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Last change on this file since 8280 was 8245, checked in by tbretz, 18 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	! Author(s): Markus Gaug, 02/2004 <mailto:markus@ifae.es>
20	!
21	! Copyright: MAGIC Software Development, 2000-2005
22	!
23	!
24	\* ======================================================================== */
25
26	/////////////////////////////////////////////////////////////////////////////
27	//
28	// MJCalibration
29	//
30	// Do one calibration loop over serious of runs with the same pulser
31	// colour and the same intensity. The following containers (rectangular) and
32	// tasks (ellipses) are called to produce an MCalibrationChargeCam and to
33	// update the MCalibrationQECam: (MCalibrate is not called from this class)
34	//
35	//Begin_Html
36	/*
37	<img src="images/CalibClasses.gif">
38	*/
39	//End_Html
40	//
41	// Different signal extractors can be set with the command SetExtractor()
42	// Only extractors deriving from MExtractor can be set, default is MExtractSlidingWindow
43	//
44	// Different arrival time extractors can be set with the command SetTimeExtractor()
45	// Only extractors deriving from MExtractTime can be set, default is MExtractTimeHighestIntegral
46	//
47	// At the end of the eventloop, plots and results are displayed, depending on
48	// the flags set (see DisplayResult())
49	//
50	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
51	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
52	// Otherwise, (default: SetNormalDisplay()), a good selection of plots is given
53	//
54	// The absolute light calibration devices Blind Pixel and PIN Diode can be switched on
55	// and off with the commands:
56	//
57	// - SetUseBlindPixel(Bool_t )
58	// - SetUsePINDiode(Bool_t )
59	//
60	// See also: MHCalibrationChargePix, MHCalibrationChargeCam, MHGausEvents
61	// MHCalibrationChargeBlindPix, MHCalibrationChargePINDiode
62	// MCalibrationChargePix, MCalibrationChargeCam, MCalibrationChargeCalc
63	// MCalibrationBlindPix, MCalibrationChargePINDiode,
64	// MCalibrationQECam, MBadPixelsPix, MBadPixelsCam
65	//
66	// If the flag RelTimeCalibration() is set, a calibration of the relative arrival
67	// times is also performed. The following containers (rectangular) and
68	// tasks (ellipses) are called to produce an MCalibrationRelTimeCam used by
69	// MCalibrateTime to correct timing offset between pixels: (MCalibrateTime is not
70	// called from this class)
71	//
72	//Begin_Html
73	/*
74	<img src="images/RelTimeClasses.gif">
75	*/
76	//End_Html
77	//
78	// Different arrival time extractors can be set directly with the command
79	// SetTimeExtractor(MExtractor *)
80	//
81	// Resource file entries are case sensitive!
82	//
83	// See also: MHCalibrationRelTimePix, MHCalibrationRelTimeCam, MHGausEvents
84	// MCalibrationRelTimePix, MCalibrationRelTimeCam
85	// MBadPixelsPix, MBadPixelsCam
86	//
87	/////////////////////////////////////////////////////////////////////////////
88	#include "MJCalibration.h"
89
90	#include <TFile.h>
91	#include <TF1.h>
92	#include <TStyle.h>
93	#include <TCanvas.h>
94	#include <TSystem.h>
95	#include <TLine.h>
96	#include <TLatex.h>
97	#include <TLegend.h>
98	#include <TRegexp.h>
99	#include <TPaveText.h>
100	#include <TPaveStats.h>
101	#include <TEnv.h>
102
103	#include "MLog.h"
104	#include "MLogManip.h"
105
106	#include "MRunIter.h"
107	#include "MSequence.h"
108	#include "MParList.h"
109	#include "MTaskList.h"
110	#include "MEvtLoop.h"
111
112	#include "MHCamera.h"
113	#include "MGeomCam.h"
114
115	#include "MPedestalCam.h"
116	#include "MPedestalSubtract.h"
117	#include "MCalibColorSteer.h"
118
119	#include "MCalibrationIntensityChargeCam.h"
120	#include "MCalibrationIntensityBlindCam.h"
121	#include "MCalibrationIntensityRelTimeCam.h"
122	#include "MCalibrationIntensityQECam.h"
123
124	#include "MCalibrationPatternDecode.h"
125	#include "MCalibrationCam.h"
126	#include "MCalibrationHiLoCam.h"
127	#include "MCalibrationHiLoPix.h"
128	#include "MCalibrationQECam.h"
129	#include "MCalibrationQEPix.h"
130	#include "MCalibrationChargeCam.h"
131	#include "MCalibrationChargePix.h"
132	#include "MCalibrationChargePINDiode.h"
133	#include "MCalibrationBlindPix.h"
134	#include "MCalibrationBlindCam.h"
135	#include "MCalibrationBlindCamOneOldStyle.h"
136	#include "MCalibrationBlindCamTwoNewStyle.h"
137	#include "MCalibrationBlindCamThreeNewStyle.h"
138	#include "MCalibrationChargeCalc.h"
139	#include "MCalibColorSet.h"
140	#include "MCalibrationRelTimeCam.h"
141	#include "MCalibrationRelTimeCalc.h"
142
143	#include "MHGausEvents.h"
144	#include "MHCalibrationCam.h"
145	#include "MHCalibrationChargeCam.h"
146	#include "MHCalibrationChargeBlindCam.h"
147	#include "MHCalibrationChargePINDiode.h"
148	#include "MHCalibrationRelTimeCam.h"
149	#include "MHCalibrationPix.h"
150
151	#include "MHCamEvent.h"
152
153	#include "MReadMarsFile.h"
154	#include "MPedCalcPedRun.h"
155	#include "MRawFileRead.h"
156	#include "MGeomApply.h"
157	#include "MPedestalSubtract.h"
158	#include "MTaskEnv.h"
159	#include "MBadPixelsMerge.h"
160	#include "MBadPixelsCam.h"
161	#include "MExtractTime.h"
162	#include "MExtractor.h"
163	#include "MExtractPINDiode.h"
164	#include "MExtractBlindPixel.h"
165	//#include "MExtractSlidingWindow.h"
166	//#include "MExtractTimeHighestIntegral.h"
167	#include "MExtractTimeAndChargeSpline.h"
168	#include "MFCosmics.h"
169	#include "MFTriggerPattern.h"
170	#include "MContinue.h"
171	#include "MFillH.h"
172
173	#include "MTriggerPatternDecode.h"
174
175	#include "MArrivalTimeCam.h"
176
177	#include "MStatusDisplay.h"
178
179	ClassImp(MJCalibration);
180
181	using namespace std;
182
183	const Int_t MJCalibration::gkIFAEBoxInaugurationRun = 20113;
184	const Int_t MJCalibration::gkSecondBlindPixelInstallation = 31693;
185	const Int_t MJCalibration::gkSpecialPixelsContInstallation = 34057;
186	const Int_t MJCalibration::gkThirdBlindPixelInstallation = 43308;
187	const TString MJCalibration::fgReferenceFile = "mjobs/calibrationref.rc";
188	const TString MJCalibration::fgHiLoCalibFile = "mjobs/hilocalib_df46.root";
189
190	// --------------------------------------------------------------------------
191	//
192	// Default constructor.
193	//
194	// - fExtractor to NULL, fTimeExtractor to NULL, fColor to kNONE,
195	// fDisplay to kNormalDisplay, kRelTimes to kFALSE, kataCheck to kFALSE, kDebug to kFALSE,
196	// kIntensity to kFALSE
197	// - SetUseBlindPixel()
198	// - SetUsePINDiode()
199	//
200	MJCalibration::MJCalibration(const char name, const char title)
201	: fExtractor(NULL), fTimeExtractor(NULL),
202	fColor(MCalibrationCam::kNONE), fDisplayType(kDataCheckDisplay),
203	fGeometry("MGeomCamMagic")
204	{
205
206	fName = name ? name : "MJCalibration";
207	fTitle = title ? title : "Tool to create the calibration constants for one calibration run";
208
209	SetHiLoCalibration();
210	SetRelTimeCalibration();
211	SetDebug(kFALSE);
212	SetIntensity(kFALSE);
213
214	SetReferenceFile();
215	SetHiLoCalibFile();
216
217	fConvFADC2PheMin = 0.;
218	fConvFADC2PheMax = 1.5;
219	fConvFADC2PhotMin = 0.;
220	fConvFADC2PhotMax = 10.;
221	fQEMin = 0.;
222	fQEMax = 0.3;
223	fArrivalTimeMin = 1.;
224	fArrivalTimeMax = 10.;
225	fTimeOffsetMin = -3.;
226	fTimeOffsetMax = 3.;
227	fTimeResolutionMin = 0.;
228	fTimeResolutionMax = 1.;
229
230	fRefFADC2PheInner = 0.14;
231	fRefFADC2PheOuter = 0.4;
232	fRefConvFADC2PheInner = 0.14;
233	fRefConvFADC2PheOuter = 0.52;
234	fRefQEInner = 0.18;
235	fRefQEOuter = 0.12;
236	fRefArrivalTimeInner = 4.5;
237	fRefArrivalTimeOuter = 5.0;
238	fRefArrivalTimeRmsInner = 0.5;
239	fRefArrivalTimeRmsOuter = 0.5;
240	fRefTimeOffsetInner = -0.23;
241	fRefTimeOffsetOuter = 0.39;
242	fRefTimeResolutionInner = 0.153;
243	fRefTimeResolutionOuter = 0.128;
244
245	}
246
247	void MJCalibration::DrawTab(MParList &plist, const char cont, const char name, Option_t *opt)
248	{
249	TObject *obj = plist.FindObject(cont);
250	if (!obj)
251	return;
252
253	fDisplay->AddTab(name);
254	obj->DrawClone(opt);
255	}
256
257	// --------------------------------------------------------------------------
258	//
259	// Display the results in MStatusDisplay:
260	//
261	// - Add "Calibration" to the MStatusDisplay title
262	// - Retrieve the MGeomCam from MParList
263	// - Initialize the following MHCamera's:
264	// 1) MCalibrationPix::GetMean()
265	// 2) MCalibrationPix::Sigma()
266	// 3) MCalibrationChargePix::GetRSigma()
267	// 4) MCalibrationChargePix::GetRSigmaPerCharge()
268	// 5) MCalibrationChargePix::GetPheFFactorMethod()
269	// 6) MCalibrationChargePix::GetMeanConvFADC2Phe()
270	// 7) MCalibrationChargePix::GetMeanFFactorFADC2Phot()
271	// 8) MCalibrationQEPix::GetQECascadesFFactor()
272	// 9) MCalibrationQEPix::GetQECascadesBlindPixel()
273	// 10) MCalibrationQEPix::GetQECascadesPINDiode()
274	// 11) MCalibrationQEPix::GetQECascadesCombined()
275	// 12) MCalibrationQEPix::IsAverageQEFFactorAvailable()
276	// 13) MCalibrationQEPix::IsAverageQEBlindPixelAvailable()
277	// 14) MCalibrationQEPix::IsAverageQEPINDiodeAvailable()
278	// 15) MCalibrationQEPix::IsAverageQECombinedAvailable()
279	// 16) MCalibrationChargePix::IsHiGainSaturation()
280	// 17) MCalibrationPix::GetHiLoMeansDivided()
281	// 18) MCalibrationPix::GetHiLoSigmasDivided()
282	// 19) MCalibrationChargePix::GetHiGainPickup()
283	// 20) MCalibrationChargePix::GetLoGainPickup()
284	// 21) MCalibrationChargePix::GetHiGainBlackout()
285	// 22) MCalibrationChargePix::GetLoGainBlackout()
286	// 23) MCalibrationPix::IsExcluded()
287	// 24) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnsuitableRun)
288	// 25) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnreliableRun)
289	// 26) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kHiGainOscillating)
290	// 27) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kLoGainOscillating)
291	// 28) MCalibrationChargePix::GetAbsTimeMean()
292	// 29) MCalibrationChargePix::GetAbsTimeRms()
293	//
294	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
295	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
296	// and otherwise, (default: SetNormalDisplay()), a good selection of plots is given
297	//
298	void MJCalibration::DisplayResult(MParList &plist)
299	{
300	if (!fDisplay)
301	return;
302
303	TString drawoption = "nonew ";
304	if (fDisplayType == kDataCheckDisplay)
305	drawoption += "datacheck";
306	if (fDisplayType == kFullDisplay)
307	drawoption += "all";
308
309	if (IsUsePINDiode())
310	DrawTab(plist, "MHCalibrationChargePINDiode", "PINDiode", drawoption);
311	if (IsUseBlindPixel())
312	DrawTab(plist, "MHCalibrationChargeBlindCam", "BlindPix", drawoption);
313	if (IsRelTimes())
314	DrawTab(plist, "MHCalibrationRelTimeCam", "Time", drawoption);
315	DrawTab(plist, "MHCalibrationChargeCam", "Charge", drawoption);
316
317	//
318	// Update display
319	//
320	TString title = fDisplay->GetTitle();
321	title += "-- Calibration ";
322	title += Form("calib%08d", fSequence.GetSequence());
323	title += " --";
324	fDisplay->SetTitle(title);
325
326	//
327	// Get container from list
328	//
329	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
330
331	// Create histograms to display
332	MHCamera disp1 (geomcam, "Charge", "Fitted Mean Signal (Charges)");
333	MHCamera disp2 (geomcam, "SigmaCharge", "Sigma of Fitted Signal");
334	MHCamera disp3 (geomcam, "RSigma", "Reduced Sigmas");
335	MHCamera disp4 (geomcam, "RSigmaPerCharge", "Reduced Sigma per Charge");
336	MHCamera disp5 (geomcam, "NumPhes", "Number Photo-electrons");
337	MHCamera disp6 (geomcam, "ConvFADC2Phes", "Phes per Charge (Before Flat-Field)");
338	MHCamera disp7 (geomcam, "TotalFFactor", "Total F-Factor(F-Factor Method)");
339	MHCamera disp8 (geomcam, "CascadesQEFFactor", "Cascades QE (F-Factor Method)");
340	MHCamera disp9 (geomcam, "CascadesQEBlindPix","Cascades QE (Blind Pixel Method)");
341	MHCamera disp10(geomcam, "CascadesQEPINDiode","Cascades QE (PIN Diode Method)");
342	MHCamera disp11(geomcam, "CascadesQECombined","Cascades QE (Combined Method)");
343	MHCamera disp12(geomcam, "FFactorValid", "Pixels with Valid F-Factor Calibration");
344	MHCamera disp13(geomcam, "BlindPixelValid", "Pixels with valid BlindPixel Calibration");
345	MHCamera disp14(geomcam, "PINdiodeValid", "Pixels with Valid PINDiode Calibration");
346	MHCamera disp15(geomcam, "CombinedValid", "Pixels with Valid Combined Calibration");
347	MHCamera disp16(geomcam, "Saturation", "Pixels with Saturated Hi Gain");
348	MHCamera disp17(geomcam, "ConversionMeans", "Conversion HiGain.vs.LoGain Means");
349	MHCamera disp18(geomcam, "ConversionSigmas", "Conversion HiGain.vs.LoGain Sigmas");
350	MHCamera disp19(geomcam, "HiGainPickup", "Number Pickup Events Hi Gain");
351	MHCamera disp20(geomcam, "LoGainPickup", "Number Pickup Events Lo Gain");
352	MHCamera disp21(geomcam, "HiGainBlackout", "Number Blackout Events Hi Gain");
353	MHCamera disp22(geomcam, "LoGainBlackout", "Number Blackout Events Lo Gain");
354	MHCamera disp23(geomcam, "Excluded", "Pixels Previously Excluded");
355	MHCamera disp24(geomcam, "UnSuitable", "Pixels NOT Suited for Further Analysis");
356	MHCamera disp25(geomcam, "UnReliable", "Pixels Suitable, but NOT Reliable for Further Analysis");
357	MHCamera disp26(geomcam, "HiGainOscillating", "Oscillating Pixels High Gain");
358	MHCamera disp27(geomcam, "LoGainOscillating", "Oscillating Pixels Low Gain");
359	MHCamera disp28(geomcam, "AbsTimeMean", "Abs. Arrival Times");
360	MHCamera disp29(geomcam, "AbsTimeRms", "RMS of Arrival Times");
361	MHCamera disp30(geomcam, "MeanTime", "Mean Rel. Arrival Times");
362	MHCamera disp31(geomcam, "SigmaTime", "Sigma Rel. Arrival Times");
363	MHCamera disp32(geomcam, "TimeProb", "Probability of Time Fit");
364	MHCamera disp33(geomcam, "TimeNotFitValid", "Pixels with not valid Fit Results");
365	MHCamera disp34(geomcam, "TimeOscillating", "Oscillating Pixels");
366	MHCamera disp35(geomcam, "TotalConv", "Conversion Factor to Photons");
367	MHCamera disp36(geomcam, "RMSperMean", "Charge histogram RMS per Mean");
368	MHCamera disp37(geomcam, "TotalConvPhe", "Conversion Factor to equiv. Phe's");
369
370	MCalibrationChargeCam *cam = NULL;
371	MCalibrationQECam *qecam = NULL;
372	MCalibrationRelTimeCam *relcam = NULL;
373	MBadPixelsCam *badcam = NULL;
374
375	if (IsIntensity())
376	{
377	cam = (MCalibrationChargeCam*) fIntensCalibCam.GetCam();
378	qecam = (MCalibrationQECam*) fIntensQECam.GetCam();
379	relcam = (MCalibrationRelTimeCam*)fIntensRelTimeCam.GetCam();
380	badcam = (MBadPixelsCam*) fIntensBadCam.GetCam();
381	}
382	else
383	{
384	cam = &fCalibrationCam;
385	qecam = &fQECam;
386	relcam = &fRelTimeCam;
387	badcam = &fBadPixels;
388	}
389
390	// Fitted charge means and sigmas
391	disp1.SetCamContent(*cam, 0);
392	disp1.SetCamError( *cam, 1);
393	disp2.SetCamContent(*cam, 2);
394	disp2.SetCamError( *cam, 3);
395
396	// Reduced Sigmas and reduced sigmas per charge
397	disp3.SetCamContent(*cam, 5);
398	disp3.SetCamError( *cam, 6);
399	disp4.SetCamContent(*cam, 7);
400	disp4.SetCamError( *cam, 8);
401
402	// F-Factor Method
403	disp5.SetCamContent(*cam, 9);
404	disp5.SetCamError( *cam, 10);
405	disp6.SetCamContent(*cam, 11);
406	disp6.SetCamError( *cam, 12);
407	disp7.SetCamContent(*cam, 13);
408	disp7.SetCamError( *cam, 14);
409
410	// Quantum Efficiencies
411	disp8.SetCamContent (*qecam, 0 );
412	disp8.SetCamError (*qecam, 1 );
413	disp9.SetCamContent (*qecam, 2 );
414	disp9.SetCamError (*qecam, 3 );
415	disp10.SetCamContent(*qecam, 4 );
416	disp10.SetCamError (*qecam, 5 );
417	disp11.SetCamContent(*qecam, 6 );
418	disp11.SetCamError (*qecam, 7 );
419
420	// Valid flags
421	disp12.SetCamContent(*qecam, 8 );
422	disp13.SetCamContent(*qecam, 9 );
423	disp14.SetCamContent(*qecam, 10);
424	disp15.SetCamContent(*qecam, 11);
425
426	// Conversion Hi-Lo
427	disp16.SetCamContent(*cam, 25);
428	disp17.SetCamContent(*cam, 16);
429	disp17.SetCamError (*cam, 17);
430	disp18.SetCamContent(*cam, 18);
431	disp18.SetCamError (*cam, 19);
432
433	// Pickup and Blackout
434	disp19.SetCamContent(*cam, 21);
435	disp20.SetCamContent(*cam, 22);
436	disp21.SetCamContent(*cam, 23);
437	disp22.SetCamContent(*cam, 24);
438
439	// Pixels with defects
440	disp23.SetCamContent(*cam, 20);
441	disp24.SetCamContent(*badcam, 6);
442	disp25.SetCamContent(*badcam, 7);
443
444	// Oscillations
445	disp26.SetCamContent(*badcam, 10);
446	disp27.SetCamContent(*badcam, 11);
447
448	// Arrival Times
449	disp28.SetCamContent(*cam, 26);
450	disp28.SetCamError( *cam, 27);
451	disp29.SetCamContent(*cam, 27);
452
453	// RMS and Mean
454	disp36.SetCamContent(*cam,32);
455	disp36.SetCamError(*cam,33);
456
457	disp1.SetYTitle("Q [FADC cnts]");
458	disp2.SetYTitle("\\sigma_{Q} [FADC cnts]");
459
460	disp3.SetYTitle("\\sqrt{\\sigma^{2}_{Q} - RMS^{2}_{Ped}} [FADC cnts]");
461	disp4.SetYTitle("Red.Sigma/<Q> [1]");
462
463	disp5.SetYTitle("Photo-electons [1]");
464	disp6.SetYTitle("Phes/<Q> [FADC cnts^{-1}]");
465	disp7.SetYTitle("Total F-Factor [1]");
466
467	disp8.SetYTitle("QE [1]");
468	disp9.SetYTitle("QE [1]");
469	disp10.SetYTitle("QE [1]");
470	disp11.SetYTitle("QE [1]");
471
472	disp12.SetYTitle("[1]");
473	disp13.SetYTitle("[1]");
474	disp14.SetYTitle("[1]");
475	disp15.SetYTitle("[1]");
476	disp16.SetYTitle("[1]");
477
478	disp17.SetYTitle("<Q>(High)/<Q>(Low) [1]");
479	disp18.SetYTitle("\\sigma_{Q}(High)/\\sigma_{Q}(Low) [1]");
480
481	disp19.SetYTitle("[1]");
482	disp20.SetYTitle("[1]");
483	disp21.SetYTitle("[1]");
484	disp22.SetYTitle("[1]");
485	// disp23.SetYTitle("[1]");
486	// disp24.SetYTitle("[1]");
487	// disp25.SetYTitle("[1]");
488	disp26.SetYTitle("[1]");
489	disp27.SetYTitle("[1]");
490
491	disp28.SetYTitle("Mean Abs. Time [FADC sl.]");
492	disp29.SetYTitle("RMS Abs. Time [FADC sl.]");
493	disp35.SetYTitle("Conv.Factor [Ph/FADC cnts]");
494	disp36.SetYTitle("Charge RMS/<Q> [1]");
495	disp37.SetYTitle("Conv.Factor [Phe/FADC cnts]");
496
497	for (UInt_t i=0;i<geomcam.GetNumPixels();i++)
498	{
499
500	MCalibrationChargePix &pix = (MCalibrationChargePix&)(*cam) [i];
501	MCalibrationQEPix &qe = (MCalibrationQEPix&) (*qecam)[i];
502
503	if (!pix.IsFFactorMethodValid())
504	continue;
505
506	const Float_t convphe = pix.GetMeanConvFADC2Phe();
507	const Float_t quaeff = qe.GetQECascadesFFactor();
508
509	disp35.Fill(i,convphe/quaeff);
510	disp35.SetUsed(i);
511
512	disp37.Fill(i,convphe/quaeff*MCalibrationQEPix::gkDefaultAverageQE);
513	disp37.SetUsed(i);
514	}
515
516
517	if (IsRelTimes())
518	{
519	disp30.SetCamContent(*relcam,0);
520	disp30.SetCamError( *relcam,1);
521	disp31.SetCamContent(*relcam,2);
522	disp31.SetCamError( *relcam,3);
523	disp32.SetCamContent(*relcam,4);
524	disp33.SetCamContent(fBadPixels,20);
525	disp34.SetCamContent(fBadPixels,21);
526
527	disp30.SetYTitle("Time Offset [FADC units]");
528	disp31.SetYTitle("Timing resolution [FADC units]");
529	disp32.SetYTitle("P_{Time} [1]");
530	disp33.SetYTitle("[1]");
531	disp34.SetYTitle("[1]");
532	}
533
534	if (fDisplayType == kDataCheckDisplay)
535	{
536
537	TCanvas &c1 = fDisplay->AddTab("FitCharge");
538	c1.Divide(3, 3);
539
540	//
541	// MEAN CHARGES
542	//
543
544	c1.cd(1);
545	gPad->SetBorderMode(0);
546	gPad->SetTicks();
547	MHCamera obj1=(MHCamera)disp1.DrawCopy("hist");
548	//
549	// for the datacheck, fix the ranges!!
550	//
551	// obj1->SetMinimum(fChargeMin);
552	// obj1->SetMaximum(fChargeMax);
553	//
554	// Set the datacheck sizes:
555	//
556	FixDataCheckHist((TH1D*)obj1);
557	obj1->SetStats(kFALSE);
558	//
559	// set reference lines
560	//
561	// DisplayReferenceLines(obj1,0);
562
563	c1.cd(4);
564	gPad->SetBorderMode(0);
565	obj1->SetPrettyPalette();
566	obj1->Draw();
567
568	c1.cd(7);
569	gPad->SetBorderMode(0);
570	gPad->SetTicks();
571	TH1D obj2 = (TH1D)obj1->Projection(obj1->GetName());
572	obj2->Draw();
573	obj2->SetBit(kCanDelete);
574	obj2->Fit("gaus","Q");
575	TF1 *fun2 = obj2->GetFunction("gaus");
576	fun2->SetLineColor(kYellow);
577	gPad->Modified();
578	gPad->Update();
579	TPaveStats st = (TPaveStats)obj2->GetListOfFunctions()->FindObject("stats");
580	st->SetY1NDC(0.55);
581	st->SetY2NDC(0.89);
582	st->SetX1NDC(0.65);
583	st->SetX2NDC(0.99);
584	gPad->Modified();
585	gPad->Update();
586	//
587	// Set the datacheck sizes:
588	//
589	FixDataCheckHist(obj2);
590	obj2->SetStats(1);
591
592	//
593	// Display the outliers as dead and noisy pixels
594	//
595	DisplayOutliers(obj2,"low-ampl.","high-ampl.");
596	TLatex flattex;
597	flattex.SetTextSize(0.07);
598	const Double_t minl = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
599	const Double_t maxl = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
600	flattex.DrawLatex(minl+0.015*(maxl-minl),obj2->GetBinContent(obj2->GetMaximumBin())/1.35,
601	Form("Flatfield precision: %4.2f%%",
602	fun2->GetParameter(2)/fun2->GetParameter(1)*100.));
603
604	//
605	// RMS per Charge
606	//
607
608	c1.cd(2);
609	gPad->SetBorderMode(0);
610	gPad->SetTicks();
611	MHCamera obj3=(MHCamera)disp36.DrawCopy("hist");
612	//
613	// for the datacheck, fix the ranges!!
614	//
615	// obj3->SetMinimum(0.);
616	// obj3->SetMaximum(fChargeMax);
617	//
618	// Set the datacheck sizes:
619	//
620	FixDataCheckHist((TH1D*)obj3);
621	obj3->SetStats(kFALSE);
622	//
623	// set reference lines
624	//
625	// DisplayReferenceLines(obj3,0);
626
627	c1.cd(5);
628	gPad->SetBorderMode(0);
629	obj3->SetPrettyPalette();
630	obj3->Draw();
631
632	c1.cd(8);
633	gPad->SetBorderMode(0);
634	if (geomcam.InheritsFrom("MGeomCamMagic"))
635	DisplayDoubleProject(&disp36, "dead", "noisy");
636
637	//
638	// PHOTO ELECTRONS
639	//
640
641	c1.cd(3);
642	gPad->SetBorderMode(0);
643	gPad->SetTicks();
644	MHCamera obj4=(MHCamera)disp5.DrawCopy("hist");
645	//
646	// for the datacheck, fix the ranges!!
647	//
648	// obj3->SetMinimum(fChargeMin);
649	// obj3->SetMaximum(fChargeMax);
650	//
651	// Set the datacheck sizes:
652	//
653	FixDataCheckHist((TH1D*)obj4);
654	obj4->SetStats(kFALSE);
655	//
656	// set reference lines
657	//
658	// DisplayReferenceLines(obj3,0);
659
660	c1.cd(6);
661	gPad->SetBorderMode(0);
662	obj4->SetPrettyPalette();
663	obj4->Draw();
664
665	c1.cd(9);
666	gPad->SetBorderMode(0);
667	if (geomcam.InheritsFrom("MGeomCamMagic"))
668	DisplayDoubleProject(&disp5, "dead", "noisy");
669
670	//
671	// CONVERSION FACTORS
672	//
673	TCanvas &c2 = fDisplay->AddTab("Conversion");
674	c2.Divide(3,3);
675
676	c2.cd(1);
677	gPad->SetBorderMode(0);
678	gPad->SetTicks();
679	MHCamera obj5=(MHCamera)disp6.DrawCopy("hist");
680	//
681	// for the datacheck, fix the ranges!!
682	//
683	obj5->SetMinimum(fConvFADC2PheMin);
684	obj5->SetMaximum(fConvFADC2PheMax);
685	//
686	// Set the datacheck sizes:
687	//
688	FixDataCheckHist((TH1D*)obj5);
689	obj5->SetStats(kFALSE);
690	//
691	// set reference lines
692	//
693	DisplayReferenceLines(obj5,2);
694
695	c2.cd(4);
696	gPad->SetBorderMode(0);
697	obj5->SetPrettyPalette();
698	obj5->Draw();
699
700	c2.cd(7);
701	gPad->SetBorderMode(0);
702	if (geomcam.InheritsFrom("MGeomCamMagic"))
703	DisplayDoubleProject(&disp6, "noisy", "dead");
704
705	//
706	// QUANTUM EFFICIENCY
707	//
708	c2.cd(2);
709	gPad->SetBorderMode(0);
710	gPad->SetTicks();
711	MHCamera obj6=(MHCamera)disp8.DrawCopy("hist");
712	//
713	// for the datacheck, fix the ranges!!
714	//
715	obj6->SetMinimum(fQEMin);
716	obj6->SetMaximum(fQEMax);
717	//
718	// Set the datacheck sizes:
719	//
720	FixDataCheckHist((TH1D*)obj6);
721	obj6->SetStats(kFALSE);
722	//
723	// set reference lines
724	//
725	DisplayReferenceLines(obj6,0);
726
727	c2.cd(5);
728	gPad->SetBorderMode(0);
729	obj6->SetPrettyPalette();
730	obj6->Draw();
731
732	c2.cd(8);
733	gPad->SetBorderMode(0);
734	if (geomcam.InheritsFrom("MGeomCamMagic"))
735	DisplayDoubleProject(&disp8, "noisy", "dead");
736
737	//
738	// CONVERSION FADC TO PHOTONS
739	//
740
741	c2.cd(3);
742	gPad->SetBorderMode(0);
743	gPad->SetTicks();
744	MHCamera obj7=(MHCamera)disp37.DrawCopy("hist");
745	//
746	// for the datacheck, fix the ranges!!
747	//
748	obj7->SetMinimum(fConvFADC2PheMin);
749	obj7->SetMaximum(fConvFADC2PheMax);
750	//
751	// Set the datacheck sizes:
752	//
753	FixDataCheckHist((TH1D*)obj7);
754	obj7->SetStats(kFALSE);
755	//
756	// set reference lines
757	//
758	DisplayReferenceLines(obj7,1);
759
760	c2.cd(6);
761	gPad->SetBorderMode(0);
762	obj7->SetPrettyPalette();
763	obj7->Draw();
764	c2.cd(9);
765	gPad->SetBorderMode(0);
766	if (geomcam.InheritsFrom("MGeomCamMagic"))
767	DisplayDoubleProject(&disp37, "noisy", "dead");
768
769	//
770	// ARRIVAL TIMES
771	//
772	TCanvas &c3 = fDisplay->AddTab("AbsTimes");
773	c3.Divide(2,3);
774
775	c3.cd(1);
776	gPad->SetBorderMode(0);
777	gPad->SetTicks();
778	MHCamera obj10=(MHCamera)disp28.DrawCopy("hist");
779	//
780	// for the datacheck, fix the ranges!!
781	//
782	obj10->SetMinimum(fArrivalTimeMin);
783	obj10->SetMaximum(fArrivalTimeMax);
784	//
785	// Set the datacheck sizes:
786	//
787	FixDataCheckHist((TH1D*)obj10);
788	obj10->SetStats(kFALSE);
789	//
790	// set reference lines
791	//
792	DisplayReferenceLines(obj10,3);
793
794	c3.cd(3);
795	gPad->SetBorderMode(0);
796	obj10->SetPrettyPalette();
797	obj10->Draw();
798
799	c3.cd(5);
800	gPad->SetBorderMode(0);
801	if (geomcam.InheritsFrom("MGeomCamMagic"))
802	DisplayDoubleProject(&disp28, "early", "late");
803
804	//
805	// ARRIVAL TIMES JITTER
806	//
807	c3.cd(2);
808	gPad->SetBorderMode(0);
809	gPad->SetTicks();
810	MHCamera obj11=(MHCamera)disp29.DrawCopy("hist");
811	//
812	// for the datacheck, fix the ranges!!
813	//
814	// obj11->SetMinimum(fArrivalTimeMin);
815	// obj11->SetMaximum(fArrivalTimeMax);
816	//
817	// Set the datacheck sizes:
818	//
819	FixDataCheckHist((TH1D*)obj11);
820	obj11->SetStats(kFALSE);
821	//
822	// set reference lines
823	//
824	DisplayReferenceLines(obj11,4);
825
826	c3.cd(4);
827	gPad->SetBorderMode(0);
828	obj11->SetPrettyPalette();
829	obj11->Draw();
830
831	c3.cd(6);
832	gPad->SetBorderMode(0);
833	if (geomcam.InheritsFrom("MGeomCamMagic"))
834	DisplayDoubleProject(&disp29, "", "jittering");
835
836	//
837	// UNSUITABLE PIXELS
838	//
839	TCanvas &c4 = fDisplay->AddTab("Defect");
840	c4.Divide(2,2, 0.005, 0.005);
841
842	c4.cd(1);
843	gPad->SetBorderMode(0);
844	gPad->SetTicks();
845	MHCamera obj8=(MHCamera)disp24.DrawCopy("hist");
846	//
847	// for the datacheck, fix the ranges!!
848	//
849	const Double_t max = 11.;
850	obj8->SetMinimum(0.);
851	obj8->SetMaximum(max);
852	//
853	// Set the datacheck sizes:
854	//
855	FixDataCheckHist((TH1D*)obj8);
856	obj8->SetStats(kFALSE);
857
858	gStyle->SetPalette(1);
859	const Int_t numcol = gStyle->GetNumberOfColors()-3;
860
861	TPaveText *pave = new TPaveText(0.05,0.02,0.975,0.99);
862	pave->SetBit(kCanDelete);
863	pave->ConvertNDCtoPad();
864	pave->SetTextSize(0.045);
865	pave->AddText(" ");
866	TText *t1 = pave->AddText(Form("Signal smaller 4.5 Pedestal RMS: %3i pixels",
867	CountBadPixels(&disp24,1)));
868	t1->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol)));
869	t1->SetTextAlign(12);
870	TText *t4 = pave->AddText(Form("Low Gain Saturation: %3i pixels",
871	CountBadPixels(&disp24,2)));
872	t4->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol)));
873	t4->SetTextAlign(12);
874	TText *t5 = pave->AddText(Form("Mean Arr. Time In First Extraction Bin: %3i pixels",
875	CountBadPixels(&disp24,3)));
876	t5->SetTextColor(gStyle->GetColorPalette(Int_t(3./max*numcol)));
877	t5->SetTextAlign(12);
878	TText *t6 = pave->AddText(Form("Mean Arr. Time In Last 2 Extraction Bins: %3i pixels",
879	CountBadPixels(&disp24,4)));
880	t6->SetTextColor(gStyle->GetColorPalette(Int_t(4./max*numcol)));
881	t6->SetTextAlign(12);
882	TText *t10= pave->AddText(Form("High-Gain Histogram Overflow: %3i pixels",
883	CountBadPixels(&disp24,5 )));
884	t10->SetTextColor(gStyle->GetColorPalette(Int_t(5./max*numcol)));
885	t10->SetTextAlign(12);
886	TText *t11= pave->AddText(Form("Low-Gain Histogram Overflow: %3i pixels",
887	CountBadPixels(&disp24,6 )));
888	t11->SetTextColor(gStyle->GetColorPalette(Int_t(6./max*numcol)));
889	t11->SetTextAlign(12);
890	TText *t12= pave->AddText(Form("Presumably dead from Ped. Rms: %3i pixels",
891	CountBadPixels(&disp24,7 )));
892	t12->SetTextColor(gStyle->GetColorPalette(Int_t(7./max*numcol)));
893	t12->SetTextAlign(12);
894	TText *t13= pave->AddText(Form("Fluctuating Pulse Arrival Times: %3i pixels",
895	CountBadPixels(&disp24,8 )));
896	t13->SetTextColor(gStyle->GetColorPalette(Int_t(8./max*numcol)));
897	t13->SetTextAlign(12);
898	TText *t17 = pave->AddText(Form("Deviating Number of Photo-electrons: %3i pixels",
899	CountBadPixels(&disp24,9 )));
900	t17->SetTextColor(gStyle->GetColorPalette(Int_t(9./max*numcol)));
901	t17->SetTextAlign(12);
902	TText *t15= pave->AddText(Form("Too many Low-Gain Blackout Events: %3i pixels",
903	CountBadPixels(&disp24,10 )));
904	t15->SetTextColor(gStyle->GetColorPalette(Int_t(10./max*numcol)));
905	t15->SetTextAlign(12);
906	TText *t14= pave->AddText(Form("Previously Excluded: %3i pixels",
907	CountBadPixels(&disp24,11)));
908	t14->SetTextColor(gStyle->GetColorPalette(Int_t(11./max*numcol)));
909	t14->SetTextAlign(12);
910	pave->Draw();
911
912	c4.cd(3);
913	gPad->SetBorderMode(0);
914	obj8->Draw();
915	obj8->SetPrettyPalette();
916
917	//
918	// UNRELIABLE PIXELS
919	//
920
921	c4.cd(2);
922	gPad->SetBorderMode(0);
923	gPad->SetTicks();
924	MHCamera obj9=(MHCamera)disp25.DrawCopy("hist");
925	//
926	// for the datacheck, fix the ranges!!
927	//
928	const Double_t max2 = 9.;
929	obj9->SetMinimum(0.);
930	obj9->SetMaximum(max2);
931	//
932	// Set the datacheck sizes:
933	//
934	FixDataCheckHist((TH1D*)obj9);
935	obj9->SetStats(kFALSE);
936
937	gStyle->SetPalette(1);
938
939	TPaveText *pave2 = new TPaveText(0.025,0.02,0.95,0.99);
940	pave2->SetBit(kCanDelete);
941	pave2->ConvertNDCtoPad();
942	pave2->SetTextSize(0.05);
943	pave2->AddText(" ");
944	TText *t3 = pave2->AddText(Form("Signal Sigma smaller Pedestal RMS: %3i pixels",
945	CountBadPixels(&disp25,1)));
946	t3->SetTextColor(gStyle->GetColorPalette(Int_t(1./max2*numcol)));
947	t3->SetTextAlign(12);
948	TText *tt1 = pave2->AddText(Form("High Gain Signals could not be fitted: %3i pixels",
949	CountBadPixels(&disp25,3)));
950	tt1->SetTextColor(gStyle->GetColorPalette(Int_t(3./max2*numcol)));
951	tt1->SetTextAlign(12);
952	TText *tt2 = pave2->AddText(Form("Low Gain Signals could not be fitted: %3i pixels",
953	CountBadPixels(&disp25,4)));
954	tt2->SetTextColor(gStyle->GetColorPalette(Int_t(4./max2*numcol)));
955	tt2->SetTextAlign(12);
956	TText *tt3 = pave2->AddText(Form("Relative Arr. Times could not be fitted: %3i pixels",
957	CountBadPixels(&disp25,5)));
958	tt3->SetTextColor(gStyle->GetColorPalette(Int_t(5./max2*numcol)));
959	tt3->SetTextAlign(12);
960	TText *tt4 = pave2->AddText(Form("High Gain Signals Oscillation: %3i pixels",
961	CountBadPixels(&disp25,6)));
962	tt4->SetTextColor(gStyle->GetColorPalette(Int_t(6./max2*numcol)));
963	tt4->SetTextAlign(12);
964	TText *tt5 = pave2->AddText(Form("Low Gain Signals Oscillation: %3i pixels",
965	CountBadPixels(&disp25,7)));
966	tt5->SetTextColor(gStyle->GetColorPalette(Int_t(7./max2*numcol)));
967	tt5->SetTextAlign(12);
968	TText *tt6 = pave2->AddText(Form("Relative Arr. Times Oscillation: %3i pixels",
969	CountBadPixels(&disp25,8)));
970	tt6->SetTextColor(gStyle->GetColorPalette(Int_t(8./max2*numcol)));
971	tt6->SetTextAlign(12);
972	TText *tt8 = pave2->AddText(Form("Deviating global F-Factor: %3i pixels",
973	CountBadPixels(&disp25,9)));
974	tt8->SetTextColor(gStyle->GetColorPalette(Int_t(9./max2*numcol)));
975	tt8->SetTextAlign(12);
976	pave2->Draw();
977
978	c4.cd(4);
979	gPad->SetBorderMode(0);
980	obj9->SetPrettyPalette();
981	obj9->Draw();
982
983	if (IsRelTimes())
984	{
985	TCanvas &c5 = fDisplay->AddTab("RelTimes");
986	c5.Divide(2,3);
987
988	//
989	// MEAN REL. ARR. TIMES
990	//
991	c5.cd(1);
992	gPad->SetBorderMode(0);
993	gPad->SetTicks();
994	MHCamera obj10=(MHCamera)disp30.DrawCopy("hist");
995	//
996	// for the datacheck, fix the ranges!!
997	//
998	obj10->SetMinimum(fTimeOffsetMin);
999	obj10->SetMaximum(fTimeOffsetMax);
1000	//
1001	// Set the datacheck sizes:
1002	//
1003	FixDataCheckHist((TH1D*)obj10);
1004	obj10->SetStats(kFALSE);
1005	//
1006	// set reference lines
1007	//
1008	DisplayReferenceLines(obj10,5);
1009
1010	c5.cd(3);
1011	gPad->SetBorderMode(0);
1012	obj10->SetPrettyPalette();
1013	obj10->Draw();
1014
1015	c5.cd(5);
1016	gPad->SetBorderMode(0);
1017	if (geomcam.InheritsFrom("MGeomCamMagic"))
1018	DisplayDoubleProject(&disp30, "early", "late");
1019
1020	//
1021	// JITTER Rel. Arr. Times
1022	//
1023	c5.cd(2);
1024	gPad->SetBorderMode(0);
1025	gPad->SetTicks();
1026	MHCamera obj11=(MHCamera)disp31.DrawCopy("hist");
1027	//
1028	// for the datacheck, fix the ranges!!
1029	//
1030	obj11->SetMinimum(fTimeResolutionMin);
1031	obj11->SetMaximum(fTimeResolutionMax);
1032	//
1033	// Set the datacheck sizes:
1034	//
1035	FixDataCheckHist((TH1D*)obj11);
1036	obj11->SetStats(kFALSE);
1037	//
1038	// set reference lines
1039	//
1040	DisplayReferenceLines(obj11,6);
1041
1042	c5.cd(4);
1043	gPad->SetBorderMode(0);
1044	obj11->SetPrettyPalette();
1045	obj11->Draw();
1046
1047	c5.cd(6);
1048	gPad->SetBorderMode(0);
1049	if (geomcam.InheritsFrom("MGeomCamMagic"))
1050	DisplayDoubleProject(&disp31, "too stable", "jittering");
1051
1052	}
1053	return;
1054	}
1055
1056	if (fDisplayType == kNormalDisplay)
1057	{
1058
1059	// Charges
1060	TCanvas &c11 = fDisplay->AddTab("FitCharge");
1061	c11.Divide(2, 4);
1062
1063	disp1.CamDraw(c11, 1, 2, 5, 1);
1064	disp2.CamDraw(c11, 2, 2, 5, 1);
1065
1066	// Reduced Sigmas
1067	TCanvas &c12 = fDisplay->AddTab("RedSigma");
1068	c12.Divide(2,4);
1069
1070	disp3.CamDraw(c12, 1, 2, 5, 1);
1071	disp4.CamDraw(c12, 2, 2, 5, 1);
1072
1073	// F-Factor
1074	TCanvas &c13 = fDisplay->AddTab("Phe's");
1075	c13.Divide(3,4);
1076
1077	disp5.CamDraw(c13, 1, 3, 5, 1);
1078	disp6.CamDraw(c13, 2, 3, 5, 1);
1079	disp7.CamDraw(c13, 3, 3, 5, 1);
1080
1081	// QE's
1082	TCanvas &c14 = fDisplay->AddTab("QE's");
1083	c14.Divide(4,4);
1084
1085	disp8.CamDraw(c14, 1, 4, 5, 1);
1086	disp9.CamDraw(c14, 2, 4, 5, 1);
1087	disp10.CamDraw(c14, 3, 4, 5, 1);
1088	disp11.CamDraw(c14, 4, 4, 5, 1);
1089
1090	// Defects
1091	TCanvas &c15 = fDisplay->AddTab("Defect");
1092	// c15.Divide(5,2);
1093	c15.Divide(4,2);
1094
1095	/*
1096	disp23.CamDraw(c15, 1, 5, 0);
1097	disp24.CamDraw(c15, 2, 5, 0);
1098	disp25.CamDraw(c15, 3, 5, 0);
1099	disp26.CamDraw(c15, 4, 5, 0);
1100	disp27.CamDraw(c15, 5, 5, 0);
1101	*/
1102	disp24.CamDraw(c15, 1, 4, 0);
1103	disp25.CamDraw(c15, 2, 4, 0);
1104	disp26.CamDraw(c15, 3, 4, 0);
1105	disp27.CamDraw(c15, 4, 4, 0);
1106
1107	// Abs. Times
1108	TCanvas &c16 = fDisplay->AddTab("AbsTimes");
1109	c16.Divide(2,3);
1110
1111	disp28.CamDraw(c16, 1, 2, 5);
1112	disp29.CamDraw(c16, 2, 2, 5);
1113
1114	if (IsRelTimes())
1115	{
1116	// Rel. Times
1117	TCanvas &c17 = fDisplay->AddTab("RelTimes");
1118	c17.Divide(2,4);
1119
1120	disp30.CamDraw(c17, 1, 2, 5, 1);
1121	disp31.CamDraw(c17, 2, 2, 5, 1);
1122	}
1123
1124	return;
1125	}
1126
1127	if (fDisplayType == kFullDisplay)
1128	{
1129	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationChargeCam");
1130
1131	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1132	{
1133	cam->GetAverageHiGainSector(sector).DrawClone("all");
1134	cam->GetAverageLoGainSector(sector).DrawClone("all");
1135	}
1136
1137	// Charges
1138	TCanvas &c21 = fDisplay->AddTab("FitCharge");
1139	c21.Divide(2, 4);
1140
1141	disp1.CamDraw(c21, 1, 2, 2, 1);
1142	disp2.CamDraw(c21, 2, 2, 2, 1);
1143
1144	// Reduced Sigmas
1145	TCanvas &c23 = fDisplay->AddTab("RedSigma");
1146	c23.Divide(2,4);
1147
1148	disp3.CamDraw(c23, 1, 2, 2, 1);
1149	disp4.CamDraw(c23, 2, 2, 2, 1);
1150
1151	// F-Factor
1152	TCanvas &c24 = fDisplay->AddTab("Phe's");
1153	c24.Divide(3,5);
1154
1155	disp5.CamDraw(c24, 1, 3, 2, 1, 1);
1156	disp6.CamDraw(c24, 2, 3, 2, 1, 1);
1157	disp7.CamDraw(c24, 3, 3, 2, 1, 1);
1158
1159	// QE's
1160	TCanvas &c25 = fDisplay->AddTab("QE's");
1161	c25.Divide(4,5);
1162
1163	disp8.CamDraw(c25, 1, 4, 2, 1, 1);
1164	disp9.CamDraw(c25, 2, 4, 2, 1, 1);
1165	disp10.CamDraw(c25, 3, 4, 2, 1, 1);
1166	disp11.CamDraw(c25, 4, 4, 2, 1, 1);
1167
1168	// Validity
1169	TCanvas &c26 = fDisplay->AddTab("Valid");
1170	c26.Divide(4,2);
1171
1172	disp12.CamDraw(c26, 1, 4, 0);
1173	disp13.CamDraw(c26, 2, 4, 0);
1174	disp14.CamDraw(c26, 3, 4, 0);
1175	disp15.CamDraw(c26, 4, 4, 0);
1176
1177	// Other info
1178	TCanvas &c27 = fDisplay->AddTab("HiLoGain");
1179	c27.Divide(3,3);
1180
1181	disp16.CamDraw(c27, 1, 3, 0);
1182	disp17.CamDraw(c27, 2, 3, 1);
1183	disp18.CamDraw(c27, 3, 3, 1);
1184
1185	// Pickup
1186	TCanvas &c28 = fDisplay->AddTab("Pickup");
1187	c28.Divide(4,2);
1188
1189	disp19.CamDraw(c28, 1, 4, 0);
1190	disp20.CamDraw(c28, 2, 4, 0);
1191	disp21.CamDraw(c28, 3, 4, 0);
1192	disp22.CamDraw(c28, 4, 4, 0);
1193
1194	// Defects
1195	TCanvas &c29 = fDisplay->AddTab("Defect");
1196	// c29.Divide(5,2);
1197	c29.Divide(4,2);
1198
1199	disp24.CamDraw(c29, 1, 4, 0);
1200	disp25.CamDraw(c29, 2, 4, 0);
1201	disp26.CamDraw(c29, 3, 4, 0);
1202	disp27.CamDraw(c29, 4, 4, 0);
1203
1204	// Abs. Times
1205	TCanvas &c30 = fDisplay->AddTab("AbsTimes");
1206	c30.Divide(2,3);
1207
1208	disp28.CamDraw(c30, 1, 2, 2);
1209	disp29.CamDraw(c30, 2, 2, 1);
1210
1211	if (IsRelTimes())
1212	{
1213	// Rel. Times
1214	TCanvas &c31 = fDisplay->AddTab("RelTimes");
1215	c31.Divide(3,5);
1216
1217	disp30.CamDraw(c31, 1, 3, 2, 1, 1);
1218	disp31.CamDraw(c31, 2, 3, 2, 1, 1);
1219	disp32.CamDraw(c31, 3, 3, 4, 1, 1);
1220
1221	// Time Defects
1222	TCanvas &c32 = fDisplay->AddTab("DefTime");
1223	c32.Divide(2,2);
1224
1225	disp33.CamDraw(c32, 1, 2, 0);
1226	disp34.CamDraw(c32, 2, 2, 0);
1227
1228	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationRelTimeCam");
1229
1230	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1231	{
1232	cam->GetAverageHiGainSector(sector).DrawClone("fourierevents");
1233	cam->GetAverageLoGainSector(sector).DrawClone("fourierevents");
1234	}
1235
1236	}
1237
1238	return;
1239	}
1240	}
1241
1242
1243	void MJCalibration::DisplayReferenceLines(MHCamera *cam, const Int_t what) const
1244	{
1245
1246	const MGeomCam *geom = cam->GetGeometry();
1247
1248	Double_t x = geom->InheritsFrom("MGeomCamMagic") ? 397 : cam->GetNbinsX() ;
1249
1250	TLine line;
1251	line.SetLineStyle(kDashed);
1252	line.SetLineWidth(3);
1253	line.SetLineColor(kBlue);
1254
1255	TLine *l1 = NULL;
1256
1257	switch (what)
1258	{
1259	case 0:
1260	l1 = line.DrawLine(0, fRefQEInner, x, fRefQEInner);
1261	break;
1262	case 1:
1263	l1 = line.DrawLine(0, fRefConvFADC2PheInner, x, fRefConvFADC2PheInner);
1264	break;
1265	case 2:
1266	l1 = line.DrawLine(0, fRefFADC2PheInner, x, fRefFADC2PheInner );
1267	break;
1268	case 3:
1269	l1 = line.DrawLine(0, fRefArrivalTimeInner, x, fRefArrivalTimeInner );
1270	break;
1271	case 4:
1272	l1 = line.DrawLine(0, fRefArrivalTimeRmsInner, x, fRefArrivalTimeRmsInner );
1273	break;
1274	case 5:
1275	l1 = line.DrawLine(0, fRefTimeOffsetInner, x, fRefTimeOffsetInner );
1276	break;
1277	case 6:
1278	l1 = line.DrawLine(0, fRefTimeResolutionInner, x, fRefTimeResolutionInner );
1279	break;
1280	default:
1281	break;
1282	}
1283
1284	if (geom->InheritsFrom("MGeomCamMagic"))
1285	{
1286	const Double_t x2 = cam->GetNbinsX();
1287
1288	switch (what)
1289	{
1290	case 0:
1291	line.DrawLine(x2, fRefQEOuter, 398, fRefQEOuter);
1292	break;
1293	case 1:
1294	line.DrawLine(x2, fRefConvFADC2PheOuter, 398, fRefConvFADC2PheOuter );
1295	break;
1296	case 2:
1297	line.DrawLine(x2, fRefFADC2PheOuter, 398, fRefFADC2PheOuter);
1298	break;
1299	case 3:
1300	line.DrawLine(x2, fRefArrivalTimeOuter, 398, fRefArrivalTimeOuter);
1301	break;
1302	case 4:
1303	line.DrawLine(x2, fRefArrivalTimeRmsOuter, 398, fRefArrivalTimeRmsOuter);
1304	break;
1305	case 5:
1306	line.DrawLine(x2, fRefTimeOffsetOuter, 398, fRefTimeOffsetOuter);
1307	break;
1308	case 6:
1309	line.DrawLine(x2, fRefTimeResolutionOuter, 398, fRefTimeResolutionOuter);
1310	break;
1311	default:
1312	break;
1313	}
1314	}
1315
1316	TLegend *leg = new TLegend(0.6,0.85,0.9 ,0.95);
1317	leg->SetBit(kCanDelete);
1318	leg->AddEntry(l1, "Reference","l");
1319	leg->Draw();
1320	}
1321
1322	void MJCalibration::DisplayOutliers(TH1D hist, const char whatsmall, const char* whatbig) const
1323	{
1324
1325	const Int_t kNotDraw = 1<<9;
1326	TF1 *f = hist->GetFunction("gaus");
1327	f->ResetBit(kNotDraw);
1328
1329	const Float_t mean = f->GetParameter(1);
1330	const Float_t lolim = mean - 4.0*f->GetParameter(2);
1331	const Float_t uplim = mean + 4.0*f->GetParameter(2);
1332	const Stat_t dead = hist->Integral(0,hist->FindBin(lolim)-1);
1333	const Stat_t noisy = hist->Integral(hist->FindBin(uplim)+1,hist->GetNbinsX()+1);
1334
1335	const Double_t max = hist->GetBinContent(hist->GetMaximumBin());
1336
1337	const Double_t minl = hist->GetBinCenter(hist->GetXaxis()->GetFirst());
1338	const Double_t maxl = hist->GetBinCenter(hist->GetXaxis()->GetLast());
1339
1340	TLatex deadtex;
1341	deadtex.SetTextSize(0.07);
1342	deadtex.DrawLatex(minl+0.015*(maxl-minl),max/1.1,
1343	Form("%3i %s pixels",(Int_t)dead,whatsmall));
1344
1345	TLatex noisytex;
1346	noisytex.SetTextSize(0.07);
1347	noisytex.DrawLatex(minl+0.015*(maxl-minl),max/1.2,
1348	Form("%3i %s pixels",(Int_t)noisy,whatbig));
1349
1350	}
1351
1352	void MJCalibration::FixDataCheckHist(TH1D *hist) const
1353	{
1354
1355	hist->SetDirectory(NULL);
1356
1357	//
1358	// set the labels bigger
1359	//
1360	TAxis *xaxe = hist->GetXaxis();
1361	TAxis *yaxe = hist->GetYaxis();
1362
1363	xaxe->CenterTitle();
1364	yaxe->CenterTitle();
1365	xaxe->SetTitleSize(0.06);
1366	yaxe->SetTitleSize(0.06);
1367	xaxe->SetTitleOffset(0.8);
1368	yaxe->SetTitleOffset(0.85);
1369	xaxe->SetLabelSize(0.05);
1370	yaxe->SetLabelSize(0.05);
1371
1372	}
1373
1374	const Int_t MJCalibration::CountBadPixels(MHCamera *cam, const Int_t what) const
1375	{
1376	Int_t cnt = 0;
1377
1378	for (UInt_t pix=0; pix<cam->GetNumPixels(); pix++)
1379	if (TMath::Nint(cam->GetPixContent(pix)) == what)
1380	cnt++;
1381
1382	return cnt;
1383	}
1384
1385	// --------------------------------------------------------------------------
1386	//
1387	// Retrieve the output file written by WriteResult()
1388	//
1389	const char* MJCalibration::GetOutputFileName() const
1390	{
1391	return Form("calib%08d.root", fSequence.GetSequence());
1392	}
1393
1394	// --------------------------------------------------------------------------
1395	//
1396	// Read the following values from resource file:
1397	//
1398	// ConvFADC2PheMin
1399	// ConvFADC2PheMax
1400	// ConvFADC2PhotMin
1401	// ConvFADC2PhotMax
1402	//
1403	// QEMin
1404	// QEMax
1405	//
1406	// ArrivalTimeMin
1407	// ArrivalTimeMax
1408	//
1409	// TimeOffsetMin
1410	// TimeOffsetMax
1411	// TimeResolutionMin
1412	// TimeResolutionMax
1413	//
1414	// RefConvFADC2PheInner
1415	// RefConvFADC2PheOuter
1416	// RefConvFADC2PhotInner
1417	// RefConvFADC2PhotOuter
1418	//
1419	// RefQEInner
1420	// RefQEOuter
1421	//
1422	// RefArrivalTimeInner
1423	// RefArrivalTimeOuter
1424	// RefArrivalTimeRmsInner
1425	// RefArrivalTimeRmsOuter
1426	//
1427	// RefTimeOffsetInner
1428	// RefTimeOffsetOuter
1429	// RefTimeResolutionInner
1430	// RefTimeResolutionOuter
1431	//
1432	void MJCalibration::ReadReferenceFile()
1433	{
1434	TEnv refenv(fReferenceFile);
1435
1436	fConvFADC2PheMin = refenv.GetValue("ConvFADC2PheMin",fConvFADC2PheMin);
1437	fConvFADC2PheMax = refenv.GetValue("ConvFADC2PheMax",fConvFADC2PheMax);
1438	fConvFADC2PhotMin = refenv.GetValue("ConvFADC2PhotMin",fConvFADC2PhotMin);
1439	fConvFADC2PhotMax = refenv.GetValue("ConvFADC2PhotMax",fConvFADC2PhotMax);
1440	fQEMin = refenv.GetValue("QEMin",fQEMin);
1441	fQEMax = refenv.GetValue("QEMax",fQEMax);
1442	fArrivalTimeMin = refenv.GetValue("ArrivalTimeMin",fArrivalTimeMin);
1443	fArrivalTimeMax = refenv.GetValue("ArrivalTimeMax",fArrivalTimeMax);
1444	fTimeOffsetMin = refenv.GetValue("TimeOffsetMin",fTimeOffsetMin);
1445	fTimeOffsetMax = refenv.GetValue("TimeOffsetMax",fTimeOffsetMax);
1446	fTimeResolutionMin = refenv.GetValue("TimeResolutionMin",fTimeResolutionMin);
1447	fTimeResolutionMax = refenv.GetValue("TimeResolutionMax",fTimeResolutionMax);
1448
1449	fRefFADC2PheInner = refenv.GetValue("RefFADC2PheInner",fRefFADC2PheInner);
1450	fRefFADC2PheOuter = refenv.GetValue("RefFADC2PheOuter",fRefFADC2PheOuter);
1451	fRefConvFADC2PhotInner = refenv.GetValue("RefConvFADC2PhotInner",fRefConvFADC2PhotInner);
1452	fRefConvFADC2PhotOuter = refenv.GetValue("RefConvFADC2PhotOuter",fRefConvFADC2PhotOuter);
1453	fRefConvFADC2PheInner = refenv.GetValue("RefConvFADC2PheInner",fRefConvFADC2PheInner);
1454	fRefConvFADC2PheOuter = refenv.GetValue("RefConvFADC2PheOuter",fRefConvFADC2PheOuter);
1455	fRefQEInner = refenv.GetValue("RefQEInner",fRefQEInner);
1456	fRefQEOuter = refenv.GetValue("RefQEOuter",fRefQEOuter);
1457	fRefArrivalTimeInner = refenv.GetValue("RefArrivalTimeInner",fRefArrivalTimeInner);
1458	fRefArrivalTimeOuter = refenv.GetValue("RefArrivalTimeOuter",fRefArrivalTimeOuter);
1459	fRefArrivalTimeRmsInner = refenv.GetValue("RefArrivalTimeRmsInner",fRefArrivalTimeRmsInner);
1460	fRefArrivalTimeRmsOuter = refenv.GetValue("RefArrivalTimeRmsOuter",fRefArrivalTimeRmsOuter);
1461	fRefTimeOffsetInner = refenv.GetValue("RefTimeOffsetInner",fRefTimeOffsetInner);
1462	fRefTimeOffsetOuter = refenv.GetValue("RefTimeOffsetOuter",fRefTimeOffsetOuter);
1463	fRefTimeResolutionInner = refenv.GetValue("RefTimeResolutionInner",fRefTimeResolutionInner);
1464	fRefTimeResolutionOuter = refenv.GetValue("RefTimeResolutionOuter",fRefTimeResolutionOuter);
1465	}
1466
1467	// --------------------------------------------------------------------------
1468	//
1469	// Read the following values from resource file:
1470	//
1471	// MCalibrationHiLoCam
1472	//
1473	Bool_t MJCalibration::ReadHiLoCalibFile()
1474	{
1475
1476	if (!fIsHiLoCalibration)
1477	return kTRUE;
1478
1479	TFile file(fHiLoCalibFile,"READ");
1480	if (!file.IsOpen())
1481	{
1482	*fLog << err << "ERROR - Couldn't open file " << fHiLoCalibFile << " for reading... abort." << endl;
1483	return kFALSE;
1484	}
1485
1486	MCalibrationHiLoCam hilocam;
1487	if (hilocam.Read()<=0)
1488	{
1489	*fLog << err << "Unable to read MCalibrationHiLoCam from " << fHiLoCalibFile << "... abort." << endl;
1490	return kFALSE;
1491	}
1492	if (hilocam.GetSize() < 1)
1493	{
1494	*fLog << err << "MCalibationHiLoCam is un-initialized in file " << fHiLoCalibFile << "... abort." << endl;
1495	return kFALSE;
1496	}
1497
1498	*fLog << all << "Hi-/Lo-Gain intercalibration constants read from " << fHiLoCalibFile << endl << endl;
1499
1500	if (fCalibrationCam.GetSize() < 1)
1501	fCalibrationCam.InitSize(hilocam.GetSize());
1502
1503	if (fBadPixels.GetSize() < 1)
1504	fBadPixels.InitSize(hilocam.GetSize());
1505
1506	if (fCalibrationCam.GetSize() != hilocam.GetSize())
1507	{
1508	*fLog << err << "Size mismatch MCalibationHiLoCam and MCalibrationChargeCam.. abort." << endl;
1509	return kFALSE;
1510	}
1511
1512	for (Int_t i=0;i<hilocam.GetSize();i++)
1513	{
1514	const MCalibrationHiLoPix &pix = (MCalibrationHiLoPix&)hilocam[i];
1515
1516	const Float_t ratio = pix.GetHiLoChargeRatio();
1517	const Float_t raterr = pix.GetHiLoChargeRatioErr();
1518	const Float_t sigma = pix.GetHiLoChargeRatioSigma();
1519
1520	if (ratio < 0.)
1521	{
1522	fBadPixels[i].SetUncalibrated(MBadPixelsPix::kConversionHiLoNotValid);
1523	continue;
1524	}
1525
1526	MCalibrationChargePix &cpix = (MCalibrationChargePix&)fCalibrationCam[i];
1527
1528	cpix.SetConversionHiLo(ratio);
1529	cpix.SetConversionHiLoErr(raterr);
1530	cpix.SetConversionHiLoSigma(sigma);
1531	}
1532
1533	return kTRUE;
1534	}
1535
1536	// --------------------------------------------------------------------------
1537	//
1538	// MJCalibration allows to setup several option by a resource file:
1539	// MJCalibration.Display: full, datacheck, normal
1540	// MJCalibration.RelTimeCalibration: yes,no
1541	// MJCalibration.DataCheck: yes,no
1542	// MJCalibration.Debug: yes,no
1543	// MJCalibration.Intensity: yes,no
1544	// MJCalibration.UseBlindPixel: yes,no
1545	// MJCalibration.UsePINDiode: yes,no
1546	// MJCalibration.Geometry: MGeomCamMagic, MGeomCamECO1000
1547	//
1548	// Name of a file containing reference values (see ReadReferenceFile)
1549	// Prefix.ReferenceFile: filename
1550	// (see ReadReferenceFile)
1551	//
1552	// For more details see the class description and the corresponding Getters
1553	//
1554	Bool_t MJCalibration::CheckEnvLocal()
1555	{
1556	TString dis = GetEnv("Display", "");
1557	if (dis.BeginsWith("Full", TString::kIgnoreCase))
1558	SetFullDisplay();
1559	if (dis.BeginsWith("DataCheck", TString::kIgnoreCase))
1560	SetDataCheckDisplay();
1561	if (dis.BeginsWith("Normal", TString::kIgnoreCase))
1562	SetNormalDisplay();
1563
1564	if (!MJCalib::CheckEnvLocal())
1565	return kFALSE;
1566
1567	SetRelTimeCalibration(GetEnv("RelTimeCalibration", IsRelTimes()));
1568	SetIntensity(GetEnv("IntensityCalibration", IsIntensity()));
1569	SetDebug(GetEnv("Debug", IsDebug()));
1570
1571	SetUseBlindPixel(GetEnv("UseBlindPixel", IsUseBlindPixel()));
1572	SetUsePINDiode(GetEnv("UsePINDiode", IsUsePINDiode()));
1573	SetGeometry(GetEnv("Geometry", fGeometry));
1574
1575	fReferenceFile = GetEnv("ReferenceFile",fReferenceFile.Data());
1576	ReadReferenceFile();
1577
1578	fHiLoCalibFile = GetEnv("HiLoCalibFile",fHiLoCalibFile.Data());
1579
1580	if (IsUseMC() && !fHiLoCalibFile.EndsWith("_mc.root"))
1581	{
1582	if (!fHiLoCalibFile.EndsWith(".root"))
1583	{
1584	*fLog << warn << "WARNING - Hi-/Lo-Gain intercalibration file ";
1585	*fLog << fHiLoCalibFile << " has not .root as extension..." << endl;
1586	}
1587	else
1588	fHiLoCalibFile.Insert(fHiLoCalibFile.Length()-5, "_mc");
1589	}
1590
1591	return ReadHiLoCalibFile();
1592	}
1593
1594	void MJCalibration::InitBlindPixel(MExtractBlindPixel &blindext,
1595	MHCalibrationChargeBlindCam &blindcam)
1596	{
1597	const Int_t run = fSequence.GetLastRun();
1598
1599	//
1600	// Initialize the blind pixel. Unfortunately, there is a hardware
1601	// difference in the first blind pixel until run
1602	// gkSecondBlindPixelInstallation and the later setup. The first
1603	// needs to use a filter because of the length of spurious NSB photon
1604	// signals. The latter get better along extracting the amplitude
1605	// from a small window.
1606	//
1607	const MCalibrationBlindCamOneOldStyle one;
1608	const MCalibrationBlindCamTwoNewStyle two;
1609	const MCalibrationBlindCamThreeNewStyle three;
1610
1611	const MCalibrationBlindCam &blindresults =
1612	run<gkSecondBlindPixelInstallation ? static_cast<MCalibrationBlindCam>(one) :
1613	(run<gkThirdBlindPixelInstallation ? static_cast<MCalibrationBlindCam>(two) : static_cast<MCalibrationBlindCam>(three));
1614
1615	if (IsIntensity())
1616	blindresults.Copy(*fIntensBlindCam.GetCam());
1617	else
1618	blindresults.Copy(fCalibrationBlindCam);
1619
1620	blindext.SetExtractionType(MExtractBlindPixel::kIntegral);
1621	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1622
1623	if (run<gkSecondBlindPixelInstallation)
1624	{
1625	blindext.SetRange(10,19,0,6);
1626	blindext.SetNSBFilterLimit(70);
1627	}
1628	else
1629	{
1630	blindext.SetRange(5,8,0,2);
1631	blindext.SetNSBFilterLimit(38);
1632	}
1633
1634	if (run>=gkThirdBlindPixelInstallation)
1635	blindext.SetDataType(MExtractBlindPixel::kRawEvt2);
1636	}
1637
1638	// --------------------------------------------------------------------------
1639	//
1640	// Execute the task list and the eventloop:
1641	//
1642	// - Check the colour of the files in fRuns (FindColor()), otherwise return
1643	// - Check for consistency between run numbers and number of files
1644	// - Add fRuns to MReadMarsFile
1645	// - Put into MParList:
1646	// 1) MPedestalCam (pedcam)
1647	// 2) MCalibrationQECam (fQECam)
1648	// 3) MCalibrationChargeCam (fCalibrationCam)
1649	// 4) MCalibrationRelTimeCam (fRelTimeCam) (only if flag IsRelTimes() is chosen)
1650	// 5) MBadPixelsCam (fBadPixels)
1651	// 6) MCalibrationChargePINDiode
1652	// 7) MCalibrationBlindPix
1653	// - Put into the MTaskList:
1654	// 1) MReadMarsFile
1655	// 2) MBadPixelsMerge
1656	// 3) MGeomApply
1657	// 4) MExtractor
1658	// 5) MExtractPINDiode
1659	// 6) MExtractBlindPixel
1660	// 7) MExtractTime (only if flag IsRelTimes() is chosen)
1661	// 8) MContinue(MFCosmics)
1662	// 9) MFillH("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode")
1663	// 10) MFillH("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam")
1664	// 11) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam")
1665	// 12) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillRelTime")
1666	// 13) MCalibrationChargeCalc
1667	// 14) MFillH("MHCalibrationRelTimeCam", "MArrivalTimeCam") (only if flag IsRelTimes() is chosen)
1668	// 15) MCalibrationRelTimeCalc
1669	// - Execute MEvtLoop
1670	// - DisplayResult()
1671	// - WriteResult()
1672	//
1673	Bool_t MJCalibration::Process(MPedestalCam &pedcam)
1674	{
1675	if (!fSequence.IsValid())
1676	{
1677	*fLog << err << "ERROR - Sequence invalid..." << endl;
1678	return kFALSE;
1679	}
1680
1681	*fLog << inf;
1682	fLog->Separator(GetDescriptor());
1683	*fLog << "Calculate calibration constants from Sequence #";
1684	*fLog << fSequence.GetSequence() << endl << endl;
1685
1686	// --------------------------------------------------------------------------------
1687
1688	if (!CheckEnv())
1689	return kFALSE;
1690
1691	// --------------------------------------------------------------------------------
1692
1693	// Setup Tasklist
1694	MParList plist;
1695	MTaskList tlist;
1696	plist.AddToList(&tlist);
1697	plist.AddToList(this); // take care of fDisplay!
1698
1699	MDirIter iter;
1700	if (fSequence.SetupCalRuns(iter, 0, IsUseRawData())<=0)
1701	return kFALSE;
1702
1703	//
1704	// Input containers
1705	//
1706	pedcam.SetName("MPedestalCam"); // MPedestalFundamental
1707	plist.AddToList(&pedcam);
1708	plist.AddToList(&fBadPixels);
1709
1710	//
1711	// Calibration Results containers
1712	//
1713	if (IsIntensity())
1714	{
1715
1716	MCalibrationChargeCam cam = (MCalibrationChargeCam)fIntensCalibCam.GetCam();
1717	cam->InitSize(fCalibrationCam.GetSize());
1718	cam->MergeHiLoConversionFactors(fCalibrationCam);
1719
1720	plist.AddToList(&fIntensQECam);
1721	plist.AddToList(&fIntensCalibCam);
1722	// plist.AddToList(&fIntensCalibrationPINDiode);
1723	plist.AddToList(&fIntensRelTimeCam);
1724	plist.AddToList(&fIntensBadCam);
1725	if (IsUseBlindPixel())
1726	plist.AddToList(&fIntensBlindCam);
1727	}
1728	else
1729	{
1730	plist.AddToList(&fQECam);
1731	plist.AddToList(&fCalibrationCam);
1732	plist.AddToList(&fRelTimeCam);
1733	if (IsUseBlindPixel())
1734	plist.AddToList(&fCalibrationBlindCam);
1735	if (IsUsePINDiode())
1736	plist.AddToList(&fCalibrationPINDiode);
1737	}
1738
1739	//
1740	// Initialize two histogram containers which could be modified in this class
1741	//
1742	MHCalibrationRelTimeCam reltimecam;
1743	MHCalibrationChargeCam chargecam;
1744	MHCalibrationChargeBlindCam blindcam;
1745	plist.AddToList(&chargecam);
1746
1747	if (IsUseBlindPixel())
1748	plist.AddToList(&blindcam);
1749	if (IsRelTimes())
1750	plist.AddToList(&reltimecam);
1751	//
1752	// Data Reading tasks
1753	//
1754	MReadMarsFile read("Events");
1755	MRawFileRead rawread(NULL);
1756
1757	if (IsUseRawData())
1758	{
1759	rawread.AddFiles(iter);
1760	tlist.AddToList(&rawread);
1761	}
1762	else
1763	{
1764	read.DisableAutoScheme();
1765	read.AddFiles(iter);
1766	tlist.AddToList(&read);
1767	}
1768
1769	//
1770	// Other Tasks
1771	//
1772
1773	// Set the default for data version earlier than 5, where no valid
1774	// trigger pattern exists. There should not be pin diode or other
1775	// types of events inside the calibration files which should be skipped,
1776	// anyway. So we set the default such that the MContinue ccalib
1777	// will never be executed.
1778	MTriggerPatternDecode trgpat;
1779	MFTriggerPattern fcalib("CalibFilter");
1780	fcalib.SetDefault(kFALSE);
1781	fcalib.DenyCalibration(MFTriggerPattern::kPrescaled);
1782
1783	MContinue ccalib(&fcalib,"ContTrigPattern");
1784
1785	MCalibrationPatternDecode decode;
1786	MGeomApply apply;
1787	apply.SetGeometry(fGeometry);
1788
1789	MBadPixelsMerge merge(&fBadPixels);
1790	MExtractPINDiode pinext;
1791	MExtractBlindPixel blindext;
1792
1793	if (IsUseBlindPixel())
1794	InitBlindPixel(blindext, blindcam);
1795
1796	// MExtractSlidingWindow extract2;
1797	// MExtractTimeHighestIntegral timehigh;
1798	MCalibrationChargeCalc calcalc;
1799	MCalibrationRelTimeCalc timecalc;
1800	calcalc.SetExtractor(fExtractor);
1801
1802	if (IsDebug())
1803	{
1804	chargecam.SetDebug();
1805	calcalc.SetDebug();
1806	}
1807
1808	//
1809	// Calibration histogramming
1810	//
1811	MFillH fillpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
1812	MFillH fillbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
1813	MFillH fillcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
1814	MFillH filltme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
1815	fillpin.SetBit(MFillH::kDoNotDisplay);
1816	fillbnd.SetBit(MFillH::kDoNotDisplay);
1817	fillcam.SetBit(MFillH::kDoNotDisplay);
1818	filltme.SetBit(MFillH::kDoNotDisplay);
1819
1820	//
1821	// Set default extractors in case, none has been set...
1822	//
1823	/*
1824	if (!fExtractor)
1825	fExtractor = &extract2;
1826	if (!fTimeExtractor)
1827	fTimeExtractor = &timehigh;
1828	*/
1829	MExtractTimeAndChargeSpline spline;
1830	if (!fExtractor)
1831	fExtractor = &spline;
1832	// if (!fTimeExtractor)
1833	// fTimeExtractor = &timehigh;
1834
1835	const Bool_t istimecharge = fExtractor->InheritsFrom("MExtractTimeAndCharge");
1836
1837	//
1838	// Look if the extractor is a pure charge or also a time extractor
1839	//
1840	if (istimecharge)
1841	{
1842	if (fExtractorCam.GetSize() == pedcam.GetSize())
1843	calcalc.SetPedestals(&fExtractorCam);
1844	else
1845	{
1846	*fLog << err << GetDescriptor() << "ERROR - ";
1847	*fLog << "Used Extractor derives from MExtractTimeAndCharge, " << endl;
1848	*fLog << "but MExtractorCam size " << fExtractorCam.GetSize() << " ";
1849	*fLog << "mismatch pedcam size " << pedcam.GetSize() << "! " << endl;
1850	return kFALSE;
1851	}
1852	}
1853
1854	//
1855	// Setup more tasks and tasklist
1856	//
1857	MTaskEnv taskenv("ExtractSignal");
1858	taskenv.SetDefault(fExtractor);
1859
1860	tlist.AddToList(&trgpat);
1861	if (fColor != MCalibrationCam::kCT1)
1862	tlist.AddToList(&ccalib);
1863	tlist.AddToList(&decode);
1864	tlist.AddToList(&merge);
1865	tlist.AddToList(&apply);
1866
1867	// Produce pedestal subtracted raw-data
1868	MPedestalSubtract pedsub;
1869	pedsub.SetPedestalCam(fExtractor->GetPedestals());
1870	tlist.AddToList(&pedsub);
1871
1872	// Setup to use the hi-gain extraction window in the lo-gain
1873	// range (the start of the lo-gain range is added automatically
1874	// by MPedCalcFromLoGain)
1875	//
1876	// The window size of the extractor is not yet initialized,
1877	// so we have to stick to the extraction range
1878	const Int_t f = fExtractor->GetHiGainFirst();
1879	const Int_t l = fExtractor->GetHiGainLast();
1880	const Int_t w = (l-f+1)&~1;
1881
1882	MPedCalcPedRun pedcalc;
1883	pedcalc.SetExtractWindow(f, w);
1884
1885	if (IsIntensity())
1886	tlist.AddToList(&pedcalc);
1887
1888	MCalibColorSet colorset;
1889	if (fColor != MCalibrationCam::kNONE)
1890	colorset.SetExplicitColor(fColor);
1891	tlist.AddToList(&colorset);
1892
1893	tlist.AddToList(&taskenv);
1894
1895	if (IsUsePINDiode())
1896	tlist.AddToList(&pinext);
1897	if (IsUseBlindPixel())
1898	tlist.AddToList(&blindext);
1899
1900	MTaskEnv taskenv2("ExtractTime");
1901	if (!istimecharge)
1902	{
1903	taskenv2.SetDefault(fTimeExtractor);
1904
1905	if (IsRelTimes())
1906	tlist.AddToList(&taskenv2);
1907	}
1908
1909	//
1910	// Apply a filter against cosmics
1911	// (will have to be needed in the future
1912	// when the calibration hardware-trigger is working)
1913	//
1914	MFCosmics cosmics;
1915	cosmics.SetMaxEmptyPixels(0.05);
1916	cosmics.SetMaxAcceptedFraction(0.5); // max=0.5 cosmics
1917
1918	MContinue cont(&cosmics, "ContCosmics");
1919	tlist.AddToList(&cont);
1920
1921	MCalibColorSteer steer;
1922	if (IsIntensity())
1923	tlist.AddToList(&steer);
1924
1925	if (IsRelTimes())
1926	{
1927	tlist.AddToList(&filltme);
1928	tlist.AddToList(&timecalc);
1929	}
1930
1931	tlist.AddToList(&fillcam);
1932
1933	if (IsUseBlindPixel())
1934	tlist.AddToList(&fillbnd);
1935	if (IsUsePINDiode())
1936	tlist.AddToList(&fillpin);
1937
1938	tlist.AddToList(&calcalc);
1939
1940
1941	MHCamEvent evt2(0, "Extra'd", "Extracted Calibration Signal;;S [cnts/sl]");
1942	MHCamEvent evt9(4, "ArrTm", "Extracted ArrivalTime;;T");
1943
1944	MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtractedSignal");
1945	MFillH fill9(&evt9, "MArrivalTimeCam", "FillArrivalTime");
1946
1947	tlist.AddToList(&fill2);
1948	tlist.AddToList(&fill9);
1949
1950
1951	// Create and setup the eventloop
1952	MEvtLoop evtloop(fName);
1953	evtloop.SetParList(&plist);
1954	evtloop.SetDisplay(fDisplay);
1955	evtloop.SetLogStream(fLog);
1956	if (!SetupEnv(evtloop))
1957	return kFALSE;
1958
1959	if (!taskenv.GetTask() && !taskenv2.GetTask())
1960	{
1961	*fLog << err << "ERROR - Neither ExtractSignal nor ExtractTime initialized or both '<dummy>'." << endl;
1962	return kFALSE;
1963	}
1964
1965	if (!WriteTasks(taskenv.GetTask(), istimecharge ? 0 : taskenv2.GetTask()))
1966	return kFALSE;
1967
1968	// Execute first analysis
1969	const Bool_t rc = evtloop.Eventloop();
1970
1971	if (!fCalibrationPINDiode.IsValid())
1972	SetUsePINDiode(kFALSE);
1973
1974	const Int_t numexec = IsUseRawData() ? rawread.GetNumExecutions() : read.GetNumExecutions();
1975	if (numexec>0)
1976	{
1977	DisplayResult(plist);
1978	if (!WriteResult(plist))
1979	return kFALSE;
1980	}
1981
1982	if (!rc)
1983	{
1984	*fLog << err << GetDescriptor() << ": Failed." << endl;
1985	return kFALSE;
1986	}
1987
1988	// --------------------------------------------------------------------------------
1989
1990	if (fIsPixelCheck)
1991	{
1992	chargecam[fCheckedPixId].DrawClone("datacheck");
1993	chargecam(fCheckedPixId).DrawClone("datacheck");
1994
1995	if (IsRelTimes())
1996	{
1997	reltimecam[fCheckedPixId].DrawClone("");
1998	reltimecam(fCheckedPixId).DrawClone("");
1999	}
2000	}
2001
2002	*fLog << all << GetDescriptor() << ": Done." << endl;
2003
2004	return kTRUE;
2005	}
2006
2007	/*
2008	Bool_t MJCalibration::WriteEventloop(MEvtLoop &evtloop) const
2009	{
2010	if (IsNoStorage())
2011	return kTRUE;
2012
2013	if (fPathOut.IsNull())
2014	return kTRUE;
2015
2016	const TString oname(GetOutputFile());
2017
2018	*fLog << inf << "Writing to file: " << oname << endl;
2019
2020	TFile file(oname, fOverwrite?"RECREATE":"NEW", "File created by MJCalibration", 9);
2021	if (!file.IsOpen())
2022	{
2023	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
2024	return kFALSE;
2025	}
2026
2027	if (evtloop.Write(fName)<=0)
2028	{
2029	*fLog << err << "Unable to write MEvtloop to " << oname << endl;
2030	return kFALSE;
2031	}
2032
2033	return kTRUE;
2034	}
2035	*/
2036
2037	Bool_t MJCalibration::WriteTasks(MTask t1, MTask t2) const
2038	{
2039	if (IsNoStorage())
2040	return kTRUE;
2041
2042	TObjArray cont;
2043	if (t1)
2044	cont.Add(t1);
2045	if (t2)
2046	cont.Add(t2);
2047
2048	return WriteContainer(cont, GetOutputFileName(), fOverwrite?"RECREATE":"NEW");
2049	}
2050
2051	// --------------------------------------------------------------------------
2052	//
2053	// Write the result into the output file GetOutputFile(), if fOutputPath exists.
2054	//
2055	// The following containers are written:
2056	// - MStatusDisplay
2057	// - MCalibrationChargeCam or MCalibrationIntensityChargeCam
2058	// - MCalibrationBlindCam or MCalibrationIntensityBlindCam
2059	// - MCalibrationQECam or MCalibrationIntensityQECam
2060	// - MCalibrationChargePINDiode
2061	// - MBadPixelsCam
2062	// If the flag kRelTimes is set, then also:
2063	// - MCalibrationRelTimeCam or MCalibrationIntensityRelTimeCam
2064	//
2065	Bool_t MJCalibration::WriteResult(MParList &plist)
2066	{
2067	if (IsNoStorage())
2068	return kTRUE;
2069
2070	TObjArray cont;
2071
2072	if (IsIntensity())
2073	{
2074	cont.Add(&fIntensBadCam);
2075	cont.Add(&fIntensCalibCam);
2076	cont.Add(&fIntensQECam);
2077	cont.Add(&fIntensBlindCam);
2078	}
2079	else
2080	{
2081	cont.Add(&fBadPixels);
2082	cont.Add(&fCalibrationCam);
2083	cont.Add(&fQECam);
2084	cont.Add(&fCalibrationBlindCam);
2085	}
2086	cont.Add(&fCalibrationPINDiode);
2087
2088	//if (IsRelTimes())
2089	cont.Add(IsIntensity() ? (TObject)&fIntensRelTimeCam : (TObject)&fRelTimeCam);
2090
2091	if (fExtractorCam.GetSize() != 0)
2092	cont.Add(&fExtractorCam);
2093
2094	TObject *pedcam = plist.FindObject("MPedestalCam");
2095	if (!pedcam)
2096	*fLog << warn << " - WARNING - MPedestalCam (fundamental)... not found for writing!" << endl;
2097	else
2098	cont.Add(pedcam);
2099
2100	TObject *geom = plist.FindObject("MGeomCam");
2101	if (!geom)
2102	*fLog << warn << " - WARNING - MGeomCam... not found for writing!" << endl;
2103	else
2104	cont.Add(geom);
2105
2106	if (IsHistsStorage())
2107	{
2108	cont.Add(plist.FindObject("MHCalibrationChargeCam"));
2109	cont.Add(plist.FindObject("MHCalibrationChargeBlindCam"));
2110	cont.Add(plist.FindObject("MHCalibrationChargePINDiode"));
2111	if (IsRelTimes())
2112	cont.Add(plist.FindObject("MHCalibrationRelTimeCam"));
2113	}
2114
2115	return WriteContainer(cont, GetOutputFileName(), "UPDATE");
2116	}
2117
2118	void MJCalibration::DisplayDoubleProject(MHCamera cam, const char whatsmall, const char* whatbig) const
2119	{
2120
2121	TArrayI inner(1);
2122	inner[0] = 0;
2123
2124	TArrayI outer(1);
2125	outer[0] = 1;
2126
2127	TArrayI s1(3);
2128	s1[0] = 6;
2129	s1[1] = 1;
2130	s1[2] = 2;
2131
2132	TArrayI s2(3);
2133	s2[0] = 3;
2134	s2[1] = 4;
2135	s2[2] = 5;
2136
2137	TVirtualPad *pad = gPad;
2138	pad->Divide(2,1);
2139
2140	TH1D *inout[2];
2141
2142	for (int i=0; i<2; i++)
2143	{
2144	pad->cd(i+1);
2145	gPad->SetBorderMode(0);
2146	gPad->SetTicks();
2147
2148	inout[i] = cam->ProjectionS(TArrayI(), TArrayI(1,&i), i==0 ? "Inner" : "Outer");
2149	FixDataCheckHist(inout[i]);
2150	inout[i]->SetTitle(Form("%s %s",cam->GetTitle(),i==0 ? "Inner" : "Outer"));
2151	inout[i]->SetDirectory(NULL);
2152	inout[i]->SetLineColor(kRed+i);
2153	inout[i]->SetBit(kCanDelete);
2154	inout[i]->Draw();
2155	//
2156	// Display the outliers as dead and noisy pixels
2157	//
2158	if (!inout[i]->Fit("gaus","0Q"))
2159	DisplayOutliers(inout[i],whatsmall,whatbig);
2160
2161	gPad->Modified();
2162	gPad->Update();
2163	TPaveStats st = (TPaveStats)inout[i]->GetListOfFunctions()->FindObject("stats");
2164	st->SetY1NDC(0.6);
2165	st->SetY2NDC(0.9);
2166	st->SetX1NDC(0.55);
2167	st->SetX2NDC(0.99);
2168	gPad->Modified();
2169	gPad->Update();
2170
2171	TLegend *leg2 = new TLegend(0.55,0.4,0.99,0.6);
2172
2173	//
2174	// Display the two half of the camera separately
2175	//
2176	TH1D *half[2];
2177	half[0] = cam->ProjectionS(s1, TArrayI(1,&i), "Sector 6-1-2");
2178	half[1] = cam->ProjectionS(s2, TArrayI(1,&i), "Sector 3-4-5");
2179
2180	for (int j=0; j<2; j++)
2181	{
2182	half[j]->SetLineColor(kRed+i+2*j+1);
2183	half[j]->SetDirectory(NULL);
2184	half[j]->SetBit(kCanDelete);
2185	half[j]->Draw("same");
2186	leg2->AddEntry(half[j], half[j]->GetName(), "l");
2187	}
2188	leg2->Draw();
2189	}
2190	}

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