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Last change on this file since 8446 was 8434, checked in by tbretz, 18 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	! Author(s): Markus Gaug, 02/2004 <mailto:markus@ifae.es>
20	!
21	! Copyright: MAGIC Software Development, 2000-2005
22	!
23	!
24	\* ======================================================================== */
25
26	/////////////////////////////////////////////////////////////////////////////
27	//
28	// MJCalibration
29	//
30	// Do one calibration loop over serious of runs with the same pulser
31	// colour and the same intensity. The following containers (rectangular) and
32	// tasks (ellipses) are called to produce an MCalibrationChargeCam and to
33	// update the MCalibrationQECam: (MCalibrate is not called from this class)
34	//
35	//Begin_Html
36	/*
37	<img src="images/CalibClasses.gif">
38	*/
39	//End_Html
40	//
41	// Different signal extractors can be set with the command SetExtractor()
42	// Only extractors deriving from MExtractor can be set, default is MExtractSlidingWindow
43	//
44	// Different arrival time extractors can be set with the command SetTimeExtractor()
45	// Only extractors deriving from MExtractTime can be set, default is MExtractTimeHighestIntegral
46	//
47	// At the end of the eventloop, plots and results are displayed, depending on
48	// the flags set (see DisplayResult())
49	//
50	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
51	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
52	// Otherwise, (default: SetNormalDisplay()), a good selection of plots is given
53	//
54	// The absolute light calibration devices Blind Pixel and PIN Diode can be switched on
55	// and off with the commands:
56	//
57	// - SetUseBlindPixel(Bool_t )
58	// - SetUsePINDiode(Bool_t )
59	//
60	// See also: MHCalibrationChargePix, MHCalibrationChargeCam, MHGausEvents
61	// MHCalibrationChargeBlindPix, MHCalibrationChargePINDiode
62	// MCalibrationChargePix, MCalibrationChargeCam, MCalibrationChargeCalc
63	// MCalibrationBlindPix, MCalibrationChargePINDiode,
64	// MCalibrationQECam, MBadPixelsPix, MBadPixelsCam
65	//
66	// If the flag RelTimeCalibration() is set, a calibration of the relative arrival
67	// times is also performed. The following containers (rectangular) and
68	// tasks (ellipses) are called to produce an MCalibrationRelTimeCam used by
69	// MCalibrateTime to correct timing offset between pixels: (MCalibrateTime is not
70	// called from this class)
71	//
72	//Begin_Html
73	/*
74	<img src="images/RelTimeClasses.gif">
75	*/
76	//End_Html
77	//
78	// Different arrival time extractors can be set directly with the command
79	// SetTimeExtractor(MExtractor *)
80	//
81	// Resource file entries are case sensitive!
82	//
83	// See also: MHCalibrationRelTimePix, MHCalibrationRelTimeCam, MHGausEvents
84	// MCalibrationRelTimePix, MCalibrationRelTimeCam
85	// MBadPixelsPix, MBadPixelsCam
86	//
87	/////////////////////////////////////////////////////////////////////////////
88	#include "MJCalibration.h"
89
90	#include <TFile.h>
91	#include <TF1.h>
92	#include <TStyle.h>
93	#include <TCanvas.h>
94	#include <TSystem.h>
95	#include <TLine.h>
96	#include <TLatex.h>
97	#include <TLegend.h>
98	#include <TRegexp.h>
99	#include <TPaveText.h>
100	#include <TPaveStats.h>
101	#include <TEnv.h>
102
103	#include "MLog.h"
104	#include "MLogManip.h"
105
106	#include "MEnv.h"
107	#include "MRunIter.h"
108	#include "MSequence.h"
109	#include "MParList.h"
110	#include "MTaskList.h"
111	#include "MEvtLoop.h"
112
113	#include "MHCamera.h"
114	#include "MGeomCam.h"
115
116	#include "MCalibrationPatternDecode.h"
117	#include "MCalibrationCam.h"
118	#include "MCalibrationQECam.h"
119	#include "MCalibrationQEPix.h"
120	#include "MCalibrationChargeCam.h"
121	#include "MCalibrationChargePix.h"
122	#include "MCalibrationChargePINDiode.h"
123	#include "MCalibrationBlindPix.h"
124	#include "MCalibrationBlindCam.h"
125	#include "MCalibrationBlindCamOneOldStyle.h"
126	#include "MCalibrationBlindCamTwoNewStyle.h"
127	#include "MCalibrationBlindCamThreeNewStyle.h"
128	#include "MCalibrationChargeCalc.h"
129	#include "MCalibColorSet.h"
130	#include "MCalibrationRelTimeCam.h"
131	#include "MCalibrationRelTimeCalc.h"
132
133	#include "MHGausEvents.h"
134	#include "MHCalibrationCam.h"
135	#include "MHCalibrationChargeCam.h"
136	#include "MHCalibrationChargeBlindCam.h"
137	#include "MHCalibrationChargePINDiode.h"
138	#include "MHCalibrationRelTimeCam.h"
139	#include "MHCalibrationPix.h"
140
141	#include "MHCamEvent.h"
142
143	#include "MReadMarsFile.h"
144	#include "MPedCalcPedRun.h"
145	#include "MRawFileRead.h"
146	#include "MGeomApply.h"
147	#include "MPedestalSubtract.h"
148	#include "MTaskEnv.h"
149	#include "MBadPixelsMerge.h"
150	#include "MBadPixelsCam.h"
151	#include "MExtractTime.h"
152	#include "MExtractor.h"
153	#include "MExtractPINDiode.h"
154	#include "MExtractBlindPixel.h"
155	#include "MExtractTimeAndChargeSpline.h"
156	#include "MFCosmics.h"
157	#include "MFTriggerPattern.h"
158	#include "MContinue.h"
159	#include "MFillH.h"
160
161	#include "MTriggerPatternDecode.h"
162
163	#include "MArrivalTimeCam.h"
164
165	#include "MStatusDisplay.h"
166
167	ClassImp(MJCalibration);
168
169	using namespace std;
170
171	const Int_t MJCalibration::gkIFAEBoxInaugurationRun = 20113;
172	const Int_t MJCalibration::gkSecondBlindPixelInstallation = 31693;
173	const Int_t MJCalibration::gkSpecialPixelsContInstallation = 34057;
174	const Int_t MJCalibration::gkThirdBlindPixelInstallation = 43308;
175	const TString MJCalibration::fgReferenceFile = "mjobs/calibrationref.rc";
176	const TString MJCalibration::fgHiLoCalibFile = "resources/hilocalib.rc";
177
178	// --------------------------------------------------------------------------
179	//
180	// Default constructor.
181	//
182	// - fExtractor to NULL, fTimeExtractor to NULL, fColor to kNONE,
183	// fDisplay to kNormalDisplay, kRelTimes to kFALSE, kataCheck to kFALSE, kDebug to kFALSE
184	// - SetUseBlindPixel()
185	// - SetUsePINDiode()
186	//
187	MJCalibration::MJCalibration(const char name, const char title)
188	: fExtractor(NULL), fTimeExtractor(NULL),
189	fColor(MCalibrationCam::kNONE), fDisplayType(kDataCheckDisplay),
190	fGeometry("MGeomCamMagic")
191	{
192
193	fName = name ? name : "MJCalibration";
194	fTitle = title ? title : "Tool to create the calibration constants for one calibration run";
195
196	//SetHiLoCalibration();
197	SetRelTimeCalibration();
198	SetDebug(kFALSE);
199
200	SetReferenceFile();
201	SetHiLoCalibFile();
202
203	fConvFADC2PheMin = 0.;
204	fConvFADC2PheMax = 1.5;
205	fConvFADC2PhotMin = 0.;
206	fConvFADC2PhotMax = 10.;
207	fQEMin = 0.;
208	fQEMax = 0.3;
209	fArrivalTimeMin = 1.;
210	fArrivalTimeMax = 10.;
211	fTimeOffsetMin = -3.;
212	fTimeOffsetMax = 3.;
213	fTimeResolutionMin = 0.;
214	fTimeResolutionMax = 1.;
215
216	fRefFADC2PheInner = 0.14;
217	fRefFADC2PheOuter = 0.4;
218	fRefConvFADC2PheInner = 0.14;
219	fRefConvFADC2PheOuter = 0.52;
220	fRefQEInner = 0.18;
221	fRefQEOuter = 0.12;
222	fRefArrivalTimeInner = 4.5;
223	fRefArrivalTimeOuter = 5.0;
224	fRefArrivalTimeRmsInner = 0.5;
225	fRefArrivalTimeRmsOuter = 0.5;
226	fRefTimeOffsetInner = -0.23;
227	fRefTimeOffsetOuter = 0.39;
228	fRefTimeResolutionInner = 0.153;
229	fRefTimeResolutionOuter = 0.128;
230
231	}
232
233	void MJCalibration::DrawTab(MParList &plist, const char cont, const char name, Option_t *opt)
234	{
235	TObject *obj = plist.FindObject(cont);
236	if (!obj)
237	return;
238
239	fDisplay->AddTab(name);
240	obj->DrawClone(opt);
241	}
242
243	// --------------------------------------------------------------------------
244	//
245	// Display the results in MStatusDisplay:
246	//
247	// - Add "Calibration" to the MStatusDisplay title
248	// - Retrieve the MGeomCam from MParList
249	// - Initialize the following MHCamera's:
250	// 1) MCalibrationPix::GetMean()
251	// 2) MCalibrationPix::Sigma()
252	// 3) MCalibrationChargePix::GetRSigma()
253	// 4) MCalibrationChargePix::GetRSigmaPerCharge()
254	// 5) MCalibrationChargePix::GetPheFFactorMethod()
255	// 6) MCalibrationChargePix::GetMeanConvFADC2Phe()
256	// 7) MCalibrationChargePix::GetMeanFFactorFADC2Phot()
257	// 8) MCalibrationQEPix::GetQECascadesFFactor()
258	// 9) MCalibrationQEPix::GetQECascadesBlindPixel()
259	// 10) MCalibrationQEPix::GetQECascadesPINDiode()
260	// 11) MCalibrationQEPix::GetQECascadesCombined()
261	// 12) MCalibrationQEPix::IsAverageQEFFactorAvailable()
262	// 13) MCalibrationQEPix::IsAverageQEBlindPixelAvailable()
263	// 14) MCalibrationQEPix::IsAverageQEPINDiodeAvailable()
264	// 15) MCalibrationQEPix::IsAverageQECombinedAvailable()
265	// 16) MCalibrationChargePix::IsHiGainSaturation()
266	// 17) MCalibrationPix::GetHiLoMeansDivided()
267	// 18) MCalibrationPix::GetHiLoSigmasDivided()
268	// 19) MCalibrationChargePix::GetHiGainPickup()
269	// 20) MCalibrationChargePix::GetLoGainPickup()
270	// 21) MCalibrationChargePix::GetHiGainBlackout()
271	// 22) MCalibrationChargePix::GetLoGainBlackout()
272	// 23) MCalibrationPix::IsExcluded()
273	// 24) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnsuitableRun)
274	// 25) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnreliableRun)
275	// 26) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kHiGainOscillating)
276	// 27) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kLoGainOscillating)
277	// 28) MCalibrationChargePix::GetAbsTimeMean()
278	// 29) MCalibrationChargePix::GetAbsTimeRms()
279	//
280	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
281	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
282	// and otherwise, (default: SetNormalDisplay()), a good selection of plots is given
283	//
284	void MJCalibration::DisplayResult(MParList &plist)
285	{
286	if (!fDisplay)
287	return;
288
289	TString drawoption = "nonew ";
290	if (fDisplayType == kDataCheckDisplay)
291	drawoption += "datacheck";
292	if (fDisplayType == kFullDisplay)
293	drawoption += "all";
294
295	if (IsUsePINDiode())
296	DrawTab(plist, "MHCalibrationChargePINDiode", "PINDiode", drawoption);
297	if (IsUseBlindPixel())
298	DrawTab(plist, "MHCalibrationChargeBlindCam", "BlindPix", drawoption);
299	if (IsRelTimes())
300	DrawTab(plist, "MHCalibrationRelTimeCam", "Time", drawoption);
301	DrawTab(plist, "MHCalibrationChargeCam", "Charge", drawoption);
302
303	//
304	// Update display
305	//
306	TString title = fDisplay->GetTitle();
307	title += "-- Calibration ";
308	title += Form("calib%08d", fSequence.GetSequence());
309	title += " --";
310	fDisplay->SetTitle(title);
311
312	//
313	// Get container from list
314	//
315	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
316
317	// Create histograms to display
318	MHCamera disp1 (geomcam, "Charge", "Fitted Mean Signal (Charges)");
319	MHCamera disp2 (geomcam, "SigmaCharge", "Sigma of Fitted Signal");
320	MHCamera disp3 (geomcam, "RSigma", "Reduced Sigmas");
321	MHCamera disp4 (geomcam, "RSigmaPerCharge", "Reduced Sigma per Charge");
322	MHCamera disp5 (geomcam, "NumPhes", "Number Photo-electrons");
323	MHCamera disp6 (geomcam, "ConvFADC2Phes", "Phes per Charge (Before Flat-Field)");
324	MHCamera disp7 (geomcam, "TotalFFactor", "Total F-Factor(F-Factor Method)");
325	MHCamera disp8 (geomcam, "CascadesQEFFactor", "Cascades QE (F-Factor Method)");
326	MHCamera disp9 (geomcam, "CascadesQEBlindPix","Cascades QE (Blind Pixel Method)");
327	MHCamera disp10(geomcam, "CascadesQEPINDiode","Cascades QE (PIN Diode Method)");
328	MHCamera disp11(geomcam, "CascadesQECombined","Cascades QE (Combined Method)");
329	MHCamera disp12(geomcam, "FFactorValid", "Pixels with Valid F-Factor Calibration");
330	MHCamera disp13(geomcam, "BlindPixelValid", "Pixels with valid BlindPixel Calibration");
331	MHCamera disp14(geomcam, "PINdiodeValid", "Pixels with Valid PINDiode Calibration");
332	MHCamera disp15(geomcam, "CombinedValid", "Pixels with Valid Combined Calibration");
333	MHCamera disp16(geomcam, "Saturation", "Pixels with Saturated Hi Gain");
334	MHCamera disp17(geomcam, "ConversionMeans", "Conversion HiGain.vs.LoGain Means");
335	MHCamera disp18(geomcam, "ConversionSigmas", "Conversion HiGain.vs.LoGain Sigmas");
336	MHCamera disp19(geomcam, "HiGainPickup", "Number Pickup Events Hi Gain");
337	MHCamera disp20(geomcam, "LoGainPickup", "Number Pickup Events Lo Gain");
338	MHCamera disp21(geomcam, "HiGainBlackout", "Number Blackout Events Hi Gain");
339	MHCamera disp22(geomcam, "LoGainBlackout", "Number Blackout Events Lo Gain");
340	MHCamera disp23(geomcam, "Excluded", "Pixels Previously Excluded");
341	MHCamera disp24(geomcam, "UnSuitable", "Pixels NOT Suited for Further Analysis");
342	MHCamera disp25(geomcam, "UnReliable", "Pixels Suitable, but NOT Reliable for Further Analysis");
343	MHCamera disp26(geomcam, "HiGainOscillating", "Oscillating Pixels High Gain");
344	MHCamera disp27(geomcam, "LoGainOscillating", "Oscillating Pixels Low Gain");
345	MHCamera disp28(geomcam, "AbsTimeMean", "Abs. Arrival Times");
346	MHCamera disp29(geomcam, "AbsTimeRms", "RMS of Arrival Times");
347	MHCamera disp30(geomcam, "MeanTime", "Mean Rel. Arrival Times");
348	MHCamera disp31(geomcam, "SigmaTime", "Sigma Rel. Arrival Times");
349	MHCamera disp32(geomcam, "TimeProb", "Probability of Time Fit");
350	MHCamera disp33(geomcam, "TimeNotFitValid", "Pixels with not valid Fit Results");
351	MHCamera disp34(geomcam, "TimeOscillating", "Oscillating Pixels");
352	MHCamera disp35(geomcam, "TotalConv", "Conversion Factor to Photons");
353	MHCamera disp36(geomcam, "RMSperMean", "Charge histogram RMS per Mean");
354	MHCamera disp37(geomcam, "TotalConvPhe", "Conversion Factor to equiv. Phe's");
355
356	// Fitted charge means and sigmas
357	disp1.SetCamContent(fCalibrationCam, 0);
358	disp1.SetCamError( fCalibrationCam, 1);
359	disp2.SetCamContent(fCalibrationCam, 2);
360	disp2.SetCamError( fCalibrationCam, 3);
361
362	// Reduced Sigmas and reduced sigmas per charge
363	disp3.SetCamContent(fCalibrationCam, 5);
364	disp3.SetCamError( fCalibrationCam, 6);
365	disp4.SetCamContent(fCalibrationCam, 7);
366	disp4.SetCamError( fCalibrationCam, 8);
367
368	// F-Factor Method
369	disp5.SetCamContent(fCalibrationCam, 9);
370	disp5.SetCamError( fCalibrationCam, 10);
371	disp6.SetCamContent(fCalibrationCam, 11);
372	disp6.SetCamError( fCalibrationCam, 12);
373	disp7.SetCamContent(fCalibrationCam, 13);
374	disp7.SetCamError( fCalibrationCam, 14);
375
376	// Quantum Efficiencies
377	disp8.SetCamContent (fQECam, 0 );
378	disp8.SetCamError (fQECam, 1 );
379	disp9.SetCamContent (fQECam, 2 );
380	disp9.SetCamError (fQECam, 3 );
381	disp10.SetCamContent(fQECam, 4 );
382	disp10.SetCamError (fQECam, 5 );
383	disp11.SetCamContent(fQECam, 6 );
384	disp11.SetCamError (fQECam, 7 );
385
386	// Valid flags
387	disp12.SetCamContent(fQECam, 8 );
388	disp13.SetCamContent(fQECam, 9 );
389	disp14.SetCamContent(fQECam, 10);
390	disp15.SetCamContent(fQECam, 11);
391
392	// Conversion Hi-Lo
393	disp16.SetCamContent(fCalibrationCam, 25);
394	disp17.SetCamContent(fCalibrationCam, 16);
395	disp17.SetCamError (fCalibrationCam, 17);
396	disp18.SetCamContent(fCalibrationCam, 18);
397	disp18.SetCamError (fCalibrationCam, 19);
398
399	// Pickup and Blackout
400	disp19.SetCamContent(fCalibrationCam, 21);
401	disp20.SetCamContent(fCalibrationCam, 22);
402	disp21.SetCamContent(fCalibrationCam, 23);
403	disp22.SetCamContent(fCalibrationCam, 24);
404
405	// Pixels with defects
406	disp23.SetCamContent(fCalibrationCam, 20);
407	disp24.SetCamContent(fBadPixels, 6);
408	disp25.SetCamContent(fBadPixels, 7);
409
410	// Oscillations
411	disp26.SetCamContent(fBadPixels, 10);
412	disp27.SetCamContent(fBadPixels, 11);
413
414	// Arrival Times
415	disp28.SetCamContent(fCalibrationCam, 26);
416	disp28.SetCamError( fCalibrationCam, 27);
417	disp29.SetCamContent(fCalibrationCam, 27);
418
419	// RMS and Mean
420	disp36.SetCamContent(fCalibrationCam,32);
421	disp36.SetCamError(fCalibrationCam,33);
422
423	disp1.SetYTitle("Q [FADC cnts]");
424	disp2.SetYTitle("\\sigma_{Q} [FADC cnts]");
425
426	disp3.SetYTitle("\\sqrt{\\sigma^{2}_{Q} - RMS^{2}_{Ped}} [FADC cnts]");
427	disp4.SetYTitle("Red.Sigma/<Q> [1]");
428
429	disp5.SetYTitle("Photo-electons [1]");
430	disp6.SetYTitle("Phes/<Q> [FADC cnts^{-1}]");
431	disp7.SetYTitle("Total F-Factor [1]");
432
433	disp8.SetYTitle("QE [1]");
434	disp9.SetYTitle("QE [1]");
435	disp10.SetYTitle("QE [1]");
436	disp11.SetYTitle("QE [1]");
437
438	disp12.SetYTitle("[1]");
439	disp13.SetYTitle("[1]");
440	disp14.SetYTitle("[1]");
441	disp15.SetYTitle("[1]");
442	disp16.SetYTitle("[1]");
443
444	disp17.SetYTitle("<Q>(High)/<Q>(Low) [1]");
445	disp18.SetYTitle("\\sigma_{Q}(High)/\\sigma_{Q}(Low) [1]");
446
447	disp19.SetYTitle("[1]");
448	disp20.SetYTitle("[1]");
449	disp21.SetYTitle("[1]");
450	disp22.SetYTitle("[1]");
451	// disp23.SetYTitle("[1]");
452	// disp24.SetYTitle("[1]");
453	// disp25.SetYTitle("[1]");
454	disp26.SetYTitle("[1]");
455	disp27.SetYTitle("[1]");
456
457	disp28.SetYTitle("Mean Abs. Time [FADC sl.]");
458	disp29.SetYTitle("RMS Abs. Time [FADC sl.]");
459	disp35.SetYTitle("Conv.Factor [Ph/FADC cnts]");
460	disp36.SetYTitle("Charge RMS/<Q> [1]");
461	disp37.SetYTitle("Conv.Factor [Phe/FADC cnts]");
462
463	for (UInt_t i=0;i<geomcam.GetNumPixels();i++)
464	{
465
466	MCalibrationChargePix &pix = (MCalibrationChargePix&)fCalibrationCam[i];
467	MCalibrationQEPix &qe = (MCalibrationQEPix&)fQECam[i];
468
469	if (!pix.IsFFactorMethodValid())
470	continue;
471
472	const Float_t convphe = pix.GetMeanConvFADC2Phe();
473	const Float_t quaeff = qe.GetQECascadesFFactor();
474
475	disp35.Fill(i,convphe/quaeff);
476	disp35.SetUsed(i);
477
478	disp37.Fill(i,convphe/quaeff*MCalibrationQEPix::gkDefaultAverageQE);
479	disp37.SetUsed(i);
480	}
481
482
483	if (IsRelTimes())
484	{
485	disp30.SetCamContent(fRelTimeCam, 0);
486	disp30.SetCamError( fRelTimeCam, 1);
487	disp31.SetCamContent(fRelTimeCam, 2);
488	disp31.SetCamError( fRelTimeCam, 3);
489	disp32.SetCamContent(fRelTimeCam, 4);
490	disp33.SetCamContent(fBadPixels, 20);
491	disp34.SetCamContent(fBadPixels, 21);
492
493	disp30.SetYTitle("Time Offset [FADC units]");
494	disp31.SetYTitle("Timing resolution [FADC units]");
495	disp32.SetYTitle("P_{Time} [1]");
496	disp33.SetYTitle("[1]");
497	disp34.SetYTitle("[1]");
498	}
499
500	if (fDisplayType == kDataCheckDisplay)
501	{
502
503	TCanvas &c1 = fDisplay->AddTab("FitCharge");
504	c1.Divide(3, 3);
505
506	//
507	// MEAN CHARGES
508	//
509
510	c1.cd(1);
511	gPad->SetBorderMode(0);
512	gPad->SetTicks();
513	MHCamera obj1=(MHCamera)disp1.DrawCopy("hist");
514	//
515	// for the datacheck, fix the ranges!!
516	//
517	// obj1->SetMinimum(fChargeMin);
518	// obj1->SetMaximum(fChargeMax);
519	//
520	// Set the datacheck sizes:
521	//
522	FixDataCheckHist((TH1D*)obj1);
523	obj1->SetStats(kFALSE);
524	//
525	// set reference lines
526	//
527	// DisplayReferenceLines(obj1,0);
528
529	c1.cd(4);
530	gPad->SetBorderMode(0);
531	obj1->SetPrettyPalette();
532	obj1->Draw();
533
534	c1.cd(7);
535	gPad->SetBorderMode(0);
536	gPad->SetTicks();
537	TH1D obj2 = (TH1D)obj1->Projection(obj1->GetName());
538	obj2->Draw();
539	obj2->SetBit(kCanDelete);
540	obj2->Fit("gaus","Q");
541	TF1 *fun2 = obj2->GetFunction("gaus");
542	fun2->SetLineColor(kYellow);
543	gPad->Modified();
544	gPad->Update();
545	TPaveStats st = (TPaveStats)obj2->GetListOfFunctions()->FindObject("stats");
546	st->SetY1NDC(0.55);
547	st->SetY2NDC(0.89);
548	st->SetX1NDC(0.65);
549	st->SetX2NDC(0.99);
550	gPad->Modified();
551	gPad->Update();
552	//
553	// Set the datacheck sizes:
554	//
555	FixDataCheckHist(obj2);
556	obj2->SetStats(1);
557
558	//
559	// Display the outliers as dead and noisy pixels
560	//
561	DisplayOutliers(obj2,"low-ampl.","high-ampl.");
562	TLatex flattex;
563	flattex.SetTextSize(0.07);
564	const Double_t minl = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
565	const Double_t maxl = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
566	flattex.DrawLatex(minl+0.015*(maxl-minl),obj2->GetBinContent(obj2->GetMaximumBin())/1.35,
567	Form("Flatfield precision: %4.2f%%",
568	fun2->GetParameter(2)/fun2->GetParameter(1)*100.));
569
570	//
571	// RMS per Charge
572	//
573
574	c1.cd(2);
575	gPad->SetBorderMode(0);
576	gPad->SetTicks();
577	MHCamera obj3=(MHCamera)disp36.DrawCopy("hist");
578	//
579	// for the datacheck, fix the ranges!!
580	//
581	// obj3->SetMinimum(0.);
582	// obj3->SetMaximum(fChargeMax);
583	//
584	// Set the datacheck sizes:
585	//
586	FixDataCheckHist((TH1D*)obj3);
587	obj3->SetStats(kFALSE);
588	//
589	// set reference lines
590	//
591	// DisplayReferenceLines(obj3,0);
592
593	c1.cd(5);
594	gPad->SetBorderMode(0);
595	obj3->SetPrettyPalette();
596	obj3->Draw();
597
598	c1.cd(8);
599	gPad->SetBorderMode(0);
600	if (geomcam.InheritsFrom("MGeomCamMagic"))
601	DisplayDoubleProject(&disp36, "dead", "noisy");
602
603	//
604	// PHOTO ELECTRONS
605	//
606
607	c1.cd(3);
608	gPad->SetBorderMode(0);
609	gPad->SetTicks();
610	MHCamera obj4=(MHCamera)disp5.DrawCopy("hist");
611	//
612	// for the datacheck, fix the ranges!!
613	//
614	// obj3->SetMinimum(fChargeMin);
615	// obj3->SetMaximum(fChargeMax);
616	//
617	// Set the datacheck sizes:
618	//
619	FixDataCheckHist((TH1D*)obj4);
620	obj4->SetStats(kFALSE);
621	//
622	// set reference lines
623	//
624	// DisplayReferenceLines(obj3,0);
625
626	c1.cd(6);
627	gPad->SetBorderMode(0);
628	obj4->SetPrettyPalette();
629	obj4->Draw();
630
631	c1.cd(9);
632	gPad->SetBorderMode(0);
633	if (geomcam.InheritsFrom("MGeomCamMagic"))
634	DisplayDoubleProject(&disp5, "dead", "noisy");
635
636	//
637	// CONVERSION FACTORS
638	//
639	TCanvas &c2 = fDisplay->AddTab("Conversion");
640	c2.Divide(3,3);
641
642	c2.cd(1);
643	gPad->SetBorderMode(0);
644	gPad->SetTicks();
645	MHCamera obj5=(MHCamera)disp6.DrawCopy("hist");
646	//
647	// for the datacheck, fix the ranges!!
648	//
649	obj5->SetMinimum(fConvFADC2PheMin);
650	obj5->SetMaximum(fConvFADC2PheMax);
651	//
652	// Set the datacheck sizes:
653	//
654	FixDataCheckHist((TH1D*)obj5);
655	obj5->SetStats(kFALSE);
656	//
657	// set reference lines
658	//
659	DisplayReferenceLines(obj5,2);
660
661	c2.cd(4);
662	gPad->SetBorderMode(0);
663	obj5->SetPrettyPalette();
664	obj5->Draw();
665
666	c2.cd(7);
667	gPad->SetBorderMode(0);
668	if (geomcam.InheritsFrom("MGeomCamMagic"))
669	DisplayDoubleProject(&disp6, "noisy", "dead");
670
671	//
672	// QUANTUM EFFICIENCY
673	//
674	c2.cd(2);
675	gPad->SetBorderMode(0);
676	gPad->SetTicks();
677	MHCamera obj6=(MHCamera)disp8.DrawCopy("hist");
678	//
679	// for the datacheck, fix the ranges!!
680	//
681	obj6->SetMinimum(fQEMin);
682	obj6->SetMaximum(fQEMax);
683	//
684	// Set the datacheck sizes:
685	//
686	FixDataCheckHist((TH1D*)obj6);
687	obj6->SetStats(kFALSE);
688	//
689	// set reference lines
690	//
691	DisplayReferenceLines(obj6,0);
692
693	c2.cd(5);
694	gPad->SetBorderMode(0);
695	obj6->SetPrettyPalette();
696	obj6->Draw();
697
698	c2.cd(8);
699	gPad->SetBorderMode(0);
700	if (geomcam.InheritsFrom("MGeomCamMagic"))
701	DisplayDoubleProject(&disp8, "noisy", "dead");
702
703	//
704	// CONVERSION FADC TO PHOTONS
705	//
706
707	c2.cd(3);
708	gPad->SetBorderMode(0);
709	gPad->SetTicks();
710	MHCamera obj7=(MHCamera)disp37.DrawCopy("hist");
711	//
712	// for the datacheck, fix the ranges!!
713	//
714	obj7->SetMinimum(fConvFADC2PheMin);
715	obj7->SetMaximum(fConvFADC2PheMax);
716	//
717	// Set the datacheck sizes:
718	//
719	FixDataCheckHist((TH1D*)obj7);
720	obj7->SetStats(kFALSE);
721	//
722	// set reference lines
723	//
724	DisplayReferenceLines(obj7,1);
725
726	c2.cd(6);
727	gPad->SetBorderMode(0);
728	obj7->SetPrettyPalette();
729	obj7->Draw();
730	c2.cd(9);
731	gPad->SetBorderMode(0);
732	if (geomcam.InheritsFrom("MGeomCamMagic"))
733	DisplayDoubleProject(&disp37, "noisy", "dead");
734
735	//
736	// ARRIVAL TIMES
737	//
738	TCanvas &c3 = fDisplay->AddTab("AbsTimes");
739	c3.Divide(2,3);
740
741	c3.cd(1);
742	gPad->SetBorderMode(0);
743	gPad->SetTicks();
744	MHCamera obj10=(MHCamera)disp28.DrawCopy("hist");
745	//
746	// for the datacheck, fix the ranges!!
747	//
748	obj10->SetMinimum(fArrivalTimeMin);
749	obj10->SetMaximum(fArrivalTimeMax);
750	//
751	// Set the datacheck sizes:
752	//
753	FixDataCheckHist((TH1D*)obj10);
754	obj10->SetStats(kFALSE);
755	//
756	// set reference lines
757	//
758	DisplayReferenceLines(obj10,3);
759
760	c3.cd(3);
761	gPad->SetBorderMode(0);
762	obj10->SetPrettyPalette();
763	obj10->Draw();
764
765	c3.cd(5);
766	gPad->SetBorderMode(0);
767	if (geomcam.InheritsFrom("MGeomCamMagic"))
768	DisplayDoubleProject(&disp28, "early", "late");
769
770	//
771	// ARRIVAL TIMES JITTER
772	//
773	c3.cd(2);
774	gPad->SetBorderMode(0);
775	gPad->SetTicks();
776	MHCamera obj11=(MHCamera)disp29.DrawCopy("hist");
777	//
778	// for the datacheck, fix the ranges!!
779	//
780	// obj11->SetMinimum(fArrivalTimeMin);
781	// obj11->SetMaximum(fArrivalTimeMax);
782	//
783	// Set the datacheck sizes:
784	//
785	FixDataCheckHist((TH1D*)obj11);
786	obj11->SetStats(kFALSE);
787	//
788	// set reference lines
789	//
790	DisplayReferenceLines(obj11,4);
791
792	c3.cd(4);
793	gPad->SetBorderMode(0);
794	obj11->SetPrettyPalette();
795	obj11->Draw();
796
797	c3.cd(6);
798	gPad->SetBorderMode(0);
799	if (geomcam.InheritsFrom("MGeomCamMagic"))
800	DisplayDoubleProject(&disp29, "", "jittering");
801
802	//
803	// UNSUITABLE PIXELS
804	//
805	TCanvas &c4 = fDisplay->AddTab("Defect");
806	c4.Divide(2,2, 0.005, 0.005);
807
808	c4.cd(1);
809	gPad->SetBorderMode(0);
810	gPad->SetTicks();
811	MHCamera obj8=(MHCamera)disp24.DrawCopy("hist");
812	//
813	// for the datacheck, fix the ranges!!
814	//
815	const Double_t max = 11.;
816	obj8->SetMinimum(0.);
817	obj8->SetMaximum(max);
818	//
819	// Set the datacheck sizes:
820	//
821	FixDataCheckHist((TH1D*)obj8);
822	obj8->SetStats(kFALSE);
823
824	gStyle->SetPalette(1);
825	const Int_t numcol = gStyle->GetNumberOfColors()-3;
826
827	TPaveText *pave = new TPaveText(0.05,0.02,0.975,0.99);
828	pave->SetBit(kCanDelete);
829	pave->ConvertNDCtoPad();
830	pave->SetTextSize(0.045);
831	pave->AddText(" ");
832	TText *t1 = pave->AddText(Form("Signal smaller 4.5 Pedestal RMS: %3i pixels",
833	CountBadPixels(&disp24,1)));
834	t1->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol)));
835	t1->SetTextAlign(12);
836	TText *t4 = pave->AddText(Form("Low Gain Saturation: %3i pixels",
837	CountBadPixels(&disp24,2)));
838	t4->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol)));
839	t4->SetTextAlign(12);
840	TText *t5 = pave->AddText(Form("Mean Arr. Time In First Extraction Bin: %3i pixels",
841	CountBadPixels(&disp24,3)));
842	t5->SetTextColor(gStyle->GetColorPalette(Int_t(3./max*numcol)));
843	t5->SetTextAlign(12);
844	TText *t6 = pave->AddText(Form("Mean Arr. Time In Last 2 Extraction Bins: %3i pixels",
845	CountBadPixels(&disp24,4)));
846	t6->SetTextColor(gStyle->GetColorPalette(Int_t(4./max*numcol)));
847	t6->SetTextAlign(12);
848	TText *t10= pave->AddText(Form("High-Gain Histogram Overflow: %3i pixels",
849	CountBadPixels(&disp24,5 )));
850	t10->SetTextColor(gStyle->GetColorPalette(Int_t(5./max*numcol)));
851	t10->SetTextAlign(12);
852	TText *t11= pave->AddText(Form("Low-Gain Histogram Overflow: %3i pixels",
853	CountBadPixels(&disp24,6 )));
854	t11->SetTextColor(gStyle->GetColorPalette(Int_t(6./max*numcol)));
855	t11->SetTextAlign(12);
856	TText *t12= pave->AddText(Form("Presumably dead from Ped. Rms: %3i pixels",
857	CountBadPixels(&disp24,7 )));
858	t12->SetTextColor(gStyle->GetColorPalette(Int_t(7./max*numcol)));
859	t12->SetTextAlign(12);
860	TText *t13= pave->AddText(Form("Fluctuating Pulse Arrival Times: %3i pixels",
861	CountBadPixels(&disp24,8 )));
862	t13->SetTextColor(gStyle->GetColorPalette(Int_t(8./max*numcol)));
863	t13->SetTextAlign(12);
864	TText *t17 = pave->AddText(Form("Deviating Number of Photo-electrons: %3i pixels",
865	CountBadPixels(&disp24,9 )));
866	t17->SetTextColor(gStyle->GetColorPalette(Int_t(9./max*numcol)));
867	t17->SetTextAlign(12);
868	TText *t15= pave->AddText(Form("Too many Low-Gain Blackout Events: %3i pixels",
869	CountBadPixels(&disp24,10 )));
870	t15->SetTextColor(gStyle->GetColorPalette(Int_t(10./max*numcol)));
871	t15->SetTextAlign(12);
872	TText *t14= pave->AddText(Form("Previously Excluded: %3i pixels",
873	CountBadPixels(&disp24,11)));
874	t14->SetTextColor(gStyle->GetColorPalette(Int_t(11./max*numcol)));
875	t14->SetTextAlign(12);
876	pave->Draw();
877
878	c4.cd(3);
879	gPad->SetBorderMode(0);
880	obj8->Draw();
881	obj8->SetPrettyPalette();
882
883	//
884	// UNRELIABLE PIXELS
885	//
886
887	c4.cd(2);
888	gPad->SetBorderMode(0);
889	gPad->SetTicks();
890	MHCamera obj9=(MHCamera)disp25.DrawCopy("hist");
891	//
892	// for the datacheck, fix the ranges!!
893	//
894	const Double_t max2 = 9.;
895	obj9->SetMinimum(0.);
896	obj9->SetMaximum(max2);
897	//
898	// Set the datacheck sizes:
899	//
900	FixDataCheckHist((TH1D*)obj9);
901	obj9->SetStats(kFALSE);
902
903	gStyle->SetPalette(1);
904
905	TPaveText *pave2 = new TPaveText(0.025,0.02,0.95,0.99);
906	pave2->SetBit(kCanDelete);
907	pave2->ConvertNDCtoPad();
908	pave2->SetTextSize(0.05);
909	pave2->AddText(" ");
910	TText *t3 = pave2->AddText(Form("Signal Sigma smaller Pedestal RMS: %3i pixels",
911	CountBadPixels(&disp25,1)));
912	t3->SetTextColor(gStyle->GetColorPalette(Int_t(1./max2*numcol)));
913	t3->SetTextAlign(12);
914	TText *tt1 = pave2->AddText(Form("High Gain Signals could not be fitted: %3i pixels",
915	CountBadPixels(&disp25,3)));
916	tt1->SetTextColor(gStyle->GetColorPalette(Int_t(3./max2*numcol)));
917	tt1->SetTextAlign(12);
918	TText *tt2 = pave2->AddText(Form("Low Gain Signals could not be fitted: %3i pixels",
919	CountBadPixels(&disp25,4)));
920	tt2->SetTextColor(gStyle->GetColorPalette(Int_t(4./max2*numcol)));
921	tt2->SetTextAlign(12);
922	TText *tt3 = pave2->AddText(Form("Relative Arr. Times could not be fitted: %3i pixels",
923	CountBadPixels(&disp25,5)));
924	tt3->SetTextColor(gStyle->GetColorPalette(Int_t(5./max2*numcol)));
925	tt3->SetTextAlign(12);
926	TText *tt4 = pave2->AddText(Form("High Gain Signals Oscillation: %3i pixels",
927	CountBadPixels(&disp25,6)));
928	tt4->SetTextColor(gStyle->GetColorPalette(Int_t(6./max2*numcol)));
929	tt4->SetTextAlign(12);
930	TText *tt5 = pave2->AddText(Form("Low Gain Signals Oscillation: %3i pixels",
931	CountBadPixels(&disp25,7)));
932	tt5->SetTextColor(gStyle->GetColorPalette(Int_t(7./max2*numcol)));
933	tt5->SetTextAlign(12);
934	TText *tt6 = pave2->AddText(Form("Relative Arr. Times Oscillation: %3i pixels",
935	CountBadPixels(&disp25,8)));
936	tt6->SetTextColor(gStyle->GetColorPalette(Int_t(8./max2*numcol)));
937	tt6->SetTextAlign(12);
938	TText *tt8 = pave2->AddText(Form("Deviating global F-Factor: %3i pixels",
939	CountBadPixels(&disp25,9)));
940	tt8->SetTextColor(gStyle->GetColorPalette(Int_t(9./max2*numcol)));
941	tt8->SetTextAlign(12);
942	pave2->Draw();
943
944	c4.cd(4);
945	gPad->SetBorderMode(0);
946	obj9->SetPrettyPalette();
947	obj9->Draw();
948
949	if (IsRelTimes())
950	{
951	TCanvas &c5 = fDisplay->AddTab("RelTimes");
952	c5.Divide(2,3);
953
954	//
955	// MEAN REL. ARR. TIMES
956	//
957	c5.cd(1);
958	gPad->SetBorderMode(0);
959	gPad->SetTicks();
960	MHCamera obj10=(MHCamera)disp30.DrawCopy("hist");
961	//
962	// for the datacheck, fix the ranges!!
963	//
964	obj10->SetMinimum(fTimeOffsetMin);
965	obj10->SetMaximum(fTimeOffsetMax);
966	//
967	// Set the datacheck sizes:
968	//
969	FixDataCheckHist((TH1D*)obj10);
970	obj10->SetStats(kFALSE);
971	//
972	// set reference lines
973	//
974	DisplayReferenceLines(obj10,5);
975
976	c5.cd(3);
977	gPad->SetBorderMode(0);
978	obj10->SetPrettyPalette();
979	obj10->Draw();
980
981	c5.cd(5);
982	gPad->SetBorderMode(0);
983	if (geomcam.InheritsFrom("MGeomCamMagic"))
984	DisplayDoubleProject(&disp30, "early", "late");
985
986	//
987	// JITTER Rel. Arr. Times
988	//
989	c5.cd(2);
990	gPad->SetBorderMode(0);
991	gPad->SetTicks();
992	MHCamera obj11=(MHCamera)disp31.DrawCopy("hist");
993	//
994	// for the datacheck, fix the ranges!!
995	//
996	obj11->SetMinimum(fTimeResolutionMin);
997	obj11->SetMaximum(fTimeResolutionMax);
998	//
999	// Set the datacheck sizes:
1000	//
1001	FixDataCheckHist((TH1D*)obj11);
1002	obj11->SetStats(kFALSE);
1003	//
1004	// set reference lines
1005	//
1006	DisplayReferenceLines(obj11,6);
1007
1008	c5.cd(4);
1009	gPad->SetBorderMode(0);
1010	obj11->SetPrettyPalette();
1011	obj11->Draw();
1012
1013	c5.cd(6);
1014	gPad->SetBorderMode(0);
1015	if (geomcam.InheritsFrom("MGeomCamMagic"))
1016	DisplayDoubleProject(&disp31, "too stable", "jittering");
1017
1018	}
1019	return;
1020	}
1021
1022	if (fDisplayType == kNormalDisplay)
1023	{
1024
1025	// Charges
1026	TCanvas &c11 = fDisplay->AddTab("FitCharge");
1027	c11.Divide(2, 4);
1028
1029	disp1.CamDraw(c11, 1, 2, 5, 1);
1030	disp2.CamDraw(c11, 2, 2, 5, 1);
1031
1032	// Reduced Sigmas
1033	TCanvas &c12 = fDisplay->AddTab("RedSigma");
1034	c12.Divide(2,4);
1035
1036	disp3.CamDraw(c12, 1, 2, 5, 1);
1037	disp4.CamDraw(c12, 2, 2, 5, 1);
1038
1039	// F-Factor
1040	TCanvas &c13 = fDisplay->AddTab("Phe's");
1041	c13.Divide(3,4);
1042
1043	disp5.CamDraw(c13, 1, 3, 5, 1);
1044	disp6.CamDraw(c13, 2, 3, 5, 1);
1045	disp7.CamDraw(c13, 3, 3, 5, 1);
1046
1047	// QE's
1048	TCanvas &c14 = fDisplay->AddTab("QE's");
1049	c14.Divide(4,4);
1050
1051	disp8.CamDraw(c14, 1, 4, 5, 1);
1052	disp9.CamDraw(c14, 2, 4, 5, 1);
1053	disp10.CamDraw(c14, 3, 4, 5, 1);
1054	disp11.CamDraw(c14, 4, 4, 5, 1);
1055
1056	// Defects
1057	TCanvas &c15 = fDisplay->AddTab("Defect");
1058	// c15.Divide(5,2);
1059	c15.Divide(4,2);
1060
1061	/*
1062	disp23.CamDraw(c15, 1, 5, 0);
1063	disp24.CamDraw(c15, 2, 5, 0);
1064	disp25.CamDraw(c15, 3, 5, 0);
1065	disp26.CamDraw(c15, 4, 5, 0);
1066	disp27.CamDraw(c15, 5, 5, 0);
1067	*/
1068	disp24.CamDraw(c15, 1, 4, 0);
1069	disp25.CamDraw(c15, 2, 4, 0);
1070	disp26.CamDraw(c15, 3, 4, 0);
1071	disp27.CamDraw(c15, 4, 4, 0);
1072
1073	// Abs. Times
1074	TCanvas &c16 = fDisplay->AddTab("AbsTimes");
1075	c16.Divide(2,3);
1076
1077	disp28.CamDraw(c16, 1, 2, 5);
1078	disp29.CamDraw(c16, 2, 2, 5);
1079
1080	if (IsRelTimes())
1081	{
1082	// Rel. Times
1083	TCanvas &c17 = fDisplay->AddTab("RelTimes");
1084	c17.Divide(2,4);
1085
1086	disp30.CamDraw(c17, 1, 2, 5, 1);
1087	disp31.CamDraw(c17, 2, 2, 5, 1);
1088	}
1089
1090	return;
1091	}
1092
1093	if (fDisplayType == kFullDisplay)
1094	{
1095	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationChargeCam");
1096
1097	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1098	{
1099	cam->GetAverageHiGainSector(sector).DrawClone("all");
1100	cam->GetAverageLoGainSector(sector).DrawClone("all");
1101	}
1102
1103	// Charges
1104	TCanvas &c21 = fDisplay->AddTab("FitCharge");
1105	c21.Divide(2, 4);
1106
1107	disp1.CamDraw(c21, 1, 2, 2, 1);
1108	disp2.CamDraw(c21, 2, 2, 2, 1);
1109
1110	// Reduced Sigmas
1111	TCanvas &c23 = fDisplay->AddTab("RedSigma");
1112	c23.Divide(2,4);
1113
1114	disp3.CamDraw(c23, 1, 2, 2, 1);
1115	disp4.CamDraw(c23, 2, 2, 2, 1);
1116
1117	// F-Factor
1118	TCanvas &c24 = fDisplay->AddTab("Phe's");
1119	c24.Divide(3,5);
1120
1121	disp5.CamDraw(c24, 1, 3, 2, 1, 1);
1122	disp6.CamDraw(c24, 2, 3, 2, 1, 1);
1123	disp7.CamDraw(c24, 3, 3, 2, 1, 1);
1124
1125	// QE's
1126	TCanvas &c25 = fDisplay->AddTab("QE's");
1127	c25.Divide(4,5);
1128
1129	disp8.CamDraw(c25, 1, 4, 2, 1, 1);
1130	disp9.CamDraw(c25, 2, 4, 2, 1, 1);
1131	disp10.CamDraw(c25, 3, 4, 2, 1, 1);
1132	disp11.CamDraw(c25, 4, 4, 2, 1, 1);
1133
1134	// Validity
1135	TCanvas &c26 = fDisplay->AddTab("Valid");
1136	c26.Divide(4,2);
1137
1138	disp12.CamDraw(c26, 1, 4, 0);
1139	disp13.CamDraw(c26, 2, 4, 0);
1140	disp14.CamDraw(c26, 3, 4, 0);
1141	disp15.CamDraw(c26, 4, 4, 0);
1142
1143	// Other info
1144	TCanvas &c27 = fDisplay->AddTab("HiLoGain");
1145	c27.Divide(3,3);
1146
1147	disp16.CamDraw(c27, 1, 3, 0);
1148	disp17.CamDraw(c27, 2, 3, 1);
1149	disp18.CamDraw(c27, 3, 3, 1);
1150
1151	// Pickup
1152	TCanvas &c28 = fDisplay->AddTab("Pickup");
1153	c28.Divide(4,2);
1154
1155	disp19.CamDraw(c28, 1, 4, 0);
1156	disp20.CamDraw(c28, 2, 4, 0);
1157	disp21.CamDraw(c28, 3, 4, 0);
1158	disp22.CamDraw(c28, 4, 4, 0);
1159
1160	// Defects
1161	TCanvas &c29 = fDisplay->AddTab("Defect");
1162	// c29.Divide(5,2);
1163	c29.Divide(4,2);
1164
1165	disp24.CamDraw(c29, 1, 4, 0);
1166	disp25.CamDraw(c29, 2, 4, 0);
1167	disp26.CamDraw(c29, 3, 4, 0);
1168	disp27.CamDraw(c29, 4, 4, 0);
1169
1170	// Abs. Times
1171	TCanvas &c30 = fDisplay->AddTab("AbsTimes");
1172	c30.Divide(2,3);
1173
1174	disp28.CamDraw(c30, 1, 2, 2);
1175	disp29.CamDraw(c30, 2, 2, 1);
1176
1177	if (IsRelTimes())
1178	{
1179	// Rel. Times
1180	TCanvas &c31 = fDisplay->AddTab("RelTimes");
1181	c31.Divide(3,5);
1182
1183	disp30.CamDraw(c31, 1, 3, 2, 1, 1);
1184	disp31.CamDraw(c31, 2, 3, 2, 1, 1);
1185	disp32.CamDraw(c31, 3, 3, 4, 1, 1);
1186
1187	// Time Defects
1188	TCanvas &c32 = fDisplay->AddTab("DefTime");
1189	c32.Divide(2,2);
1190
1191	disp33.CamDraw(c32, 1, 2, 0);
1192	disp34.CamDraw(c32, 2, 2, 0);
1193
1194	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationRelTimeCam");
1195
1196	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1197	{
1198	cam->GetAverageHiGainSector(sector).DrawClone("fourierevents");
1199	cam->GetAverageLoGainSector(sector).DrawClone("fourierevents");
1200	}
1201
1202	}
1203
1204	return;
1205	}
1206	}
1207
1208
1209	void MJCalibration::DisplayReferenceLines(MHCamera *cam, const Int_t what) const
1210	{
1211
1212	const MGeomCam *geom = cam->GetGeometry();
1213
1214	Double_t x = geom->InheritsFrom("MGeomCamMagic") ? 397 : cam->GetNbinsX() ;
1215
1216	TLine line;
1217	line.SetLineStyle(kDashed);
1218	line.SetLineWidth(3);
1219	line.SetLineColor(kBlue);
1220
1221	TLine *l1 = NULL;
1222
1223	switch (what)
1224	{
1225	case 0:
1226	l1 = line.DrawLine(0, fRefQEInner, x, fRefQEInner);
1227	break;
1228	case 1:
1229	l1 = line.DrawLine(0, fRefConvFADC2PheInner, x, fRefConvFADC2PheInner);
1230	break;
1231	case 2:
1232	l1 = line.DrawLine(0, fRefFADC2PheInner, x, fRefFADC2PheInner );
1233	break;
1234	case 3:
1235	l1 = line.DrawLine(0, fRefArrivalTimeInner, x, fRefArrivalTimeInner );
1236	break;
1237	case 4:
1238	l1 = line.DrawLine(0, fRefArrivalTimeRmsInner, x, fRefArrivalTimeRmsInner );
1239	break;
1240	case 5:
1241	l1 = line.DrawLine(0, fRefTimeOffsetInner, x, fRefTimeOffsetInner );
1242	break;
1243	case 6:
1244	l1 = line.DrawLine(0, fRefTimeResolutionInner, x, fRefTimeResolutionInner );
1245	break;
1246	default:
1247	break;
1248	}
1249
1250	if (geom->InheritsFrom("MGeomCamMagic"))
1251	{
1252	const Double_t x2 = cam->GetNbinsX();
1253
1254	switch (what)
1255	{
1256	case 0:
1257	line.DrawLine(x2, fRefQEOuter, 398, fRefQEOuter);
1258	break;
1259	case 1:
1260	line.DrawLine(x2, fRefConvFADC2PheOuter, 398, fRefConvFADC2PheOuter );
1261	break;
1262	case 2:
1263	line.DrawLine(x2, fRefFADC2PheOuter, 398, fRefFADC2PheOuter);
1264	break;
1265	case 3:
1266	line.DrawLine(x2, fRefArrivalTimeOuter, 398, fRefArrivalTimeOuter);
1267	break;
1268	case 4:
1269	line.DrawLine(x2, fRefArrivalTimeRmsOuter, 398, fRefArrivalTimeRmsOuter);
1270	break;
1271	case 5:
1272	line.DrawLine(x2, fRefTimeOffsetOuter, 398, fRefTimeOffsetOuter);
1273	break;
1274	case 6:
1275	line.DrawLine(x2, fRefTimeResolutionOuter, 398, fRefTimeResolutionOuter);
1276	break;
1277	default:
1278	break;
1279	}
1280	}
1281
1282	TLegend *leg = new TLegend(0.6,0.85,0.9 ,0.95);
1283	leg->SetBit(kCanDelete);
1284	leg->AddEntry(l1, "Reference","l");
1285	leg->Draw();
1286	}
1287
1288	void MJCalibration::DisplayOutliers(TH1D hist, const char whatsmall, const char* whatbig) const
1289	{
1290
1291	const Int_t kNotDraw = 1<<9;
1292	TF1 *f = hist->GetFunction("gaus");
1293	f->ResetBit(kNotDraw);
1294
1295	const Float_t mean = f->GetParameter(1);
1296	const Float_t lolim = mean - 4.0*f->GetParameter(2);
1297	const Float_t uplim = mean + 4.0*f->GetParameter(2);
1298	const Stat_t dead = hist->Integral(0,hist->FindBin(lolim)-1);
1299	const Stat_t noisy = hist->Integral(hist->FindBin(uplim)+1,hist->GetNbinsX()+1);
1300
1301	const Double_t max = hist->GetBinContent(hist->GetMaximumBin());
1302
1303	const Double_t minl = hist->GetBinCenter(hist->GetXaxis()->GetFirst());
1304	const Double_t maxl = hist->GetBinCenter(hist->GetXaxis()->GetLast());
1305
1306	TLatex deadtex;
1307	deadtex.SetTextSize(0.07);
1308	deadtex.DrawLatex(minl+0.015*(maxl-minl),max/1.1,
1309	Form("%3i %s pixels",(Int_t)dead,whatsmall));
1310
1311	TLatex noisytex;
1312	noisytex.SetTextSize(0.07);
1313	noisytex.DrawLatex(minl+0.015*(maxl-minl),max/1.2,
1314	Form("%3i %s pixels",(Int_t)noisy,whatbig));
1315
1316	}
1317
1318	void MJCalibration::FixDataCheckHist(TH1D *hist) const
1319	{
1320
1321	hist->SetDirectory(NULL);
1322
1323	//
1324	// set the labels bigger
1325	//
1326	TAxis *xaxe = hist->GetXaxis();
1327	TAxis *yaxe = hist->GetYaxis();
1328
1329	xaxe->CenterTitle();
1330	yaxe->CenterTitle();
1331	xaxe->SetTitleSize(0.06);
1332	yaxe->SetTitleSize(0.06);
1333	xaxe->SetTitleOffset(0.8);
1334	yaxe->SetTitleOffset(0.85);
1335	xaxe->SetLabelSize(0.05);
1336	yaxe->SetLabelSize(0.05);
1337
1338	}
1339
1340	const Int_t MJCalibration::CountBadPixels(MHCamera *cam, const Int_t what) const
1341	{
1342	Int_t cnt = 0;
1343
1344	for (UInt_t pix=0; pix<cam->GetNumPixels(); pix++)
1345	if (TMath::Nint(cam->GetPixContent(pix)) == what)
1346	cnt++;
1347
1348	return cnt;
1349	}
1350
1351	// --------------------------------------------------------------------------
1352	//
1353	// Retrieve the output file written by WriteResult()
1354	//
1355	const char* MJCalibration::GetOutputFileName() const
1356	{
1357	return Form("calib%08d.root", fSequence.GetSequence());
1358	}
1359
1360	// --------------------------------------------------------------------------
1361	//
1362	// Read the following values from resource file:
1363	//
1364	// ConvFADC2PheMin
1365	// ConvFADC2PheMax
1366	// ConvFADC2PhotMin
1367	// ConvFADC2PhotMax
1368	//
1369	// QEMin
1370	// QEMax
1371	//
1372	// ArrivalTimeMin
1373	// ArrivalTimeMax
1374	//
1375	// TimeOffsetMin
1376	// TimeOffsetMax
1377	// TimeResolutionMin
1378	// TimeResolutionMax
1379	//
1380	// RefConvFADC2PheInner
1381	// RefConvFADC2PheOuter
1382	// RefConvFADC2PhotInner
1383	// RefConvFADC2PhotOuter
1384	//
1385	// RefQEInner
1386	// RefQEOuter
1387	//
1388	// RefArrivalTimeInner
1389	// RefArrivalTimeOuter
1390	// RefArrivalTimeRmsInner
1391	// RefArrivalTimeRmsOuter
1392	//
1393	// RefTimeOffsetInner
1394	// RefTimeOffsetOuter
1395	// RefTimeResolutionInner
1396	// RefTimeResolutionOuter
1397	//
1398	void MJCalibration::ReadReferenceFile()
1399	{
1400	TEnv refenv(fReferenceFile);
1401
1402	fConvFADC2PheMin = refenv.GetValue("ConvFADC2PheMin",fConvFADC2PheMin);
1403	fConvFADC2PheMax = refenv.GetValue("ConvFADC2PheMax",fConvFADC2PheMax);
1404	fConvFADC2PhotMin = refenv.GetValue("ConvFADC2PhotMin",fConvFADC2PhotMin);
1405	fConvFADC2PhotMax = refenv.GetValue("ConvFADC2PhotMax",fConvFADC2PhotMax);
1406	fQEMin = refenv.GetValue("QEMin",fQEMin);
1407	fQEMax = refenv.GetValue("QEMax",fQEMax);
1408	fArrivalTimeMin = refenv.GetValue("ArrivalTimeMin",fArrivalTimeMin);
1409	fArrivalTimeMax = refenv.GetValue("ArrivalTimeMax",fArrivalTimeMax);
1410	fTimeOffsetMin = refenv.GetValue("TimeOffsetMin",fTimeOffsetMin);
1411	fTimeOffsetMax = refenv.GetValue("TimeOffsetMax",fTimeOffsetMax);
1412	fTimeResolutionMin = refenv.GetValue("TimeResolutionMin",fTimeResolutionMin);
1413	fTimeResolutionMax = refenv.GetValue("TimeResolutionMax",fTimeResolutionMax);
1414
1415	fRefFADC2PheInner = refenv.GetValue("RefFADC2PheInner",fRefFADC2PheInner);
1416	fRefFADC2PheOuter = refenv.GetValue("RefFADC2PheOuter",fRefFADC2PheOuter);
1417	fRefConvFADC2PhotInner = refenv.GetValue("RefConvFADC2PhotInner",fRefConvFADC2PhotInner);
1418	fRefConvFADC2PhotOuter = refenv.GetValue("RefConvFADC2PhotOuter",fRefConvFADC2PhotOuter);
1419	fRefConvFADC2PheInner = refenv.GetValue("RefConvFADC2PheInner",fRefConvFADC2PheInner);
1420	fRefConvFADC2PheOuter = refenv.GetValue("RefConvFADC2PheOuter",fRefConvFADC2PheOuter);
1421	fRefQEInner = refenv.GetValue("RefQEInner",fRefQEInner);
1422	fRefQEOuter = refenv.GetValue("RefQEOuter",fRefQEOuter);
1423	fRefArrivalTimeInner = refenv.GetValue("RefArrivalTimeInner",fRefArrivalTimeInner);
1424	fRefArrivalTimeOuter = refenv.GetValue("RefArrivalTimeOuter",fRefArrivalTimeOuter);
1425	fRefArrivalTimeRmsInner = refenv.GetValue("RefArrivalTimeRmsInner",fRefArrivalTimeRmsInner);
1426	fRefArrivalTimeRmsOuter = refenv.GetValue("RefArrivalTimeRmsOuter",fRefArrivalTimeRmsOuter);
1427	fRefTimeOffsetInner = refenv.GetValue("RefTimeOffsetInner",fRefTimeOffsetInner);
1428	fRefTimeOffsetOuter = refenv.GetValue("RefTimeOffsetOuter",fRefTimeOffsetOuter);
1429	fRefTimeResolutionInner = refenv.GetValue("RefTimeResolutionInner",fRefTimeResolutionInner);
1430	fRefTimeResolutionOuter = refenv.GetValue("RefTimeResolutionOuter",fRefTimeResolutionOuter);
1431	}
1432
1433	// --------------------------------------------------------------------------
1434	//
1435	// Read the following values from resource file.
1436	//
1437	Bool_t MJCalibration::ReadHiLoCalibFile()
1438	{
1439	if (fExtractor && !fExtractor->HasLoGain())
1440	return kTRUE;
1441
1442	// if (!fIsHiLoCalibration)
1443	// return kTRUE;
1444
1445	// We use the night time stamp to determine the period
1446	// because the night must be in the sequence file
1447	const MTime &night = fSequence.GetNight();
1448	const Int_t period = night.GetMagicPeriod();
1449
1450	// Open resource file
1451	MEnv env(fHiLoCalibFile);
1452	if (!env.IsValid())
1453	{
1454	*fLog << err << "ERROR - Resource file " << fHiLoCalibFile;
1455	*fLog << " could not be opened... abort." << endl;
1456	return kFALSE;
1457	}
1458
1459	// Defined resource id
1460	const TString id = fSequence.IsMonteCarlo() ? "MC" : Form("%02d", period);
1461
1462	// Check for a valid entry for the correct period
1463	TString fname = env.GetValue(id, "");
1464	if (fname.IsNull())
1465	{
1466	*fLog << err << "ERROR - No entry for resource id '" << id;
1467	*fLog << "' found in " << fHiLoCalibFile << "... looking for default." << endl;
1468	return kFALSE;
1469	/*
1470	*fLog << warn << "WARNING - No entry for period " << period;
1471	*fLog << " found in " << fHiLoCalibFile << "... looking for default." << endl;
1472
1473	fname = env.GetValue("00", "");
1474	if (fname.IsNull())
1475	{
1476	*fLog << err << "ERROR - No default entry (00) found in ";
1477	*fLog << fHiLoCalibFile << "... abort." << endl;
1478	return kFALSE;
1479	}*/
1480	}
1481
1482	*fLog << inf << "Reading Hi-/Lo-Gain calibration constants from " << fname << endl;
1483
1484	// Open file with calibration constants
1485	TFile file(fname, "READ");
1486	if (!file.IsOpen())
1487	{
1488	*fLog << err << "ERROR - Couldn't open file " << fname << " for reading... abort." << endl;
1489	return kFALSE;
1490	}
1491
1492	// read calibration constants
1493	MHCamEvent hilocam;
1494	if (hilocam.Read()<=0)
1495	{
1496	*fLog << err << "ERROR - Unable to read MHCamEvent from " << fname << "... abort." << endl;
1497	return kFALSE;
1498	}
1499
1500	// Get histogram with constants
1501	MHCamera *hist = hilocam.GetHist();
1502	if (!hist)
1503	{
1504	*fLog << err << "ERROR - MHCamEvent from " << fname << " empty... abort." << endl;
1505	return kFALSE;
1506	}
1507
1508	// Do some sanity stuff
1509	if (fCalibrationCam.GetSize() < 1)
1510	fCalibrationCam.InitSize(hist->GetNumPixels());
1511
1512	if (fBadPixels.GetSize() < 1)
1513	fBadPixels.InitSize(hist->GetNumPixels());
1514
1515	if ((UInt_t)fCalibrationCam.GetSize() != hist->GetNumPixels())
1516	{
1517	*fLog << err << "ERROR - Size mismatch MHCamEvent and MCalibrationChargeCam.. abort." << endl;
1518	return kFALSE;
1519	}
1520
1521	// Copy the constants to their final location
1522	// FIXME: For what the hell do we need to have the constants in
1523	// in MCalibrationChargeCam?
1524	for (UInt_t i=0; i<hist->GetNumPixels(); i++)
1525	{
1526	hist->SetBit(MHCamera::kProfile);
1527	Double_t v = hist->GetBinContent(i);
1528	hist->SetBit(MHCamera::kErrorMean);
1529	Double_t e = hist->GetBinError(i);
1530	hist->ResetBit(MHCamera::kErrorMean);
1531	Double_t s = hist->GetBinError(i);
1532
1533	if (!hist->IsUsed(i))
1534	{
1535	fBadPixels[i].SetUncalibrated(MBadPixelsPix::kConversionHiLoNotValid);
1536	v = e = s = -1;
1537	}
1538
1539	MCalibrationChargePix &cpix = (MCalibrationChargePix&)fCalibrationCam[i];
1540	cpix.SetConversionHiLo(v);
1541	cpix.SetConversionHiLoErr(e);
1542	cpix.SetConversionHiLoSigma(s);
1543	}
1544
1545	return kTRUE;
1546	}
1547
1548	// --------------------------------------------------------------------------
1549	//
1550	// MJCalibration allows to setup several option by a resource file:
1551	// MJCalibration.Display: full, datacheck, normal
1552	// MJCalibration.RelTimeCalibration: yes,no
1553	// MJCalibration.DataCheck: yes,no
1554	// MJCalibration.Debug: yes,no
1555	// MJCalibration.UseBlindPixel: yes,no
1556	// MJCalibration.UsePINDiode: yes,no
1557	// MJCalibration.Geometry: MGeomCamMagic, MGeomCamECO1000
1558	//
1559	// Name of a file containing reference values (see ReadReferenceFile)
1560	// Prefix.ReferenceFile: filename
1561	// (see ReadReferenceFile)
1562	//
1563	// For more details see the class description and the corresponding Getters
1564	//
1565	Bool_t MJCalibration::CheckEnvLocal()
1566	{
1567	TString dis = GetEnv("Display", "");
1568	if (dis.BeginsWith("Full", TString::kIgnoreCase))
1569	SetFullDisplay();
1570	if (dis.BeginsWith("DataCheck", TString::kIgnoreCase))
1571	SetDataCheckDisplay();
1572	if (dis.BeginsWith("Normal", TString::kIgnoreCase))
1573	SetNormalDisplay();
1574
1575	if (!MJCalib::CheckEnvLocal())
1576	return kFALSE;
1577
1578	SetRelTimeCalibration(GetEnv("RelTimeCalibration", IsRelTimes()));
1579	SetDebug(GetEnv("Debug", IsDebug()));
1580
1581	SetUseBlindPixel(GetEnv("UseBlindPixel", IsUseBlindPixel()));
1582	SetUsePINDiode(GetEnv("UsePINDiode", IsUsePINDiode()));
1583	SetGeometry(GetEnv("Geometry", fGeometry));
1584
1585	fReferenceFile = GetEnv("ReferenceFile",fReferenceFile.Data());
1586	ReadReferenceFile();
1587
1588	fHiLoCalibFile = GetEnv("HiLoCalibFile",fHiLoCalibFile.Data());
1589
1590	/*
1591	if (IsUseMC() && !fHiLoCalibFile.EndsWith("_mc.root"))
1592	{
1593	if (!fHiLoCalibFile.EndsWith(".root"))
1594	{
1595	*fLog << warn << "WARNING - Hi-/Lo-Gain intercalibration file ";
1596	*fLog << fHiLoCalibFile << " has not .root as extension..." << endl;
1597	}
1598	else
1599	fHiLoCalibFile.Insert(fHiLoCalibFile.Length()-5, "_mc");
1600	}
1601	*/
1602
1603	return ReadHiLoCalibFile();
1604	}
1605
1606	void MJCalibration::InitBlindPixel(MExtractBlindPixel &blindext,
1607	MHCalibrationChargeBlindCam &blindcam)
1608	{
1609	const Int_t run = fSequence.GetLastRun();
1610
1611	//
1612	// Initialize the blind pixel. Unfortunately, there is a hardware
1613	// difference in the first blind pixel until run
1614	// gkSecondBlindPixelInstallation and the later setup. The first
1615	// needs to use a filter because of the length of spurious NSB photon
1616	// signals. The latter get better along extracting the amplitude
1617	// from a small window.
1618	//
1619	const MCalibrationBlindCamOneOldStyle one;
1620	const MCalibrationBlindCamTwoNewStyle two;
1621	const MCalibrationBlindCamThreeNewStyle three;
1622
1623	const MCalibrationBlindCam &blindresults =
1624	run<gkSecondBlindPixelInstallation ? static_cast<MCalibrationBlindCam>(one) :
1625	(run<gkThirdBlindPixelInstallation ? static_cast<MCalibrationBlindCam>(two) : static_cast<MCalibrationBlindCam>(three));
1626
1627	blindresults.Copy(fCalibrationBlindCam);
1628
1629	blindext.SetExtractionType(MExtractBlindPixel::kIntegral);
1630	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1631
1632	if (run<gkSecondBlindPixelInstallation)
1633	{
1634	blindext.SetRange(10,19,0,6);
1635	blindext.SetNSBFilterLimit(70);
1636	}
1637	else
1638	{
1639	blindext.SetRange(5,8,0,2);
1640	blindext.SetNSBFilterLimit(38);
1641	}
1642
1643	if (run>=gkThirdBlindPixelInstallation)
1644	blindext.SetDataType(MExtractBlindPixel::kRawEvt2);
1645	}
1646
1647	// --------------------------------------------------------------------------
1648	//
1649	// Execute the task list and the eventloop:
1650	//
1651	// - Check the colour of the files in fRuns (FindColor()), otherwise return
1652	// - Check for consistency between run numbers and number of files
1653	// - Add fRuns to MReadMarsFile
1654	// - Put into MParList:
1655	// 1) MPedestalCam (pedcam)
1656	// 2) MCalibrationQECam (fQECam)
1657	// 3) MCalibrationChargeCam (fCalibrationCam)
1658	// 4) MCalibrationRelTimeCam (fRelTimeCam) (only if flag IsRelTimes() is chosen)
1659	// 5) MBadPixelsCam (fBadPixels)
1660	// 6) MCalibrationChargePINDiode
1661	// 7) MCalibrationBlindPix
1662	// - Put into the MTaskList:
1663	// 1) MReadMarsFile
1664	// 2) MBadPixelsMerge
1665	// 3) MGeomApply
1666	// 4) MExtractor
1667	// 5) MExtractPINDiode
1668	// 6) MExtractBlindPixel
1669	// 7) MExtractTime (only if flag IsRelTimes() is chosen)
1670	// 8) MContinue(MFCosmics)
1671	// 9) MFillH("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode")
1672	// 10) MFillH("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam")
1673	// 11) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam")
1674	// 12) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillRelTime")
1675	// 13) MCalibrationChargeCalc
1676	// 14) MFillH("MHCalibrationRelTimeCam", "MArrivalTimeCam") (only if flag IsRelTimes() is chosen)
1677	// 15) MCalibrationRelTimeCalc
1678	// - Execute MEvtLoop
1679	// - DisplayResult()
1680	// - WriteResult()
1681	//
1682	Bool_t MJCalibration::Process(MPedestalCam &pedcam)
1683	{
1684	if (!fSequence.IsValid())
1685	{
1686	*fLog << err << "ERROR - Sequence invalid..." << endl;
1687	return kFALSE;
1688	}
1689
1690	*fLog << inf;
1691	fLog->Separator(GetDescriptor());
1692	*fLog << "Calculate calibration constants from Sequence #";
1693	*fLog << fSequence.GetSequence() << endl << endl;
1694
1695	// --------------------------------------------------------------------------------
1696
1697	if (!CheckEnv())
1698	return kFALSE;
1699
1700	// --------------------------------------------------------------------------------
1701
1702	// Setup Tasklist
1703	MParList plist;
1704	MTaskList tlist;
1705	plist.AddToList(&tlist);
1706	plist.AddToList(this); // take care of fDisplay!
1707
1708	MDirIter iter;
1709	if (fSequence.SetupCalRuns(iter, 0, !fSequence.IsMonteCarlo())<=0)
1710	return kFALSE;
1711
1712	//
1713	// Input containers
1714	//
1715	pedcam.SetName("MPedestalCam"); // MPedestalFundamental
1716	plist.AddToList(&pedcam);
1717	plist.AddToList(&fBadPixels);
1718
1719	//
1720	// Calibration Results containers
1721	//
1722	plist.AddToList(&fQECam);
1723	plist.AddToList(&fCalibrationCam);
1724	plist.AddToList(&fRelTimeCam);
1725	if (IsUseBlindPixel())
1726	plist.AddToList(&fCalibrationBlindCam);
1727	if (IsUsePINDiode())
1728	plist.AddToList(&fCalibrationPINDiode);
1729
1730	//
1731	// Initialize two histogram containers which could be modified in this class
1732	//
1733	MHCalibrationRelTimeCam reltimecam;
1734	MHCalibrationChargeCam chargecam;
1735	MHCalibrationChargeBlindCam blindcam;
1736	plist.AddToList(&chargecam);
1737
1738	if (IsUseBlindPixel())
1739	plist.AddToList(&blindcam);
1740	if (IsRelTimes())
1741	plist.AddToList(&reltimecam);
1742	//
1743	// Data Reading tasks
1744	//
1745	MReadMarsFile read("Events");
1746	MRawFileRead rawread(NULL);
1747
1748	if (!fSequence.IsMonteCarlo())
1749	{
1750	rawread.AddFiles(iter);
1751	tlist.AddToList(&rawread);
1752	}
1753	else
1754	{
1755	read.DisableAutoScheme();
1756	read.AddFiles(iter);
1757	tlist.AddToList(&read);
1758	}
1759
1760	//
1761	// Other Tasks
1762	//
1763
1764	// Set the default for data version earlier than 5, where no valid
1765	// trigger pattern exists. There should not be pin diode or other
1766	// types of events inside the calibration files which should be skipped,
1767	// anyway. So we set the default such that the MContinue ccalib
1768	// will never be executed.
1769	MTriggerPatternDecode trgpat;
1770	MFTriggerPattern fcalib("CalibFilter");
1771	fcalib.SetDefault(kFALSE);
1772	fcalib.DenyCalibration(MFTriggerPattern::kPrescaled);
1773
1774	MContinue ccalib(&fcalib,"ContTrigPattern");
1775
1776	MCalibrationPatternDecode decode;
1777	MGeomApply apply;
1778	apply.SetGeometry(fGeometry);
1779
1780	MBadPixelsMerge merge(&fBadPixels);
1781	MExtractPINDiode pinext;
1782	MExtractBlindPixel blindext;
1783
1784	if (IsUseBlindPixel())
1785	InitBlindPixel(blindext, blindcam);
1786
1787	// MExtractSlidingWindow extract2;
1788	// MExtractTimeHighestIntegral timehigh;
1789	MCalibrationChargeCalc calcalc;
1790	MCalibrationRelTimeCalc timecalc;
1791	calcalc.SetExtractor(fExtractor);
1792
1793	if (IsDebug())
1794	{
1795	chargecam.SetDebug();
1796	calcalc.SetDebug();
1797	}
1798
1799	//
1800	// Calibration histogramming
1801	//
1802	MFillH fillpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
1803	MFillH fillbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
1804	MFillH fillcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
1805	MFillH filltme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
1806	fillpin.SetBit(MFillH::kDoNotDisplay);
1807	fillbnd.SetBit(MFillH::kDoNotDisplay);
1808	fillcam.SetBit(MFillH::kDoNotDisplay);
1809	filltme.SetBit(MFillH::kDoNotDisplay);
1810
1811	//
1812	// Set default extractors in case, none has been set...
1813	//
1814	/*
1815	if (!fExtractor)
1816	fExtractor = &extract2;
1817	if (!fTimeExtractor)
1818	fTimeExtractor = &timehigh;
1819	*/
1820	MExtractTimeAndChargeSpline spline;
1821	if (!fExtractor)
1822	fExtractor = &spline;
1823	// if (!fTimeExtractor)
1824	// fTimeExtractor = &timehigh;
1825
1826	const Bool_t istimecharge = fExtractor->InheritsFrom("MExtractTimeAndCharge");
1827
1828	//
1829	// Look if the extractor is a pure charge or also a time extractor
1830	//
1831	if (istimecharge)
1832	{
1833	if (fExtractorCam.GetSize() == pedcam.GetSize())
1834	calcalc.SetPedestals(&fExtractorCam);
1835	else
1836	{
1837	*fLog << err << GetDescriptor() << "ERROR - ";
1838	*fLog << "Used Extractor derives from MExtractTimeAndCharge, " << endl;
1839	*fLog << "but MExtractorCam size " << fExtractorCam.GetSize() << " ";
1840	*fLog << "mismatch pedcam size " << pedcam.GetSize() << "! " << endl;
1841	return kFALSE;
1842	}
1843	}
1844
1845	//
1846	// Setup more tasks and tasklist
1847	//
1848	MTaskEnv taskenv("ExtractSignal");
1849	taskenv.SetDefault(fExtractor);
1850
1851	tlist.AddToList(&trgpat);
1852	if (fColor != MCalibrationCam::kCT1)
1853	tlist.AddToList(&ccalib);
1854	tlist.AddToList(&decode);
1855	tlist.AddToList(&merge);
1856	tlist.AddToList(&apply);
1857
1858	// Produce pedestal subtracted raw-data
1859	MPedestalSubtract pedsub;
1860	pedsub.SetPedestalCam(fExtractor->GetPedestals());
1861	tlist.AddToList(&pedsub);
1862
1863	MCalibColorSet colorset;
1864	if (fColor != MCalibrationCam::kNONE)
1865	colorset.SetExplicitColor(fColor);
1866	tlist.AddToList(&colorset);
1867
1868	tlist.AddToList(&taskenv);
1869
1870	if (IsUsePINDiode())
1871	tlist.AddToList(&pinext);
1872	if (IsUseBlindPixel())
1873	tlist.AddToList(&blindext);
1874
1875	MTaskEnv taskenv2("ExtractTime");
1876	if (!istimecharge)
1877	{
1878	taskenv2.SetDefault(fTimeExtractor);
1879
1880	if (IsRelTimes())
1881	tlist.AddToList(&taskenv2);
1882	}
1883
1884	//
1885	// Apply a filter against cosmics
1886	// (will have to be needed in the future
1887	// when the calibration hardware-trigger is working)
1888	//
1889	MFCosmics cosmics;
1890	cosmics.SetMaxEmptyPixels(0.05);
1891	cosmics.SetMaxAcceptedFraction(0.5); // max=0.5 cosmics
1892
1893	MContinue cont(&cosmics, "ContCosmics");
1894	tlist.AddToList(&cont);
1895
1896	if (IsRelTimes())
1897	{
1898	tlist.AddToList(&filltme);
1899	tlist.AddToList(&timecalc);
1900	}
1901
1902	tlist.AddToList(&fillcam);
1903
1904	if (IsUseBlindPixel())
1905	tlist.AddToList(&fillbnd);
1906	if (IsUsePINDiode())
1907	tlist.AddToList(&fillpin);
1908
1909	tlist.AddToList(&calcalc);
1910
1911
1912	MHCamEvent evt2(0, "Extra'd", "Extracted Calibration Signal;;S [cnts/sl]");
1913	MHCamEvent evt9(4, "ArrTm", "Extracted ArrivalTime;;T");
1914
1915	MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtractedSignal");
1916	MFillH fill9(&evt9, "MArrivalTimeCam", "FillArrivalTime");
1917
1918	tlist.AddToList(&fill2);
1919	tlist.AddToList(&fill9);
1920
1921	/*
1922	MFillH fillP("MHPulseShape", "", "FillPulseShape");
1923	fillP.SetNameTab("Pulse");
1924	tlist.AddToList(&fillP);
1925	*/
1926
1927	// Create and setup the eventloop
1928	MEvtLoop evtloop(fName);
1929	evtloop.SetParList(&plist);
1930	evtloop.SetDisplay(fDisplay);
1931	evtloop.SetLogStream(fLog);
1932	if (!SetupEnv(evtloop))
1933	return kFALSE;
1934
1935	if (!taskenv.GetTask() && !taskenv2.GetTask())
1936	{
1937	*fLog << err << "ERROR - Neither ExtractSignal nor ExtractTime initialized or both '<dummy>'." << endl;
1938	return kFALSE;
1939	}
1940
1941	if (!WriteTasks(taskenv.GetTask(), istimecharge ? 0 : taskenv2.GetTask()))
1942	return kFALSE;
1943
1944	// Execute first analysis
1945	const Bool_t rc = evtloop.Eventloop();
1946
1947	if (!fCalibrationPINDiode.IsValid())
1948	SetUsePINDiode(kFALSE);
1949
1950	const Int_t numexec = !fSequence.IsMonteCarlo() ? rawread.GetNumExecutions() : read.GetNumExecutions();
1951	if (numexec>0)
1952	{
1953	DisplayResult(plist);
1954	if (!WriteResult(plist))
1955	return kFALSE;
1956	}
1957
1958	if (!rc)
1959	{
1960	*fLog << err << GetDescriptor() << ": Failed." << endl;
1961	return kFALSE;
1962	}
1963
1964	// --------------------------------------------------------------------------------
1965
1966	if (fIsPixelCheck)
1967	{
1968	chargecam[fCheckedPixId].DrawClone("datacheck");
1969	chargecam(fCheckedPixId).DrawClone("datacheck");
1970
1971	if (IsRelTimes())
1972	{
1973	reltimecam[fCheckedPixId].DrawClone("");
1974	reltimecam(fCheckedPixId).DrawClone("");
1975	}
1976	}
1977
1978	*fLog << all << GetDescriptor() << ": Done." << endl;
1979
1980	return kTRUE;
1981	}
1982
1983	/*
1984	Bool_t MJCalibration::WriteEventloop(MEvtLoop &evtloop) const
1985	{
1986	if (IsNoStorage())
1987	return kTRUE;
1988
1989	if (fPathOut.IsNull())
1990	return kTRUE;
1991
1992	const TString oname(GetOutputFile());
1993
1994	*fLog << inf << "Writing to file: " << oname << endl;
1995
1996	TFile file(oname, fOverwrite?"RECREATE":"NEW", "File created by MJCalibration", 9);
1997	if (!file.IsOpen())
1998	{
1999	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
2000	return kFALSE;
2001	}
2002
2003	if (evtloop.Write(fName)<=0)
2004	{
2005	*fLog << err << "Unable to write MEvtloop to " << oname << endl;
2006	return kFALSE;
2007	}
2008
2009	return kTRUE;
2010	}
2011	*/
2012
2013	Bool_t MJCalibration::WriteTasks(MTask t1, MTask t2) const
2014	{
2015	if (IsNoStorage())
2016	return kTRUE;
2017
2018	TObjArray cont;
2019	if (t1)
2020	cont.Add(t1);
2021	if (t2)
2022	cont.Add(t2);
2023
2024	return WriteContainer(cont, GetOutputFileName(), fOverwrite?"RECREATE":"NEW");
2025	}
2026
2027	// --------------------------------------------------------------------------
2028	//
2029	// Write the result into the output file GetOutputFile(), if fOutputPath exists.
2030	//
2031	// The following containers are written:
2032	// - MStatusDisplay
2033	// - MCalibrationChargeCam
2034	// - MCalibrationBlindCam
2035	// - MCalibrationQECam
2036	// - MCalibrationChargePINDiode
2037	// - MBadPixelsCam
2038	//
2039	// If the flag kRelTimes is set, then also:
2040	// - MCalibrationRelTimeCam
2041	//
2042	Bool_t MJCalibration::WriteResult(MParList &plist)
2043	{
2044	if (IsNoStorage())
2045	return kTRUE;
2046
2047	TObjArray cont;
2048	cont.Add(&fBadPixels);
2049	cont.Add(&fCalibrationCam);
2050	cont.Add(&fQECam);
2051	cont.Add(&fCalibrationBlindCam);
2052	cont.Add(&fCalibrationPINDiode);
2053
2054	if (IsRelTimes())
2055	cont.Add(&fRelTimeCam);
2056
2057	if (fExtractorCam.GetSize() != 0)
2058	cont.Add(&fExtractorCam);
2059
2060	TObject *pedcam = plist.FindObject("MPedestalCam");
2061	if (!pedcam)
2062	*fLog << warn << " - WARNING - MPedestalCam (fundamental)... not found for writing!" << endl;
2063	else
2064	cont.Add(pedcam);
2065
2066	TObject *geom = plist.FindObject("MGeomCam");
2067	if (!geom)
2068	*fLog << warn << " - WARNING - MGeomCam... not found for writing!" << endl;
2069	else
2070	cont.Add(geom);
2071
2072	if (IsHistsStorage())
2073	{
2074	cont.Add(plist.FindObject("MHCalibrationChargeCam"));
2075	cont.Add(plist.FindObject("MHCalibrationChargeBlindCam"));
2076	cont.Add(plist.FindObject("MHCalibrationChargePINDiode"));
2077	if (IsRelTimes())
2078	cont.Add(plist.FindObject("MHCalibrationRelTimeCam"));
2079	}
2080
2081	return WriteContainer(cont, GetOutputFileName(), "UPDATE");
2082	}
2083
2084	void MJCalibration::DisplayDoubleProject(MHCamera cam, const char whatsmall, const char* whatbig) const
2085	{
2086
2087	TArrayI inner(1);
2088	inner[0] = 0;
2089
2090	TArrayI outer(1);
2091	outer[0] = 1;
2092
2093	TArrayI s1(3);
2094	s1[0] = 6;
2095	s1[1] = 1;
2096	s1[2] = 2;
2097
2098	TArrayI s2(3);
2099	s2[0] = 3;
2100	s2[1] = 4;
2101	s2[2] = 5;
2102
2103	TVirtualPad *pad = gPad;
2104	pad->Divide(2,1);
2105
2106	TH1D *inout[2];
2107
2108	for (int i=0; i<2; i++)
2109	{
2110	pad->cd(i+1);
2111	gPad->SetBorderMode(0);
2112	gPad->SetTicks();
2113
2114	inout[i] = cam->ProjectionS(TArrayI(), TArrayI(1,&i), i==0 ? "Inner" : "Outer");
2115	FixDataCheckHist(inout[i]);
2116	inout[i]->SetTitle(Form("%s %s",cam->GetTitle(),i==0 ? "Inner" : "Outer"));
2117	inout[i]->SetDirectory(NULL);
2118	inout[i]->SetLineColor(kRed+i);
2119	inout[i]->SetBit(kCanDelete);
2120	inout[i]->Draw();
2121	//
2122	// Display the outliers as dead and noisy pixels
2123	//
2124	if (!inout[i]->Fit("gaus","0Q"))
2125	DisplayOutliers(inout[i],whatsmall,whatbig);
2126
2127	gPad->Modified();
2128	gPad->Update();
2129	TPaveStats st = (TPaveStats)inout[i]->GetListOfFunctions()->FindObject("stats");
2130	st->SetY1NDC(0.6);
2131	st->SetY2NDC(0.9);
2132	st->SetX1NDC(0.55);
2133	st->SetX2NDC(0.99);
2134	gPad->Modified();
2135	gPad->Update();
2136
2137	TLegend *leg2 = new TLegend(0.55,0.4,0.99,0.6);
2138
2139	//
2140	// Display the two half of the camera separately
2141	//
2142	TH1D *half[2];
2143	half[0] = cam->ProjectionS(s1, TArrayI(1,&i), "Sector 6-1-2");
2144	half[1] = cam->ProjectionS(s2, TArrayI(1,&i), "Sector 3-4-5");
2145
2146	for (int j=0; j<2; j++)
2147	{
2148	half[j]->SetLineColor(kRed+i+2*j+1);
2149	half[j]->SetDirectory(NULL);
2150	half[j]->SetBit(kCanDelete);
2151	half[j]->Draw("same");
2152	leg2->AddEntry(half[j], half[j]->GetName(), "l");
2153	}
2154	leg2->Draw();
2155	}
2156	}

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