveText(0.0,0.0,0.99,0.99);
921	pave2->SetBit(kCanDelete);
922	pave2->ConvertNDCtoPad();
923	pave2->SetTextSize(0.05);
924	pave2->AddText(" ");
925	TText *t3 = pave2->AddText(Form("Signal Sigma smaller Pedestal RMS: %3i pixels",
926	CountBadPixels(&disp25,1)));
927	t3->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol + 1.)));
928	t3->SetTextAlign(12);
929
930	TText *t7 = pave2->AddText(Form("Deviating Number of Photo-electrons: %3i pixels",
931	CountBadPixels(&disp25,2)));
932	t7->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol + 1.)));
933	t7->SetTextAlign(12);
934
935	TText *tt1 = pave2->AddText(Form("High Gain Signals could not be fitted: %3i pixels",
936	CountBadPixels(&disp25,3)));
937	tt1->SetTextColor(gStyle->GetColorPalette(Int_t(3./max2*numcol + 1.)));
938	tt1->SetTextAlign(12);
939	TText *tt2 = pave2->AddText(Form("Low Gain Signals could not be fitted: %3i pixels",
940	CountBadPixels(&disp25,4)));
941	tt2->SetTextColor(gStyle->GetColorPalette(Int_t(4./max2*numcol + 1.)));
942	tt2->SetTextAlign(12);
943	TText *tt3 = pave2->AddText(Form("Relative Arr. Times could not be fitted: %3i pixels",
944	CountBadPixels(&disp25,5)));
945	tt3->SetTextColor(gStyle->GetColorPalette(Int_t(5./max2*numcol + 1.)));
946	tt3->SetTextAlign(12);
947	TText *tt4 = pave2->AddText(Form("High Gain Signals Oscillation: %3i pixels",
948	CountBadPixels(&disp25,6)));
949	tt4->SetTextColor(gStyle->GetColorPalette(Int_t(6./max2*numcol + 1.)));
950	tt4->SetTextAlign(12);
951	TText *tt5 = pave2->AddText(Form("Low Gain Signals Oscillation: %3i pixels",
952	CountBadPixels(&disp25,7)));
953	tt5->SetTextColor(gStyle->GetColorPalette(Int_t(7./max2*numcol + 1.)));
954	tt5->SetTextAlign(12);
955	TText *tt6 = pave2->AddText(Form("Relative Arr. Times Oscillation: %3i pixels",
956	CountBadPixels(&disp25,8)));
957	tt6->SetTextColor(gStyle->GetColorPalette(Int_t(8./max2*numcol + 1.)));
958	tt6->SetTextAlign(12);
959	TText *tt8 = pave2->AddText(Form("Deviating global F-Factor: %3i pixels",
960	CountBadPixels(&disp25,9)));
961	tt8->SetTextColor(gStyle->GetColorPalette(Int_t(9./max2*numcol + 1.)));
962	tt8->SetTextAlign(12);
963	pave2->Draw();
964
965	c4.cd(4);
966	gPad->SetBorderMode(0);
967	obj9->SetPrettyPalette();
968	obj9->Draw();
969
970	if (IsRelTimes())
971	{
972	TCanvas &c5 = fDisplay->AddTab("RelTimes");
973	c5.Divide(2,3);
974
975	//
976	// MEAN REL. ARR. TIMES
977	//
978	c5.cd(1);
979	gPad->SetBorderMode(0);
980	gPad->SetTicks();
981	MHCamera obj10=(MHCamera)disp30.DrawCopy("hist");
982	//
983	// for the datacheck, fix the ranges!!
984	//
985	obj10->SetMinimum(fTimeOffsetMin);
986	obj10->SetMaximum(fTimeOffsetMax);
987	//
988	// Set the datacheck sizes:
989	//
990	FixDataCheckHist((TH1D*)obj10);
991	obj10->SetStats(kFALSE);
992	//
993	// set reference lines
994	//
995	DisplayReferenceLines(obj10,5);
996
997	c5.cd(3);
998	gPad->SetBorderMode(0);
999	obj10->SetPrettyPalette();
1000	obj10->Draw();
1001
1002	c5.cd(5);
1003	gPad->SetBorderMode(0);
1004	if (geomcam.InheritsFrom("MGeomCamMagic"))
1005	DisplayDoubleProject(&disp30, "early", "late");
1006
1007	//
1008	// JITTER Rel. Arr. Times
1009	//
1010	c5.cd(2);
1011	gPad->SetBorderMode(0);
1012	gPad->SetTicks();
1013	MHCamera obj11=(MHCamera)disp31.DrawCopy("hist");
1014	//
1015	// for the datacheck, fix the ranges!!
1016	//
1017	obj11->SetMinimum(fTimeResolutionMin);
1018	obj11->SetMaximum(fTimeResolutionMax);
1019	//
1020	// Set the datacheck sizes:
1021	//
1022	FixDataCheckHist((TH1D*)obj11);
1023	obj11->SetStats(kFALSE);
1024	//
1025	// set reference lines
1026	//
1027	DisplayReferenceLines(obj11,6);
1028
1029	c5.cd(4);
1030	gPad->SetBorderMode(0);
1031	obj11->SetPrettyPalette();
1032	obj11->Draw();
1033
1034	c5.cd(6);
1035	gPad->SetBorderMode(0);
1036	if (geomcam.InheritsFrom("MGeomCamMagic"))
1037	DisplayDoubleProject(&disp31, "too stable", "jittering");
1038
1039	}
1040	return;
1041	}
1042
1043	if (fDisplayType == kNormalDisplay)
1044	{
1045
1046	// Charges
1047	TCanvas &c11 = fDisplay->AddTab("FitCharge");
1048	c11.Divide(2, 4);
1049
1050	disp1.CamDraw(c11, 1, 2, 5, 1);
1051	disp2.CamDraw(c11, 2, 2, 5, 1);
1052
1053	// Reduced Sigmas
1054	TCanvas &c12 = fDisplay->AddTab("RedSigma");
1055	c12.Divide(2,4);
1056
1057	disp3.CamDraw(c12, 1, 2, 5, 1);
1058	disp4.CamDraw(c12, 2, 2, 5, 1);
1059
1060	// F-Factor
1061	TCanvas &c13 = fDisplay->AddTab("Phe's");
1062	c13.Divide(3,4);
1063
1064	disp5.CamDraw(c13, 1, 3, 5, 1);
1065	disp6.CamDraw(c13, 2, 3, 5, 1);
1066	disp7.CamDraw(c13, 3, 3, 5, 1);
1067
1068	// QE's
1069	TCanvas &c14 = fDisplay->AddTab("QE's");
1070	c14.Divide(4,4);
1071
1072	disp8.CamDraw(c14, 1, 4, 5, 1);
1073	disp9.CamDraw(c14, 2, 4, 5, 1);
1074	disp10.CamDraw(c14, 3, 4, 5, 1);
1075	disp11.CamDraw(c14, 4, 4, 5, 1);
1076
1077	// Defects
1078	TCanvas &c15 = fDisplay->AddTab("Defect");
1079	// c15.Divide(5,2);
1080	c15.Divide(4,2);
1081
1082	/*
1083	disp23.CamDraw(c15, 1, 5, 0);
1084	disp24.CamDraw(c15, 2, 5, 0);
1085	disp25.CamDraw(c15, 3, 5, 0);
1086	disp26.CamDraw(c15, 4, 5, 0);
1087	disp27.CamDraw(c15, 5, 5, 0);
1088	*/
1089	disp24.CamDraw(c15, 1, 4, 0);
1090	disp25.CamDraw(c15, 2, 4, 0);
1091	disp26.CamDraw(c15, 3, 4, 0);
1092	disp27.CamDraw(c15, 4, 4, 0);
1093
1094	// Abs. Times
1095	TCanvas &c16 = fDisplay->AddTab("AbsTimes");
1096	c16.Divide(2,3);
1097
1098	disp28.CamDraw(c16, 1, 2, 5);
1099	disp29.CamDraw(c16, 2, 2, 5);
1100
1101	if (IsRelTimes())
1102	{
1103	// Rel. Times
1104	TCanvas &c17 = fDisplay->AddTab("RelTimes");
1105	c17.Divide(2,4);
1106
1107	disp30.CamDraw(c17, 1, 2, 5, 1);
1108	disp31.CamDraw(c17, 2, 2, 5, 1);
1109	}
1110
1111	return;
1112	}
1113
1114	if (fDisplayType == kFullDisplay)
1115	{
1116	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationChargeCam");
1117
1118	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1119	{
1120	cam->GetAverageHiGainSector(sector).DrawClone("all");
1121	cam->GetAverageLoGainSector(sector).DrawClone("all");
1122	}
1123
1124	// Charges
1125	TCanvas &c21 = fDisplay->AddTab("FitCharge");
1126	c21.Divide(2, 4);
1127
1128	disp1.CamDraw(c21, 1, 2, 2, 1);
1129	disp2.CamDraw(c21, 2, 2, 2, 1);
1130
1131	// Reduced Sigmas
1132	TCanvas &c23 = fDisplay->AddTab("RedSigma");
1133	c23.Divide(2,4);
1134
1135	disp3.CamDraw(c23, 1, 2, 2, 1);
1136	disp4.CamDraw(c23, 2, 2, 2, 1);
1137
1138	// F-Factor
1139	TCanvas &c24 = fDisplay->AddTab("Phe's");
1140	c24.Divide(3,5);
1141
1142	disp5.CamDraw(c24, 1, 3, 2, 1, 1);
1143	disp6.CamDraw(c24, 2, 3, 2, 1, 1);
1144	disp7.CamDraw(c24, 3, 3, 2, 1, 1);
1145
1146	// QE's
1147	TCanvas &c25 = fDisplay->AddTab("QE's");
1148	c25.Divide(4,5);
1149
1150	disp8.CamDraw(c25, 1, 4, 2, 1, 1);
1151	disp9.CamDraw(c25, 2, 4, 2, 1, 1);
1152	disp10.CamDraw(c25, 3, 4, 2, 1, 1);
1153	disp11.CamDraw(c25, 4, 4, 2, 1, 1);
1154
1155	// Validity
1156	TCanvas &c26 = fDisplay->AddTab("Valid");
1157	c26.Divide(4,2);
1158
1159	disp12.CamDraw(c26, 1, 4, 0);
1160	disp13.CamDraw(c26, 2, 4, 0);
1161	disp14.CamDraw(c26, 3, 4, 0);
1162	disp15.CamDraw(c26, 4, 4, 0);
1163
1164	// Other info
1165	TCanvas &c27 = fDisplay->AddTab("HiLoGain");
1166	c27.Divide(3,3);
1167
1168	disp16.CamDraw(c27, 1, 3, 0);
1169	disp17.CamDraw(c27, 2, 3, 1);
1170	disp18.CamDraw(c27, 3, 3, 1);
1171
1172	// Pickup
1173	TCanvas &c28 = fDisplay->AddTab("Pickup");
1174	c28.Divide(4,2);
1175
1176	disp19.CamDraw(c28, 1, 4, 0);
1177	disp20.CamDraw(c28, 2, 4, 0);
1178	disp21.CamDraw(c28, 3, 4, 0);
1179	disp22.CamDraw(c28, 4, 4, 0);
1180
1181	// Defects
1182	TCanvas &c29 = fDisplay->AddTab("Defect");
1183	// c29.Divide(5,2);
1184	c29.Divide(4,2);
1185
1186	disp24.CamDraw(c29, 1, 4, 0);
1187	disp25.CamDraw(c29, 2, 4, 0);
1188	disp26.CamDraw(c29, 3, 4, 0);
1189	disp27.CamDraw(c29, 4, 4, 0);
1190
1191	// Abs. Times
1192	TCanvas &c30 = fDisplay->AddTab("AbsTimes");
1193	c30.Divide(2,3);
1194
1195	disp28.CamDraw(c30, 1, 2, 2);
1196	disp29.CamDraw(c30, 2, 2, 1);
1197
1198	if (IsRelTimes())
1199	{
1200	// Rel. Times
1201	TCanvas &c31 = fDisplay->AddTab("RelTimes");
1202	c31.Divide(3,5);
1203
1204	disp30.CamDraw(c31, 1, 3, 2, 1, 1);
1205	disp31.CamDraw(c31, 2, 3, 2, 1, 1);
1206	disp32.CamDraw(c31, 3, 3, 4, 1, 1);
1207
1208	// Time Defects
1209	TCanvas &c32 = fDisplay->AddTab("DefTime");
1210	c32.Divide(2,2);
1211
1212	disp33.CamDraw(c32, 1, 2, 0);
1213	disp34.CamDraw(c32, 2, 2, 0);
1214
1215	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationRelTimeCam");
1216
1217	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1218	{
1219	cam->GetAverageHiGainSector(sector).DrawClone("fourierevents");
1220	cam->GetAverageLoGainSector(sector).DrawClone("fourierevents");
1221	}
1222
1223	}
1224
1225	return;
1226	}
1227	}
1228
1229
1230	void MJCalibration::DisplayReferenceLines(MHCamera *cam, const Int_t what) const
1231	{
1232
1233	const MGeomCam *geom = cam->GetGeometry();
1234
1235	Double_t x = geom->InheritsFrom("MGeomCamMagic") ? 397 : cam->GetNbinsX() ;
1236
1237	TLine line;
1238	line.SetLineStyle(kDashed);
1239	line.SetLineWidth(3);
1240	line.SetLineColor(kBlue);
1241
1242	TLine *l1 = NULL;
1243
1244	switch (what)
1245	{
1246	case 0:
1247	l1 = line.DrawLine(0, fRefQEInner, x, fRefQEInner);
1248	break;
1249	case 1:
1250	l1 = line.DrawLine(0, fRefConvFADC2PhotInner, x, fRefConvFADC2PhotInner);
1251	break;
1252	case 2:
1253	l1 = line.DrawLine(0, fRefConvFADC2PheInner, x, fRefConvFADC2PheInner );
1254	break;
1255	case 3:
1256	l1 = line.DrawLine(0, fRefArrivalTimeInner, x, fRefArrivalTimeInner );
1257	break;
1258	case 4:
1259	l1 = line.DrawLine(0, fRefArrivalTimeRmsInner, x, fRefArrivalTimeRmsInner );
1260	break;
1261	case 5:
1262	l1 = line.DrawLine(0, fRefTimeOffsetInner, x, fRefTimeOffsetInner );
1263	break;
1264	case 6:
1265	l1 = line.DrawLine(0, fRefTimeResolutionInner, x, fRefTimeResolutionInner );
1266	break;
1267	default:
1268	break;
1269	}
1270
1271	if (geom->InheritsFrom("MGeomCamMagic"))
1272	{
1273	const Double_t x2 = cam->GetNbinsX();
1274
1275	switch (what)
1276	{
1277	case 0:
1278	line.DrawLine(x2, fRefQEOuter, 398, fRefQEOuter);
1279	break;
1280	case 1:
1281	line.DrawLine(x2, fRefConvFADC2PhotOuter, 398, fRefConvFADC2PhotOuter );
1282	break;
1283	case 2:
1284	line.DrawLine(x2, fRefConvFADC2PheOuter, 398, fRefConvFADC2PheOuter);
1285	break;
1286	case 3:
1287	line.DrawLine(x2, fRefArrivalTimeOuter, 398, fRefArrivalTimeOuter);
1288	break;
1289	case 4:
1290	line.DrawLine(x2, fRefArrivalTimeRmsOuter, 398, fRefArrivalTimeRmsOuter);
1291	break;
1292	case 5:
1293	line.DrawLine(x2, fRefTimeOffsetOuter, 398, fRefTimeOffsetOuter);
1294	break;
1295	case 6:
1296	line.DrawLine(x2, fRefTimeResolutionOuter, 398, fRefTimeResolutionOuter);
1297	break;
1298	default:
1299	break;
1300	}
1301	}
1302
1303	TLegend *leg = new TLegend(0.6,0.85,0.9 ,0.95);
1304	leg->SetBit(kCanDelete);
1305	leg->AddEntry(l1, "Reference","l");
1306	leg->Draw();
1307	}
1308
1309	void MJCalibration::DisplayOutliers(TH1D hist, const char whatsmall, const char* whatbig) const
1310	{
1311
1312	const Int_t kNotDraw = 1<<9;
1313	TF1 *f = hist->GetFunction("gaus");
1314	f->ResetBit(kNotDraw);
1315
1316	const Float_t mean = f->GetParameter(1);
1317	const Float_t lolim = mean - 4.0*f->GetParameter(2);
1318	const Float_t uplim = mean + 4.0*f->GetParameter(2);
1319	const Stat_t dead = hist->Integral(0,hist->FindBin(lolim)-1);
1320	const Stat_t noisy = hist->Integral(hist->FindBin(uplim)+1,hist->GetNbinsX()+1);
1321
1322	const Double_t max = hist->GetBinContent(hist->GetMaximumBin());
1323
1324	const Double_t minl = hist->GetBinCenter(hist->GetXaxis()->GetFirst());
1325	const Double_t maxl = hist->GetBinCenter(hist->GetXaxis()->GetLast());
1326
1327	TLatex deadtex;
1328	deadtex.SetTextSize(0.07);
1329	deadtex.DrawLatex(minl+0.015*(maxl-minl),max/1.1,
1330	Form("%3i %s pixels",(Int_t)dead,whatsmall));
1331
1332	TLatex noisytex;
1333	noisytex.SetTextSize(0.07);
1334	noisytex.DrawLatex(minl+0.015*(maxl-minl),max/1.2,
1335	Form("%3i %s pixels",(Int_t)noisy,whatbig));
1336
1337	}
1338
1339	void MJCalibration::FixDataCheckHist(TH1D *hist) const
1340	{
1341
1342	hist->SetDirectory(NULL);
1343
1344	//
1345	// set the labels bigger
1346	//
1347	TAxis *xaxe = hist->GetXaxis();
1348	TAxis *yaxe = hist->GetYaxis();
1349
1350	xaxe->CenterTitle();
1351	yaxe->CenterTitle();
1352	xaxe->SetTitleSize(0.06);
1353	yaxe->SetTitleSize(0.06);
1354	xaxe->SetTitleOffset(0.8);
1355	yaxe->SetTitleOffset(0.85);
1356	xaxe->SetLabelSize(0.05);
1357	yaxe->SetLabelSize(0.05);
1358
1359	}
1360
1361	const Int_t MJCalibration::CountBadPixels ( MHCamera *cam , const Int_t what ) const
1362	{
1363
1364	Int_t cnt = 0;
1365
1366	for (UInt_t pix=0; pix<cam->GetNumPixels();pix++)
1367	if ((Int_t)cam->GetPixContent(pix) == what)
1368	cnt++;
1369
1370	return cnt;
1371	}
1372
1373	// --------------------------------------------------------------------------
1374	//
1375	// Retrieve the output file written by WriteResult()
1376	//
1377	const char* MJCalibration::GetOutputFile() const
1378	{
1379	const TString name(GetOutputFileName());
1380	if (name.IsNull())
1381	return "";
1382
1383	return Form("%s/%s", fPathOut.Data(), name.Data());
1384	}
1385
1386	const char* MJCalibration::GetOutputFileName() const
1387	{
1388
1389	if (fSequence.IsValid())
1390	return Form("calib%08d.root", fSequence.GetSequence());
1391	if (!fRuns)
1392	return "";
1393
1394	return Form("%s-F1.root", (const char*)fRuns->GetRunsAsFileName());
1395	}
1396
1397	// --------------------------------------------------------------------------
1398	//
1399	// Read the following values from resource file:
1400	//
1401	// ConvFADC2PheMin
1402	// ConvFADC2PheMax
1403	// ConvFADC2PhotMin
1404	// ConvFADC2PhotMax
1405	//
1406	// QEMin
1407	// QEMax
1408	//
1409	// ArrivalTimeMin
1410	// ArrivalTimeMax
1411	//
1412	// TimeOffsetMin
1413	// TimeOffsetMax
1414	// TimeResolutionMin
1415	// TimeResolutionMax
1416	//
1417	// RefConvFADC2PheInner
1418	// RefConvFADC2PheOuter
1419	// RefConvFADC2PhotInner
1420	// RefConvFADC2PhotOuter
1421	//
1422	// RefQEInner
1423	// RefQEOuter
1424	//
1425	// RefArrivalTimeInner
1426	// RefArrivalTimeOuter
1427	// RefArrivalTimeRmsInner
1428	// RefArrivalTimeRmsOuter
1429	//
1430	// RefTimeOffsetInner
1431	// RefTimeOffsetOuter
1432	// RefTimeResolutionInner
1433	// RefTimeResolutionOuter
1434	//
1435	void MJCalibration::ReadReferenceFile()
1436	{
1437	TEnv refenv(fReferenceFile);
1438
1439	fConvFADC2PheMin = refenv.GetValue("ConvFADC2PheMin",fConvFADC2PheMin);
1440	fConvFADC2PheMax = refenv.GetValue("ConvFADC2PheMax",fConvFADC2PheMax);
1441	fConvFADC2PhotMin = refenv.GetValue("ConvFADC2PhotMin",fConvFADC2PhotMin);
1442	fConvFADC2PhotMax = refenv.GetValue("ConvFADC2PhotMax",fConvFADC2PhotMax);
1443	fQEMin = refenv.GetValue("QEMin",fQEMin);
1444	fQEMax = refenv.GetValue("QEMax",fQEMax);
1445	fArrivalTimeMin = refenv.GetValue("ArrivalTimeMin",fArrivalTimeMin);
1446	fArrivalTimeMax = refenv.GetValue("ArrivalTimeMax",fArrivalTimeMax);
1447	fTimeOffsetMin = refenv.GetValue("TimeOffsetMin",fTimeOffsetMin);
1448	fTimeOffsetMax = refenv.GetValue("TimeOffsetMax",fTimeOffsetMax);
1449	fTimeResolutionMin = refenv.GetValue("TimeResolutionMin",fTimeResolutionMin);
1450	fTimeResolutionMax = refenv.GetValue("TimeResolutionMax",fTimeResolutionMax);
1451
1452	fRefConvFADC2PheInner = refenv.GetValue("RefConvFADC2PheInner",fRefConvFADC2PheInner);
1453	fRefConvFADC2PheOuter = refenv.GetValue("RefConvFADC2PheOuter",fRefConvFADC2PheOuter);
1454	fRefConvFADC2PhotInner = refenv.GetValue("RefConvFADC2PhotInner",fRefConvFADC2PhotInner);
1455	fRefConvFADC2PhotOuter = refenv.GetValue("RefConvFADC2PhotOuter",fRefConvFADC2PhotOuter);
1456	fRefQEInner = refenv.GetValue("RefQEInner",fRefQEInner);
1457	fRefQEOuter = refenv.GetValue("RefQEOuter",fRefQEOuter);
1458	fRefArrivalTimeInner = refenv.GetValue("RefArrivalTimeInner",fRefArrivalTimeInner);
1459	fRefArrivalTimeOuter = refenv.GetValue("RefArrivalTimeOuter",fRefArrivalTimeOuter);
1460	fRefArrivalTimeRmsInner = refenv.GetValue("RefArrivalTimeRmsInner",fRefArrivalTimeRmsInner);
1461	fRefArrivalTimeRmsOuter = refenv.GetValue("RefArrivalTimeRmsOuter",fRefArrivalTimeRmsOuter);
1462	fRefTimeOffsetInner = refenv.GetValue("RefTimeOffsetInner",fRefTimeOffsetInner);
1463	fRefTimeOffsetOuter = refenv.GetValue("RefTimeOffsetOuter",fRefTimeOffsetOuter);
1464	fRefTimeResolutionInner = refenv.GetValue("RefTimeResolutionInner",fRefTimeResolutionInner);
1465	fRefTimeResolutionOuter = refenv.GetValue("RefTimeResolutionOuter",fRefTimeResolutionOuter);
1466	}
1467
1468	// --------------------------------------------------------------------------
1469	//
1470	// Read the following values from resource file:
1471	//
1472	// MCalibrationHiLoCam
1473	//
1474	Bool_t MJCalibration::ReadHiLoCalibFile()
1475	{
1476
1477	if (!fIsHiLoCalibration)
1478	return kTRUE;
1479
1480	TFile file(fHiLoCalibFile,"READ");
1481
1482	MCalibrationHiLoCam hilocam;
1483
1484	*fLog << all << "Initializing High gain vs. Low gain intercalibration from " << fHiLoCalibFile << endl;
1485	*fLog << all << endl;
1486
1487	if (hilocam.Read()<=0)
1488	{
1489	*fLog << err << "Unable to read MCalibrationHiLoCam from " << fHiLoCalibFile << endl;
1490	return kFALSE;
1491	}
1492
1493	if (hilocam.GetSize() < 1)
1494	{
1495	*fLog << err << "MCalibationHiLoCam is un-initialized in file " << fHiLoCalibFile << endl;
1496	return kFALSE;
1497	}
1498
1499	if (fCalibrationCam.GetSize() < 1)
1500	fCalibrationCam.InitSize(hilocam.GetSize());
1501
1502	if (fBadPixels.GetSize() < 1)
1503	fBadPixels.InitSize(hilocam.GetSize());
1504
1505	if (fCalibrationCam.GetSize() != hilocam.GetSize())
1506	{
1507	*fLog << err << "Size mismatch MCalibationHiLoCam and MCalibrationChargeCam " << endl;
1508	return kFALSE;
1509	}
1510
1511	for (Int_t i=0;i<hilocam.GetSize();i++)
1512	{
1513	const MCalibrationHiLoPix &pix = (MCalibrationHiLoPix&)hilocam[i];
1514
1515	const Float_t ratio = pix.GetHiLoChargeRatio();
1516	const Float_t sigma = pix.GetHiLoChargeRatioSigma();
1517
1518	if (ratio < 0.)
1519	{
1520	fBadPixels[i].SetUncalibrated(MBadPixelsPix::kConversionHiLoNotValid);
1521	continue;
1522	}
1523
1524	MCalibrationChargePix &cpix = (MCalibrationChargePix&)fCalibrationCam[i];
1525
1526	cpix.SetConversionHiLo(ratio);
1527	cpix.SetConversionHiLoErr(sigma);
1528	}
1529
1530	return kTRUE;
1531	}
1532
1533	// --------------------------------------------------------------------------
1534	//
1535	// MJCalibration allows to setup several option by a resource file:
1536	// MJCalibration.Display: full, datacheck, normal
1537	// MJCalibration.RelTimeCalibration: yes,no
1538	// MJCalibration.DataCheck: yes,no
1539	// MJCalibration.Debug: yes,no
1540	// MJCalibration.Intensity: yes,no
1541	// MJCalibration.UseBlindPixel: yes,no
1542	// MJCalibration.UsePINDiode: yes,no
1543	// MJCalibration.Geometry: MGeomCamMagic, MGeomCamECO1000
1544	//
1545	// Name of a file containing reference values (see ReadReferenceFile)
1546	// Prefix.ReferenceFile: filename
1547	// (see ReadReferenceFile)
1548	//
1549	// For more details see the class description and the corresponding Getters
1550	//
1551	Bool_t MJCalibration::CheckEnvLocal()
1552	{
1553
1554	TString dis = GetEnv("Display", "");
1555	if (dis.BeginsWith("Full", TString::kIgnoreCase))
1556	SetFullDisplay();
1557	if (dis.BeginsWith("DataCheck", TString::kIgnoreCase))
1558	SetDataCheckDisplay();
1559	if (dis.BeginsWith("Normal", TString::kIgnoreCase))
1560	SetNormalDisplay();
1561
1562	if (!MJCalib::CheckEnvLocal())
1563	return kFALSE;
1564
1565	SetRelTimeCalibration(GetEnv("RelTimeCalibration", IsRelTimes()));
1566	SetIntensity(GetEnv("IntensityCalibration", IsIntensity()));
1567	SetDebug(GetEnv("Debug", IsDebug()));
1568
1569	SetUseBlindPixel(GetEnv("UseBlindPixel", IsUseBlindPixel()));
1570	SetUsePINDiode(GetEnv("UsePINDiode", IsUsePINDiode()));
1571	SetGeometry(GetEnv("Geometry", fGeometry));
1572
1573	fReferenceFile = GetEnv("ReferenceFile",fReferenceFile.Data());
1574	ReadReferenceFile();
1575
1576	fHiLoCalibFile = GetEnv("HiLoCalibFile",fHiLoCalibFile.Data());
1577
1578	return ReadHiLoCalibFile();
1579	}
1580
1581	// --------------------------------------------------------------------------
1582	//
1583	// Call the ProcessFile(MPedestalCam)
1584	//
1585	Bool_t MJCalibration::Process(MPedestalCam &pedcam)
1586	{
1587	if (!ReadCalibrationCam())
1588	return ProcessFile(pedcam);
1589
1590	return kTRUE;
1591	}
1592
1593	void MJCalibration::InitBlindPixel(MExtractBlindPixel &blindext,
1594	MHCalibrationChargeBlindCam &blindcam)
1595	{
1596
1597	Int_t run = fSequence.IsValid() ? fSequence.GetLastRun() : fRuns->GetRuns()[fRuns->GetNumRuns()-1];
1598
1599	//
1600	// Initialize the blind pixel. Unfortunately, there is a hardware difference
1601	// in the first blind pixel until run "gkSecondBlindPixelInstallation" and the
1602	// later setup. The first needs to use a filter because of the length of
1603	// spurious NSB photon signals. The latter get better along extracting the amplitude
1604	// from a small window.
1605	//
1606	if (run < gkSecondBlindPixelInstallation)
1607	{
1608	MCalibrationBlindCamOneOldStyle blindresults;
1609	if (IsIntensity())
1610	blindresults.Copy(*fIntensBlindCam.GetCam());
1611	else
1612	blindresults.Copy(fCalibrationBlindCam);
1613
1614	blindext.SetExtractionType(MExtractBlindPixel::kIntegral);
1615	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1616	blindext.SetRange(10,19,0,6);
1617	blindext.SetNSBFilterLimit(70);
1618	}
1619	else if (run < gkThirdBlindPixelInstallation)
1620	{
1621
1622	MCalibrationBlindCamTwoNewStyle blindresults;
1623
1624	if (IsIntensity())
1625	blindresults.Copy(*fIntensBlindCam.GetCam());
1626	else
1627	blindresults.Copy(fCalibrationBlindCam);
1628
1629	blindext.SetNumBlindPixels(blindresults.GetSize());
1630	for (Int_t i=0;i<blindresults.GetSize();i++)
1631	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1632
1633	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1634	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1635	blindext.SetRange(5,8,0,2);
1636	blindext.SetNSBFilterLimit(38);
1637
1638	}
1639	else
1640	{
1641
1642	MCalibrationBlindCamThreeNewStyle blindresults;
1643
1644	if (IsIntensity())
1645	blindresults.Copy(*fIntensBlindCam.GetCam());
1646	else
1647	blindresults.Copy(fCalibrationBlindCam);
1648
1649	blindext.SetNumBlindPixels(blindresults.GetSize());
1650
1651	for (Int_t i=0;i<blindresults.GetSize();i++)
1652	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1653
1654	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1655	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1656	blindext.SetDataType(MExtractBlindPixel::kRawEvt2);
1657	blindext.SetRange(5,8,0,2);
1658	blindext.SetNSBFilterLimit(38);
1659
1660	}
1661
1662	}
1663
1664	// --------------------------------------------------------------------------
1665	//
1666	// Execute the task list and the eventloop:
1667	//
1668	// - Check if there are fRuns, otherwise return
1669	// - Check the colour of the files in fRuns (FindColor()), otherwise return
1670	// - Check for consistency between run numbers and number of files
1671	// - Add fRuns to MReadMarsFile
1672	// - Put into MParList:
1673	// 1) MPedestalCam (pedcam)
1674	// 2) MCalibrationQECam (fQECam)
1675	// 3) MCalibrationChargeCam (fCalibrationCam)
1676	// 4) MCalibrationRelTimeCam (fRelTimeCam) (only if flag IsRelTimes() is chosen)
1677	// 5) MBadPixelsCam (fBadPixels)
1678	// 6) MCalibrationChargePINDiode
1679	// 7) MCalibrationBlindPix
1680	// - Put into the MTaskList:
1681	// 1) MReadMarsFile
1682	// 2) MBadPixelsMerge
1683	// 3) MGeomApply
1684	// 4) MExtractor
1685	// 5) MExtractPINDiode
1686	// 6) MExtractBlindPixel
1687	// 7) MExtractTime (only if flag IsRelTimes() is chosen)
1688	// 8) MContinue(MFCosmics)
1689	// 9) MFillH("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode")
1690	// 10) MFillH("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam")
1691	// 11) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam")
1692	// 12) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillRelTime")
1693	// 13) MCalibrationChargeCalc
1694	// 14) MFillH("MHCalibrationRelTimeCam", "MArrivalTimeCam") (only if flag IsRelTimes() is chosen)
1695	// 15) MCalibrationRelTimeCalc
1696	// - Execute MEvtLoop
1697	// - DisplayResult()
1698	// - WriteResult()
1699	//
1700	Bool_t MJCalibration::ProcessFile(MPedestalCam &pedcam)
1701	{
1702	if (!fSequence.IsValid())
1703	{
1704	if (!fRuns)
1705	{
1706	*fLog << err << "No Runs choosen... abort." << endl;
1707	return kFALSE;
1708	}
1709
1710	if (fRuns->GetNumRuns() != fRuns->GetNumEntries())
1711	{
1712	*fLog << err << "Number of files found doesn't match number of runs... abort."
1713	<< fRuns->GetNumRuns() << " vs. " << fRuns->GetNumEntries() << endl;
1714	return kFALSE;
1715	}
1716	}
1717
1718	// --------------------------------------------------------------------------------
1719
1720	*fLog << inf;
1721	fLog->Separator(GetDescriptor());
1722
1723	*fLog << "Calculate MCalibrationCam from ";
1724	if (fSequence.IsValid())
1725	*fLog << "Sequence #" << fSequence.GetSequence() << endl;
1726	else
1727	*fLog << "Runs " << fRuns->GetRunsAsString() << endl;
1728	*fLog << endl;
1729
1730	// --------------------------------------------------------------------------------
1731
1732	if (!CheckEnv())
1733	return kFALSE;
1734
1735	// --------------------------------------------------------------------------------
1736
1737	// Setup Tasklist
1738	MParList plist;
1739	MTaskList tlist;
1740	plist.AddToList(&tlist);
1741	plist.AddToList(this); // take care of fDisplay!
1742
1743	MDirIter iter;
1744	if (fSequence.IsValid())
1745	{
1746	const Int_t n0 = fSequence.SetupCalRuns(iter, fPathData, "C", IsUseRawData());
1747	const Int_t n1 = fSequence.GetNumCalRuns();
1748	if (n0==0)
1749	{
1750	*fLog << err << "ERROR - No input files of sequence found!" << endl;
1751	return kFALSE;
1752	}
1753	if (n0!=n1)
1754	{
1755	*fLog << err << "ERROR - Number of files found ("
1756	<< n0 << ") doesn't match number of files in sequence ("
1757	<< n1 << ")" << endl;
1758	return kFALSE;
1759	}
1760	}
1761
1762	//
1763	// Input containers
1764	//
1765	pedcam.SetName("MPedestalCam"); // MPedestalFundamental
1766	plist.AddToList(&pedcam);
1767	plist.AddToList(&fBadPixels);
1768
1769	//
1770	// Calibration Results containers
1771	//
1772	if (IsIntensity())
1773	{
1774	plist.AddToList(&fIntensQECam);
1775	plist.AddToList(&fIntensCalibCam);
1776	plist.AddToList(&fIntensBlindCam);
1777	// plist.AddToList(&fIntensCalibrationPINDiode);
1778	plist.AddToList(&fIntensRelTimeCam);
1779	plist.AddToList(&fIntensBadCam);
1780	}
1781	else
1782	{
1783	plist.AddToList(&fQECam);
1784	plist.AddToList(&fCalibrationCam);
1785	plist.AddToList(&fCalibrationBlindCam);
1786	plist.AddToList(&fCalibrationPINDiode);
1787	plist.AddToList(&fRelTimeCam);
1788	}
1789
1790	//
1791	// Initialize two histogram containers which could be modified in this class
1792	//
1793	MHCalibrationRelTimeCam reltimecam;
1794	MHCalibrationChargeCam chargecam;
1795	MHCalibrationChargeBlindCam blindcam;
1796	plist.AddToList(&chargecam);
1797
1798	if (IsUseBlindPixel())
1799	plist.AddToList(&blindcam);
1800	if (IsRelTimes())
1801	plist.AddToList(&reltimecam);
1802	//
1803	// Data Reading tasks
1804	//
1805	MReadMarsFile read("Events");
1806	MRawFileRead rawread(NULL);
1807
1808	if (IsUseRawData())
1809	{
1810	rawread.AddFiles(fSequence.IsValid() ? iter : *fRuns);
1811	tlist.AddToList(&rawread);
1812	}
1813	else
1814	{
1815	read.DisableAutoScheme();
1816	read.AddFiles(fSequence.IsValid() ? iter : *fRuns);
1817	tlist.AddToList(&read);
1818	}
1819
1820	//
1821	// Other Tasks
1822	//
1823	MCalibrationPatternDecode decode;
1824	MGeomApply apply;
1825	apply.SetGeometry(fGeometry);
1826
1827	MBadPixelsMerge merge(&fBadPixels);
1828	MExtractPINDiode pinext;
1829	MExtractBlindPixel blindext;
1830
1831	InitBlindPixel(blindext, blindcam);
1832
1833	MExtractSlidingWindow extract2;
1834	MExtractTimeHighestIntegral timehigh;
1835	MCalibrationChargeCalc calcalc;
1836	MCalibrationRelTimeCalc timecalc;
1837	calcalc.SetOutputFile("");
1838	timecalc.SetOutputFile("");
1839
1840	if (!fSequence.IsValid())
1841	{
1842	calcalc.SetOutputPath(fPathOut);
1843	calcalc.SetOutputFile(Form("%s-ChargeCalibStat.txt",(const char*)fRuns->GetRunsAsFileName()));
1844	timecalc.SetOutputPath(fPathOut);
1845	timecalc.SetOutputFile(Form("%s-ChargeCalibStat.txt",(const char*)fRuns->GetRunsAsFileName()));
1846	}
1847
1848	if (IsDebug())
1849	{
1850	chargecam.SetDebug();
1851	calcalc.SetDebug();
1852	}
1853
1854	//
1855	// Calibration histogramming
1856	//
1857	MFillH fillpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
1858	MFillH fillbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
1859	MFillH fillcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
1860	MFillH filltme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
1861	fillpin.SetBit(MFillH::kDoNotDisplay);
1862	fillbnd.SetBit(MFillH::kDoNotDisplay);
1863	fillcam.SetBit(MFillH::kDoNotDisplay);
1864	filltme.SetBit(MFillH::kDoNotDisplay);
1865
1866	//
1867	// Set default extractors in case, none has been set...
1868	//
1869	if (!fExtractor)
1870	fExtractor = &extract2;
1871	if (!fTimeExtractor)
1872	fTimeExtractor = &timehigh;
1873
1874	const Bool_t istimecharge = fExtractor->InheritsFrom("MExtractTimeAndCharge");
1875	//
1876	// Look if the extractor is a pure charge or also a time extractor
1877	//
1878	if (istimecharge)
1879	{
1880	if (fExtractorCam.GetSize() == pedcam.GetSize())
1881	calcalc.SetPedestals(&fExtractorCam);
1882	else
1883	{
1884	*fLog << err << GetDescriptor() << "ERROR - ";
1885	*fLog << "Used Extractor derives from MExtractTimeAndCharge, " << endl;
1886	*fLog << "but MExtractorCam size " << fExtractorCam.GetSize() << " ";
1887	*fLog << "mismatch pedcam size " << pedcam.GetSize() << "! " << endl;
1888	return kFALSE;
1889	}
1890	}
1891
1892	//
1893	// Setup more tasks and tasklist
1894	//
1895	MTaskEnv taskenv("ExtractSignal");
1896	taskenv.SetDefault(fExtractor);
1897
1898	tlist.AddToList(&decode);
1899	tlist.AddToList(&merge);
1900	tlist.AddToList(&apply);
1901
1902	MPedCalcPedRun pedcalc;
1903	pedcalc.SetExtractWindow(fExtractor->GetHiGainFirst(),TMath::Nint(fExtractor->GetNumHiGainSamples()));
1904
1905	if (IsIntensity())
1906	tlist.AddToList(&pedcalc);
1907
1908	MCalibColorSet colorset;
1909	tlist.AddToList(&colorset);
1910
1911	tlist.AddToList(&taskenv);
1912
1913	if (IsUsePINDiode())
1914	tlist.AddToList(&pinext);
1915	if (IsUseBlindPixel())
1916	tlist.AddToList(&blindext);
1917
1918	MTaskEnv taskenv2("ExtractTime");
1919	if (!istimecharge)
1920	{
1921	taskenv2.SetDefault(fTimeExtractor);
1922
1923	if (IsRelTimes())
1924	tlist.AddToList(&taskenv2);
1925	}
1926
1927	//
1928	// Apply a filter against cosmics
1929	// (will have to be needed in the future
1930	// when the calibration hardware-trigger is working)
1931	//
1932	MFCosmics cosmics;
1933	MContinue cont(&cosmics);
1934
1935	if (fColor == MCalibrationCam::kCT1)
1936	tlist.AddToList(&cont);
1937
1938	MCalibColorSteer steer;
1939	if (IsIntensity())
1940	tlist.AddToList(&steer);
1941
1942	tlist.AddToList(&fillcam);
1943
1944	if (IsRelTimes())
1945	{
1946	tlist.AddToList(&filltme);
1947	tlist.AddToList(&timecalc);
1948	}
1949
1950	if (IsUseBlindPixel())
1951	tlist.AddToList(&fillbnd);
1952	if (IsUsePINDiode())
1953	tlist.AddToList(&fillpin);
1954
1955	tlist.AddToList(&calcalc);
1956
1957	// Create and setup the eventloop
1958	MEvtLoop evtloop(fName);
1959	evtloop.SetParList(&plist);
1960	evtloop.SetDisplay(fDisplay);
1961	evtloop.SetLogStream(fLog);
1962	if (!SetupEnv(evtloop))
1963	return kFALSE;
1964
1965	if (!taskenv.GetTask() && !taskenv2.GetTask())
1966	{
1967	*fLog << err << "ERROR - Neither ExtractSignal nor ExtractTime initialized or both '<dummy>'." << endl;
1968	return kFALSE;
1969	}
1970
1971	if (!WriteTasks(taskenv.GetTask(), istimecharge ? 0 : taskenv2.GetTask()))
1972	return kFALSE;
1973
1974	// Execute first analysis
1975	if (!evtloop.Eventloop())
1976	{
1977	DisplayResult(plist);
1978	WriteResult(plist);
1979	*fLog << err << GetDescriptor() << ": Failed." << endl;
1980	return kFALSE;
1981	}
1982
1983	tlist.PrintStatistics();
1984
1985	// --------------------------------------------------------------------------------
1986
1987	if (fIsPixelCheck)
1988	{
1989	MHCalibrationChargeCam hcam = (MHCalibrationChargeCam)plist.FindObject("MHCalibrationChargeCam");
1990	MHCalibrationChargePix &pix1 = (MHCalibrationChargePix&)(*hcam)[fCheckedPixId];
1991	pix1.DrawClone("");
1992
1993	MHCalibrationChargePix &pix2 = (MHCalibrationChargePix&)(*hcam)(fCheckedPixId);
1994	pix2.DrawClone("");
1995
1996	if (IsRelTimes())
1997	{
1998	MHCalibrationRelTimeCam hccam = (MHCalibrationRelTimeCam)plist.FindObject("MHCalibrationRelTimeCam");
1999	MHCalibrationPix &pix11 = (*hccam)[fCheckedPixId];
2000	pix11.DrawClone("");
2001	MHCalibrationPix &pix12 = (*hccam)(fCheckedPixId);
2002	pix12.DrawClone("");
2003	}
2004	}
2005
2006	if (!fCalibrationPINDiode.IsValid())
2007	SetUsePINDiode(kFALSE);
2008
2009	DisplayResult(plist);
2010
2011	if (!WriteResult(plist))
2012	return kFALSE;
2013
2014	*fLog << all << GetDescriptor() << ": Done." << endl;
2015
2016	return kTRUE;
2017	}
2018
2019	// --------------------------------------------------------------------------
2020	//
2021	// Read the following containers from GetOutputFile()
2022	// - MCalibrationChargeCam
2023	// - MCalibrationQECam
2024	// - MBadPixelsCam
2025	//
2026	Bool_t MJCalibration::ReadCalibrationCam()
2027	{
2028
2029	if (IsNoStorage())
2030	return kFALSE;
2031
2032	const TString fname = GetOutputFile();
2033
2034	if (gSystem->AccessPathName(fname, kFileExists))
2035	{
2036	*fLog << err << "Input file " << fname << " doesn't exist." << endl;
2037	return kFALSE;
2038	}
2039
2040	*fLog << inf << "Reading from file: " << fname << endl;
2041
2042	TFile file(fname, "READ");
2043	if (fCalibrationCam.Read()<=0)
2044	{
2045	*fLog << err << "Unable to read MCalibrationChargeCam from " << fname << endl;
2046	return kFALSE;
2047	}
2048
2049	if (fQECam.Read()<=0)
2050	{
2051	*fLog << err << "Unable to read MCalibrationQECam from " << fname << endl;
2052	return kFALSE;
2053	}
2054
2055
2056	if (file.FindKey("MCalibrationRelTimeCam"))
2057	if (fRelTimeCam.Read()<=0)
2058	{
2059	*fLog << err << "Unable to read MCalibrationRelTimeCam from " << fname << endl;
2060	return kFALSE;
2061	}
2062
2063	if (file.FindKey("MBadPixelsCam"))
2064	{
2065	MBadPixelsCam bad;
2066	if (bad.Read()<=0)
2067	{
2068	*fLog << err << "Unable to read MBadPixelsCam from " << fname << endl;
2069	return kFALSE;
2070	}
2071	fBadPixels.Merge(bad);
2072	}
2073
2074	if (fDisplay /&& !fDisplay->GetCanvas("Pedestals")/) // FIXME!
2075	fDisplay->Read();
2076
2077	return kTRUE;
2078	}
2079
2080
2081	// --------------------------------------------------------------------------
2082	//
2083	// Set the useage of the Blind Pixel device
2084	//
2085	void MJCalibration::SetUseBlindPixel(const Bool_t b)
2086	{
2087	b ? SETBIT(fDevices,kUseBlindPixel) : CLRBIT(fDevices,kUseBlindPixel);
2088	}
2089
2090	// --------------------------------------------------------------------------
2091	//
2092	// Set the useage of the PIN Diode device
2093	//
2094	void MJCalibration::SetUsePINDiode(const Bool_t b)
2095	{
2096	b ? SETBIT(fDevices,kUsePINDiode) : CLRBIT(fDevices,kUsePINDiode);
2097	}
2098
2099	/*
2100	Bool_t MJCalibration::WriteEventloop(MEvtLoop &evtloop) const
2101	{
2102	if (IsNoStorage())
2103	return kTRUE;
2104
2105	if (fPathOut.IsNull())
2106	return kTRUE;
2107
2108	const TString oname(GetOutputFile());
2109
2110	*fLog << inf << "Writing to file: " << oname << endl;
2111
2112	TFile file(oname, fOverwrite?"RECREATE":"NEW", "File created by MJCalibration", 9);
2113	if (!file.IsOpen())
2114	{
2115	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
2116	return kFALSE;
2117	}
2118
2119	if (evtloop.Write(fName)<=0)
2120	{
2121	*fLog << err << "Unable to write MEvtloop to " << oname << endl;
2122	return kFALSE;
2123	}
2124
2125	return kTRUE;
2126	}
2127	*/
2128
2129	Bool_t MJCalibration::WriteTasks(MTask t1, MTask t2) const
2130	{
2131	if (IsNoStorage())
2132	return kTRUE;
2133
2134	TObjArray cont;
2135	if (t1)
2136	cont.Add(t1);
2137	if (t2)
2138	cont.Add(t2);
2139
2140	return WriteContainer(cont, GetOutputFileName(), fOverwrite?"RECREATE":"NEW");
2141	}
2142
2143	// --------------------------------------------------------------------------
2144	//
2145	// Write the result into the output file GetOutputFile(), if fOutputPath exists.
2146	//
2147	// The following containers are written:
2148	// - MStatusDisplay
2149	// - MCalibrationChargeCam or MCalibrationIntensityChargeCam
2150	// - MCalibrationBlindCam or MCalibrationIntensityBlindCam
2151	// - MCalibrationQECam or MCalibrationIntensityQECam
2152	// - MCalibrationChargePINDiode
2153	// - MBadPixelsCam
2154	// If the flag kRelTimes is set, then also:
2155	// - MCalibrationRelTimeCam or MCalibrationIntensityRelTimeCam
2156	//
2157	Bool_t MJCalibration::WriteResult(MParList &plist)
2158	{
2159	TObjArray cont;
2160
2161	if (!IsNoStorage())
2162	{
2163	if (IsIntensity())
2164	{
2165	cont.Add(&fIntensBadCam);
2166	cont.Add(&fIntensCalibCam);
2167	cont.Add(&fIntensQECam);
2168	cont.Add(&fIntensBlindCam);
2169	}
2170	else
2171	{
2172	cont.Add(&fBadPixels);
2173	cont.Add(&fCalibrationCam);
2174	cont.Add(&fQECam);
2175	cont.Add(&fCalibrationBlindCam);
2176	}
2177	cont.Add(&fCalibrationPINDiode);
2178
2179	//if (IsRelTimes())
2180	cont.Add(IsIntensity() ? (TObject)&fIntensRelTimeCam : (TObject)&fRelTimeCam);
2181
2182	if (fExtractorCam.GetSize() != 0)
2183	cont.Add(&fExtractorCam);
2184
2185	TObject *pedcam = plist.FindObject("MPedestalCam");
2186	if (!pedcam)
2187	*fLog << warn << " - WARNING - MPedestalCam (fundamental)... not found for writing!" << endl;
2188	else
2189	cont.Add(pedcam);
2190
2191	TObject *geom = plist.FindObject("MGeomCam");
2192	if (!geom)
2193	*fLog << warn << " - WARNING - MGeomCam... not found for writing!" << endl;
2194	else
2195	cont.Add(geom);
2196	}
2197
2198	if (IsHistsStorage())
2199	{
2200	cont.Add(plist.FindObject("MHCalibrationChargeCam"));
2201	cont.Add(plist.FindObject("MHCalibrationChargeBlindCam"));
2202	cont.Add(plist.FindObject("MHCalibrationChargePINDiode"));
2203	if (IsRelTimes())
2204	cont.Add(plist.FindObject("MHCalibrationRelTimeCam"));
2205	}
2206
2207	return WriteContainer(cont, GetOutputFileName(), "UPDATE");
2208	}
2209
2210	void MJCalibration::DisplayDoubleProject(MHCamera cam, const char whatsmall, const char* whatbig) const
2211	{
2212
2213	TArrayI inner(1);
2214	inner[0] = 0;
2215
2216	TArrayI outer(1);
2217	outer[0] = 1;
2218
2219	TArrayI s1(3);
2220	s1[0] = 6;
2221	s1[1] = 1;
2222	s1[2] = 2;
2223
2224	TArrayI s2(3);
2225	s2[0] = 3;
2226	s2[1] = 4;
2227	s2[2] = 5;
2228
2229	TVirtualPad *pad = gPad;
2230	pad->Divide(2,1);
2231
2232	TH1D *inout[2];
2233
2234	for (int i=0; i<2; i++)
2235	{
2236	pad->cd(i+1);
2237	gPad->SetBorderMode(0);
2238	gPad->SetTicks();
2239
2240	inout[i] = cam->ProjectionS(TArrayI(), TArrayI(1,&i), i==0 ? "Inner" : "Outer");
2241	FixDataCheckHist(inout[i]);
2242	inout[i]->SetTitle(Form("%s %s",cam->GetTitle(),i==0 ? "Inner" : "Outer"));
2243	inout[i]->SetDirectory(NULL);
2244	inout[i]->SetLineColor(kRed+i);
2245	inout[i]->SetBit(kCanDelete);
2246	inout[i]->Draw();
2247	//
2248	// Display the outliers as dead and noisy pixels
2249	//
2250	if (!inout[i]->Fit("gaus","0Q"))
2251	DisplayOutliers(inout[i],whatsmall,whatbig);
2252
2253	gPad->Modified();
2254	gPad->Update();
2255	TPaveStats st = (TPaveStats)inout[i]->GetListOfFunctions()->FindObject("stats");
2256	st->SetY1NDC(0.6);
2257	st->SetY2NDC(0.9);
2258	st->SetX1NDC(0.55);
2259	st->SetX2NDC(0.99);
2260	gPad->Modified();
2261	gPad->Update();
2262
2263	TLegend *leg2 = new TLegend(0.55,0.4,0.99,0.6);
2264
2265	//
2266	// Display the two half of the camera separately
2267	//
2268	TH1D *half[2];
2269	half[0] = cam->ProjectionS(s1, TArrayI(1,&i), "Sector 6-1-2");
2270	half[1] = cam->ProjectionS(s2, TArrayI(1,&i), "Sector 3-4-5");
2271
2272	for (int j=0; j<2; j++)
2273	{
2274	half[j]->SetLineColor(kRed+i+2*j+1);
2275	half[j]->SetDirectory(NULL);
2276	half[j]->SetBit(kCanDelete);
2277	half[j]->Draw("same");
2278	leg2->AddEntry(half[j], half[j]->GetName(), "l");
2279	}
2280	leg2->Draw();
2281	}
2282	}

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