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Last change on this file since 7028 was 7028, checked in by tbretz, 20 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	! Author(s): Markus Gaug, 02/2004 <mailto:markus@ifae.es>
20	!
21	! Copyright: MAGIC Software Development, 2000-2005
22	!
23	!
24	\* ======================================================================== */
25
26	/////////////////////////////////////////////////////////////////////////////
27	//
28	// MJCalibration
29	//
30	// Do one calibration loop over serious of runs with the same pulser
31	// colour and the same intensity. The following containers (rectangular) and
32	// tasks (ellipses) are called to produce an MCalibrationChargeCam and to
33	// update the MCalibrationQECam: (MCalibrate is not called from this class)
34	//
35	//Begin_Html
36	/*
37	<img src="images/CalibClasses.gif">
38	*/
39	//End_Html
40	//
41	// Different signal extractors can be set with the command SetExtractor()
42	// Only extractors deriving from MExtractor can be set, default is MExtractSlidingWindow
43	//
44	// Different arrival time extractors can be set with the command SetTimeExtractor()
45	// Only extractors deriving from MExtractTime can be set, default is MExtractTimeHighestIntegral
46	//
47	// At the end of the eventloop, plots and results are displayed, depending on
48	// the flags set (see DisplayResult())
49	//
50	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
51	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
52	// Otherwise, (default: SetNormalDisplay()), a good selection of plots is given
53	//
54	// The absolute light calibration devices Blind Pixel and PIN Diode can be switched on
55	// and off with the commands:
56	//
57	// - SetUseBlindPixel(Bool_t )
58	// - SetUsePINDiode(Bool_t )
59	//
60	// See also: MHCalibrationChargePix, MHCalibrationChargeCam, MHGausEvents
61	// MHCalibrationChargeBlindPix, MHCalibrationChargePINDiode
62	// MCalibrationChargePix, MCalibrationChargeCam, MCalibrationChargeCalc
63	// MCalibrationBlindPix, MCalibrationChargePINDiode,
64	// MCalibrationQECam, MBadPixelsPix, MBadPixelsCam
65	//
66	// If the flag RelTimeCalibration() is set, a calibration of the relative arrival
67	// times is also performed. The following containers (rectangular) and
68	// tasks (ellipses) are called to produce an MCalibrationRelTimeCam used by
69	// MCalibrateTime to correct timing offset between pixels: (MCalibrateTime is not
70	// called from this class)
71	//
72	//Begin_Html
73	/*
74	<img src="images/RelTimeClasses.gif">
75	*/
76	//End_Html
77	//
78	// Different arrival time extractors can be set directly with the command
79	// SetTimeExtractor(MExtractor *)
80	//
81	// Resource file entries are case sensitive!
82	//
83	// See also: MHCalibrationRelTimePix, MHCalibrationRelTimeCam, MHGausEvents
84	// MCalibrationRelTimePix, MCalibrationRelTimeCam
85	// MBadPixelsPix, MBadPixelsCam
86	//
87	/////////////////////////////////////////////////////////////////////////////
88	#include "MJCalibration.h"
89
90	#include <TFile.h>
91	#include <TF1.h>
92	#include <TStyle.h>
93	#include <TCanvas.h>
94	#include <TSystem.h>
95	#include <TLine.h>
96	#include <TLatex.h>
97	#include <TLegend.h>
98	#include <TRegexp.h>
99	#include <TPaveText.h>
100	#include <TPaveStats.h>
101	#include <TEnv.h>
102
103	#include "MLog.h"
104	#include "MLogManip.h"
105
106	#include "MRunIter.h"
107	#include "MSequence.h"
108	#include "MParList.h"
109	#include "MTaskList.h"
110	#include "MEvtLoop.h"
111
112	#include "MHCamera.h"
113	#include "MGeomCam.h"
114
115	#include "MPedestalCam.h"
116	#include "MCalibColorSteer.h"
117
118	#include "MCalibrationIntensityChargeCam.h"
119	#include "MCalibrationIntensityBlindCam.h"
120	#include "MCalibrationIntensityRelTimeCam.h"
121	#include "MCalibrationIntensityQECam.h"
122
123	#include "MCalibrationPatternDecode.h"
124	#include "MCalibrationCam.h"
125	#include "MCalibrationHiLoCam.h"
126	#include "MCalibrationHiLoPix.h"
127	#include "MCalibrationQECam.h"
128	#include "MCalibrationQEPix.h"
129	#include "MCalibrationChargeCam.h"
130	#include "MCalibrationChargePix.h"
131	#include "MCalibrationChargePINDiode.h"
132	#include "MCalibrationBlindPix.h"
133	#include "MCalibrationBlindCam.h"
134	#include "MCalibrationBlindCamOneOldStyle.h"
135	#include "MCalibrationBlindCamTwoNewStyle.h"
136	#include "MCalibrationBlindCamThreeNewStyle.h"
137	#include "MCalibrationChargeCalc.h"
138	#include "MCalibColorSet.h"
139	#include "MCalibrationRelTimeCam.h"
140	#include "MCalibrationRelTimeCalc.h"
141
142	#include "MHGausEvents.h"
143	#include "MHCalibrationCam.h"
144	#include "MHCalibrationChargeCam.h"
145	#include "MHCalibrationChargeBlindCam.h"
146	#include "MHCalibrationChargePINDiode.h"
147	#include "MHCalibrationRelTimeCam.h"
148	#include "MHCalibrationPix.h"
149
150	#include "MReadMarsFile.h"
151	#include "MPedCalcPedRun.h"
152	#include "MRawFileRead.h"
153	#include "MGeomApply.h"
154	#include "MTaskEnv.h"
155	#include "MBadPixelsMerge.h"
156	#include "MBadPixelsCam.h"
157	#include "MExtractTime.h"
158	#include "MExtractor.h"
159	#include "MExtractPINDiode.h"
160	#include "MExtractBlindPixel.h"
161	#include "MExtractSlidingWindow.h"
162	#include "MExtractTimeHighestIntegral.h"
163	#include "MFCosmics.h"
164	#include "MFTriggerPattern.h"
165	#include "MContinue.h"
166	#include "MFillH.h"
167
168	#include "MTriggerPatternDecode.h"
169
170	#include "MArrivalTimeCam.h"
171
172	#include "MStatusDisplay.h"
173
174	ClassImp(MJCalibration);
175
176	using namespace std;
177
178	const Int_t MJCalibration::gkIFAEBoxInaugurationRun = 20113;
179	const Int_t MJCalibration::gkSecondBlindPixelInstallation = 31693;
180	const Int_t MJCalibration::gkSpecialPixelsContInstallation = 34057;
181	const Int_t MJCalibration::gkThirdBlindPixelInstallation = 43308;
182	const TString MJCalibration::fgReferenceFile = "mjobs/calibrationref.rc";
183	const TString MJCalibration::fgHiLoCalibFile = "mjobs/hilocalib_df46.root";
184
185	// --------------------------------------------------------------------------
186	//
187	// Default constructor.
188	//
189	// - fExtractor to NULL, fTimeExtractor to NULL, fColor to kNONE,
190	// fDisplay to kNormalDisplay, kRelTimes to kFALSE, kataCheck to kFALSE, kDebug to kFALSE,
191	// kIntensity to kFALSE
192	// - SetUseBlindPixel()
193	// - SetUsePINDiode()
194	//
195	MJCalibration::MJCalibration(const char name, const char title)
196	: fExtractor(NULL), fTimeExtractor(NULL),
197	fColor(MCalibrationCam::kNONE), fDisplayType(kDataCheckDisplay),
198	fGeometry("MGeomCamMagic")
199	{
200
201	fName = name ? name : "MJCalibration";
202	fTitle = title ? title : "Tool to create the calibration constants for one calibration run";
203
204	SetHiLoCalibration();
205	SetRelTimeCalibration();
206	SetDebug(kFALSE);
207	SetIntensity(kFALSE);
208
209	SetReferenceFile();
210	SetHiLoCalibFile();
211
212	fConvFADC2PheMin = 0.;
213	fConvFADC2PheMax = 1.5;
214	fConvFADC2PhotMin = 0.;
215	fConvFADC2PhotMax = 10.;
216	fQEMin = 0.;
217	fQEMax = 0.3;
218	fArrivalTimeMin = 1.;
219	fArrivalTimeMax = 10.;
220	fTimeOffsetMin = -3.;
221	fTimeOffsetMax = 3.;
222	fTimeResolutionMin = 0.;
223	fTimeResolutionMax = 1.;
224
225	fRefFADC2PheInner = 0.14;
226	fRefFADC2PheOuter = 0.4;
227	fRefConvFADC2PheInner = 0.14;
228	fRefConvFADC2PheOuter = 0.52;
229	fRefQEInner = 0.18;
230	fRefQEOuter = 0.12;
231	fRefArrivalTimeInner = 4.5;
232	fRefArrivalTimeOuter = 5.0;
233	fRefArrivalTimeRmsInner = 0.5;
234	fRefArrivalTimeRmsOuter = 0.5;
235	fRefTimeOffsetInner = -0.23;
236	fRefTimeOffsetOuter = 0.39;
237	fRefTimeResolutionInner = 0.153;
238	fRefTimeResolutionOuter = 0.128;
239
240	}
241
242	void MJCalibration::DrawTab(MParList &plist, const char cont, const char name, Option_t *opt)
243	{
244	TObject *obj = plist.FindObject(cont);
245	if (!obj)
246	return;
247
248	fDisplay->AddTab(name);
249	obj->DrawClone(opt);
250	}
251
252	// --------------------------------------------------------------------------
253	//
254	// Display the results in MStatusDisplay:
255	//
256	// - Add "Calibration" to the MStatusDisplay title
257	// - Retrieve the MGeomCam from MParList
258	// - Initialize the following MHCamera's:
259	// 1) MCalibrationPix::GetMean()
260	// 2) MCalibrationPix::Sigma()
261	// 3) MCalibrationChargePix::GetRSigma()
262	// 4) MCalibrationChargePix::GetRSigmaPerCharge()
263	// 5) MCalibrationChargePix::GetPheFFactorMethod()
264	// 6) MCalibrationChargePix::GetMeanConvFADC2Phe()
265	// 7) MCalibrationChargePix::GetMeanFFactorFADC2Phot()
266	// 8) MCalibrationQEPix::GetQECascadesFFactor()
267	// 9) MCalibrationQEPix::GetQECascadesBlindPixel()
268	// 10) MCalibrationQEPix::GetQECascadesPINDiode()
269	// 11) MCalibrationQEPix::GetQECascadesCombined()
270	// 12) MCalibrationQEPix::IsAverageQEFFactorAvailable()
271	// 13) MCalibrationQEPix::IsAverageQEBlindPixelAvailable()
272	// 14) MCalibrationQEPix::IsAverageQEPINDiodeAvailable()
273	// 15) MCalibrationQEPix::IsAverageQECombinedAvailable()
274	// 16) MCalibrationChargePix::IsHiGainSaturation()
275	// 17) MCalibrationPix::GetHiLoMeansDivided()
276	// 18) MCalibrationPix::GetHiLoSigmasDivided()
277	// 19) MCalibrationChargePix::GetHiGainPickup()
278	// 20) MCalibrationChargePix::GetLoGainPickup()
279	// 21) MCalibrationChargePix::GetHiGainBlackout()
280	// 22) MCalibrationChargePix::GetLoGainBlackout()
281	// 23) MCalibrationPix::IsExcluded()
282	// 24) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnsuitableRun)
283	// 25) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnreliableRun)
284	// 26) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kHiGainOscillating)
285	// 27) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kLoGainOscillating)
286	// 28) MCalibrationChargePix::GetAbsTimeMean()
287	// 29) MCalibrationChargePix::GetAbsTimeRms()
288	//
289	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
290	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
291	// and otherwise, (default: SetNormalDisplay()), a good selection of plots is given
292	//
293	void MJCalibration::DisplayResult(MParList &plist)
294	{
295	if (!fDisplay)
296	return;
297
298	TString drawoption = "nonew ";
299	if (fDisplayType == kDataCheckDisplay)
300	drawoption += "datacheck";
301	if (fDisplayType == kFullDisplay)
302	drawoption += "all";
303
304	if (IsUsePINDiode())
305	DrawTab(plist, "MHCalibrationChargePINDiode", "PINDiode", drawoption);
306	if (IsUseBlindPixel())
307	DrawTab(plist, "MHCalibrationChargeBlindCam", "BlindPix", drawoption);
308	if (IsRelTimes())
309	DrawTab(plist, "MHCalibrationRelTimeCam", "Time", drawoption);
310	DrawTab(plist, "MHCalibrationChargeCam", "Charge", drawoption);
311
312	//
313	// Update display
314	//
315	TString title = fDisplay->GetTitle();
316	title += "-- Calibration ";
317	title += Form("calib%08d", fSequence.GetSequence());
318	title += " --";
319	fDisplay->SetTitle(title);
320
321	//
322	// Get container from list
323	//
324	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
325
326	// Create histograms to display
327	MHCamera disp1 (geomcam, "Charge", "Fitted Mean Signal (Charges)");
328	MHCamera disp2 (geomcam, "SigmaCharge", "Sigma of Fitted Signal");
329	MHCamera disp3 (geomcam, "RSigma", "Reduced Sigmas");
330	MHCamera disp4 (geomcam, "RSigmaPerCharge", "Reduced Sigma per Charge");
331	MHCamera disp5 (geomcam, "NumPhes", "Number Photo-electrons");
332	MHCamera disp6 (geomcam, "ConvFADC2Phes", "Phes per Charge (Before Flat-Field)");
333	MHCamera disp7 (geomcam, "TotalFFactor", "Total F-Factor(F-Factor Method)");
334	MHCamera disp8 (geomcam, "CascadesQEFFactor", "Cascades QE (F-Factor Method)");
335	MHCamera disp9 (geomcam, "CascadesQEBlindPix","Cascades QE (Blind Pixel Method)");
336	MHCamera disp10(geomcam, "CascadesQEPINDiode","Cascades QE (PIN Diode Method)");
337	MHCamera disp11(geomcam, "CascadesQECombined","Cascades QE (Combined Method)");
338	MHCamera disp12(geomcam, "FFactorValid", "Pixels with Valid F-Factor Calibration");
339	MHCamera disp13(geomcam, "BlindPixelValid", "Pixels with valid BlindPixel Calibration");
340	MHCamera disp14(geomcam, "PINdiodeValid", "Pixels with Valid PINDiode Calibration");
341	MHCamera disp15(geomcam, "CombinedValid", "Pixels with Valid Combined Calibration");
342	MHCamera disp16(geomcam, "Saturation", "Pixels with Saturated Hi Gain");
343	MHCamera disp17(geomcam, "ConversionMeans", "Conversion HiGain.vs.LoGain Means");
344	MHCamera disp18(geomcam, "ConversionSigmas", "Conversion HiGain.vs.LoGain Sigmas");
345	MHCamera disp19(geomcam, "HiGainPickup", "Number Pickup Events Hi Gain");
346	MHCamera disp20(geomcam, "LoGainPickup", "Number Pickup Events Lo Gain");
347	MHCamera disp21(geomcam, "HiGainBlackout", "Number Blackout Events Hi Gain");
348	MHCamera disp22(geomcam, "LoGainBlackout", "Number Blackout Events Lo Gain");
349	MHCamera disp23(geomcam, "Excluded", "Pixels Previously Excluded");
350	MHCamera disp24(geomcam, "UnSuitable", "Pixels NOT Suited for Further Analysis");
351	MHCamera disp25(geomcam, "UnReliable", "Pixels Suitable, but NOT Reliable for Further Analysis");
352	MHCamera disp26(geomcam, "HiGainOscillating", "Oscillating Pixels High Gain");
353	MHCamera disp27(geomcam, "LoGainOscillating", "Oscillating Pixels Low Gain");
354	MHCamera disp28(geomcam, "AbsTimeMean", "Abs. Arrival Times");
355	MHCamera disp29(geomcam, "AbsTimeRms", "RMS of Arrival Times");
356	MHCamera disp30(geomcam, "MeanTime", "Mean Rel. Arrival Times");
357	MHCamera disp31(geomcam, "SigmaTime", "Sigma Rel. Arrival Times");
358	MHCamera disp32(geomcam, "TimeProb", "Probability of Time Fit");
359	MHCamera disp33(geomcam, "TimeNotFitValid", "Pixels with not valid Fit Results");
360	MHCamera disp34(geomcam, "TimeOscillating", "Oscillating Pixels");
361	MHCamera disp35(geomcam, "TotalConv", "Conversion Factor to Photons");
362	MHCamera disp36(geomcam, "RMSperMean", "Charge histogram RMS per Mean");
363	MHCamera disp37(geomcam, "TotalConvPhe", "Conversion Factor to equiv. Phe's");
364
365	MCalibrationChargeCam *cam = NULL;
366	MCalibrationQECam *qecam = NULL;
367	MCalibrationRelTimeCam *relcam = NULL;
368	MBadPixelsCam *badcam = NULL;
369
370	if (IsIntensity())
371	{
372	cam = (MCalibrationChargeCam*) fIntensCalibCam.GetCam();
373	qecam = (MCalibrationQECam*) fIntensQECam.GetCam();
374	relcam = (MCalibrationRelTimeCam*)fIntensRelTimeCam.GetCam();
375	badcam = (MBadPixelsCam*) fIntensBadCam.GetCam();
376	}
377	else
378	{
379	cam = &fCalibrationCam;
380	qecam = &fQECam;
381	relcam = &fRelTimeCam;
382	badcam = &fBadPixels;
383	}
384
385	// Fitted charge means and sigmas
386	disp1.SetCamContent(*cam, 0);
387	disp1.SetCamError( *cam, 1);
388	disp2.SetCamContent(*cam, 2);
389	disp2.SetCamError( *cam, 3);
390
391	// Reduced Sigmas and reduced sigmas per charge
392	disp3.SetCamContent(*cam, 5);
393	disp3.SetCamError( *cam, 6);
394	disp4.SetCamContent(*cam, 7);
395	disp4.SetCamError( *cam, 8);
396
397	// F-Factor Method
398	disp5.SetCamContent(*cam, 9);
399	disp5.SetCamError( *cam, 10);
400	disp6.SetCamContent(*cam, 11);
401	disp6.SetCamError( *cam, 12);
402	disp7.SetCamContent(*cam, 13);
403	disp7.SetCamError( *cam, 14);
404
405	// Quantum Efficiencies
406	disp8.SetCamContent (*qecam, 0 );
407	disp8.SetCamError (*qecam, 1 );
408	disp9.SetCamContent (*qecam, 2 );
409	disp9.SetCamError (*qecam, 3 );
410	disp10.SetCamContent(*qecam, 4 );
411	disp10.SetCamError (*qecam, 5 );
412	disp11.SetCamContent(*qecam, 6 );
413	disp11.SetCamError (*qecam, 7 );
414
415	// Valid flags
416	disp12.SetCamContent(*qecam, 8 );
417	disp13.SetCamContent(*qecam, 9 );
418	disp14.SetCamContent(*qecam, 10);
419	disp15.SetCamContent(*qecam, 11);
420
421	// Conversion Hi-Lo
422	disp16.SetCamContent(*cam, 25);
423	disp17.SetCamContent(*cam, 16);
424	disp17.SetCamError (*cam, 17);
425	disp18.SetCamContent(*cam, 18);
426	disp18.SetCamError (*cam, 19);
427
428	// Pickup and Blackout
429	disp19.SetCamContent(*cam, 21);
430	disp20.SetCamContent(*cam, 22);
431	disp21.SetCamContent(*cam, 23);
432	disp22.SetCamContent(*cam, 24);
433
434	// Pixels with defects
435	disp23.SetCamContent(*cam, 20);
436	disp24.SetCamContent(*badcam, 6);
437	disp25.SetCamContent(*badcam, 7);
438
439	// Oscillations
440	disp26.SetCamContent(*badcam, 10);
441	disp27.SetCamContent(*badcam, 11);
442
443	// Arrival Times
444	disp28.SetCamContent(*cam, 26);
445	disp28.SetCamError( *cam, 27);
446	disp29.SetCamContent(*cam, 27);
447
448	// RMS and Mean
449	disp36.SetCamContent(*cam,32);
450	disp36.SetCamError(*cam,33);
451
452	disp1.SetYTitle("Q [FADC cnts]");
453	disp2.SetYTitle("\\sigma_{Q} [FADC cnts]");
454
455	disp3.SetYTitle("\\sqrt{\\sigma^{2}_{Q} - RMS^{2}_{Ped}} [FADC cnts]");
456	disp4.SetYTitle("Red.Sigma/<Q> [1]");
457
458	disp5.SetYTitle("Photo-electons [1]");
459	disp6.SetYTitle("Phes/<Q> [FADC cnts^{-1}]");
460	disp7.SetYTitle("Total F-Factor [1]");
461
462	disp8.SetYTitle("QE [1]");
463	disp9.SetYTitle("QE [1]");
464	disp10.SetYTitle("QE [1]");
465	disp11.SetYTitle("QE [1]");
466
467	disp12.SetYTitle("[1]");
468	disp13.SetYTitle("[1]");
469	disp14.SetYTitle("[1]");
470	disp15.SetYTitle("[1]");
471	disp16.SetYTitle("[1]");
472
473	disp17.SetYTitle("<Q>(High)/<Q>(Low) [1]");
474	disp18.SetYTitle("\\sigma_{Q}(High)/\\sigma_{Q}(Low) [1]");
475
476	disp19.SetYTitle("[1]");
477	disp20.SetYTitle("[1]");
478	disp21.SetYTitle("[1]");
479	disp22.SetYTitle("[1]");
480	// disp23.SetYTitle("[1]");
481	// disp24.SetYTitle("[1]");
482	// disp25.SetYTitle("[1]");
483	disp26.SetYTitle("[1]");
484	disp27.SetYTitle("[1]");
485
486	disp28.SetYTitle("Mean Abs. Time [FADC sl.]");
487	disp29.SetYTitle("RMS Abs. Time [FADC sl.]");
488	disp35.SetYTitle("Conv.Factor [Ph/FADC cnts]");
489	disp36.SetYTitle("Charge RMS/<Q> [1]");
490	disp37.SetYTitle("Conv.Factor [Phe/FADC cnts]");
491
492	for (UInt_t i=0;i<geomcam.GetNumPixels();i++)
493	{
494
495	MCalibrationChargePix &pix = (MCalibrationChargePix&)(*cam) [i];
496	MCalibrationQEPix &qe = (MCalibrationQEPix&) (*qecam)[i];
497
498	if (!pix.IsFFactorMethodValid())
499	continue;
500
501	const Float_t convphe = pix.GetMeanConvFADC2Phe();
502	const Float_t quaeff = qe.GetQECascadesFFactor(0.);
503
504	disp35.Fill(i,convphe/quaeff);
505	disp35.SetUsed(i);
506
507	disp37.Fill(i,convphe/quaeff*MCalibrationQEPix::gkDefaultAverageQE);
508	disp37.SetUsed(i);
509	}
510
511
512	if (IsRelTimes())
513	{
514	disp30.SetCamContent(*relcam,0);
515	disp30.SetCamError( *relcam,1);
516	disp31.SetCamContent(*relcam,2);
517	disp31.SetCamError( *relcam,3);
518	disp32.SetCamContent(*relcam,4);
519	disp33.SetCamContent(fBadPixels,20);
520	disp34.SetCamContent(fBadPixels,21);
521
522	disp30.SetYTitle("Time Offset [FADC units]");
523	disp31.SetYTitle("Timing resolution [FADC units]");
524	disp32.SetYTitle("P_{Time} [1]");
525	disp33.SetYTitle("[1]");
526	disp34.SetYTitle("[1]");
527	}
528
529	if (fDisplayType == kDataCheckDisplay)
530	{
531
532	TCanvas &c1 = fDisplay->AddTab("FitCharge");
533	c1.Divide(3, 3);
534
535	//
536	// MEAN CHARGES
537	//
538
539	c1.cd(1);
540	gPad->SetBorderMode(0);
541	gPad->SetTicks();
542	MHCamera obj1=(MHCamera)disp1.DrawCopy("hist");
543	//
544	// for the datacheck, fix the ranges!!
545	//
546	// obj1->SetMinimum(fChargeMin);
547	// obj1->SetMaximum(fChargeMax);
548	//
549	// Set the datacheck sizes:
550	//
551	FixDataCheckHist((TH1D*)obj1);
552	obj1->SetStats(kFALSE);
553	//
554	// set reference lines
555	//
556	// DisplayReferenceLines(obj1,0);
557
558	c1.cd(4);
559	gPad->SetBorderMode(0);
560	obj1->SetPrettyPalette();
561	obj1->Draw();
562
563	c1.cd(7);
564	gPad->SetBorderMode(0);
565	gPad->SetTicks();
566	TH1D obj2 = (TH1D)obj1->Projection(obj1->GetName());
567	obj2->Draw();
568	obj2->SetBit(kCanDelete);
569	obj2->Fit("gaus","Q");
570	TF1 *fun2 = obj2->GetFunction("gaus");
571	fun2->SetLineColor(kYellow);
572	gPad->Modified();
573	gPad->Update();
574	TPaveStats st = (TPaveStats)obj2->GetListOfFunctions()->FindObject("stats");
575	st->SetY1NDC(0.55);
576	st->SetY2NDC(0.89);
577	st->SetX1NDC(0.65);
578	st->SetX2NDC(0.99);
579	gPad->Modified();
580	gPad->Update();
581	//
582	// Set the datacheck sizes:
583	//
584	FixDataCheckHist(obj2);
585	obj2->SetStats(1);
586
587	//
588	// Display the outliers as dead and noisy pixels
589	//
590	DisplayOutliers(obj2,"low-ampl.","high-ampl.");
591	TLatex flattex;
592	flattex.SetTextSize(0.07);
593	const Double_t minl = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
594	const Double_t maxl = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
595	flattex.DrawLatex(minl+0.015*(maxl-minl),obj2->GetBinContent(obj2->GetMaximumBin())/1.35,
596	Form("Flatfield precision: %4.2f%%",
597	fun2->GetParameter(2)/fun2->GetParameter(1)*100.));
598
599	//
600	// RMS per Charge
601	//
602
603	c1.cd(2);
604	gPad->SetBorderMode(0);
605	gPad->SetTicks();
606	MHCamera obj3=(MHCamera)disp36.DrawCopy("hist");
607	//
608	// for the datacheck, fix the ranges!!
609	//
610	// obj3->SetMinimum(0.);
611	// obj3->SetMaximum(fChargeMax);
612	//
613	// Set the datacheck sizes:
614	//
615	FixDataCheckHist((TH1D*)obj3);
616	obj3->SetStats(kFALSE);
617	//
618	// set reference lines
619	//
620	// DisplayReferenceLines(obj3,0);
621
622	c1.cd(5);
623	gPad->SetBorderMode(0);
624	obj3->SetPrettyPalette();
625	obj3->Draw();
626
627	c1.cd(8);
628	gPad->SetBorderMode(0);
629	if (geomcam.InheritsFrom("MGeomCamMagic"))
630	DisplayDoubleProject(&disp36, "dead", "noisy");
631
632	//
633	// PHOTO ELECTRONS
634	//
635
636	c1.cd(3);
637	gPad->SetBorderMode(0);
638	gPad->SetTicks();
639	MHCamera obj4=(MHCamera)disp5.DrawCopy("hist");
640	//
641	// for the datacheck, fix the ranges!!
642	//
643	// obj3->SetMinimum(fChargeMin);
644	// obj3->SetMaximum(fChargeMax);
645	//
646	// Set the datacheck sizes:
647	//
648	FixDataCheckHist((TH1D*)obj4);
649	obj4->SetStats(kFALSE);
650	//
651	// set reference lines
652	//
653	// DisplayReferenceLines(obj3,0);
654
655	c1.cd(6);
656	gPad->SetBorderMode(0);
657	obj4->SetPrettyPalette();
658	obj4->Draw();
659
660	c1.cd(9);
661	gPad->SetBorderMode(0);
662	if (geomcam.InheritsFrom("MGeomCamMagic"))
663	DisplayDoubleProject(&disp5, "dead", "noisy");
664
665	//
666	// CONVERSION FACTORS
667	//
668	TCanvas &c2 = fDisplay->AddTab("Conversion");
669	c2.Divide(3,3);
670
671	c2.cd(1);
672	gPad->SetBorderMode(0);
673	gPad->SetTicks();
674	MHCamera obj5=(MHCamera)disp6.DrawCopy("hist");
675	//
676	// for the datacheck, fix the ranges!!
677	//
678	obj5->SetMinimum(fConvFADC2PheMin);
679	obj5->SetMaximum(fConvFADC2PheMax);
680	//
681	// Set the datacheck sizes:
682	//
683	FixDataCheckHist((TH1D*)obj5);
684	obj5->SetStats(kFALSE);
685	//
686	// set reference lines
687	//
688	DisplayReferenceLines(obj5,2);
689
690	c2.cd(4);
691	gPad->SetBorderMode(0);
692	obj5->SetPrettyPalette();
693	obj5->Draw();
694
695	c2.cd(7);
696	gPad->SetBorderMode(0);
697	if (geomcam.InheritsFrom("MGeomCamMagic"))
698	DisplayDoubleProject(&disp6, "noisy", "dead");
699
700	//
701	// QUANTUM EFFICIENCY
702	//
703	c2.cd(2);
704	gPad->SetBorderMode(0);
705	gPad->SetTicks();
706	MHCamera obj6=(MHCamera)disp8.DrawCopy("hist");
707	//
708	// for the datacheck, fix the ranges!!
709	//
710	obj6->SetMinimum(fQEMin);
711	obj6->SetMaximum(fQEMax);
712	//
713	// Set the datacheck sizes:
714	//
715	FixDataCheckHist((TH1D*)obj6);
716	obj6->SetStats(kFALSE);
717	//
718	// set reference lines
719	//
720	DisplayReferenceLines(obj6,0);
721
722	c2.cd(5);
723	gPad->SetBorderMode(0);
724	obj6->SetPrettyPalette();
725	obj6->Draw();
726
727	c2.cd(8);
728	gPad->SetBorderMode(0);
729	if (geomcam.InheritsFrom("MGeomCamMagic"))
730	DisplayDoubleProject(&disp8, "noisy", "dead");
731
732	//
733	// CONVERSION FADC TO PHOTONS
734	//
735
736	c2.cd(3);
737	gPad->SetBorderMode(0);
738	gPad->SetTicks();
739	MHCamera obj7=(MHCamera)disp37.DrawCopy("hist");
740	//
741	// for the datacheck, fix the ranges!!
742	//
743	obj7->SetMinimum(fConvFADC2PheMin);
744	obj7->SetMaximum(fConvFADC2PheMax);
745	//
746	// Set the datacheck sizes:
747	//
748	FixDataCheckHist((TH1D*)obj7);
749	obj7->SetStats(kFALSE);
750	//
751	// set reference lines
752	//
753	DisplayReferenceLines(obj7,1);
754
755	c2.cd(6);
756	gPad->SetBorderMode(0);
757	obj7->SetPrettyPalette();
758	obj7->Draw();
759	c2.cd(9);
760	gPad->SetBorderMode(0);
761	if (geomcam.InheritsFrom("MGeomCamMagic"))
762	DisplayDoubleProject(&disp35, "noisy", "dead");
763
764	//
765	// ARRIVAL TIMES
766	//
767	TCanvas &c3 = fDisplay->AddTab("AbsTimes");
768	c3.Divide(2,3);
769
770	c3.cd(1);
771	gPad->SetBorderMode(0);
772	gPad->SetTicks();
773	MHCamera obj10=(MHCamera)disp28.DrawCopy("hist");
774	//
775	// for the datacheck, fix the ranges!!
776	//
777	obj10->SetMinimum(fArrivalTimeMin);
778	obj10->SetMaximum(fArrivalTimeMax);
779	//
780	// Set the datacheck sizes:
781	//
782	FixDataCheckHist((TH1D*)obj10);
783	obj10->SetStats(kFALSE);
784	//
785	// set reference lines
786	//
787	DisplayReferenceLines(obj10,3);
788
789	c3.cd(3);
790	gPad->SetBorderMode(0);
791	obj10->SetPrettyPalette();
792	obj10->Draw();
793
794	c3.cd(5);
795	gPad->SetBorderMode(0);
796	if (geomcam.InheritsFrom("MGeomCamMagic"))
797	DisplayDoubleProject(&disp28, "early", "late");
798
799	//
800	// ARRIVAL TIMES JITTER
801	//
802	c3.cd(2);
803	gPad->SetBorderMode(0);
804	gPad->SetTicks();
805	MHCamera obj11=(MHCamera)disp29.DrawCopy("hist");
806	//
807	// for the datacheck, fix the ranges!!
808	//
809	// obj11->SetMinimum(fArrivalTimeMin);
810	// obj11->SetMaximum(fArrivalTimeMax);
811	//
812	// Set the datacheck sizes:
813	//
814	FixDataCheckHist((TH1D*)obj11);
815	obj11->SetStats(kFALSE);
816	//
817	// set reference lines
818	//
819	DisplayReferenceLines(obj11,4);
820
821	c3.cd(4);
822	gPad->SetBorderMode(0);
823	obj11->SetPrettyPalette();
824	obj11->Draw();
825
826	c3.cd(6);
827	gPad->SetBorderMode(0);
828	if (geomcam.InheritsFrom("MGeomCamMagic"))
829	DisplayDoubleProject(&disp29, "", "jittering");
830
831	//
832	// UNSUITABLE PIXELS
833	//
834	TCanvas &c4 = fDisplay->AddTab("Defect");
835	c4.Divide(2,2);
836
837	c4.cd(1);
838	gPad->SetBorderMode(0);
839	gPad->SetTicks();
840	MHCamera obj8=(MHCamera)disp24.DrawCopy("hist");
841	//
842	// for the datacheck, fix the ranges!!
843	//
844	const Double_t max = 12.;
845	obj8->SetMinimum(0.);
846	obj8->SetMaximum(max);
847	//
848	// Set the datacheck sizes:
849	//
850	FixDataCheckHist((TH1D*)obj8);
851	obj8->SetStats(kFALSE);
852
853	gStyle->SetPalette(1);
854	const Int_t numcol = gStyle->GetNumberOfColors()-3;
855
856	TPaveText *pave = new TPaveText(0.0,0.0,0.99,0.99);
857	pave->SetBit(kCanDelete);
858	pave->ConvertNDCtoPad();
859	pave->SetTextSize(0.045);
860	pave->AddText(" ");
861	TText *t1 = pave->AddText(Form("Signal smaller 4.5 Pedestal RMS: %3i pixels",
862	CountBadPixels(&disp24,1)));
863	t1->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol)));
864	t1->SetTextAlign(12);
865	TText *t2 = pave->AddText(Form("%s%3i%s","Signal Rel. error too large: ",
866	CountBadPixels(&disp24,2)," pixels"));
867	t2->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol)));
868	t2->SetTextAlign(12);
869	TText *t4 = pave->AddText(Form("Low Gain Saturation: %3i pixels",
870	CountBadPixels(&disp24,3)));
871	t4->SetTextColor(gStyle->GetColorPalette(Int_t(3./max*numcol)));
872	t4->SetTextAlign(12);
873	TText *t5 = pave->AddText(Form("Mean Arr. Time In First Extraction Bin: %3i pixels",
874	CountBadPixels(&disp24,4)));
875	t5->SetTextColor(gStyle->GetColorPalette(Int_t(4./max*numcol)));
876	t5->SetTextAlign(12);
877	TText *t6 = pave->AddText(Form("Mean Arr. Time In Last 2 Extraction Bins: %3i pixels",
878	CountBadPixels(&disp24,5)));
879	t6->SetTextColor(gStyle->GetColorPalette(Int_t(5./max*numcol)));
880	t6->SetTextAlign(12);
881	TText *t9 = pave->AddText(Form("Deviating Number of Photons: %3i pixels",
882	CountBadPixels(&disp24,6)));
883	t9->SetTextColor(gStyle->GetColorPalette(Int_t(6./max*numcol)));
884	t9->SetTextAlign(12);
885	TText *t10= pave->AddText(Form("High-Gain Histogram Overflow: %3i pixels",
886	CountBadPixels(&disp24,7 )));
887	t10->SetTextColor(gStyle->GetColorPalette(Int_t(7./max*numcol)));
888	t10->SetTextAlign(12);
889	TText *t11= pave->AddText(Form("Low-Gain Histogram Overflow: %3i pixels",
890	CountBadPixels(&disp24,8 )));
891	t11->SetTextColor(gStyle->GetColorPalette(Int_t(8./max*numcol)));
892	t11->SetTextAlign(12);
893	TText *t12= pave->AddText(Form("Presumably dead from Ped. Rms: %3i pixels",
894	CountBadPixels(&disp24,9 )));
895	t12->SetTextColor(gStyle->GetColorPalette(Int_t(9./max*numcol)));
896	t12->SetTextAlign(12);
897	TText *t13= pave->AddText(Form("Fluctuating Pulse Arrival Times: %3i pixels",
898	CountBadPixels(&disp24,10)));
899	t13->SetTextColor(gStyle->GetColorPalette(Int_t(10./max*numcol)));
900	t13->SetTextAlign(12);
901	TText *t17 = pave->AddText(Form("Deviating Number of Photo-electrons: %3i pixels",
902	CountBadPixels(&disp24,11)));
903	t17->SetTextColor(gStyle->GetColorPalette(Int_t(11./max*numcol)));
904	t17->SetTextAlign(12);
905	TText *t14= pave->AddText(Form("Previously Excluded: %3i pixels",
906	CountBadPixels(&disp24,12)));
907	t14->SetTextColor(gStyle->GetColorPalette(Int_t(12./max*numcol)));
908	t14->SetTextAlign(12);
909	pave->Draw();
910
911	c4.cd(3);
912	gPad->SetBorderMode(0);
913	obj8->Draw();
914	obj8->SetPrettyPalette();
915
916	//
917	// UNRELIABLE PIXELS
918	//
919
920	c4.cd(2);
921	gPad->SetBorderMode(0);
922	gPad->SetTicks();
923	MHCamera obj9=(MHCamera)disp25.DrawCopy("hist");
924	//
925	// for the datacheck, fix the ranges!!
926	//
927	const Double_t max2 = 9.;
928	obj9->SetMinimum(0.);
929	obj9->SetMaximum(max2);
930	//
931	// Set the datacheck sizes:
932	//
933	FixDataCheckHist((TH1D*)obj9);
934	obj9->SetStats(kFALSE);
935
936	gStyle->SetPalette(1);
937
938	TPaveText *pave2 = new TPaveText(0.0,0.0,0.99,0.99);
939	pave2->SetBit(kCanDelete);
940	pave2->ConvertNDCtoPad();
941	pave2->SetTextSize(0.05);
942	pave2->AddText(" ");
943	TText *t3 = pave2->AddText(Form("Signal Sigma smaller Pedestal RMS: %3i pixels",
944	CountBadPixels(&disp25,1)));
945	t3->SetTextColor(gStyle->GetColorPalette(Int_t(1./max2*numcol + 1.)));
946	t3->SetTextAlign(12);
947
948	TText *t7 = pave2->AddText(Form("Deviating Number of Photo-electrons: %3i pixels",
949	CountBadPixels(&disp25,2)));
950	t7->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol + 1.)));
951	t7->SetTextAlign(12);
952
953	TText *tt1 = pave2->AddText(Form("High Gain Signals could not be fitted: %3i pixels",
954	CountBadPixels(&disp25,3)));
955	tt1->SetTextColor(gStyle->GetColorPalette(Int_t(3./max2*numcol + 1.)));
956	tt1->SetTextAlign(12);
957	TText *tt2 = pave2->AddText(Form("Low Gain Signals could not be fitted: %3i pixels",
958	CountBadPixels(&disp25,4)));
959	tt2->SetTextColor(gStyle->GetColorPalette(Int_t(4./max2*numcol + 1.)));
960	tt2->SetTextAlign(12);
961	TText *tt3 = pave2->AddText(Form("Relative Arr. Times could not be fitted: %3i pixels",
962	CountBadPixels(&disp25,5)));
963	tt3->SetTextColor(gStyle->GetColorPalette(Int_t(5./max2*numcol + 1.)));
964	tt3->SetTextAlign(12);
965	TText *tt4 = pave2->AddText(Form("High Gain Signals Oscillation: %3i pixels",
966	CountBadPixels(&disp25,6)));
967	tt4->SetTextColor(gStyle->GetColorPalette(Int_t(6./max2*numcol + 1.)));
968	tt4->SetTextAlign(12);
969	TText *tt5 = pave2->AddText(Form("Low Gain Signals Oscillation: %3i pixels",
970	CountBadPixels(&disp25,7)));
971	tt5->SetTextColor(gStyle->GetColorPalette(Int_t(7./max2*numcol + 1.)));
972	tt5->SetTextAlign(12);
973	TText *tt6 = pave2->AddText(Form("Relative Arr. Times Oscillation: %3i pixels",
974	CountBadPixels(&disp25,8)));
975	tt6->SetTextColor(gStyle->GetColorPalette(Int_t(8./max2*numcol + 1.)));
976	tt6->SetTextAlign(12);
977	TText *tt8 = pave2->AddText(Form("Deviating global F-Factor: %3i pixels",
978	CountBadPixels(&disp25,9)));
979	tt8->SetTextColor(gStyle->GetColorPalette(Int_t(9./max2*numcol + 1.)));
980	tt8->SetTextAlign(12);
981	pave2->Draw();
982
983	c4.cd(4);
984	gPad->SetBorderMode(0);
985	obj9->SetPrettyPalette();
986	obj9->Draw();
987
988	if (IsRelTimes())
989	{
990	TCanvas &c5 = fDisplay->AddTab("RelTimes");
991	c5.Divide(2,3);
992
993	//
994	// MEAN REL. ARR. TIMES
995	//
996	c5.cd(1);
997	gPad->SetBorderMode(0);
998	gPad->SetTicks();
999	MHCamera obj10=(MHCamera)disp30.DrawCopy("hist");
1000	//
1001	// for the datacheck, fix the ranges!!
1002	//
1003	obj10->SetMinimum(fTimeOffsetMin);
1004	obj10->SetMaximum(fTimeOffsetMax);
1005	//
1006	// Set the datacheck sizes:
1007	//
1008	FixDataCheckHist((TH1D*)obj10);
1009	obj10->SetStats(kFALSE);
1010	//
1011	// set reference lines
1012	//
1013	DisplayReferenceLines(obj10,5);
1014
1015	c5.cd(3);
1016	gPad->SetBorderMode(0);
1017	obj10->SetPrettyPalette();
1018	obj10->Draw();
1019
1020	c5.cd(5);
1021	gPad->SetBorderMode(0);
1022	if (geomcam.InheritsFrom("MGeomCamMagic"))
1023	DisplayDoubleProject(&disp30, "early", "late");
1024
1025	//
1026	// JITTER Rel. Arr. Times
1027	//
1028	c5.cd(2);
1029	gPad->SetBorderMode(0);
1030	gPad->SetTicks();
1031	MHCamera obj11=(MHCamera)disp31.DrawCopy("hist");
1032	//
1033	// for the datacheck, fix the ranges!!
1034	//
1035	obj11->SetMinimum(fTimeResolutionMin);
1036	obj11->SetMaximum(fTimeResolutionMax);
1037	//
1038	// Set the datacheck sizes:
1039	//
1040	FixDataCheckHist((TH1D*)obj11);
1041	obj11->SetStats(kFALSE);
1042	//
1043	// set reference lines
1044	//
1045	DisplayReferenceLines(obj11,6);
1046
1047	c5.cd(4);
1048	gPad->SetBorderMode(0);
1049	obj11->SetPrettyPalette();
1050	obj11->Draw();
1051
1052	c5.cd(6);
1053	gPad->SetBorderMode(0);
1054	if (geomcam.InheritsFrom("MGeomCamMagic"))
1055	DisplayDoubleProject(&disp31, "too stable", "jittering");
1056
1057	}
1058	return;
1059	}
1060
1061	if (fDisplayType == kNormalDisplay)
1062	{
1063
1064	// Charges
1065	TCanvas &c11 = fDisplay->AddTab("FitCharge");
1066	c11.Divide(2, 4);
1067
1068	disp1.CamDraw(c11, 1, 2, 5, 1);
1069	disp2.CamDraw(c11, 2, 2, 5, 1);
1070
1071	// Reduced Sigmas
1072	TCanvas &c12 = fDisplay->AddTab("RedSigma");
1073	c12.Divide(2,4);
1074
1075	disp3.CamDraw(c12, 1, 2, 5, 1);
1076	disp4.CamDraw(c12, 2, 2, 5, 1);
1077
1078	// F-Factor
1079	TCanvas &c13 = fDisplay->AddTab("Phe's");
1080	c13.Divide(3,4);
1081
1082	disp5.CamDraw(c13, 1, 3, 5, 1);
1083	disp6.CamDraw(c13, 2, 3, 5, 1);
1084	disp7.CamDraw(c13, 3, 3, 5, 1);
1085
1086	// QE's
1087	TCanvas &c14 = fDisplay->AddTab("QE's");
1088	c14.Divide(4,4);
1089
1090	disp8.CamDraw(c14, 1, 4, 5, 1);
1091	disp9.CamDraw(c14, 2, 4, 5, 1);
1092	disp10.CamDraw(c14, 3, 4, 5, 1);
1093	disp11.CamDraw(c14, 4, 4, 5, 1);
1094
1095	// Defects
1096	TCanvas &c15 = fDisplay->AddTab("Defect");
1097	// c15.Divide(5,2);
1098	c15.Divide(4,2);
1099
1100	/*
1101	disp23.CamDraw(c15, 1, 5, 0);
1102	disp24.CamDraw(c15, 2, 5, 0);
1103	disp25.CamDraw(c15, 3, 5, 0);
1104	disp26.CamDraw(c15, 4, 5, 0);
1105	disp27.CamDraw(c15, 5, 5, 0);
1106	*/
1107	disp24.CamDraw(c15, 1, 4, 0);
1108	disp25.CamDraw(c15, 2, 4, 0);
1109	disp26.CamDraw(c15, 3, 4, 0);
1110	disp27.CamDraw(c15, 4, 4, 0);
1111
1112	// Abs. Times
1113	TCanvas &c16 = fDisplay->AddTab("AbsTimes");
1114	c16.Divide(2,3);
1115
1116	disp28.CamDraw(c16, 1, 2, 5);
1117	disp29.CamDraw(c16, 2, 2, 5);
1118
1119	if (IsRelTimes())
1120	{
1121	// Rel. Times
1122	TCanvas &c17 = fDisplay->AddTab("RelTimes");
1123	c17.Divide(2,4);
1124
1125	disp30.CamDraw(c17, 1, 2, 5, 1);
1126	disp31.CamDraw(c17, 2, 2, 5, 1);
1127	}
1128
1129	return;
1130	}
1131
1132	if (fDisplayType == kFullDisplay)
1133	{
1134	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationChargeCam");
1135
1136	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1137	{
1138	cam->GetAverageHiGainSector(sector).DrawClone("all");
1139	cam->GetAverageLoGainSector(sector).DrawClone("all");
1140	}
1141
1142	// Charges
1143	TCanvas &c21 = fDisplay->AddTab("FitCharge");
1144	c21.Divide(2, 4);
1145
1146	disp1.CamDraw(c21, 1, 2, 2, 1);
1147	disp2.CamDraw(c21, 2, 2, 2, 1);
1148
1149	// Reduced Sigmas
1150	TCanvas &c23 = fDisplay->AddTab("RedSigma");
1151	c23.Divide(2,4);
1152
1153	disp3.CamDraw(c23, 1, 2, 2, 1);
1154	disp4.CamDraw(c23, 2, 2, 2, 1);
1155
1156	// F-Factor
1157	TCanvas &c24 = fDisplay->AddTab("Phe's");
1158	c24.Divide(3,5);
1159
1160	disp5.CamDraw(c24, 1, 3, 2, 1, 1);
1161	disp6.CamDraw(c24, 2, 3, 2, 1, 1);
1162	disp7.CamDraw(c24, 3, 3, 2, 1, 1);
1163
1164	// QE's
1165	TCanvas &c25 = fDisplay->AddTab("QE's");
1166	c25.Divide(4,5);
1167
1168	disp8.CamDraw(c25, 1, 4, 2, 1, 1);
1169	disp9.CamDraw(c25, 2, 4, 2, 1, 1);
1170	disp10.CamDraw(c25, 3, 4, 2, 1, 1);
1171	disp11.CamDraw(c25, 4, 4, 2, 1, 1);
1172
1173	// Validity
1174	TCanvas &c26 = fDisplay->AddTab("Valid");
1175	c26.Divide(4,2);
1176
1177	disp12.CamDraw(c26, 1, 4, 0);
1178	disp13.CamDraw(c26, 2, 4, 0);
1179	disp14.CamDraw(c26, 3, 4, 0);
1180	disp15.CamDraw(c26, 4, 4, 0);
1181
1182	// Other info
1183	TCanvas &c27 = fDisplay->AddTab("HiLoGain");
1184	c27.Divide(3,3);
1185
1186	disp16.CamDraw(c27, 1, 3, 0);
1187	disp17.CamDraw(c27, 2, 3, 1);
1188	disp18.CamDraw(c27, 3, 3, 1);
1189
1190	// Pickup
1191	TCanvas &c28 = fDisplay->AddTab("Pickup");
1192	c28.Divide(4,2);
1193
1194	disp19.CamDraw(c28, 1, 4, 0);
1195	disp20.CamDraw(c28, 2, 4, 0);
1196	disp21.CamDraw(c28, 3, 4, 0);
1197	disp22.CamDraw(c28, 4, 4, 0);
1198
1199	// Defects
1200	TCanvas &c29 = fDisplay->AddTab("Defect");
1201	// c29.Divide(5,2);
1202	c29.Divide(4,2);
1203
1204	disp24.CamDraw(c29, 1, 4, 0);
1205	disp25.CamDraw(c29, 2, 4, 0);
1206	disp26.CamDraw(c29, 3, 4, 0);
1207	disp27.CamDraw(c29, 4, 4, 0);
1208
1209	// Abs. Times
1210	TCanvas &c30 = fDisplay->AddTab("AbsTimes");
1211	c30.Divide(2,3);
1212
1213	disp28.CamDraw(c30, 1, 2, 2);
1214	disp29.CamDraw(c30, 2, 2, 1);
1215
1216	if (IsRelTimes())
1217	{
1218	// Rel. Times
1219	TCanvas &c31 = fDisplay->AddTab("RelTimes");
1220	c31.Divide(3,5);
1221
1222	disp30.CamDraw(c31, 1, 3, 2, 1, 1);
1223	disp31.CamDraw(c31, 2, 3, 2, 1, 1);
1224	disp32.CamDraw(c31, 3, 3, 4, 1, 1);
1225
1226	// Time Defects
1227	TCanvas &c32 = fDisplay->AddTab("DefTime");
1228	c32.Divide(2,2);
1229
1230	disp33.CamDraw(c32, 1, 2, 0);
1231	disp34.CamDraw(c32, 2, 2, 0);
1232
1233	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationRelTimeCam");
1234
1235	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1236	{
1237	cam->GetAverageHiGainSector(sector).DrawClone("fourierevents");
1238	cam->GetAverageLoGainSector(sector).DrawClone("fourierevents");
1239	}
1240
1241	}
1242
1243	return;
1244	}
1245	}
1246
1247
1248	void MJCalibration::DisplayReferenceLines(MHCamera *cam, const Int_t what) const
1249	{
1250
1251	const MGeomCam *geom = cam->GetGeometry();
1252
1253	Double_t x = geom->InheritsFrom("MGeomCamMagic") ? 397 : cam->GetNbinsX() ;
1254
1255	TLine line;
1256	line.SetLineStyle(kDashed);
1257	line.SetLineWidth(3);
1258	line.SetLineColor(kBlue);
1259
1260	TLine *l1 = NULL;
1261
1262	switch (what)
1263	{
1264	case 0:
1265	l1 = line.DrawLine(0, fRefQEInner, x, fRefQEInner);
1266	break;
1267	case 1:
1268	l1 = line.DrawLine(0, fRefConvFADC2PheInner, x, fRefConvFADC2PheInner);
1269	break;
1270	case 2:
1271	l1 = line.DrawLine(0, fRefFADC2PheInner, x, fRefFADC2PheInner );
1272	break;
1273	case 3:
1274	l1 = line.DrawLine(0, fRefArrivalTimeInner, x, fRefArrivalTimeInner );
1275	break;
1276	case 4:
1277	l1 = line.DrawLine(0, fRefArrivalTimeRmsInner, x, fRefArrivalTimeRmsInner );
1278	break;
1279	case 5:
1280	l1 = line.DrawLine(0, fRefTimeOffsetInner, x, fRefTimeOffsetInner );
1281	break;
1282	case 6:
1283	l1 = line.DrawLine(0, fRefTimeResolutionInner, x, fRefTimeResolutionInner );
1284	break;
1285	default:
1286	break;
1287	}
1288
1289	if (geom->InheritsFrom("MGeomCamMagic"))
1290	{
1291	const Double_t x2 = cam->GetNbinsX();
1292
1293	switch (what)
1294	{
1295	case 0:
1296	line.DrawLine(x2, fRefQEOuter, 398, fRefQEOuter);
1297	break;
1298	case 1:
1299	line.DrawLine(x2, fRefConvFADC2PheOuter, 398, fRefConvFADC2PheOuter );
1300	break;
1301	case 2:
1302	line.DrawLine(x2, fRefFADC2PheOuter, 398, fRefFADC2PheOuter);
1303	break;
1304	case 3:
1305	line.DrawLine(x2, fRefArrivalTimeOuter, 398, fRefArrivalTimeOuter);
1306	break;
1307	case 4:
1308	line.DrawLine(x2, fRefArrivalTimeRmsOuter, 398, fRefArrivalTimeRmsOuter);
1309	break;
1310	case 5:
1311	line.DrawLine(x2, fRefTimeOffsetOuter, 398, fRefTimeOffsetOuter);
1312	break;
1313	case 6:
1314	line.DrawLine(x2, fRefTimeResolutionOuter, 398, fRefTimeResolutionOuter);
1315	break;
1316	default:
1317	break;
1318	}
1319	}
1320
1321	TLegend *leg = new TLegend(0.6,0.85,0.9 ,0.95);
1322	leg->SetBit(kCanDelete);
1323	leg->AddEntry(l1, "Reference","l");
1324	leg->Draw();
1325	}
1326
1327	void MJCalibration::DisplayOutliers(TH1D hist, const char whatsmall, const char* whatbig) const
1328	{
1329
1330	const Int_t kNotDraw = 1<<9;
1331	TF1 *f = hist->GetFunction("gaus");
1332	f->ResetBit(kNotDraw);
1333
1334	const Float_t mean = f->GetParameter(1);
1335	const Float_t lolim = mean - 4.0*f->GetParameter(2);
1336	const Float_t uplim = mean + 4.0*f->GetParameter(2);
1337	const Stat_t dead = hist->Integral(0,hist->FindBin(lolim)-1);
1338	const Stat_t noisy = hist->Integral(hist->FindBin(uplim)+1,hist->GetNbinsX()+1);
1339
1340	const Double_t max = hist->GetBinContent(hist->GetMaximumBin());
1341
1342	const Double_t minl = hist->GetBinCenter(hist->GetXaxis()->GetFirst());
1343	const Double_t maxl = hist->GetBinCenter(hist->GetXaxis()->GetLast());
1344
1345	TLatex deadtex;
1346	deadtex.SetTextSize(0.07);
1347	deadtex.DrawLatex(minl+0.015*(maxl-minl),max/1.1,
1348	Form("%3i %s pixels",(Int_t)dead,whatsmall));
1349
1350	TLatex noisytex;
1351	noisytex.SetTextSize(0.07);
1352	noisytex.DrawLatex(minl+0.015*(maxl-minl),max/1.2,
1353	Form("%3i %s pixels",(Int_t)noisy,whatbig));
1354
1355	}
1356
1357	void MJCalibration::FixDataCheckHist(TH1D *hist) const
1358	{
1359
1360	hist->SetDirectory(NULL);
1361
1362	//
1363	// set the labels bigger
1364	//
1365	TAxis *xaxe = hist->GetXaxis();
1366	TAxis *yaxe = hist->GetYaxis();
1367
1368	xaxe->CenterTitle();
1369	yaxe->CenterTitle();
1370	xaxe->SetTitleSize(0.06);
1371	yaxe->SetTitleSize(0.06);
1372	xaxe->SetTitleOffset(0.8);
1373	yaxe->SetTitleOffset(0.85);
1374	xaxe->SetLabelSize(0.05);
1375	yaxe->SetLabelSize(0.05);
1376
1377	}
1378
1379	const Int_t MJCalibration::CountBadPixels ( MHCamera *cam , const Int_t what ) const
1380	{
1381
1382	Int_t cnt = 0;
1383
1384	for (UInt_t pix=0; pix<cam->GetNumPixels();pix++)
1385	if ((Int_t)cam->GetPixContent(pix) == what)
1386	cnt++;
1387
1388	return cnt;
1389	}
1390
1391	// --------------------------------------------------------------------------
1392	//
1393	// Retrieve the output file written by WriteResult()
1394	//
1395	const char* MJCalibration::GetOutputFileName() const
1396	{
1397	return Form("calib%08d.root", fSequence.GetSequence());
1398	}
1399
1400	// --------------------------------------------------------------------------
1401	//
1402	// Read the following values from resource file:
1403	//
1404	// ConvFADC2PheMin
1405	// ConvFADC2PheMax
1406	// ConvFADC2PhotMin
1407	// ConvFADC2PhotMax
1408	//
1409	// QEMin
1410	// QEMax
1411	//
1412	// ArrivalTimeMin
1413	// ArrivalTimeMax
1414	//
1415	// TimeOffsetMin
1416	// TimeOffsetMax
1417	// TimeResolutionMin
1418	// TimeResolutionMax
1419	//
1420	// RefConvFADC2PheInner
1421	// RefConvFADC2PheOuter
1422	// RefConvFADC2PhotInner
1423	// RefConvFADC2PhotOuter
1424	//
1425	// RefQEInner
1426	// RefQEOuter
1427	//
1428	// RefArrivalTimeInner
1429	// RefArrivalTimeOuter
1430	// RefArrivalTimeRmsInner
1431	// RefArrivalTimeRmsOuter
1432	//
1433	// RefTimeOffsetInner
1434	// RefTimeOffsetOuter
1435	// RefTimeResolutionInner
1436	// RefTimeResolutionOuter
1437	//
1438	void MJCalibration::ReadReferenceFile()
1439	{
1440	TEnv refenv(fReferenceFile);
1441
1442	fConvFADC2PheMin = refenv.GetValue("ConvFADC2PheMin",fConvFADC2PheMin);
1443	fConvFADC2PheMax = refenv.GetValue("ConvFADC2PheMax",fConvFADC2PheMax);
1444	fConvFADC2PhotMin = refenv.GetValue("ConvFADC2PhotMin",fConvFADC2PhotMin);
1445	fConvFADC2PhotMax = refenv.GetValue("ConvFADC2PhotMax",fConvFADC2PhotMax);
1446	fQEMin = refenv.GetValue("QEMin",fQEMin);
1447	fQEMax = refenv.GetValue("QEMax",fQEMax);
1448	fArrivalTimeMin = refenv.GetValue("ArrivalTimeMin",fArrivalTimeMin);
1449	fArrivalTimeMax = refenv.GetValue("ArrivalTimeMax",fArrivalTimeMax);
1450	fTimeOffsetMin = refenv.GetValue("TimeOffsetMin",fTimeOffsetMin);
1451	fTimeOffsetMax = refenv.GetValue("TimeOffsetMax",fTimeOffsetMax);
1452	fTimeResolutionMin = refenv.GetValue("TimeResolutionMin",fTimeResolutionMin);
1453	fTimeResolutionMax = refenv.GetValue("TimeResolutionMax",fTimeResolutionMax);
1454
1455	fRefFADC2PheInner = refenv.GetValue("RefFADC2PheInner",fRefFADC2PheInner);
1456	fRefFADC2PheOuter = refenv.GetValue("RefFADC2PheOuter",fRefFADC2PheOuter);
1457	fRefConvFADC2PhotInner = refenv.GetValue("RefConvFADC2PhotInner",fRefConvFADC2PhotInner);
1458	fRefConvFADC2PhotOuter = refenv.GetValue("RefConvFADC2PhotOuter",fRefConvFADC2PhotOuter);
1459	fRefConvFADC2PheInner = refenv.GetValue("RefConvFADC2PheInner",fRefConvFADC2PheInner);
1460	fRefConvFADC2PheOuter = refenv.GetValue("RefConvFADC2PheOuter",fRefConvFADC2PheOuter);
1461	fRefQEInner = refenv.GetValue("RefQEInner",fRefQEInner);
1462	fRefQEOuter = refenv.GetValue("RefQEOuter",fRefQEOuter);
1463	fRefArrivalTimeInner = refenv.GetValue("RefArrivalTimeInner",fRefArrivalTimeInner);
1464	fRefArrivalTimeOuter = refenv.GetValue("RefArrivalTimeOuter",fRefArrivalTimeOuter);
1465	fRefArrivalTimeRmsInner = refenv.GetValue("RefArrivalTimeRmsInner",fRefArrivalTimeRmsInner);
1466	fRefArrivalTimeRmsOuter = refenv.GetValue("RefArrivalTimeRmsOuter",fRefArrivalTimeRmsOuter);
1467	fRefTimeOffsetInner = refenv.GetValue("RefTimeOffsetInner",fRefTimeOffsetInner);
1468	fRefTimeOffsetOuter = refenv.GetValue("RefTimeOffsetOuter",fRefTimeOffsetOuter);
1469	fRefTimeResolutionInner = refenv.GetValue("RefTimeResolutionInner",fRefTimeResolutionInner);
1470	fRefTimeResolutionOuter = refenv.GetValue("RefTimeResolutionOuter",fRefTimeResolutionOuter);
1471	}
1472
1473	// --------------------------------------------------------------------------
1474	//
1475	// Read the following values from resource file:
1476	//
1477	// MCalibrationHiLoCam
1478	//
1479	Bool_t MJCalibration::ReadHiLoCalibFile()
1480	{
1481
1482	if (!fIsHiLoCalibration)
1483	return kTRUE;
1484
1485	TFile file(fHiLoCalibFile,"READ");
1486	if (!file.IsOpen())
1487	{
1488	*fLog << err << "ERROR - Couldn't open hi-lo intercalibration file " << fHiLoCalibFile << " for reading..." << endl;
1489	return kFALSE;
1490	}
1491
1492	MCalibrationHiLoCam hilocam;
1493
1494	*fLog << all << "Initializing High gain vs. Low gain intercalibration from " << fHiLoCalibFile << endl;
1495	*fLog << all << endl;
1496
1497	if (hilocam.Read()<=0)
1498	{
1499	*fLog << err << "Unable to read MCalibrationHiLoCam from " << fHiLoCalibFile << endl;
1500	return kFALSE;
1501	}
1502
1503	if (hilocam.GetSize() < 1)
1504	{
1505	*fLog << err << "MCalibationHiLoCam is un-initialized in file " << fHiLoCalibFile << endl;
1506	return kFALSE;
1507	}
1508
1509	if (fCalibrationCam.GetSize() < 1)
1510	fCalibrationCam.InitSize(hilocam.GetSize());
1511
1512	if (fBadPixels.GetSize() < 1)
1513	fBadPixels.InitSize(hilocam.GetSize());
1514
1515	if (fCalibrationCam.GetSize() != hilocam.GetSize())
1516	{
1517	*fLog << err << "Size mismatch MCalibationHiLoCam and MCalibrationChargeCam " << endl;
1518	return kFALSE;
1519	}
1520
1521	for (Int_t i=0;i<hilocam.GetSize();i++)
1522	{
1523	const MCalibrationHiLoPix &pix = (MCalibrationHiLoPix&)hilocam[i];
1524
1525	const Float_t ratio = pix.GetHiLoChargeRatio();
1526	const Float_t sigma = pix.GetHiLoChargeRatioSigma();
1527
1528	if (ratio < 0.)
1529	{
1530	fBadPixels[i].SetUncalibrated(MBadPixelsPix::kConversionHiLoNotValid);
1531	continue;
1532	}
1533
1534	MCalibrationChargePix &cpix = (MCalibrationChargePix&)fCalibrationCam[i];
1535
1536	cpix.SetConversionHiLo(ratio);
1537	cpix.SetConversionHiLoErr(sigma);
1538	}
1539
1540	return kTRUE;
1541	}
1542
1543	// --------------------------------------------------------------------------
1544	//
1545	// MJCalibration allows to setup several option by a resource file:
1546	// MJCalibration.Display: full, datacheck, normal
1547	// MJCalibration.RelTimeCalibration: yes,no
1548	// MJCalibration.DataCheck: yes,no
1549	// MJCalibration.Debug: yes,no
1550	// MJCalibration.Intensity: yes,no
1551	// MJCalibration.UseBlindPixel: yes,no
1552	// MJCalibration.UsePINDiode: yes,no
1553	// MJCalibration.Geometry: MGeomCamMagic, MGeomCamECO1000
1554	//
1555	// Name of a file containing reference values (see ReadReferenceFile)
1556	// Prefix.ReferenceFile: filename
1557	// (see ReadReferenceFile)
1558	//
1559	// For more details see the class description and the corresponding Getters
1560	//
1561	Bool_t MJCalibration::CheckEnvLocal()
1562	{
1563
1564	TString dis = GetEnv("Display", "");
1565	if (dis.BeginsWith("Full", TString::kIgnoreCase))
1566	SetFullDisplay();
1567	if (dis.BeginsWith("DataCheck", TString::kIgnoreCase))
1568	SetDataCheckDisplay();
1569	if (dis.BeginsWith("Normal", TString::kIgnoreCase))
1570	SetNormalDisplay();
1571
1572	if (!MJCalib::CheckEnvLocal())
1573	return kFALSE;
1574
1575	SetRelTimeCalibration(GetEnv("RelTimeCalibration", IsRelTimes()));
1576	SetIntensity(GetEnv("IntensityCalibration", IsIntensity()));
1577	SetDebug(GetEnv("Debug", IsDebug()));
1578
1579	SetUseBlindPixel(GetEnv("UseBlindPixel", IsUseBlindPixel()));
1580	SetUsePINDiode(GetEnv("UsePINDiode", IsUsePINDiode()));
1581	SetGeometry(GetEnv("Geometry", fGeometry));
1582
1583	fReferenceFile = GetEnv("ReferenceFile",fReferenceFile.Data());
1584	ReadReferenceFile();
1585
1586	fHiLoCalibFile = GetEnv("HiLoCalibFile",fHiLoCalibFile.Data());
1587
1588	if (IsUseMC() && !fHiLoCalibFile.EndsWith("_mc.root"))
1589	{
1590	if (!fHiLoCalibFile.EndsWith(".root"))
1591	{
1592	*fLog << warn << "WARNING - Hi-/Lo-Gain intercalibration file ";
1593	*fLog << fHiLoCalibFile << " has not .root as extension..." << endl;
1594	}
1595	else
1596	fHiLoCalibFile.Insert(fHiLoCalibFile.Length()-5, "_mc");
1597	}
1598
1599	return ReadHiLoCalibFile();
1600	}
1601
1602	void MJCalibration::InitBlindPixel(MExtractBlindPixel &blindext,
1603	MHCalibrationChargeBlindCam &blindcam)
1604	{
1605
1606	Int_t run = fSequence.GetLastRun();
1607
1608	//
1609	// Initialize the blind pixel. Unfortunately, there is a hardware difference
1610	// in the first blind pixel until run "gkSecondBlindPixelInstallation" and the
1611	// later setup. The first needs to use a filter because of the length of
1612	// spurious NSB photon signals. The latter get better along extracting the amplitude
1613	// from a small window.
1614	//
1615	if (run < gkSecondBlindPixelInstallation)
1616	{
1617	MCalibrationBlindCamOneOldStyle blindresults;
1618	if (IsIntensity())
1619	blindresults.Copy(*fIntensBlindCam.GetCam());
1620	else
1621	blindresults.Copy(fCalibrationBlindCam);
1622
1623	blindext.SetExtractionType(MExtractBlindPixel::kIntegral);
1624	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1625	blindext.SetRange(10,19,0,6);
1626	blindext.SetNSBFilterLimit(70);
1627	}
1628	else if (run < gkThirdBlindPixelInstallation)
1629	{
1630
1631	MCalibrationBlindCamTwoNewStyle blindresults;
1632
1633	if (IsIntensity())
1634	blindresults.Copy(*fIntensBlindCam.GetCam());
1635	else
1636	blindresults.Copy(fCalibrationBlindCam);
1637
1638	blindext.SetNumBlindPixels(blindresults.GetSize());
1639	for (Int_t i=0;i<blindresults.GetSize();i++)
1640	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1641
1642	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1643	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1644	blindext.SetRange(5,8,0,2);
1645	blindext.SetNSBFilterLimit(38);
1646
1647	}
1648	else
1649	{
1650
1651	MCalibrationBlindCamThreeNewStyle blindresults;
1652
1653	if (IsIntensity())
1654	blindresults.Copy(*fIntensBlindCam.GetCam());
1655	else
1656	blindresults.Copy(fCalibrationBlindCam);
1657
1658	blindext.SetNumBlindPixels(blindresults.GetSize());
1659
1660	for (Int_t i=0;i<blindresults.GetSize();i++)
1661	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1662
1663	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1664	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1665	blindext.SetDataType(MExtractBlindPixel::kRawEvt2);
1666	blindext.SetRange(5,8,0,2);
1667	blindext.SetNSBFilterLimit(38);
1668
1669	}
1670
1671	}
1672
1673	// --------------------------------------------------------------------------
1674	//
1675	// Execute the task list and the eventloop:
1676	//
1677	// - Check the colour of the files in fRuns (FindColor()), otherwise return
1678	// - Check for consistency between run numbers and number of files
1679	// - Add fRuns to MReadMarsFile
1680	// - Put into MParList:
1681	// 1) MPedestalCam (pedcam)
1682	// 2) MCalibrationQECam (fQECam)
1683	// 3) MCalibrationChargeCam (fCalibrationCam)
1684	// 4) MCalibrationRelTimeCam (fRelTimeCam) (only if flag IsRelTimes() is chosen)
1685	// 5) MBadPixelsCam (fBadPixels)
1686	// 6) MCalibrationChargePINDiode
1687	// 7) MCalibrationBlindPix
1688	// - Put into the MTaskList:
1689	// 1) MReadMarsFile
1690	// 2) MBadPixelsMerge
1691	// 3) MGeomApply
1692	// 4) MExtractor
1693	// 5) MExtractPINDiode
1694	// 6) MExtractBlindPixel
1695	// 7) MExtractTime (only if flag IsRelTimes() is chosen)
1696	// 8) MContinue(MFCosmics)
1697	// 9) MFillH("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode")
1698	// 10) MFillH("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam")
1699	// 11) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam")
1700	// 12) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillRelTime")
1701	// 13) MCalibrationChargeCalc
1702	// 14) MFillH("MHCalibrationRelTimeCam", "MArrivalTimeCam") (only if flag IsRelTimes() is chosen)
1703	// 15) MCalibrationRelTimeCalc
1704	// - Execute MEvtLoop
1705	// - DisplayResult()
1706	// - WriteResult()
1707	//
1708	Bool_t MJCalibration::Process(MPedestalCam &pedcam)
1709	{
1710	if (!fSequence.IsValid())
1711	{
1712	*fLog << err << "ERROR - Sequence invalid..." << endl;
1713	return kFALSE;
1714	}
1715
1716	*fLog << inf;
1717	fLog->Separator(GetDescriptor());
1718	*fLog << "Calculate calibration constants from Sequence #";
1719	*fLog << fSequence.GetSequence() << endl << endl;
1720
1721	// --------------------------------------------------------------------------------
1722
1723	if (!CheckEnv())
1724	return kFALSE;
1725
1726	// --------------------------------------------------------------------------------
1727
1728	// Setup Tasklist
1729	MParList plist;
1730	MTaskList tlist;
1731	plist.AddToList(&tlist);
1732	plist.AddToList(this); // take care of fDisplay!
1733
1734	MDirIter iter;
1735	const Int_t n0 = fSequence.SetupCalRuns(iter, fPathData, IsUseRawData());
1736	const Int_t n1 = fSequence.GetNumCalRuns();
1737	if (n0==0)
1738	{
1739	*fLog << err << "ERROR - No input files of sequence found!" << endl;
1740	return kFALSE;
1741	}
1742	if (n0!=n1)
1743	{
1744	*fLog << err << "ERROR - Number of files found ("
1745	<< n0 << ") doesn't match number of files in sequence ("
1746	<< n1 << ")" << endl;
1747	if (fLog->GetDebugLevel()>4)
1748	{
1749	*fLog << dbg << "Files which are searched:" << endl;
1750	iter.Print();
1751	}
1752	return kFALSE;
1753	}
1754
1755	//
1756	// Input containers
1757	//
1758	pedcam.SetName("MPedestalCam"); // MPedestalFundamental
1759	plist.AddToList(&pedcam);
1760	plist.AddToList(&fBadPixels);
1761
1762	//
1763	// Calibration Results containers
1764	//
1765	if (IsIntensity())
1766	{
1767	plist.AddToList(&fIntensQECam);
1768	plist.AddToList(&fIntensCalibCam);
1769	// plist.AddToList(&fIntensCalibrationPINDiode);
1770	plist.AddToList(&fIntensRelTimeCam);
1771	plist.AddToList(&fIntensBadCam);
1772	if (IsUseBlindPixel())
1773	plist.AddToList(&fIntensBlindCam);
1774	}
1775	else
1776	{
1777	plist.AddToList(&fQECam);
1778	plist.AddToList(&fCalibrationCam);
1779	plist.AddToList(&fRelTimeCam);
1780	if (IsUseBlindPixel())
1781	plist.AddToList(&fCalibrationBlindCam);
1782	if (IsUsePINDiode())
1783	plist.AddToList(&fCalibrationPINDiode);
1784	}
1785
1786	//
1787	// Initialize two histogram containers which could be modified in this class
1788	//
1789	MHCalibrationRelTimeCam reltimecam;
1790	MHCalibrationChargeCam chargecam;
1791	MHCalibrationChargeBlindCam blindcam;
1792	plist.AddToList(&chargecam);
1793
1794	if (IsUseBlindPixel())
1795	plist.AddToList(&blindcam);
1796	if (IsRelTimes())
1797	plist.AddToList(&reltimecam);
1798	//
1799	// Data Reading tasks
1800	//
1801	MReadMarsFile read("Events");
1802	MRawFileRead rawread(NULL);
1803
1804	if (IsUseRawData())
1805	{
1806	rawread.AddFiles(iter);
1807	tlist.AddToList(&rawread);
1808	}
1809	else
1810	{
1811	read.DisableAutoScheme();
1812	read.AddFiles(iter);
1813	tlist.AddToList(&read);
1814	}
1815
1816	//
1817	// Other Tasks
1818	//
1819
1820	// Set the default for data version earlier than 5, where no valid
1821	// trigger pattern exists. There should not be pin diode or other
1822	// types of events inside the calibration files which should be skipped,
1823	// anyway. So we set the default such that the MContinue ccalib
1824	// will never be executed.
1825	MTriggerPatternDecode trgpat;
1826	MFTriggerPattern fcalib("CalibFilter");
1827	fcalib.SetDefault(kFALSE);
1828	fcalib.DenyCalibration(MFTriggerPattern::kPrescaled);
1829
1830	MContinue ccalib(&fcalib,"ContTrigPattern");
1831
1832	MCalibrationPatternDecode decode;
1833	MGeomApply apply;
1834	apply.SetGeometry(fGeometry);
1835
1836	MBadPixelsMerge merge(&fBadPixels);
1837	MExtractPINDiode pinext;
1838	MExtractBlindPixel blindext;
1839
1840	if (IsUseBlindPixel())
1841	InitBlindPixel(blindext, blindcam);
1842
1843	MExtractSlidingWindow extract2;
1844	MExtractTimeHighestIntegral timehigh;
1845	MCalibrationChargeCalc calcalc;
1846	MCalibrationRelTimeCalc timecalc;
1847	calcalc.SetOutputFile("");
1848	timecalc.SetOutputFile("");
1849
1850	if (IsDebug())
1851	{
1852	chargecam.SetDebug();
1853	calcalc.SetDebug();
1854	}
1855
1856	//
1857	// Calibration histogramming
1858	//
1859	MFillH fillpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
1860	MFillH fillbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
1861	MFillH fillcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
1862	MFillH filltme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
1863	fillpin.SetBit(MFillH::kDoNotDisplay);
1864	fillbnd.SetBit(MFillH::kDoNotDisplay);
1865	fillcam.SetBit(MFillH::kDoNotDisplay);
1866	filltme.SetBit(MFillH::kDoNotDisplay);
1867
1868	//
1869	// Set default extractors in case, none has been set...
1870	//
1871	if (!fExtractor)
1872	fExtractor = &extract2;
1873	if (!fTimeExtractor)
1874	fTimeExtractor = &timehigh;
1875
1876	const Bool_t istimecharge = fExtractor->InheritsFrom("MExtractTimeAndCharge");
1877	//
1878	// Look if the extractor is a pure charge or also a time extractor
1879	//
1880	if (istimecharge)
1881	{
1882	if (fExtractorCam.GetSize() == pedcam.GetSize())
1883	calcalc.SetPedestals(&fExtractorCam);
1884	else
1885	{
1886	*fLog << err << GetDescriptor() << "ERROR - ";
1887	*fLog << "Used Extractor derives from MExtractTimeAndCharge, " << endl;
1888	*fLog << "but MExtractorCam size " << fExtractorCam.GetSize() << " ";
1889	*fLog << "mismatch pedcam size " << pedcam.GetSize() << "! " << endl;
1890	return kFALSE;
1891	}
1892	}
1893
1894	//
1895	// Setup more tasks and tasklist
1896	//
1897	MTaskEnv taskenv("ExtractSignal");
1898	taskenv.SetDefault(fExtractor);
1899
1900	tlist.AddToList(&trgpat);
1901	tlist.AddToList(&ccalib);
1902	tlist.AddToList(&decode);
1903	tlist.AddToList(&merge);
1904	tlist.AddToList(&apply);
1905
1906	MPedCalcPedRun pedcalc;
1907	pedcalc.SetExtractWindow(fExtractor->GetHiGainFirst(),TMath::Nint(fExtractor->GetNumHiGainSamples()));
1908
1909	if (IsIntensity())
1910	tlist.AddToList(&pedcalc);
1911
1912	MCalibColorSet colorset;
1913	tlist.AddToList(&colorset);
1914
1915	tlist.AddToList(&taskenv);
1916
1917	if (IsUsePINDiode())
1918	tlist.AddToList(&pinext);
1919	if (IsUseBlindPixel())
1920	tlist.AddToList(&blindext);
1921
1922	MTaskEnv taskenv2("ExtractTime");
1923	if (!istimecharge)
1924	{
1925	taskenv2.SetDefault(fTimeExtractor);
1926
1927	if (IsRelTimes())
1928	tlist.AddToList(&taskenv2);
1929	}
1930
1931	//
1932	// Apply a filter against cosmics
1933	// (will have to be needed in the future
1934	// when the calibration hardware-trigger is working)
1935	//
1936	MFCosmics cosmics;
1937	MContinue cont(&cosmics);
1938
1939	if (fColor == MCalibrationCam::kCT1)
1940	tlist.AddToList(&cont);
1941
1942	MCalibColorSteer steer;
1943	if (IsIntensity())
1944	tlist.AddToList(&steer);
1945
1946	tlist.AddToList(&fillcam);
1947
1948	if (IsRelTimes())
1949	{
1950	tlist.AddToList(&filltme);
1951	tlist.AddToList(&timecalc);
1952	}
1953
1954	if (IsUseBlindPixel())
1955	tlist.AddToList(&fillbnd);
1956	if (IsUsePINDiode())
1957	tlist.AddToList(&fillpin);
1958
1959	tlist.AddToList(&calcalc);
1960
1961	// Create and setup the eventloop
1962	MEvtLoop evtloop(fName);
1963	evtloop.SetParList(&plist);
1964	evtloop.SetDisplay(fDisplay);
1965	evtloop.SetLogStream(fLog);
1966	if (!SetupEnv(evtloop))
1967	return kFALSE;
1968
1969	if (!taskenv.GetTask() && !taskenv2.GetTask())
1970	{
1971	*fLog << err << "ERROR - Neither ExtractSignal nor ExtractTime initialized or both '<dummy>'." << endl;
1972	return kFALSE;
1973	}
1974
1975	if (!WriteTasks(taskenv.GetTask(), istimecharge ? 0 : taskenv2.GetTask()))
1976	return kFALSE;
1977
1978	// Execute first analysis
1979	if (!evtloop.Eventloop())
1980	{
1981	DisplayResult(plist);
1982	WriteResult(plist);
1983	*fLog << err << GetDescriptor() << ": Failed." << endl;
1984	return kFALSE;
1985	}
1986
1987	tlist.PrintStatistics();
1988
1989	// --------------------------------------------------------------------------------
1990
1991	if (fIsPixelCheck)
1992	{
1993	MHCalibrationChargeCam hcam = (MHCalibrationChargeCam)plist.FindObject("MHCalibrationChargeCam");
1994	MHCalibrationChargePix &pix1 = (MHCalibrationChargePix&)(*hcam)[fCheckedPixId];
1995	pix1.DrawClone("");
1996
1997	MHCalibrationChargePix &pix2 = (MHCalibrationChargePix&)(*hcam)(fCheckedPixId);
1998	pix2.DrawClone("");
1999
2000	if (IsRelTimes())
2001	{
2002	MHCalibrationRelTimeCam hccam = (MHCalibrationRelTimeCam)plist.FindObject("MHCalibrationRelTimeCam");
2003	MHCalibrationPix &pix11 = (*hccam)[fCheckedPixId];
2004	pix11.DrawClone("");
2005	MHCalibrationPix &pix12 = (*hccam)(fCheckedPixId);
2006	pix12.DrawClone("");
2007	}
2008	}
2009
2010	if (!fCalibrationPINDiode.IsValid())
2011	SetUsePINDiode(kFALSE);
2012
2013	DisplayResult(plist);
2014
2015	if (!WriteResult(plist))
2016	return kFALSE;
2017
2018	*fLog << all << GetDescriptor() << ": Done." << endl;
2019
2020	return kTRUE;
2021	}
2022
2023	/*
2024	Bool_t MJCalibration::WriteEventloop(MEvtLoop &evtloop) const
2025	{
2026	if (IsNoStorage())
2027	return kTRUE;
2028
2029	if (fPathOut.IsNull())
2030	return kTRUE;
2031
2032	const TString oname(GetOutputFile());
2033
2034	*fLog << inf << "Writing to file: " << oname << endl;
2035
2036	TFile file(oname, fOverwrite?"RECREATE":"NEW", "File created by MJCalibration", 9);
2037	if (!file.IsOpen())
2038	{
2039	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
2040	return kFALSE;
2041	}
2042
2043	if (evtloop.Write(fName)<=0)
2044	{
2045	*fLog << err << "Unable to write MEvtloop to " << oname << endl;
2046	return kFALSE;
2047	}
2048
2049	return kTRUE;
2050	}
2051	*/
2052
2053	Bool_t MJCalibration::WriteTasks(MTask t1, MTask t2) const
2054	{
2055	if (IsNoStorage())
2056	return kTRUE;
2057
2058	TObjArray cont;
2059	if (t1)
2060	cont.Add(t1);
2061	if (t2)
2062	cont.Add(t2);
2063
2064	return WriteContainer(cont, GetOutputFileName(), fOverwrite?"RECREATE":"NEW");
2065	}
2066
2067	// --------------------------------------------------------------------------
2068	//
2069	// Write the result into the output file GetOutputFile(), if fOutputPath exists.
2070	//
2071	// The following containers are written:
2072	// - MStatusDisplay
2073	// - MCalibrationChargeCam or MCalibrationIntensityChargeCam
2074	// - MCalibrationBlindCam or MCalibrationIntensityBlindCam
2075	// - MCalibrationQECam or MCalibrationIntensityQECam
2076	// - MCalibrationChargePINDiode
2077	// - MBadPixelsCam
2078	// If the flag kRelTimes is set, then also:
2079	// - MCalibrationRelTimeCam or MCalibrationIntensityRelTimeCam
2080	//
2081	Bool_t MJCalibration::WriteResult(MParList &plist)
2082	{
2083	if (IsNoStorage())
2084	return kTRUE;
2085
2086	TObjArray cont;
2087
2088	if (IsIntensity())
2089	{
2090	cont.Add(&fIntensBadCam);
2091	cont.Add(&fIntensCalibCam);
2092	cont.Add(&fIntensQECam);
2093	cont.Add(&fIntensBlindCam);
2094	}
2095	else
2096	{
2097	cont.Add(&fBadPixels);
2098	cont.Add(&fCalibrationCam);
2099	cont.Add(&fQECam);
2100	cont.Add(&fCalibrationBlindCam);
2101	}
2102	cont.Add(&fCalibrationPINDiode);
2103
2104	//if (IsRelTimes())
2105	cont.Add(IsIntensity() ? (TObject)&fIntensRelTimeCam : (TObject)&fRelTimeCam);
2106
2107	if (fExtractorCam.GetSize() != 0)
2108	cont.Add(&fExtractorCam);
2109
2110	TObject *pedcam = plist.FindObject("MPedestalCam");
2111	if (!pedcam)
2112	*fLog << warn << " - WARNING - MPedestalCam (fundamental)... not found for writing!" << endl;
2113	else
2114	cont.Add(pedcam);
2115
2116	TObject *geom = plist.FindObject("MGeomCam");
2117	if (!geom)
2118	*fLog << warn << " - WARNING - MGeomCam... not found for writing!" << endl;
2119	else
2120	cont.Add(geom);
2121
2122	if (IsHistsStorage())
2123	{
2124	cont.Add(plist.FindObject("MHCalibrationChargeCam"));
2125	cont.Add(plist.FindObject("MHCalibrationChargeBlindCam"));
2126	cont.Add(plist.FindObject("MHCalibrationChargePINDiode"));
2127	if (IsRelTimes())
2128	cont.Add(plist.FindObject("MHCalibrationRelTimeCam"));
2129	}
2130
2131	return WriteContainer(cont, GetOutputFileName(), "UPDATE");
2132	}
2133
2134	void MJCalibration::DisplayDoubleProject(MHCamera cam, const char whatsmall, const char* whatbig) const
2135	{
2136
2137	TArrayI inner(1);
2138	inner[0] = 0;
2139
2140	TArrayI outer(1);
2141	outer[0] = 1;
2142
2143	TArrayI s1(3);
2144	s1[0] = 6;
2145	s1[1] = 1;
2146	s1[2] = 2;
2147
2148	TArrayI s2(3);
2149	s2[0] = 3;
2150	s2[1] = 4;
2151	s2[2] = 5;
2152
2153	TVirtualPad *pad = gPad;
2154	pad->Divide(2,1);
2155
2156	TH1D *inout[2];
2157
2158	for (int i=0; i<2; i++)
2159	{
2160	pad->cd(i+1);
2161	gPad->SetBorderMode(0);
2162	gPad->SetTicks();
2163
2164	inout[i] = cam->ProjectionS(TArrayI(), TArrayI(1,&i), i==0 ? "Inner" : "Outer");
2165	FixDataCheckHist(inout[i]);
2166	inout[i]->SetTitle(Form("%s %s",cam->GetTitle(),i==0 ? "Inner" : "Outer"));
2167	inout[i]->SetDirectory(NULL);
2168	inout[i]->SetLineColor(kRed+i);
2169	inout[i]->SetBit(kCanDelete);
2170	inout[i]->Draw();
2171	//
2172	// Display the outliers as dead and noisy pixels
2173	//
2174	if (!inout[i]->Fit("gaus","0Q"))
2175	DisplayOutliers(inout[i],whatsmall,whatbig);
2176
2177	gPad->Modified();
2178	gPad->Update();
2179	TPaveStats st = (TPaveStats)inout[i]->GetListOfFunctions()->FindObject("stats");
2180	st->SetY1NDC(0.6);
2181	st->SetY2NDC(0.9);
2182	st->SetX1NDC(0.55);
2183	st->SetX2NDC(0.99);
2184	gPad->Modified();
2185	gPad->Update();
2186
2187	TLegend *leg2 = new TLegend(0.55,0.4,0.99,0.6);
2188
2189	//
2190	// Display the two half of the camera separately
2191	//
2192	TH1D *half[2];
2193	half[0] = cam->ProjectionS(s1, TArrayI(1,&i), "Sector 6-1-2");
2194	half[1] = cam->ProjectionS(s2, TArrayI(1,&i), "Sector 3-4-5");
2195
2196	for (int j=0; j<2; j++)
2197	{
2198	half[j]->SetLineColor(kRed+i+2*j+1);
2199	half[j]->SetDirectory(NULL);
2200	half[j]->SetBit(kCanDelete);
2201	half[j]->Draw("same");
2202	leg2->AddEntry(half[j], half[j]->GetName(), "l");
2203	}
2204	leg2->Draw();
2205	}
2206	}

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