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Last change on this file since 8076 was 8038, checked in by tbretz, 18 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	! Author(s): Markus Gaug, 02/2004 <mailto:markus@ifae.es>
20	!
21	! Copyright: MAGIC Software Development, 2000-2005
22	!
23	!
24	\* ======================================================================== */
25
26	/////////////////////////////////////////////////////////////////////////////
27	//
28	// MJCalibration
29	//
30	// Do one calibration loop over serious of runs with the same pulser
31	// colour and the same intensity. The following containers (rectangular) and
32	// tasks (ellipses) are called to produce an MCalibrationChargeCam and to
33	// update the MCalibrationQECam: (MCalibrate is not called from this class)
34	//
35	//Begin_Html
36	/*
37	<img src="images/CalibClasses.gif">
38	*/
39	//End_Html
40	//
41	// Different signal extractors can be set with the command SetExtractor()
42	// Only extractors deriving from MExtractor can be set, default is MExtractSlidingWindow
43	//
44	// Different arrival time extractors can be set with the command SetTimeExtractor()
45	// Only extractors deriving from MExtractTime can be set, default is MExtractTimeHighestIntegral
46	//
47	// At the end of the eventloop, plots and results are displayed, depending on
48	// the flags set (see DisplayResult())
49	//
50	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
51	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
52	// Otherwise, (default: SetNormalDisplay()), a good selection of plots is given
53	//
54	// The absolute light calibration devices Blind Pixel and PIN Diode can be switched on
55	// and off with the commands:
56	//
57	// - SetUseBlindPixel(Bool_t )
58	// - SetUsePINDiode(Bool_t )
59	//
60	// See also: MHCalibrationChargePix, MHCalibrationChargeCam, MHGausEvents
61	// MHCalibrationChargeBlindPix, MHCalibrationChargePINDiode
62	// MCalibrationChargePix, MCalibrationChargeCam, MCalibrationChargeCalc
63	// MCalibrationBlindPix, MCalibrationChargePINDiode,
64	// MCalibrationQECam, MBadPixelsPix, MBadPixelsCam
65	//
66	// If the flag RelTimeCalibration() is set, a calibration of the relative arrival
67	// times is also performed. The following containers (rectangular) and
68	// tasks (ellipses) are called to produce an MCalibrationRelTimeCam used by
69	// MCalibrateTime to correct timing offset between pixels: (MCalibrateTime is not
70	// called from this class)
71	//
72	//Begin_Html
73	/*
74	<img src="images/RelTimeClasses.gif">
75	*/
76	//End_Html
77	//
78	// Different arrival time extractors can be set directly with the command
79	// SetTimeExtractor(MExtractor *)
80	//
81	// Resource file entries are case sensitive!
82	//
83	// See also: MHCalibrationRelTimePix, MHCalibrationRelTimeCam, MHGausEvents
84	// MCalibrationRelTimePix, MCalibrationRelTimeCam
85	// MBadPixelsPix, MBadPixelsCam
86	//
87	/////////////////////////////////////////////////////////////////////////////
88	#include "MJCalibration.h"
89
90	#include <TFile.h>
91	#include <TF1.h>
92	#include <TStyle.h>
93	#include <TCanvas.h>
94	#include <TSystem.h>
95	#include <TLine.h>
96	#include <TLatex.h>
97	#include <TLegend.h>
98	#include <TRegexp.h>
99	#include <TPaveText.h>
100	#include <TPaveStats.h>
101	#include <TEnv.h>
102
103	#include "MLog.h"
104	#include "MLogManip.h"
105
106	#include "MRunIter.h"
107	#include "MSequence.h"
108	#include "MParList.h"
109	#include "MTaskList.h"
110	#include "MEvtLoop.h"
111
112	#include "MHCamera.h"
113	#include "MGeomCam.h"
114
115	#include "MPedestalCam.h"
116	#include "MCalibColorSteer.h"
117
118	#include "MCalibrationIntensityChargeCam.h"
119	#include "MCalibrationIntensityBlindCam.h"
120	#include "MCalibrationIntensityRelTimeCam.h"
121	#include "MCalibrationIntensityQECam.h"
122
123	#include "MCalibrationPatternDecode.h"
124	#include "MCalibrationCam.h"
125	#include "MCalibrationHiLoCam.h"
126	#include "MCalibrationHiLoPix.h"
127	#include "MCalibrationQECam.h"
128	#include "MCalibrationQEPix.h"
129	#include "MCalibrationChargeCam.h"
130	#include "MCalibrationChargePix.h"
131	#include "MCalibrationChargePINDiode.h"
132	#include "MCalibrationBlindPix.h"
133	#include "MCalibrationBlindCam.h"
134	#include "MCalibrationBlindCamOneOldStyle.h"
135	#include "MCalibrationBlindCamTwoNewStyle.h"
136	#include "MCalibrationBlindCamThreeNewStyle.h"
137	#include "MCalibrationChargeCalc.h"
138	#include "MCalibColorSet.h"
139	#include "MCalibrationRelTimeCam.h"
140	#include "MCalibrationRelTimeCalc.h"
141
142	#include "MHGausEvents.h"
143	#include "MHCalibrationCam.h"
144	#include "MHCalibrationChargeCam.h"
145	#include "MHCalibrationChargeBlindCam.h"
146	#include "MHCalibrationChargePINDiode.h"
147	#include "MHCalibrationRelTimeCam.h"
148	#include "MHCalibrationPix.h"
149
150	#include "MHCamEvent.h"
151
152	#include "MReadMarsFile.h"
153	#include "MPedCalcPedRun.h"
154	#include "MRawFileRead.h"
155	#include "MGeomApply.h"
156	#include "MTaskEnv.h"
157	#include "MBadPixelsMerge.h"
158	#include "MBadPixelsCam.h"
159	#include "MExtractTime.h"
160	#include "MExtractor.h"
161	#include "MExtractPINDiode.h"
162	#include "MExtractBlindPixel.h"
163	//#include "MExtractSlidingWindow.h"
164	//#include "MExtractTimeHighestIntegral.h"
165	#include "MExtractTimeAndChargeSpline.h"
166	#include "MFCosmics.h"
167	#include "MFTriggerPattern.h"
168	#include "MContinue.h"
169	#include "MFillH.h"
170
171	#include "MTriggerPatternDecode.h"
172
173	#include "MArrivalTimeCam.h"
174
175	#include "MStatusDisplay.h"
176
177	ClassImp(MJCalibration);
178
179	using namespace std;
180
181	const Int_t MJCalibration::gkIFAEBoxInaugurationRun = 20113;
182	const Int_t MJCalibration::gkSecondBlindPixelInstallation = 31693;
183	const Int_t MJCalibration::gkSpecialPixelsContInstallation = 34057;
184	const Int_t MJCalibration::gkThirdBlindPixelInstallation = 43308;
185	const TString MJCalibration::fgReferenceFile = "mjobs/calibrationref.rc";
186	const TString MJCalibration::fgHiLoCalibFile = "mjobs/hilocalib_df46.root";
187
188	// --------------------------------------------------------------------------
189	//
190	// Default constructor.
191	//
192	// - fExtractor to NULL, fTimeExtractor to NULL, fColor to kNONE,
193	// fDisplay to kNormalDisplay, kRelTimes to kFALSE, kataCheck to kFALSE, kDebug to kFALSE,
194	// kIntensity to kFALSE
195	// - SetUseBlindPixel()
196	// - SetUsePINDiode()
197	//
198	MJCalibration::MJCalibration(const char name, const char title)
199	: fExtractor(NULL), fTimeExtractor(NULL),
200	fColor(MCalibrationCam::kNONE), fDisplayType(kDataCheckDisplay),
201	fGeometry("MGeomCamMagic")
202	{
203
204	fName = name ? name : "MJCalibration";
205	fTitle = title ? title : "Tool to create the calibration constants for one calibration run";
206
207	SetHiLoCalibration();
208	SetRelTimeCalibration();
209	SetDebug(kFALSE);
210	SetIntensity(kFALSE);
211
212	SetReferenceFile();
213	SetHiLoCalibFile();
214
215	fConvFADC2PheMin = 0.;
216	fConvFADC2PheMax = 1.5;
217	fConvFADC2PhotMin = 0.;
218	fConvFADC2PhotMax = 10.;
219	fQEMin = 0.;
220	fQEMax = 0.3;
221	fArrivalTimeMin = 1.;
222	fArrivalTimeMax = 10.;
223	fTimeOffsetMin = -3.;
224	fTimeOffsetMax = 3.;
225	fTimeResolutionMin = 0.;
226	fTimeResolutionMax = 1.;
227
228	fRefFADC2PheInner = 0.14;
229	fRefFADC2PheOuter = 0.4;
230	fRefConvFADC2PheInner = 0.14;
231	fRefConvFADC2PheOuter = 0.52;
232	fRefQEInner = 0.18;
233	fRefQEOuter = 0.12;
234	fRefArrivalTimeInner = 4.5;
235	fRefArrivalTimeOuter = 5.0;
236	fRefArrivalTimeRmsInner = 0.5;
237	fRefArrivalTimeRmsOuter = 0.5;
238	fRefTimeOffsetInner = -0.23;
239	fRefTimeOffsetOuter = 0.39;
240	fRefTimeResolutionInner = 0.153;
241	fRefTimeResolutionOuter = 0.128;
242
243	}
244
245	void MJCalibration::DrawTab(MParList &plist, const char cont, const char name, Option_t *opt)
246	{
247	TObject *obj = plist.FindObject(cont);
248	if (!obj)
249	return;
250
251	fDisplay->AddTab(name);
252	obj->DrawClone(opt);
253	}
254
255	// --------------------------------------------------------------------------
256	//
257	// Display the results in MStatusDisplay:
258	//
259	// - Add "Calibration" to the MStatusDisplay title
260	// - Retrieve the MGeomCam from MParList
261	// - Initialize the following MHCamera's:
262	// 1) MCalibrationPix::GetMean()
263	// 2) MCalibrationPix::Sigma()
264	// 3) MCalibrationChargePix::GetRSigma()
265	// 4) MCalibrationChargePix::GetRSigmaPerCharge()
266	// 5) MCalibrationChargePix::GetPheFFactorMethod()
267	// 6) MCalibrationChargePix::GetMeanConvFADC2Phe()
268	// 7) MCalibrationChargePix::GetMeanFFactorFADC2Phot()
269	// 8) MCalibrationQEPix::GetQECascadesFFactor()
270	// 9) MCalibrationQEPix::GetQECascadesBlindPixel()
271	// 10) MCalibrationQEPix::GetQECascadesPINDiode()
272	// 11) MCalibrationQEPix::GetQECascadesCombined()
273	// 12) MCalibrationQEPix::IsAverageQEFFactorAvailable()
274	// 13) MCalibrationQEPix::IsAverageQEBlindPixelAvailable()
275	// 14) MCalibrationQEPix::IsAverageQEPINDiodeAvailable()
276	// 15) MCalibrationQEPix::IsAverageQECombinedAvailable()
277	// 16) MCalibrationChargePix::IsHiGainSaturation()
278	// 17) MCalibrationPix::GetHiLoMeansDivided()
279	// 18) MCalibrationPix::GetHiLoSigmasDivided()
280	// 19) MCalibrationChargePix::GetHiGainPickup()
281	// 20) MCalibrationChargePix::GetLoGainPickup()
282	// 21) MCalibrationChargePix::GetHiGainBlackout()
283	// 22) MCalibrationChargePix::GetLoGainBlackout()
284	// 23) MCalibrationPix::IsExcluded()
285	// 24) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnsuitableRun)
286	// 25) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnreliableRun)
287	// 26) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kHiGainOscillating)
288	// 27) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kLoGainOscillating)
289	// 28) MCalibrationChargePix::GetAbsTimeMean()
290	// 29) MCalibrationChargePix::GetAbsTimeRms()
291	//
292	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
293	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
294	// and otherwise, (default: SetNormalDisplay()), a good selection of plots is given
295	//
296	void MJCalibration::DisplayResult(MParList &plist)
297	{
298	if (!fDisplay)
299	return;
300
301	TString drawoption = "nonew ";
302	if (fDisplayType == kDataCheckDisplay)
303	drawoption += "datacheck";
304	if (fDisplayType == kFullDisplay)
305	drawoption += "all";
306
307	if (IsUsePINDiode())
308	DrawTab(plist, "MHCalibrationChargePINDiode", "PINDiode", drawoption);
309	if (IsUseBlindPixel())
310	DrawTab(plist, "MHCalibrationChargeBlindCam", "BlindPix", drawoption);
311	if (IsRelTimes())
312	DrawTab(plist, "MHCalibrationRelTimeCam", "Time", drawoption);
313	DrawTab(plist, "MHCalibrationChargeCam", "Charge", drawoption);
314
315	//
316	// Update display
317	//
318	TString title = fDisplay->GetTitle();
319	title += "-- Calibration ";
320	title += Form("calib%08d", fSequence.GetSequence());
321	title += " --";
322	fDisplay->SetTitle(title);
323
324	//
325	// Get container from list
326	//
327	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
328
329	// Create histograms to display
330	MHCamera disp1 (geomcam, "Charge", "Fitted Mean Signal (Charges)");
331	MHCamera disp2 (geomcam, "SigmaCharge", "Sigma of Fitted Signal");
332	MHCamera disp3 (geomcam, "RSigma", "Reduced Sigmas");
333	MHCamera disp4 (geomcam, "RSigmaPerCharge", "Reduced Sigma per Charge");
334	MHCamera disp5 (geomcam, "NumPhes", "Number Photo-electrons");
335	MHCamera disp6 (geomcam, "ConvFADC2Phes", "Phes per Charge (Before Flat-Field)");
336	MHCamera disp7 (geomcam, "TotalFFactor", "Total F-Factor(F-Factor Method)");
337	MHCamera disp8 (geomcam, "CascadesQEFFactor", "Cascades QE (F-Factor Method)");
338	MHCamera disp9 (geomcam, "CascadesQEBlindPix","Cascades QE (Blind Pixel Method)");
339	MHCamera disp10(geomcam, "CascadesQEPINDiode","Cascades QE (PIN Diode Method)");
340	MHCamera disp11(geomcam, "CascadesQECombined","Cascades QE (Combined Method)");
341	MHCamera disp12(geomcam, "FFactorValid", "Pixels with Valid F-Factor Calibration");
342	MHCamera disp13(geomcam, "BlindPixelValid", "Pixels with valid BlindPixel Calibration");
343	MHCamera disp14(geomcam, "PINdiodeValid", "Pixels with Valid PINDiode Calibration");
344	MHCamera disp15(geomcam, "CombinedValid", "Pixels with Valid Combined Calibration");
345	MHCamera disp16(geomcam, "Saturation", "Pixels with Saturated Hi Gain");
346	MHCamera disp17(geomcam, "ConversionMeans", "Conversion HiGain.vs.LoGain Means");
347	MHCamera disp18(geomcam, "ConversionSigmas", "Conversion HiGain.vs.LoGain Sigmas");
348	MHCamera disp19(geomcam, "HiGainPickup", "Number Pickup Events Hi Gain");
349	MHCamera disp20(geomcam, "LoGainPickup", "Number Pickup Events Lo Gain");
350	MHCamera disp21(geomcam, "HiGainBlackout", "Number Blackout Events Hi Gain");
351	MHCamera disp22(geomcam, "LoGainBlackout", "Number Blackout Events Lo Gain");
352	MHCamera disp23(geomcam, "Excluded", "Pixels Previously Excluded");
353	MHCamera disp24(geomcam, "UnSuitable", "Pixels NOT Suited for Further Analysis");
354	MHCamera disp25(geomcam, "UnReliable", "Pixels Suitable, but NOT Reliable for Further Analysis");
355	MHCamera disp26(geomcam, "HiGainOscillating", "Oscillating Pixels High Gain");
356	MHCamera disp27(geomcam, "LoGainOscillating", "Oscillating Pixels Low Gain");
357	MHCamera disp28(geomcam, "AbsTimeMean", "Abs. Arrival Times");
358	MHCamera disp29(geomcam, "AbsTimeRms", "RMS of Arrival Times");
359	MHCamera disp30(geomcam, "MeanTime", "Mean Rel. Arrival Times");
360	MHCamera disp31(geomcam, "SigmaTime", "Sigma Rel. Arrival Times");
361	MHCamera disp32(geomcam, "TimeProb", "Probability of Time Fit");
362	MHCamera disp33(geomcam, "TimeNotFitValid", "Pixels with not valid Fit Results");
363	MHCamera disp34(geomcam, "TimeOscillating", "Oscillating Pixels");
364	MHCamera disp35(geomcam, "TotalConv", "Conversion Factor to Photons");
365	MHCamera disp36(geomcam, "RMSperMean", "Charge histogram RMS per Mean");
366	MHCamera disp37(geomcam, "TotalConvPhe", "Conversion Factor to equiv. Phe's");
367
368	MCalibrationChargeCam *cam = NULL;
369	MCalibrationQECam *qecam = NULL;
370	MCalibrationRelTimeCam *relcam = NULL;
371	MBadPixelsCam *badcam = NULL;
372
373	if (IsIntensity())
374	{
375	cam = (MCalibrationChargeCam*) fIntensCalibCam.GetCam();
376	qecam = (MCalibrationQECam*) fIntensQECam.GetCam();
377	relcam = (MCalibrationRelTimeCam*)fIntensRelTimeCam.GetCam();
378	badcam = (MBadPixelsCam*) fIntensBadCam.GetCam();
379	}
380	else
381	{
382	cam = &fCalibrationCam;
383	qecam = &fQECam;
384	relcam = &fRelTimeCam;
385	badcam = &fBadPixels;
386	}
387
388	// Fitted charge means and sigmas
389	disp1.SetCamContent(*cam, 0);
390	disp1.SetCamError( *cam, 1);
391	disp2.SetCamContent(*cam, 2);
392	disp2.SetCamError( *cam, 3);
393
394	// Reduced Sigmas and reduced sigmas per charge
395	disp3.SetCamContent(*cam, 5);
396	disp3.SetCamError( *cam, 6);
397	disp4.SetCamContent(*cam, 7);
398	disp4.SetCamError( *cam, 8);
399
400	// F-Factor Method
401	disp5.SetCamContent(*cam, 9);
402	disp5.SetCamError( *cam, 10);
403	disp6.SetCamContent(*cam, 11);
404	disp6.SetCamError( *cam, 12);
405	disp7.SetCamContent(*cam, 13);
406	disp7.SetCamError( *cam, 14);
407
408	// Quantum Efficiencies
409	disp8.SetCamContent (*qecam, 0 );
410	disp8.SetCamError (*qecam, 1 );
411	disp9.SetCamContent (*qecam, 2 );
412	disp9.SetCamError (*qecam, 3 );
413	disp10.SetCamContent(*qecam, 4 );
414	disp10.SetCamError (*qecam, 5 );
415	disp11.SetCamContent(*qecam, 6 );
416	disp11.SetCamError (*qecam, 7 );
417
418	// Valid flags
419	disp12.SetCamContent(*qecam, 8 );
420	disp13.SetCamContent(*qecam, 9 );
421	disp14.SetCamContent(*qecam, 10);
422	disp15.SetCamContent(*qecam, 11);
423
424	// Conversion Hi-Lo
425	disp16.SetCamContent(*cam, 25);
426	disp17.SetCamContent(*cam, 16);
427	disp17.SetCamError (*cam, 17);
428	disp18.SetCamContent(*cam, 18);
429	disp18.SetCamError (*cam, 19);
430
431	// Pickup and Blackout
432	disp19.SetCamContent(*cam, 21);
433	disp20.SetCamContent(*cam, 22);
434	disp21.SetCamContent(*cam, 23);
435	disp22.SetCamContent(*cam, 24);
436
437	// Pixels with defects
438	disp23.SetCamContent(*cam, 20);
439	disp24.SetCamContent(*badcam, 6);
440	disp25.SetCamContent(*badcam, 7);
441
442	// Oscillations
443	disp26.SetCamContent(*badcam, 10);
444	disp27.SetCamContent(*badcam, 11);
445
446	// Arrival Times
447	disp28.SetCamContent(*cam, 26);
448	disp28.SetCamError( *cam, 27);
449	disp29.SetCamContent(*cam, 27);
450
451	// RMS and Mean
452	disp36.SetCamContent(*cam,32);
453	disp36.SetCamError(*cam,33);
454
455	disp1.SetYTitle("Q [FADC cnts]");
456	disp2.SetYTitle("\\sigma_{Q} [FADC cnts]");
457
458	disp3.SetYTitle("\\sqrt{\\sigma^{2}_{Q} - RMS^{2}_{Ped}} [FADC cnts]");
459	disp4.SetYTitle("Red.Sigma/<Q> [1]");
460
461	disp5.SetYTitle("Photo-electons [1]");
462	disp6.SetYTitle("Phes/<Q> [FADC cnts^{-1}]");
463	disp7.SetYTitle("Total F-Factor [1]");
464
465	disp8.SetYTitle("QE [1]");
466	disp9.SetYTitle("QE [1]");
467	disp10.SetYTitle("QE [1]");
468	disp11.SetYTitle("QE [1]");
469
470	disp12.SetYTitle("[1]");
471	disp13.SetYTitle("[1]");
472	disp14.SetYTitle("[1]");
473	disp15.SetYTitle("[1]");
474	disp16.SetYTitle("[1]");
475
476	disp17.SetYTitle("<Q>(High)/<Q>(Low) [1]");
477	disp18.SetYTitle("\\sigma_{Q}(High)/\\sigma_{Q}(Low) [1]");
478
479	disp19.SetYTitle("[1]");
480	disp20.SetYTitle("[1]");
481	disp21.SetYTitle("[1]");
482	disp22.SetYTitle("[1]");
483	// disp23.SetYTitle("[1]");
484	// disp24.SetYTitle("[1]");
485	// disp25.SetYTitle("[1]");
486	disp26.SetYTitle("[1]");
487	disp27.SetYTitle("[1]");
488
489	disp28.SetYTitle("Mean Abs. Time [FADC sl.]");
490	disp29.SetYTitle("RMS Abs. Time [FADC sl.]");
491	disp35.SetYTitle("Conv.Factor [Ph/FADC cnts]");
492	disp36.SetYTitle("Charge RMS/<Q> [1]");
493	disp37.SetYTitle("Conv.Factor [Phe/FADC cnts]");
494
495	for (UInt_t i=0;i<geomcam.GetNumPixels();i++)
496	{
497
498	MCalibrationChargePix &pix = (MCalibrationChargePix&)(*cam) [i];
499	MCalibrationQEPix &qe = (MCalibrationQEPix&) (*qecam)[i];
500
501	if (!pix.IsFFactorMethodValid())
502	continue;
503
504	const Float_t convphe = pix.GetMeanConvFADC2Phe();
505	const Float_t quaeff = qe.GetQECascadesFFactor();
506
507	disp35.Fill(i,convphe/quaeff);
508	disp35.SetUsed(i);
509
510	disp37.Fill(i,convphe/quaeff*MCalibrationQEPix::gkDefaultAverageQE);
511	disp37.SetUsed(i);
512	}
513
514
515	if (IsRelTimes())
516	{
517	disp30.SetCamContent(*relcam,0);
518	disp30.SetCamError( *relcam,1);
519	disp31.SetCamContent(*relcam,2);
520	disp31.SetCamError( *relcam,3);
521	disp32.SetCamContent(*relcam,4);
522	disp33.SetCamContent(fBadPixels,20);
523	disp34.SetCamContent(fBadPixels,21);
524
525	disp30.SetYTitle("Time Offset [FADC units]");
526	disp31.SetYTitle("Timing resolution [FADC units]");
527	disp32.SetYTitle("P_{Time} [1]");
528	disp33.SetYTitle("[1]");
529	disp34.SetYTitle("[1]");
530	}
531
532	if (fDisplayType == kDataCheckDisplay)
533	{
534
535	TCanvas &c1 = fDisplay->AddTab("FitCharge");
536	c1.Divide(3, 3);
537
538	//
539	// MEAN CHARGES
540	//
541
542	c1.cd(1);
543	gPad->SetBorderMode(0);
544	gPad->SetTicks();
545	MHCamera obj1=(MHCamera)disp1.DrawCopy("hist");
546	//
547	// for the datacheck, fix the ranges!!
548	//
549	// obj1->SetMinimum(fChargeMin);
550	// obj1->SetMaximum(fChargeMax);
551	//
552	// Set the datacheck sizes:
553	//
554	FixDataCheckHist((TH1D*)obj1);
555	obj1->SetStats(kFALSE);
556	//
557	// set reference lines
558	//
559	// DisplayReferenceLines(obj1,0);
560
561	c1.cd(4);
562	gPad->SetBorderMode(0);
563	obj1->SetPrettyPalette();
564	obj1->Draw();
565
566	c1.cd(7);
567	gPad->SetBorderMode(0);
568	gPad->SetTicks();
569	TH1D obj2 = (TH1D)obj1->Projection(obj1->GetName());
570	obj2->Draw();
571	obj2->SetBit(kCanDelete);
572	obj2->Fit("gaus","Q");
573	TF1 *fun2 = obj2->GetFunction("gaus");
574	fun2->SetLineColor(kYellow);
575	gPad->Modified();
576	gPad->Update();
577	TPaveStats st = (TPaveStats)obj2->GetListOfFunctions()->FindObject("stats");
578	st->SetY1NDC(0.55);
579	st->SetY2NDC(0.89);
580	st->SetX1NDC(0.65);
581	st->SetX2NDC(0.99);
582	gPad->Modified();
583	gPad->Update();
584	//
585	// Set the datacheck sizes:
586	//
587	FixDataCheckHist(obj2);
588	obj2->SetStats(1);
589
590	//
591	// Display the outliers as dead and noisy pixels
592	//
593	DisplayOutliers(obj2,"low-ampl.","high-ampl.");
594	TLatex flattex;
595	flattex.SetTextSize(0.07);
596	const Double_t minl = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
597	const Double_t maxl = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
598	flattex.DrawLatex(minl+0.015*(maxl-minl),obj2->GetBinContent(obj2->GetMaximumBin())/1.35,
599	Form("Flatfield precision: %4.2f%%",
600	fun2->GetParameter(2)/fun2->GetParameter(1)*100.));
601
602	//
603	// RMS per Charge
604	//
605
606	c1.cd(2);
607	gPad->SetBorderMode(0);
608	gPad->SetTicks();
609	MHCamera obj3=(MHCamera)disp36.DrawCopy("hist");
610	//
611	// for the datacheck, fix the ranges!!
612	//
613	// obj3->SetMinimum(0.);
614	// obj3->SetMaximum(fChargeMax);
615	//
616	// Set the datacheck sizes:
617	//
618	FixDataCheckHist((TH1D*)obj3);
619	obj3->SetStats(kFALSE);
620	//
621	// set reference lines
622	//
623	// DisplayReferenceLines(obj3,0);
624
625	c1.cd(5);
626	gPad->SetBorderMode(0);
627	obj3->SetPrettyPalette();
628	obj3->Draw();
629
630	c1.cd(8);
631	gPad->SetBorderMode(0);
632	if (geomcam.InheritsFrom("MGeomCamMagic"))
633	DisplayDoubleProject(&disp36, "dead", "noisy");
634
635	//
636	// PHOTO ELECTRONS
637	//
638
639	c1.cd(3);
640	gPad->SetBorderMode(0);
641	gPad->SetTicks();
642	MHCamera obj4=(MHCamera)disp5.DrawCopy("hist");
643	//
644	// for the datacheck, fix the ranges!!
645	//
646	// obj3->SetMinimum(fChargeMin);
647	// obj3->SetMaximum(fChargeMax);
648	//
649	// Set the datacheck sizes:
650	//
651	FixDataCheckHist((TH1D*)obj4);
652	obj4->SetStats(kFALSE);
653	//
654	// set reference lines
655	//
656	// DisplayReferenceLines(obj3,0);
657
658	c1.cd(6);
659	gPad->SetBorderMode(0);
660	obj4->SetPrettyPalette();
661	obj4->Draw();
662
663	c1.cd(9);
664	gPad->SetBorderMode(0);
665	if (geomcam.InheritsFrom("MGeomCamMagic"))
666	DisplayDoubleProject(&disp5, "dead", "noisy");
667
668	//
669	// CONVERSION FACTORS
670	//
671	TCanvas &c2 = fDisplay->AddTab("Conversion");
672	c2.Divide(3,3);
673
674	c2.cd(1);
675	gPad->SetBorderMode(0);
676	gPad->SetTicks();
677	MHCamera obj5=(MHCamera)disp6.DrawCopy("hist");
678	//
679	// for the datacheck, fix the ranges!!
680	//
681	obj5->SetMinimum(fConvFADC2PheMin);
682	obj5->SetMaximum(fConvFADC2PheMax);
683	//
684	// Set the datacheck sizes:
685	//
686	FixDataCheckHist((TH1D*)obj5);
687	obj5->SetStats(kFALSE);
688	//
689	// set reference lines
690	//
691	DisplayReferenceLines(obj5,2);
692
693	c2.cd(4);
694	gPad->SetBorderMode(0);
695	obj5->SetPrettyPalette();
696	obj5->Draw();
697
698	c2.cd(7);
699	gPad->SetBorderMode(0);
700	if (geomcam.InheritsFrom("MGeomCamMagic"))
701	DisplayDoubleProject(&disp6, "noisy", "dead");
702
703	//
704	// QUANTUM EFFICIENCY
705	//
706	c2.cd(2);
707	gPad->SetBorderMode(0);
708	gPad->SetTicks();
709	MHCamera obj6=(MHCamera)disp8.DrawCopy("hist");
710	//
711	// for the datacheck, fix the ranges!!
712	//
713	obj6->SetMinimum(fQEMin);
714	obj6->SetMaximum(fQEMax);
715	//
716	// Set the datacheck sizes:
717	//
718	FixDataCheckHist((TH1D*)obj6);
719	obj6->SetStats(kFALSE);
720	//
721	// set reference lines
722	//
723	DisplayReferenceLines(obj6,0);
724
725	c2.cd(5);
726	gPad->SetBorderMode(0);
727	obj6->SetPrettyPalette();
728	obj6->Draw();
729
730	c2.cd(8);
731	gPad->SetBorderMode(0);
732	if (geomcam.InheritsFrom("MGeomCamMagic"))
733	DisplayDoubleProject(&disp8, "noisy", "dead");
734
735	//
736	// CONVERSION FADC TO PHOTONS
737	//
738
739	c2.cd(3);
740	gPad->SetBorderMode(0);
741	gPad->SetTicks();
742	MHCamera obj7=(MHCamera)disp37.DrawCopy("hist");
743	//
744	// for the datacheck, fix the ranges!!
745	//
746	obj7->SetMinimum(fConvFADC2PheMin);
747	obj7->SetMaximum(fConvFADC2PheMax);
748	//
749	// Set the datacheck sizes:
750	//
751	FixDataCheckHist((TH1D*)obj7);
752	obj7->SetStats(kFALSE);
753	//
754	// set reference lines
755	//
756	DisplayReferenceLines(obj7,1);
757
758	c2.cd(6);
759	gPad->SetBorderMode(0);
760	obj7->SetPrettyPalette();
761	obj7->Draw();
762	c2.cd(9);
763	gPad->SetBorderMode(0);
764	if (geomcam.InheritsFrom("MGeomCamMagic"))
765	DisplayDoubleProject(&disp37, "noisy", "dead");
766
767	//
768	// ARRIVAL TIMES
769	//
770	TCanvas &c3 = fDisplay->AddTab("AbsTimes");
771	c3.Divide(2,3);
772
773	c3.cd(1);
774	gPad->SetBorderMode(0);
775	gPad->SetTicks();
776	MHCamera obj10=(MHCamera)disp28.DrawCopy("hist");
777	//
778	// for the datacheck, fix the ranges!!
779	//
780	obj10->SetMinimum(fArrivalTimeMin);
781	obj10->SetMaximum(fArrivalTimeMax);
782	//
783	// Set the datacheck sizes:
784	//
785	FixDataCheckHist((TH1D*)obj10);
786	obj10->SetStats(kFALSE);
787	//
788	// set reference lines
789	//
790	DisplayReferenceLines(obj10,3);
791
792	c3.cd(3);
793	gPad->SetBorderMode(0);
794	obj10->SetPrettyPalette();
795	obj10->Draw();
796
797	c3.cd(5);
798	gPad->SetBorderMode(0);
799	if (geomcam.InheritsFrom("MGeomCamMagic"))
800	DisplayDoubleProject(&disp28, "early", "late");
801
802	//
803	// ARRIVAL TIMES JITTER
804	//
805	c3.cd(2);
806	gPad->SetBorderMode(0);
807	gPad->SetTicks();
808	MHCamera obj11=(MHCamera)disp29.DrawCopy("hist");
809	//
810	// for the datacheck, fix the ranges!!
811	//
812	// obj11->SetMinimum(fArrivalTimeMin);
813	// obj11->SetMaximum(fArrivalTimeMax);
814	//
815	// Set the datacheck sizes:
816	//
817	FixDataCheckHist((TH1D*)obj11);
818	obj11->SetStats(kFALSE);
819	//
820	// set reference lines
821	//
822	DisplayReferenceLines(obj11,4);
823
824	c3.cd(4);
825	gPad->SetBorderMode(0);
826	obj11->SetPrettyPalette();
827	obj11->Draw();
828
829	c3.cd(6);
830	gPad->SetBorderMode(0);
831	if (geomcam.InheritsFrom("MGeomCamMagic"))
832	DisplayDoubleProject(&disp29, "", "jittering");
833
834	//
835	// UNSUITABLE PIXELS
836	//
837	TCanvas &c4 = fDisplay->AddTab("Defect");
838	c4.Divide(2,2, 0.005, 0.005);
839
840	c4.cd(1);
841	gPad->SetBorderMode(0);
842	gPad->SetTicks();
843	MHCamera obj8=(MHCamera)disp24.DrawCopy("hist");
844	//
845	// for the datacheck, fix the ranges!!
846	//
847	const Double_t max = 11.;
848	obj8->SetMinimum(0.);
849	obj8->SetMaximum(max);
850	//
851	// Set the datacheck sizes:
852	//
853	FixDataCheckHist((TH1D*)obj8);
854	obj8->SetStats(kFALSE);
855
856	gStyle->SetPalette(1);
857	const Int_t numcol = gStyle->GetNumberOfColors()-3;
858
859	TPaveText *pave = new TPaveText(0.05,0.02,0.975,0.99);
860	pave->SetBit(kCanDelete);
861	pave->ConvertNDCtoPad();
862	pave->SetTextSize(0.045);
863	pave->AddText(" ");
864	TText *t1 = pave->AddText(Form("Signal smaller 4.5 Pedestal RMS: %3i pixels",
865	CountBadPixels(&disp24,1)));
866	t1->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol)));
867	t1->SetTextAlign(12);
868	TText *t4 = pave->AddText(Form("Low Gain Saturation: %3i pixels",
869	CountBadPixels(&disp24,2)));
870	t4->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol)));
871	t4->SetTextAlign(12);
872	TText *t5 = pave->AddText(Form("Mean Arr. Time In First Extraction Bin: %3i pixels",
873	CountBadPixels(&disp24,3)));
874	t5->SetTextColor(gStyle->GetColorPalette(Int_t(3./max*numcol)));
875	t5->SetTextAlign(12);
876	TText *t6 = pave->AddText(Form("Mean Arr. Time In Last 2 Extraction Bins: %3i pixels",
877	CountBadPixels(&disp24,4)));
878	t6->SetTextColor(gStyle->GetColorPalette(Int_t(4./max*numcol)));
879	t6->SetTextAlign(12);
880	TText *t10= pave->AddText(Form("High-Gain Histogram Overflow: %3i pixels",
881	CountBadPixels(&disp24,5 )));
882	t10->SetTextColor(gStyle->GetColorPalette(Int_t(5./max*numcol)));
883	t10->SetTextAlign(12);
884	TText *t11= pave->AddText(Form("Low-Gain Histogram Overflow: %3i pixels",
885	CountBadPixels(&disp24,6 )));
886	t11->SetTextColor(gStyle->GetColorPalette(Int_t(6./max*numcol)));
887	t11->SetTextAlign(12);
888	TText *t12= pave->AddText(Form("Presumably dead from Ped. Rms: %3i pixels",
889	CountBadPixels(&disp24,7 )));
890	t12->SetTextColor(gStyle->GetColorPalette(Int_t(7./max*numcol)));
891	t12->SetTextAlign(12);
892	TText *t13= pave->AddText(Form("Fluctuating Pulse Arrival Times: %3i pixels",
893	CountBadPixels(&disp24,8 )));
894	t13->SetTextColor(gStyle->GetColorPalette(Int_t(8./max*numcol)));
895	t13->SetTextAlign(12);
896	TText *t17 = pave->AddText(Form("Deviating Number of Photo-electrons: %3i pixels",
897	CountBadPixels(&disp24,9 )));
898	t17->SetTextColor(gStyle->GetColorPalette(Int_t(9./max*numcol)));
899	t17->SetTextAlign(12);
900	TText *t15= pave->AddText(Form("Too many Low-Gain Blackout Events: %3i pixels",
901	CountBadPixels(&disp24,10 )));
902	t15->SetTextColor(gStyle->GetColorPalette(Int_t(10./max*numcol)));
903	t15->SetTextAlign(12);
904	TText *t14= pave->AddText(Form("Previously Excluded: %3i pixels",
905	CountBadPixels(&disp24,11)));
906	t14->SetTextColor(gStyle->GetColorPalette(Int_t(11./max*numcol)));
907	t14->SetTextAlign(12);
908	pave->Draw();
909
910	c4.cd(3);
911	gPad->SetBorderMode(0);
912	obj8->Draw();
913	obj8->SetPrettyPalette();
914
915	//
916	// UNRELIABLE PIXELS
917	//
918
919	c4.cd(2);
920	gPad->SetBorderMode(0);
921	gPad->SetTicks();
922	MHCamera obj9=(MHCamera)disp25.DrawCopy("hist");
923	//
924	// for the datacheck, fix the ranges!!
925	//
926	const Double_t max2 = 9.;
927	obj9->SetMinimum(0.);
928	obj9->SetMaximum(max2);
929	//
930	// Set the datacheck sizes:
931	//
932	FixDataCheckHist((TH1D*)obj9);
933	obj9->SetStats(kFALSE);
934
935	gStyle->SetPalette(1);
936
937	TPaveText *pave2 = new TPaveText(0.025,0.02,0.95,0.99);
938	pave2->SetBit(kCanDelete);
939	pave2->ConvertNDCtoPad();
940	pave2->SetTextSize(0.05);
941	pave2->AddText(" ");
942	TText *t3 = pave2->AddText(Form("Signal Sigma smaller Pedestal RMS: %3i pixels",
943	CountBadPixels(&disp25,1)));
944	t3->SetTextColor(gStyle->GetColorPalette(Int_t(1./max2*numcol)));
945	t3->SetTextAlign(12);
946	TText *tt1 = pave2->AddText(Form("High Gain Signals could not be fitted: %3i pixels",
947	CountBadPixels(&disp25,3)));
948	tt1->SetTextColor(gStyle->GetColorPalette(Int_t(3./max2*numcol)));
949	tt1->SetTextAlign(12);
950	TText *tt2 = pave2->AddText(Form("Low Gain Signals could not be fitted: %3i pixels",
951	CountBadPixels(&disp25,4)));
952	tt2->SetTextColor(gStyle->GetColorPalette(Int_t(4./max2*numcol)));
953	tt2->SetTextAlign(12);
954	TText *tt3 = pave2->AddText(Form("Relative Arr. Times could not be fitted: %3i pixels",
955	CountBadPixels(&disp25,5)));
956	tt3->SetTextColor(gStyle->GetColorPalette(Int_t(5./max2*numcol)));
957	tt3->SetTextAlign(12);
958	TText *tt4 = pave2->AddText(Form("High Gain Signals Oscillation: %3i pixels",
959	CountBadPixels(&disp25,6)));
960	tt4->SetTextColor(gStyle->GetColorPalette(Int_t(6./max2*numcol)));
961	tt4->SetTextAlign(12);
962	TText *tt5 = pave2->AddText(Form("Low Gain Signals Oscillation: %3i pixels",
963	CountBadPixels(&disp25,7)));
964	tt5->SetTextColor(gStyle->GetColorPalette(Int_t(7./max2*numcol)));
965	tt5->SetTextAlign(12);
966	TText *tt6 = pave2->AddText(Form("Relative Arr. Times Oscillation: %3i pixels",
967	CountBadPixels(&disp25,8)));
968	tt6->SetTextColor(gStyle->GetColorPalette(Int_t(8./max2*numcol)));
969	tt6->SetTextAlign(12);
970	TText *tt8 = pave2->AddText(Form("Deviating global F-Factor: %3i pixels",
971	CountBadPixels(&disp25,9)));
972	tt8->SetTextColor(gStyle->GetColorPalette(Int_t(9./max2*numcol)));
973	tt8->SetTextAlign(12);
974	pave2->Draw();
975
976	c4.cd(4);
977	gPad->SetBorderMode(0);
978	obj9->SetPrettyPalette();
979	obj9->Draw();
980
981	if (IsRelTimes())
982	{
983	TCanvas &c5 = fDisplay->AddTab("RelTimes");
984	c5.Divide(2,3);
985
986	//
987	// MEAN REL. ARR. TIMES
988	//
989	c5.cd(1);
990	gPad->SetBorderMode(0);
991	gPad->SetTicks();
992	MHCamera obj10=(MHCamera)disp30.DrawCopy("hist");
993	//
994	// for the datacheck, fix the ranges!!
995	//
996	obj10->SetMinimum(fTimeOffsetMin);
997	obj10->SetMaximum(fTimeOffsetMax);
998	//
999	// Set the datacheck sizes:
1000	//
1001	FixDataCheckHist((TH1D*)obj10);
1002	obj10->SetStats(kFALSE);
1003	//
1004	// set reference lines
1005	//
1006	DisplayReferenceLines(obj10,5);
1007
1008	c5.cd(3);
1009	gPad->SetBorderMode(0);
1010	obj10->SetPrettyPalette();
1011	obj10->Draw();
1012
1013	c5.cd(5);
1014	gPad->SetBorderMode(0);
1015	if (geomcam.InheritsFrom("MGeomCamMagic"))
1016	DisplayDoubleProject(&disp30, "early", "late");
1017
1018	//
1019	// JITTER Rel. Arr. Times
1020	//
1021	c5.cd(2);
1022	gPad->SetBorderMode(0);
1023	gPad->SetTicks();
1024	MHCamera obj11=(MHCamera)disp31.DrawCopy("hist");
1025	//
1026	// for the datacheck, fix the ranges!!
1027	//
1028	obj11->SetMinimum(fTimeResolutionMin);
1029	obj11->SetMaximum(fTimeResolutionMax);
1030	//
1031	// Set the datacheck sizes:
1032	//
1033	FixDataCheckHist((TH1D*)obj11);
1034	obj11->SetStats(kFALSE);
1035	//
1036	// set reference lines
1037	//
1038	DisplayReferenceLines(obj11,6);
1039
1040	c5.cd(4);
1041	gPad->SetBorderMode(0);
1042	obj11->SetPrettyPalette();
1043	obj11->Draw();
1044
1045	c5.cd(6);
1046	gPad->SetBorderMode(0);
1047	if (geomcam.InheritsFrom("MGeomCamMagic"))
1048	DisplayDoubleProject(&disp31, "too stable", "jittering");
1049
1050	}
1051	return;
1052	}
1053
1054	if (fDisplayType == kNormalDisplay)
1055	{
1056
1057	// Charges
1058	TCanvas &c11 = fDisplay->AddTab("FitCharge");
1059	c11.Divide(2, 4);
1060
1061	disp1.CamDraw(c11, 1, 2, 5, 1);
1062	disp2.CamDraw(c11, 2, 2, 5, 1);
1063
1064	// Reduced Sigmas
1065	TCanvas &c12 = fDisplay->AddTab("RedSigma");
1066	c12.Divide(2,4);
1067
1068	disp3.CamDraw(c12, 1, 2, 5, 1);
1069	disp4.CamDraw(c12, 2, 2, 5, 1);
1070
1071	// F-Factor
1072	TCanvas &c13 = fDisplay->AddTab("Phe's");
1073	c13.Divide(3,4);
1074
1075	disp5.CamDraw(c13, 1, 3, 5, 1);
1076	disp6.CamDraw(c13, 2, 3, 5, 1);
1077	disp7.CamDraw(c13, 3, 3, 5, 1);
1078
1079	// QE's
1080	TCanvas &c14 = fDisplay->AddTab("QE's");
1081	c14.Divide(4,4);
1082
1083	disp8.CamDraw(c14, 1, 4, 5, 1);
1084	disp9.CamDraw(c14, 2, 4, 5, 1);
1085	disp10.CamDraw(c14, 3, 4, 5, 1);
1086	disp11.CamDraw(c14, 4, 4, 5, 1);
1087
1088	// Defects
1089	TCanvas &c15 = fDisplay->AddTab("Defect");
1090	// c15.Divide(5,2);
1091	c15.Divide(4,2);
1092
1093	/*
1094	disp23.CamDraw(c15, 1, 5, 0);
1095	disp24.CamDraw(c15, 2, 5, 0);
1096	disp25.CamDraw(c15, 3, 5, 0);
1097	disp26.CamDraw(c15, 4, 5, 0);
1098	disp27.CamDraw(c15, 5, 5, 0);
1099	*/
1100	disp24.CamDraw(c15, 1, 4, 0);
1101	disp25.CamDraw(c15, 2, 4, 0);
1102	disp26.CamDraw(c15, 3, 4, 0);
1103	disp27.CamDraw(c15, 4, 4, 0);
1104
1105	// Abs. Times
1106	TCanvas &c16 = fDisplay->AddTab("AbsTimes");
1107	c16.Divide(2,3);
1108
1109	disp28.CamDraw(c16, 1, 2, 5);
1110	disp29.CamDraw(c16, 2, 2, 5);
1111
1112	if (IsRelTimes())
1113	{
1114	// Rel. Times
1115	TCanvas &c17 = fDisplay->AddTab("RelTimes");
1116	c17.Divide(2,4);
1117
1118	disp30.CamDraw(c17, 1, 2, 5, 1);
1119	disp31.CamDraw(c17, 2, 2, 5, 1);
1120	}
1121
1122	return;
1123	}
1124
1125	if (fDisplayType == kFullDisplay)
1126	{
1127	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationChargeCam");
1128
1129	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1130	{
1131	cam->GetAverageHiGainSector(sector).DrawClone("all");
1132	cam->GetAverageLoGainSector(sector).DrawClone("all");
1133	}
1134
1135	// Charges
1136	TCanvas &c21 = fDisplay->AddTab("FitCharge");
1137	c21.Divide(2, 4);
1138
1139	disp1.CamDraw(c21, 1, 2, 2, 1);
1140	disp2.CamDraw(c21, 2, 2, 2, 1);
1141
1142	// Reduced Sigmas
1143	TCanvas &c23 = fDisplay->AddTab("RedSigma");
1144	c23.Divide(2,4);
1145
1146	disp3.CamDraw(c23, 1, 2, 2, 1);
1147	disp4.CamDraw(c23, 2, 2, 2, 1);
1148
1149	// F-Factor
1150	TCanvas &c24 = fDisplay->AddTab("Phe's");
1151	c24.Divide(3,5);
1152
1153	disp5.CamDraw(c24, 1, 3, 2, 1, 1);
1154	disp6.CamDraw(c24, 2, 3, 2, 1, 1);
1155	disp7.CamDraw(c24, 3, 3, 2, 1, 1);
1156
1157	// QE's
1158	TCanvas &c25 = fDisplay->AddTab("QE's");
1159	c25.Divide(4,5);
1160
1161	disp8.CamDraw(c25, 1, 4, 2, 1, 1);
1162	disp9.CamDraw(c25, 2, 4, 2, 1, 1);
1163	disp10.CamDraw(c25, 3, 4, 2, 1, 1);
1164	disp11.CamDraw(c25, 4, 4, 2, 1, 1);
1165
1166	// Validity
1167	TCanvas &c26 = fDisplay->AddTab("Valid");
1168	c26.Divide(4,2);
1169
1170	disp12.CamDraw(c26, 1, 4, 0);
1171	disp13.CamDraw(c26, 2, 4, 0);
1172	disp14.CamDraw(c26, 3, 4, 0);
1173	disp15.CamDraw(c26, 4, 4, 0);
1174
1175	// Other info
1176	TCanvas &c27 = fDisplay->AddTab("HiLoGain");
1177	c27.Divide(3,3);
1178
1179	disp16.CamDraw(c27, 1, 3, 0);
1180	disp17.CamDraw(c27, 2, 3, 1);
1181	disp18.CamDraw(c27, 3, 3, 1);
1182
1183	// Pickup
1184	TCanvas &c28 = fDisplay->AddTab("Pickup");
1185	c28.Divide(4,2);
1186
1187	disp19.CamDraw(c28, 1, 4, 0);
1188	disp20.CamDraw(c28, 2, 4, 0);
1189	disp21.CamDraw(c28, 3, 4, 0);
1190	disp22.CamDraw(c28, 4, 4, 0);
1191
1192	// Defects
1193	TCanvas &c29 = fDisplay->AddTab("Defect");
1194	// c29.Divide(5,2);
1195	c29.Divide(4,2);
1196
1197	disp24.CamDraw(c29, 1, 4, 0);
1198	disp25.CamDraw(c29, 2, 4, 0);
1199	disp26.CamDraw(c29, 3, 4, 0);
1200	disp27.CamDraw(c29, 4, 4, 0);
1201
1202	// Abs. Times
1203	TCanvas &c30 = fDisplay->AddTab("AbsTimes");
1204	c30.Divide(2,3);
1205
1206	disp28.CamDraw(c30, 1, 2, 2);
1207	disp29.CamDraw(c30, 2, 2, 1);
1208
1209	if (IsRelTimes())
1210	{
1211	// Rel. Times
1212	TCanvas &c31 = fDisplay->AddTab("RelTimes");
1213	c31.Divide(3,5);
1214
1215	disp30.CamDraw(c31, 1, 3, 2, 1, 1);
1216	disp31.CamDraw(c31, 2, 3, 2, 1, 1);
1217	disp32.CamDraw(c31, 3, 3, 4, 1, 1);
1218
1219	// Time Defects
1220	TCanvas &c32 = fDisplay->AddTab("DefTime");
1221	c32.Divide(2,2);
1222
1223	disp33.CamDraw(c32, 1, 2, 0);
1224	disp34.CamDraw(c32, 2, 2, 0);
1225
1226	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationRelTimeCam");
1227
1228	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1229	{
1230	cam->GetAverageHiGainSector(sector).DrawClone("fourierevents");
1231	cam->GetAverageLoGainSector(sector).DrawClone("fourierevents");
1232	}
1233
1234	}
1235
1236	return;
1237	}
1238	}
1239
1240
1241	void MJCalibration::DisplayReferenceLines(MHCamera *cam, const Int_t what) const
1242	{
1243
1244	const MGeomCam *geom = cam->GetGeometry();
1245
1246	Double_t x = geom->InheritsFrom("MGeomCamMagic") ? 397 : cam->GetNbinsX() ;
1247
1248	TLine line;
1249	line.SetLineStyle(kDashed);
1250	line.SetLineWidth(3);
1251	line.SetLineColor(kBlue);
1252
1253	TLine *l1 = NULL;
1254
1255	switch (what)
1256	{
1257	case 0:
1258	l1 = line.DrawLine(0, fRefQEInner, x, fRefQEInner);
1259	break;
1260	case 1:
1261	l1 = line.DrawLine(0, fRefConvFADC2PheInner, x, fRefConvFADC2PheInner);
1262	break;
1263	case 2:
1264	l1 = line.DrawLine(0, fRefFADC2PheInner, x, fRefFADC2PheInner );
1265	break;
1266	case 3:
1267	l1 = line.DrawLine(0, fRefArrivalTimeInner, x, fRefArrivalTimeInner );
1268	break;
1269	case 4:
1270	l1 = line.DrawLine(0, fRefArrivalTimeRmsInner, x, fRefArrivalTimeRmsInner );
1271	break;
1272	case 5:
1273	l1 = line.DrawLine(0, fRefTimeOffsetInner, x, fRefTimeOffsetInner );
1274	break;
1275	case 6:
1276	l1 = line.DrawLine(0, fRefTimeResolutionInner, x, fRefTimeResolutionInner );
1277	break;
1278	default:
1279	break;
1280	}
1281
1282	if (geom->InheritsFrom("MGeomCamMagic"))
1283	{
1284	const Double_t x2 = cam->GetNbinsX();
1285
1286	switch (what)
1287	{
1288	case 0:
1289	line.DrawLine(x2, fRefQEOuter, 398, fRefQEOuter);
1290	break;
1291	case 1:
1292	line.DrawLine(x2, fRefConvFADC2PheOuter, 398, fRefConvFADC2PheOuter );
1293	break;
1294	case 2:
1295	line.DrawLine(x2, fRefFADC2PheOuter, 398, fRefFADC2PheOuter);
1296	break;
1297	case 3:
1298	line.DrawLine(x2, fRefArrivalTimeOuter, 398, fRefArrivalTimeOuter);
1299	break;
1300	case 4:
1301	line.DrawLine(x2, fRefArrivalTimeRmsOuter, 398, fRefArrivalTimeRmsOuter);
1302	break;
1303	case 5:
1304	line.DrawLine(x2, fRefTimeOffsetOuter, 398, fRefTimeOffsetOuter);
1305	break;
1306	case 6:
1307	line.DrawLine(x2, fRefTimeResolutionOuter, 398, fRefTimeResolutionOuter);
1308	break;
1309	default:
1310	break;
1311	}
1312	}
1313
1314	TLegend *leg = new TLegend(0.6,0.85,0.9 ,0.95);
1315	leg->SetBit(kCanDelete);
1316	leg->AddEntry(l1, "Reference","l");
1317	leg->Draw();
1318	}
1319
1320	void MJCalibration::DisplayOutliers(TH1D hist, const char whatsmall, const char* whatbig) const
1321	{
1322
1323	const Int_t kNotDraw = 1<<9;
1324	TF1 *f = hist->GetFunction("gaus");
1325	f->ResetBit(kNotDraw);
1326
1327	const Float_t mean = f->GetParameter(1);
1328	const Float_t lolim = mean - 4.0*f->GetParameter(2);
1329	const Float_t uplim = mean + 4.0*f->GetParameter(2);
1330	const Stat_t dead = hist->Integral(0,hist->FindBin(lolim)-1);
1331	const Stat_t noisy = hist->Integral(hist->FindBin(uplim)+1,hist->GetNbinsX()+1);
1332
1333	const Double_t max = hist->GetBinContent(hist->GetMaximumBin());
1334
1335	const Double_t minl = hist->GetBinCenter(hist->GetXaxis()->GetFirst());
1336	const Double_t maxl = hist->GetBinCenter(hist->GetXaxis()->GetLast());
1337
1338	TLatex deadtex;
1339	deadtex.SetTextSize(0.07);
1340	deadtex.DrawLatex(minl+0.015*(maxl-minl),max/1.1,
1341	Form("%3i %s pixels",(Int_t)dead,whatsmall));
1342
1343	TLatex noisytex;
1344	noisytex.SetTextSize(0.07);
1345	noisytex.DrawLatex(minl+0.015*(maxl-minl),max/1.2,
1346	Form("%3i %s pixels",(Int_t)noisy,whatbig));
1347
1348	}
1349
1350	void MJCalibration::FixDataCheckHist(TH1D *hist) const
1351	{
1352
1353	hist->SetDirectory(NULL);
1354
1355	//
1356	// set the labels bigger
1357	//
1358	TAxis *xaxe = hist->GetXaxis();
1359	TAxis *yaxe = hist->GetYaxis();
1360
1361	xaxe->CenterTitle();
1362	yaxe->CenterTitle();
1363	xaxe->SetTitleSize(0.06);
1364	yaxe->SetTitleSize(0.06);
1365	xaxe->SetTitleOffset(0.8);
1366	yaxe->SetTitleOffset(0.85);
1367	xaxe->SetLabelSize(0.05);
1368	yaxe->SetLabelSize(0.05);
1369
1370	}
1371
1372	const Int_t MJCalibration::CountBadPixels(MHCamera *cam, const Int_t what) const
1373	{
1374	Int_t cnt = 0;
1375
1376	for (UInt_t pix=0; pix<cam->GetNumPixels(); pix++)
1377	if (TMath::Nint(cam->GetPixContent(pix)) == what)
1378	cnt++;
1379
1380	return cnt;
1381	}
1382
1383	// --------------------------------------------------------------------------
1384	//
1385	// Retrieve the output file written by WriteResult()
1386	//
1387	const char* MJCalibration::GetOutputFileName() const
1388	{
1389	return Form("calib%08d.root", fSequence.GetSequence());
1390	}
1391
1392	// --------------------------------------------------------------------------
1393	//
1394	// Read the following values from resource file:
1395	//
1396	// ConvFADC2PheMin
1397	// ConvFADC2PheMax
1398	// ConvFADC2PhotMin
1399	// ConvFADC2PhotMax
1400	//
1401	// QEMin
1402	// QEMax
1403	//
1404	// ArrivalTimeMin
1405	// ArrivalTimeMax
1406	//
1407	// TimeOffsetMin
1408	// TimeOffsetMax
1409	// TimeResolutionMin
1410	// TimeResolutionMax
1411	//
1412	// RefConvFADC2PheInner
1413	// RefConvFADC2PheOuter
1414	// RefConvFADC2PhotInner
1415	// RefConvFADC2PhotOuter
1416	//
1417	// RefQEInner
1418	// RefQEOuter
1419	//
1420	// RefArrivalTimeInner
1421	// RefArrivalTimeOuter
1422	// RefArrivalTimeRmsInner
1423	// RefArrivalTimeRmsOuter
1424	//
1425	// RefTimeOffsetInner
1426	// RefTimeOffsetOuter
1427	// RefTimeResolutionInner
1428	// RefTimeResolutionOuter
1429	//
1430	void MJCalibration::ReadReferenceFile()
1431	{
1432	TEnv refenv(fReferenceFile);
1433
1434	fConvFADC2PheMin = refenv.GetValue("ConvFADC2PheMin",fConvFADC2PheMin);
1435	fConvFADC2PheMax = refenv.GetValue("ConvFADC2PheMax",fConvFADC2PheMax);
1436	fConvFADC2PhotMin = refenv.GetValue("ConvFADC2PhotMin",fConvFADC2PhotMin);
1437	fConvFADC2PhotMax = refenv.GetValue("ConvFADC2PhotMax",fConvFADC2PhotMax);
1438	fQEMin = refenv.GetValue("QEMin",fQEMin);
1439	fQEMax = refenv.GetValue("QEMax",fQEMax);
1440	fArrivalTimeMin = refenv.GetValue("ArrivalTimeMin",fArrivalTimeMin);
1441	fArrivalTimeMax = refenv.GetValue("ArrivalTimeMax",fArrivalTimeMax);
1442	fTimeOffsetMin = refenv.GetValue("TimeOffsetMin",fTimeOffsetMin);
1443	fTimeOffsetMax = refenv.GetValue("TimeOffsetMax",fTimeOffsetMax);
1444	fTimeResolutionMin = refenv.GetValue("TimeResolutionMin",fTimeResolutionMin);
1445	fTimeResolutionMax = refenv.GetValue("TimeResolutionMax",fTimeResolutionMax);
1446
1447	fRefFADC2PheInner = refenv.GetValue("RefFADC2PheInner",fRefFADC2PheInner);
1448	fRefFADC2PheOuter = refenv.GetValue("RefFADC2PheOuter",fRefFADC2PheOuter);
1449	fRefConvFADC2PhotInner = refenv.GetValue("RefConvFADC2PhotInner",fRefConvFADC2PhotInner);
1450	fRefConvFADC2PhotOuter = refenv.GetValue("RefConvFADC2PhotOuter",fRefConvFADC2PhotOuter);
1451	fRefConvFADC2PheInner = refenv.GetValue("RefConvFADC2PheInner",fRefConvFADC2PheInner);
1452	fRefConvFADC2PheOuter = refenv.GetValue("RefConvFADC2PheOuter",fRefConvFADC2PheOuter);
1453	fRefQEInner = refenv.GetValue("RefQEInner",fRefQEInner);
1454	fRefQEOuter = refenv.GetValue("RefQEOuter",fRefQEOuter);
1455	fRefArrivalTimeInner = refenv.GetValue("RefArrivalTimeInner",fRefArrivalTimeInner);
1456	fRefArrivalTimeOuter = refenv.GetValue("RefArrivalTimeOuter",fRefArrivalTimeOuter);
1457	fRefArrivalTimeRmsInner = refenv.GetValue("RefArrivalTimeRmsInner",fRefArrivalTimeRmsInner);
1458	fRefArrivalTimeRmsOuter = refenv.GetValue("RefArrivalTimeRmsOuter",fRefArrivalTimeRmsOuter);
1459	fRefTimeOffsetInner = refenv.GetValue("RefTimeOffsetInner",fRefTimeOffsetInner);
1460	fRefTimeOffsetOuter = refenv.GetValue("RefTimeOffsetOuter",fRefTimeOffsetOuter);
1461	fRefTimeResolutionInner = refenv.GetValue("RefTimeResolutionInner",fRefTimeResolutionInner);
1462	fRefTimeResolutionOuter = refenv.GetValue("RefTimeResolutionOuter",fRefTimeResolutionOuter);
1463	}
1464
1465	// --------------------------------------------------------------------------
1466	//
1467	// Read the following values from resource file:
1468	//
1469	// MCalibrationHiLoCam
1470	//
1471	Bool_t MJCalibration::ReadHiLoCalibFile()
1472	{
1473
1474	if (!fIsHiLoCalibration)
1475	return kTRUE;
1476
1477	TFile file(fHiLoCalibFile,"READ");
1478	if (!file.IsOpen())
1479	{
1480	*fLog << err << "ERROR - Couldn't open file " << fHiLoCalibFile << " for reading... abort." << endl;
1481	return kFALSE;
1482	}
1483
1484	MCalibrationHiLoCam hilocam;
1485	if (hilocam.Read()<=0)
1486	{
1487	*fLog << err << "Unable to read MCalibrationHiLoCam from " << fHiLoCalibFile << "... abort." << endl;
1488	return kFALSE;
1489	}
1490	if (hilocam.GetSize() < 1)
1491	{
1492	*fLog << err << "MCalibationHiLoCam is un-initialized in file " << fHiLoCalibFile << "... abort." << endl;
1493	return kFALSE;
1494	}
1495
1496	*fLog << all << "Hi-/Lo-Gain intercalibration constants read from " << fHiLoCalibFile << endl << endl;
1497
1498	if (fCalibrationCam.GetSize() < 1)
1499	fCalibrationCam.InitSize(hilocam.GetSize());
1500
1501	if (fBadPixels.GetSize() < 1)
1502	fBadPixels.InitSize(hilocam.GetSize());
1503
1504	if (fCalibrationCam.GetSize() != hilocam.GetSize())
1505	{
1506	*fLog << err << "Size mismatch MCalibationHiLoCam and MCalibrationChargeCam.. abort." << endl;
1507	return kFALSE;
1508	}
1509
1510	for (Int_t i=0;i<hilocam.GetSize();i++)
1511	{
1512	const MCalibrationHiLoPix &pix = (MCalibrationHiLoPix&)hilocam[i];
1513
1514	const Float_t ratio = pix.GetHiLoChargeRatio();
1515	const Float_t raterr = pix.GetHiLoChargeRatioErr();
1516	const Float_t sigma = pix.GetHiLoChargeRatioSigma();
1517
1518	if (ratio < 0.)
1519	{
1520	fBadPixels[i].SetUncalibrated(MBadPixelsPix::kConversionHiLoNotValid);
1521	continue;
1522	}
1523
1524	MCalibrationChargePix &cpix = (MCalibrationChargePix&)fCalibrationCam[i];
1525
1526	cpix.SetConversionHiLo(ratio);
1527	cpix.SetConversionHiLoErr(raterr);
1528	cpix.SetConversionHiLoSigma(sigma);
1529	}
1530
1531	return kTRUE;
1532	}
1533
1534	// --------------------------------------------------------------------------
1535	//
1536	// MJCalibration allows to setup several option by a resource file:
1537	// MJCalibration.Display: full, datacheck, normal
1538	// MJCalibration.RelTimeCalibration: yes,no
1539	// MJCalibration.DataCheck: yes,no
1540	// MJCalibration.Debug: yes,no
1541	// MJCalibration.Intensity: yes,no
1542	// MJCalibration.UseBlindPixel: yes,no
1543	// MJCalibration.UsePINDiode: yes,no
1544	// MJCalibration.Geometry: MGeomCamMagic, MGeomCamECO1000
1545	//
1546	// Name of a file containing reference values (see ReadReferenceFile)
1547	// Prefix.ReferenceFile: filename
1548	// (see ReadReferenceFile)
1549	//
1550	// For more details see the class description and the corresponding Getters
1551	//
1552	Bool_t MJCalibration::CheckEnvLocal()
1553	{
1554	TString dis = GetEnv("Display", "");
1555	if (dis.BeginsWith("Full", TString::kIgnoreCase))
1556	SetFullDisplay();
1557	if (dis.BeginsWith("DataCheck", TString::kIgnoreCase))
1558	SetDataCheckDisplay();
1559	if (dis.BeginsWith("Normal", TString::kIgnoreCase))
1560	SetNormalDisplay();
1561
1562	if (!MJCalib::CheckEnvLocal())
1563	return kFALSE;
1564
1565	SetRelTimeCalibration(GetEnv("RelTimeCalibration", IsRelTimes()));
1566	SetIntensity(GetEnv("IntensityCalibration", IsIntensity()));
1567	SetDebug(GetEnv("Debug", IsDebug()));
1568
1569	SetUseBlindPixel(GetEnv("UseBlindPixel", IsUseBlindPixel()));
1570	SetUsePINDiode(GetEnv("UsePINDiode", IsUsePINDiode()));
1571	SetGeometry(GetEnv("Geometry", fGeometry));
1572
1573	fReferenceFile = GetEnv("ReferenceFile",fReferenceFile.Data());
1574	ReadReferenceFile();
1575
1576	fHiLoCalibFile = GetEnv("HiLoCalibFile",fHiLoCalibFile.Data());
1577
1578	if (IsUseMC() && !fHiLoCalibFile.EndsWith("_mc.root"))
1579	{
1580	if (!fHiLoCalibFile.EndsWith(".root"))
1581	{
1582	*fLog << warn << "WARNING - Hi-/Lo-Gain intercalibration file ";
1583	*fLog << fHiLoCalibFile << " has not .root as extension..." << endl;
1584	}
1585	else
1586	fHiLoCalibFile.Insert(fHiLoCalibFile.Length()-5, "_mc");
1587	}
1588
1589	return ReadHiLoCalibFile();
1590	}
1591
1592	void MJCalibration::InitBlindPixel(MExtractBlindPixel &blindext,
1593	MHCalibrationChargeBlindCam &blindcam)
1594	{
1595
1596	Int_t run = fSequence.GetLastRun();
1597
1598	//
1599	// Initialize the blind pixel. Unfortunately, there is a hardware difference
1600	// in the first blind pixel until run "gkSecondBlindPixelInstallation" and the
1601	// later setup. The first needs to use a filter because of the length of
1602	// spurious NSB photon signals. The latter get better along extracting the amplitude
1603	// from a small window.
1604	//
1605	if (run < gkSecondBlindPixelInstallation)
1606	{
1607	MCalibrationBlindCamOneOldStyle blindresults;
1608	if (IsIntensity())
1609	blindresults.Copy(*fIntensBlindCam.GetCam());
1610	else
1611	blindresults.Copy(fCalibrationBlindCam);
1612
1613	blindext.SetExtractionType(MExtractBlindPixel::kIntegral);
1614	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1615	blindext.SetRange(10,19,0,6);
1616	blindext.SetNSBFilterLimit(70);
1617	}
1618	else if (run < gkThirdBlindPixelInstallation)
1619	{
1620
1621	MCalibrationBlindCamTwoNewStyle blindresults;
1622
1623	if (IsIntensity())
1624	blindresults.Copy(*fIntensBlindCam.GetCam());
1625	else
1626	blindresults.Copy(fCalibrationBlindCam);
1627
1628	blindext.SetNumBlindPixels(blindresults.GetSize());
1629	for (Int_t i=0;i<blindresults.GetSize();i++)
1630	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1631
1632	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1633	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1634	blindext.SetRange(5,8,0,2);
1635	blindext.SetNSBFilterLimit(38);
1636
1637	}
1638	else
1639	{
1640
1641	MCalibrationBlindCamThreeNewStyle blindresults;
1642
1643	if (IsIntensity())
1644	blindresults.Copy(*fIntensBlindCam.GetCam());
1645	else
1646	blindresults.Copy(fCalibrationBlindCam);
1647
1648	blindext.SetNumBlindPixels(blindresults.GetSize());
1649
1650	for (Int_t i=0;i<blindresults.GetSize();i++)
1651	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1652
1653	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1654	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1655	blindext.SetDataType(MExtractBlindPixel::kRawEvt2);
1656	blindext.SetRange(5,8,0,2);
1657	blindext.SetNSBFilterLimit(38);
1658
1659	}
1660
1661	}
1662
1663	// --------------------------------------------------------------------------
1664	//
1665	// Execute the task list and the eventloop:
1666	//
1667	// - Check the colour of the files in fRuns (FindColor()), otherwise return
1668	// - Check for consistency between run numbers and number of files
1669	// - Add fRuns to MReadMarsFile
1670	// - Put into MParList:
1671	// 1) MPedestalCam (pedcam)
1672	// 2) MCalibrationQECam (fQECam)
1673	// 3) MCalibrationChargeCam (fCalibrationCam)
1674	// 4) MCalibrationRelTimeCam (fRelTimeCam) (only if flag IsRelTimes() is chosen)
1675	// 5) MBadPixelsCam (fBadPixels)
1676	// 6) MCalibrationChargePINDiode
1677	// 7) MCalibrationBlindPix
1678	// - Put into the MTaskList:
1679	// 1) MReadMarsFile
1680	// 2) MBadPixelsMerge
1681	// 3) MGeomApply
1682	// 4) MExtractor
1683	// 5) MExtractPINDiode
1684	// 6) MExtractBlindPixel
1685	// 7) MExtractTime (only if flag IsRelTimes() is chosen)
1686	// 8) MContinue(MFCosmics)
1687	// 9) MFillH("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode")
1688	// 10) MFillH("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam")
1689	// 11) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam")
1690	// 12) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillRelTime")
1691	// 13) MCalibrationChargeCalc
1692	// 14) MFillH("MHCalibrationRelTimeCam", "MArrivalTimeCam") (only if flag IsRelTimes() is chosen)
1693	// 15) MCalibrationRelTimeCalc
1694	// - Execute MEvtLoop
1695	// - DisplayResult()
1696	// - WriteResult()
1697	//
1698	Bool_t MJCalibration::Process(MPedestalCam &pedcam)
1699	{
1700	if (!fSequence.IsValid())
1701	{
1702	*fLog << err << "ERROR - Sequence invalid..." << endl;
1703	return kFALSE;
1704	}
1705
1706	*fLog << inf;
1707	fLog->Separator(GetDescriptor());
1708	*fLog << "Calculate calibration constants from Sequence #";
1709	*fLog << fSequence.GetSequence() << endl << endl;
1710
1711	// --------------------------------------------------------------------------------
1712
1713	if (!CheckEnv())
1714	return kFALSE;
1715
1716	// --------------------------------------------------------------------------------
1717
1718	// Setup Tasklist
1719	MParList plist;
1720	MTaskList tlist;
1721	plist.AddToList(&tlist);
1722	plist.AddToList(this); // take care of fDisplay!
1723
1724	MDirIter iter;
1725	const Int_t n0 = fSequence.SetupCalRuns(iter, fPathData, IsUseRawData());
1726	const Int_t n1 = fSequence.GetNumCalRuns();
1727	if (n0==0)
1728	{
1729	*fLog << err << "ERROR - No input files of sequence found!" << endl;
1730	return kFALSE;
1731	}
1732	if (n0!=n1)
1733	{
1734	*fLog << err << "ERROR - Number of files found ("
1735	<< n0 << ") doesn't match number of files in sequence ("
1736	<< n1 << ")" << endl;
1737	if (fLog->GetDebugLevel()>4)
1738	{
1739	*fLog << dbg << "Files which are searched:" << endl;
1740	iter.Print();
1741	}
1742	return kFALSE;
1743	}
1744
1745	//
1746	// Input containers
1747	//
1748	pedcam.SetName("MPedestalCam"); // MPedestalFundamental
1749	plist.AddToList(&pedcam);
1750	plist.AddToList(&fBadPixels);
1751
1752	//
1753	// Calibration Results containers
1754	//
1755	if (IsIntensity())
1756	{
1757
1758	MCalibrationChargeCam cam = (MCalibrationChargeCam)fIntensCalibCam.GetCam();
1759	cam->InitSize(fCalibrationCam.GetSize());
1760	cam->MergeHiLoConversionFactors(fCalibrationCam);
1761
1762	plist.AddToList(&fIntensQECam);
1763	plist.AddToList(&fIntensCalibCam);
1764	// plist.AddToList(&fIntensCalibrationPINDiode);
1765	plist.AddToList(&fIntensRelTimeCam);
1766	plist.AddToList(&fIntensBadCam);
1767	if (IsUseBlindPixel())
1768	plist.AddToList(&fIntensBlindCam);
1769	}
1770	else
1771	{
1772	plist.AddToList(&fQECam);
1773	plist.AddToList(&fCalibrationCam);
1774	plist.AddToList(&fRelTimeCam);
1775	if (IsUseBlindPixel())
1776	plist.AddToList(&fCalibrationBlindCam);
1777	if (IsUsePINDiode())
1778	plist.AddToList(&fCalibrationPINDiode);
1779	}
1780
1781	//
1782	// Initialize two histogram containers which could be modified in this class
1783	//
1784	MHCalibrationRelTimeCam reltimecam;
1785	MHCalibrationChargeCam chargecam;
1786	MHCalibrationChargeBlindCam blindcam;
1787	plist.AddToList(&chargecam);
1788
1789	if (IsUseBlindPixel())
1790	plist.AddToList(&blindcam);
1791	if (IsRelTimes())
1792	plist.AddToList(&reltimecam);
1793	//
1794	// Data Reading tasks
1795	//
1796	MReadMarsFile read("Events");
1797	MRawFileRead rawread(NULL);
1798
1799	if (IsUseRawData())
1800	{
1801	rawread.AddFiles(iter);
1802	tlist.AddToList(&rawread);
1803	}
1804	else
1805	{
1806	read.DisableAutoScheme();
1807	read.AddFiles(iter);
1808	tlist.AddToList(&read);
1809	}
1810
1811	//
1812	// Other Tasks
1813	//
1814
1815	// Set the default for data version earlier than 5, where no valid
1816	// trigger pattern exists. There should not be pin diode or other
1817	// types of events inside the calibration files which should be skipped,
1818	// anyway. So we set the default such that the MContinue ccalib
1819	// will never be executed.
1820	MTriggerPatternDecode trgpat;
1821	MFTriggerPattern fcalib("CalibFilter");
1822	fcalib.SetDefault(kFALSE);
1823	fcalib.DenyCalibration(MFTriggerPattern::kPrescaled);
1824
1825	MContinue ccalib(&fcalib,"ContTrigPattern");
1826
1827	MCalibrationPatternDecode decode;
1828	MGeomApply apply;
1829	apply.SetGeometry(fGeometry);
1830
1831	MBadPixelsMerge merge(&fBadPixels);
1832	MExtractPINDiode pinext;
1833	MExtractBlindPixel blindext;
1834
1835	if (IsUseBlindPixel())
1836	InitBlindPixel(blindext, blindcam);
1837
1838	// MExtractSlidingWindow extract2;
1839	// MExtractTimeHighestIntegral timehigh;
1840	MCalibrationChargeCalc calcalc;
1841	MCalibrationRelTimeCalc timecalc;
1842	calcalc.SetExtractor(fExtractor);
1843	calcalc.SetOutputFile("");
1844	timecalc.SetOutputFile("");
1845
1846	if (IsDebug())
1847	{
1848	chargecam.SetDebug();
1849	calcalc.SetDebug();
1850	}
1851
1852	//
1853	// Calibration histogramming
1854	//
1855	MFillH fillpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
1856	MFillH fillbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
1857	MFillH fillcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
1858	MFillH filltme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
1859	fillpin.SetBit(MFillH::kDoNotDisplay);
1860	fillbnd.SetBit(MFillH::kDoNotDisplay);
1861	fillcam.SetBit(MFillH::kDoNotDisplay);
1862	filltme.SetBit(MFillH::kDoNotDisplay);
1863
1864	//
1865	// Set default extractors in case, none has been set...
1866	//
1867	/*
1868	if (!fExtractor)
1869	fExtractor = &extract2;
1870	if (!fTimeExtractor)
1871	fTimeExtractor = &timehigh;
1872	*/
1873	MExtractTimeAndChargeSpline spline;
1874	if (!fExtractor)
1875	fExtractor = &spline;
1876	// if (!fTimeExtractor)
1877	// fTimeExtractor = &timehigh;
1878
1879	const Bool_t istimecharge = fExtractor->InheritsFrom("MExtractTimeAndCharge");
1880
1881	//
1882	// Look if the extractor is a pure charge or also a time extractor
1883	//
1884	if (istimecharge)
1885	{
1886	if (fExtractorCam.GetSize() == pedcam.GetSize())
1887	calcalc.SetPedestals(&fExtractorCam);
1888	else
1889	{
1890	*fLog << err << GetDescriptor() << "ERROR - ";
1891	*fLog << "Used Extractor derives from MExtractTimeAndCharge, " << endl;
1892	*fLog << "but MExtractorCam size " << fExtractorCam.GetSize() << " ";
1893	*fLog << "mismatch pedcam size " << pedcam.GetSize() << "! " << endl;
1894	return kFALSE;
1895	}
1896	}
1897
1898	//
1899	// Setup more tasks and tasklist
1900	//
1901	MTaskEnv taskenv("ExtractSignal");
1902	taskenv.SetDefault(fExtractor);
1903
1904	tlist.AddToList(&trgpat);
1905	if (fColor != MCalibrationCam::kCT1)
1906	tlist.AddToList(&ccalib);
1907	tlist.AddToList(&decode);
1908	tlist.AddToList(&merge);
1909	tlist.AddToList(&apply);
1910
1911	MPedCalcPedRun pedcalc;
1912	pedcalc.SetExtractWindow(fExtractor->GetHiGainFirst(),TMath::Nint(fExtractor->GetNumHiGainSamples()));
1913
1914	if (IsIntensity())
1915	tlist.AddToList(&pedcalc);
1916
1917	MCalibColorSet colorset;
1918	if (fColor != MCalibrationCam::kNONE)
1919	colorset.SetExplicitColor(fColor);
1920	tlist.AddToList(&colorset);
1921
1922	tlist.AddToList(&taskenv);
1923
1924	if (IsUsePINDiode())
1925	tlist.AddToList(&pinext);
1926	if (IsUseBlindPixel())
1927	tlist.AddToList(&blindext);
1928
1929	MTaskEnv taskenv2("ExtractTime");
1930	if (!istimecharge)
1931	{
1932	taskenv2.SetDefault(fTimeExtractor);
1933
1934	if (IsRelTimes())
1935	tlist.AddToList(&taskenv2);
1936	}
1937
1938	//
1939	// Apply a filter against cosmics
1940	// (will have to be needed in the future
1941	// when the calibration hardware-trigger is working)
1942	//
1943	MFCosmics cosmics;
1944	cosmics.SetMaxEmptyPixels(0.05);
1945	cosmics.SetMaxAcceptedFraction(0.5); // max=0.5 cosmics
1946
1947	MContinue cont(&cosmics, "ContCosmics");
1948	tlist.AddToList(&cont);
1949
1950	MCalibColorSteer steer;
1951	if (IsIntensity())
1952	tlist.AddToList(&steer);
1953
1954	if (IsRelTimes())
1955	{
1956	tlist.AddToList(&filltme);
1957	tlist.AddToList(&timecalc);
1958	}
1959
1960	tlist.AddToList(&fillcam);
1961
1962	if (IsUseBlindPixel())
1963	tlist.AddToList(&fillbnd);
1964	if (IsUsePINDiode())
1965	tlist.AddToList(&fillpin);
1966
1967	tlist.AddToList(&calcalc);
1968
1969
1970	MHCamEvent evt2(0, "Extra'd", "Extracted Calibration Signal;;S [cnts/sl]");
1971	MHCamEvent evt9(4, "ArrTm", "Extracted ArrivalTime;;T");
1972
1973	MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtractedSignal");
1974	MFillH fill9(&evt9, "MArrivalTimeCam", "FillArrivalTime");
1975
1976	tlist.AddToList(&fill2);
1977	tlist.AddToList(&fill9);
1978
1979
1980	// Create and setup the eventloop
1981	MEvtLoop evtloop(fName);
1982	evtloop.SetParList(&plist);
1983	evtloop.SetDisplay(fDisplay);
1984	evtloop.SetLogStream(fLog);
1985	if (!SetupEnv(evtloop))
1986	return kFALSE;
1987
1988	if (!taskenv.GetTask() && !taskenv2.GetTask())
1989	{
1990	*fLog << err << "ERROR - Neither ExtractSignal nor ExtractTime initialized or both '<dummy>'." << endl;
1991	return kFALSE;
1992	}
1993
1994	if (!WriteTasks(taskenv.GetTask(), istimecharge ? 0 : taskenv2.GetTask()))
1995	return kFALSE;
1996
1997	// Execute first analysis
1998	const Bool_t rc = evtloop.Eventloop();
1999
2000	if (!fCalibrationPINDiode.IsValid())
2001	SetUsePINDiode(kFALSE);
2002
2003	const Int_t numexec = IsUseRawData() ? rawread.GetNumExecutions() : read.GetNumExecutions();
2004	if (numexec>0)
2005	{
2006	DisplayResult(plist);
2007	if (!WriteResult(plist))
2008	return kFALSE;
2009	}
2010
2011	if (!rc)
2012	{
2013	*fLog << err << GetDescriptor() << ": Failed." << endl;
2014	return kFALSE;
2015	}
2016
2017	// --------------------------------------------------------------------------------
2018
2019	if (fIsPixelCheck)
2020	{
2021	chargecam[fCheckedPixId].DrawClone("datacheck");
2022	chargecam(fCheckedPixId).DrawClone("datacheck");
2023
2024	if (IsRelTimes())
2025	{
2026	reltimecam[fCheckedPixId].DrawClone("");
2027	reltimecam(fCheckedPixId).DrawClone("");
2028	}
2029	}
2030
2031	*fLog << all << GetDescriptor() << ": Done." << endl;
2032
2033	return kTRUE;
2034	}
2035
2036	/*
2037	Bool_t MJCalibration::WriteEventloop(MEvtLoop &evtloop) const
2038	{
2039	if (IsNoStorage())
2040	return kTRUE;
2041
2042	if (fPathOut.IsNull())
2043	return kTRUE;
2044
2045	const TString oname(GetOutputFile());
2046
2047	*fLog << inf << "Writing to file: " << oname << endl;
2048
2049	TFile file(oname, fOverwrite?"RECREATE":"NEW", "File created by MJCalibration", 9);
2050	if (!file.IsOpen())
2051	{
2052	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
2053	return kFALSE;
2054	}
2055
2056	if (evtloop.Write(fName)<=0)
2057	{
2058	*fLog << err << "Unable to write MEvtloop to " << oname << endl;
2059	return kFALSE;
2060	}
2061
2062	return kTRUE;
2063	}
2064	*/
2065
2066	Bool_t MJCalibration::WriteTasks(MTask t1, MTask t2) const
2067	{
2068	if (IsNoStorage())
2069	return kTRUE;
2070
2071	TObjArray cont;
2072	if (t1)
2073	cont.Add(t1);
2074	if (t2)
2075	cont.Add(t2);
2076
2077	return WriteContainer(cont, GetOutputFileName(), fOverwrite?"RECREATE":"NEW");
2078	}
2079
2080	// --------------------------------------------------------------------------
2081	//
2082	// Write the result into the output file GetOutputFile(), if fOutputPath exists.
2083	//
2084	// The following containers are written:
2085	// - MStatusDisplay
2086	// - MCalibrationChargeCam or MCalibrationIntensityChargeCam
2087	// - MCalibrationBlindCam or MCalibrationIntensityBlindCam
2088	// - MCalibrationQECam or MCalibrationIntensityQECam
2089	// - MCalibrationChargePINDiode
2090	// - MBadPixelsCam
2091	// If the flag kRelTimes is set, then also:
2092	// - MCalibrationRelTimeCam or MCalibrationIntensityRelTimeCam
2093	//
2094	Bool_t MJCalibration::WriteResult(MParList &plist)
2095	{
2096	if (IsNoStorage())
2097	return kTRUE;
2098
2099	TObjArray cont;
2100
2101	if (IsIntensity())
2102	{
2103	cont.Add(&fIntensBadCam);
2104	cont.Add(&fIntensCalibCam);
2105	cont.Add(&fIntensQECam);
2106	cont.Add(&fIntensBlindCam);
2107	}
2108	else
2109	{
2110	cont.Add(&fBadPixels);
2111	cont.Add(&fCalibrationCam);
2112	cont.Add(&fQECam);
2113	cont.Add(&fCalibrationBlindCam);
2114	}
2115	cont.Add(&fCalibrationPINDiode);
2116
2117	//if (IsRelTimes())
2118	cont.Add(IsIntensity() ? (TObject)&fIntensRelTimeCam : (TObject)&fRelTimeCam);
2119
2120	if (fExtractorCam.GetSize() != 0)
2121	cont.Add(&fExtractorCam);
2122
2123	TObject *pedcam = plist.FindObject("MPedestalCam");
2124	if (!pedcam)
2125	*fLog << warn << " - WARNING - MPedestalCam (fundamental)... not found for writing!" << endl;
2126	else
2127	cont.Add(pedcam);
2128
2129	TObject *geom = plist.FindObject("MGeomCam");
2130	if (!geom)
2131	*fLog << warn << " - WARNING - MGeomCam... not found for writing!" << endl;
2132	else
2133	cont.Add(geom);
2134
2135	if (IsHistsStorage())
2136	{
2137	cont.Add(plist.FindObject("MHCalibrationChargeCam"));
2138	cont.Add(plist.FindObject("MHCalibrationChargeBlindCam"));
2139	cont.Add(plist.FindObject("MHCalibrationChargePINDiode"));
2140	if (IsRelTimes())
2141	cont.Add(plist.FindObject("MHCalibrationRelTimeCam"));
2142	}
2143
2144	return WriteContainer(cont, GetOutputFileName(), "UPDATE");
2145	}
2146
2147	void MJCalibration::DisplayDoubleProject(MHCamera cam, const char whatsmall, const char* whatbig) const
2148	{
2149
2150	TArrayI inner(1);
2151	inner[0] = 0;
2152
2153	TArrayI outer(1);
2154	outer[0] = 1;
2155
2156	TArrayI s1(3);
2157	s1[0] = 6;
2158	s1[1] = 1;
2159	s1[2] = 2;
2160
2161	TArrayI s2(3);
2162	s2[0] = 3;
2163	s2[1] = 4;
2164	s2[2] = 5;
2165
2166	TVirtualPad *pad = gPad;
2167	pad->Divide(2,1);
2168
2169	TH1D *inout[2];
2170
2171	for (int i=0; i<2; i++)
2172	{
2173	pad->cd(i+1);
2174	gPad->SetBorderMode(0);
2175	gPad->SetTicks();
2176
2177	inout[i] = cam->ProjectionS(TArrayI(), TArrayI(1,&i), i==0 ? "Inner" : "Outer");
2178	FixDataCheckHist(inout[i]);
2179	inout[i]->SetTitle(Form("%s %s",cam->GetTitle(),i==0 ? "Inner" : "Outer"));
2180	inout[i]->SetDirectory(NULL);
2181	inout[i]->SetLineColor(kRed+i);
2182	inout[i]->SetBit(kCanDelete);
2183	inout[i]->Draw();
2184	//
2185	// Display the outliers as dead and noisy pixels
2186	//
2187	if (!inout[i]->Fit("gaus","0Q"))
2188	DisplayOutliers(inout[i],whatsmall,whatbig);
2189
2190	gPad->Modified();
2191	gPad->Update();
2192	TPaveStats st = (TPaveStats)inout[i]->GetListOfFunctions()->FindObject("stats");
2193	st->SetY1NDC(0.6);
2194	st->SetY2NDC(0.9);
2195	st->SetX1NDC(0.55);
2196	st->SetX2NDC(0.99);
2197	gPad->Modified();
2198	gPad->Update();
2199
2200	TLegend *leg2 = new TLegend(0.55,0.4,0.99,0.6);
2201
2202	//
2203	// Display the two half of the camera separately
2204	//
2205	TH1D *half[2];
2206	half[0] = cam->ProjectionS(s1, TArrayI(1,&i), "Sector 6-1-2");
2207	half[1] = cam->ProjectionS(s2, TArrayI(1,&i), "Sector 3-4-5");
2208
2209	for (int j=0; j<2; j++)
2210	{
2211	half[j]->SetLineColor(kRed+i+2*j+1);
2212	half[j]->SetDirectory(NULL);
2213	half[j]->SetBit(kCanDelete);
2214	half[j]->Draw("same");
2215	leg2->AddEntry(half[j], half[j]->GetName(), "l");
2216	}
2217	leg2->Draw();
2218	}
2219	}

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