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source: trunk/MagicSoft/Mars/mjobs/MJCalibration.cc@ 8502

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Last change on this file since 8502 was 8502, checked in by tbretz, 18 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	! Author(s): Markus Gaug, 02/2004 <mailto:markus@ifae.es>
20	!
21	! Copyright: MAGIC Software Development, 2000-2007
22	!
23	!
24	\* ======================================================================== */
25
26	/////////////////////////////////////////////////////////////////////////////
27	//
28	// MJCalibration
29	//
30	// Do one calibration loop over serious of runs with the same pulser
31	// colour and the same intensity. The following containers (rectangular) and
32	// tasks (ellipses) are called to produce an MCalibrationChargeCam and to
33	// update the MCalibrationQECam: (MCalibrate is not called from this class)
34	//
35	//Begin_Html
36	/*
37	<img src="images/CalibClasses.gif">
38	*/
39	//End_Html
40	//
41	// Different signal extractors can be set with the command SetExtractor()
42	// Only extractors deriving from MExtractor can be set, default is MExtractSlidingWindow
43	//
44	// Different arrival time extractors can be set with the command SetTimeExtractor()
45	// Only extractors deriving from MExtractTime can be set, default is MExtractTimeHighestIntegral
46	//
47	// At the end of the eventloop, plots and results are displayed, depending on
48	// the flags set (see DisplayResult())
49	//
50	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
51	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
52	// Otherwise, (default: SetNormalDisplay()), a good selection of plots is given
53	//
54	// The absolute light calibration devices Blind Pixel and PIN Diode can be switched on
55	// and off with the commands:
56	//
57	// - SetUseBlindPixel(Bool_t )
58	// - SetUsePINDiode(Bool_t )
59	//
60	// See also: MHCalibrationChargePix, MHCalibrationChargeCam, MHGausEvents
61	// MHCalibrationChargeBlindPix, MHCalibrationChargePINDiode
62	// MCalibrationChargePix, MCalibrationChargeCam, MCalibrationChargeCalc
63	// MCalibrationBlindPix, MCalibrationChargePINDiode,
64	// MCalibrationQECam, MBadPixelsPix, MBadPixelsCam
65	//
66	// If the flag RelTimeCalibration() is set, a calibration of the relative arrival
67	// times is also performed. The following containers (rectangular) and
68	// tasks (ellipses) are called to produce an MCalibrationRelTimeCam used by
69	// MCalibrateTime to correct timing offset between pixels: (MCalibrateTime is not
70	// called from this class)
71	//
72	//Begin_Html
73	/*
74	<img src="images/RelTimeClasses.gif">
75	*/
76	//End_Html
77	//
78	// Different arrival time extractors can be set directly with the command
79	// SetTimeExtractor(MExtractor *)
80	//
81	// Resource file entries are case sensitive!
82	//
83	// See also: MHCalibrationRelTimePix, MHCalibrationRelTimeCam, MHGausEvents
84	// MCalibrationRelTimePix, MCalibrationRelTimeCam
85	// MBadPixelsPix, MBadPixelsCam
86	//
87	/////////////////////////////////////////////////////////////////////////////
88	#include "MJCalibration.h"
89
90	#include <TFile.h>
91	#include <TF1.h>
92	#include <TStyle.h>
93	#include <TCanvas.h>
94	#include <TSystem.h>
95	#include <TLine.h>
96	#include <TLatex.h>
97	#include <TLegend.h>
98	#include <TRegexp.h>
99	#include <TPaveText.h>
100	#include <TPaveStats.h>
101	#include <TEnv.h>
102
103	#include "MLog.h"
104	#include "MLogManip.h"
105
106	#include "MEnv.h"
107	#include "MRunIter.h"
108	#include "MSequence.h"
109	#include "MParList.h"
110	#include "MTaskList.h"
111	#include "MEvtLoop.h"
112
113	#include "MHCamera.h"
114	#include "MGeomCam.h"
115
116	#include "MCalibrationPatternDecode.h"
117	#include "MCalibrationCam.h"
118	#include "MCalibrationQECam.h"
119	#include "MCalibrationQEPix.h"
120	#include "MCalibrationChargeCam.h"
121	#include "MCalibrationChargePix.h"
122	#include "MCalibrationChargePINDiode.h"
123	#include "MCalibrationBlindPix.h"
124	#include "MCalibrationBlindCam.h"
125	#include "MCalibrationBlindCamOneOldStyle.h"
126	#include "MCalibrationBlindCamTwoNewStyle.h"
127	#include "MCalibrationBlindCamThreeNewStyle.h"
128	#include "MCalibrationChargeCalc.h"
129	#include "MCalibColorSet.h"
130	#include "MCalibrationRelTimeCam.h"
131	#include "MCalibrationRelTimeCalc.h"
132
133	#include "MHGausEvents.h"
134	#include "MHCalibrationCam.h"
135	#include "MHCalibrationChargeCam.h"
136	#include "MHCalibrationChargeBlindCam.h"
137	#include "MHCalibrationChargePINDiode.h"
138	#include "MHCalibrationRelTimeCam.h"
139	#include "MHCalibrationPix.h"
140
141	#include "MHCamEvent.h"
142
143	#include "MReadMarsFile.h"
144	#include "MPedCalcPedRun.h"
145	#include "MRawFileRead.h"
146	#include "MGeomApply.h"
147	#include "MPedestalSubtract.h"
148	#include "MTaskEnv.h"
149	#include "MBadPixelsMerge.h"
150	#include "MBadPixelsCam.h"
151	#include "MExtractTime.h"
152	#include "MExtractor.h"
153	#include "MExtractPINDiode.h"
154	#include "MExtractBlindPixel.h"
155	#include "MExtractTimeAndChargeSpline.h"
156	#include "MFCosmics.h"
157	#include "MFTriggerPattern.h"
158	#include "MContinue.h"
159	#include "MFillH.h"
160
161	#include "MTriggerPatternDecode.h"
162
163	#include "MArrivalTimeCam.h"
164
165	#include "MStatusDisplay.h"
166
167	ClassImp(MJCalibration);
168
169	using namespace std;
170
171	const Int_t MJCalibration::gkIFAEBoxInaugurationRun = 20113;
172	const Int_t MJCalibration::gkSecondBlindPixelInstallation = 31693;
173	const Int_t MJCalibration::gkSpecialPixelsContInstallation = 34057;
174	const Int_t MJCalibration::gkThirdBlindPixelInstallation = 43308;
175	const TString MJCalibration::fgReferenceFile = "mjobs/calibrationref.rc";
176	const TString MJCalibration::fgHiLoCalibFile = "resources/hilocalib.rc";
177
178	// --------------------------------------------------------------------------
179	//
180	// Default constructor.
181	//
182	// - fExtractor to NULL, fTimeExtractor to NULL, fColor to kNONE,
183	// fDisplay to kNormalDisplay, kRelTimes to kFALSE, kataCheck to kFALSE, kDebug to kFALSE
184	// - SetUseBlindPixel()
185	// - SetUsePINDiode()
186	//
187	MJCalibration::MJCalibration(const char name, const char title)
188	: fExtractor(NULL), fTimeExtractor(NULL),
189	fColor(MCalibrationCam::kNONE), fDisplayType(kDataCheckDisplay),
190	fGeometry("MGeomCamMagic")
191	{
192
193	fName = name ? name : "MJCalibration";
194	fTitle = title ? title : "Tool to create the calibration constants for one calibration run";
195
196	//SetHiLoCalibration();
197	SetRelTimeCalibration();
198	SetDebug(kFALSE);
199
200	SetReferenceFile();
201	SetHiLoCalibFile();
202
203	fConvFADC2PheMin = 0.;
204	fConvFADC2PheMax = 1.5;
205	fConvFADC2PhotMin = 0.;
206	fConvFADC2PhotMax = 10.;
207	fQEMin = 0.;
208	fQEMax = 0.3;
209	fArrivalTimeMin = 1.;
210	fArrivalTimeMax = 10.;
211	fTimeOffsetMin = -3.;
212	fTimeOffsetMax = 3.;
213	fTimeResolutionMin = 0.;
214	fTimeResolutionMax = 1.;
215
216	fRefFADC2PheInner = 0.14;
217	fRefFADC2PheOuter = 0.4;
218	fRefConvFADC2PheInner = 0.14;
219	fRefConvFADC2PheOuter = 0.52;
220	fRefQEInner = 0.18;
221	fRefQEOuter = 0.12;
222	fRefArrivalTimeInner = 4.5;
223	fRefArrivalTimeOuter = 5.0;
224	fRefArrivalTimeRmsInner = 0.5;
225	fRefArrivalTimeRmsOuter = 0.5;
226	fRefTimeOffsetOuter = 0.62;
227	fRefTimeResolutionInner = 0.12;
228	fRefTimeResolutionOuter = 0.09;
229
230	}
231
232	void MJCalibration::DrawTab(MParList &plist, const char cont, const char name, Option_t *opt)
233	{
234	TObject *obj = plist.FindObject(cont);
235	if (!obj)
236	return;
237
238	fDisplay->AddTab(name);
239	obj->DrawClone(opt);
240	}
241
242	void MJCalibration::DrawBadPixel(TPaveText &pave, const MHCamera &h, Int_t n, Float_t f, const char *str) const
243	{
244	Int_t cnt = 0;
245	for (UInt_t pix=0; pix<h.GetNumPixels(); pix++)
246	if (TMath::Nint(h.GetPixContent(pix)) == n)
247	cnt++;
248
249	const TString txt = Form(n<10?" %d) %s%3i pixels":"%d) %s%3i pixels", n, str, cnt);
250
251	TText *p = pave.AddText(txt);
252	p->SetTextColor(gStyle->GetColorPalette(TMath::FloorNint((n-1)*f)));
253	p->SetTextAlign(12);
254	}
255
256	// --------------------------------------------------------------------------
257	//
258	// Display the results in MStatusDisplay:
259	//
260	// - Add "Calibration" to the MStatusDisplay title
261	// - Retrieve the MGeomCam from MParList
262	// - Initialize the following MHCamera's:
263	// 1) MCalibrationPix::GetMean()
264	// 2) MCalibrationPix::Sigma()
265	// 3) MCalibrationChargePix::GetRSigma()
266	// 4) MCalibrationChargePix::GetRSigmaPerCharge()
267	// 5) MCalibrationChargePix::GetPheFFactorMethod()
268	// 6) MCalibrationChargePix::GetMeanConvFADC2Phe()
269	// 7) MCalibrationChargePix::GetMeanFFactorFADC2Phot()
270	// 8) MCalibrationQEPix::GetQECascadesFFactor()
271	// 9) MCalibrationQEPix::GetQECascadesBlindPixel()
272	// 10) MCalibrationQEPix::GetQECascadesPINDiode()
273	// 11) MCalibrationQEPix::GetQECascadesCombined()
274	// 12) MCalibrationQEPix::IsAverageQEFFactorAvailable()
275	// 13) MCalibrationQEPix::IsAverageQEBlindPixelAvailable()
276	// 14) MCalibrationQEPix::IsAverageQEPINDiodeAvailable()
277	// 15) MCalibrationQEPix::IsAverageQECombinedAvailable()
278	// 16) MCalibrationChargePix::IsHiGainSaturation()
279	// 17) MCalibrationPix::GetHiLoMeansDivided()
280	// 18) MCalibrationPix::GetHiLoSigmasDivided()
281	// 19) MCalibrationChargePix::GetHiGainPickup()
282	// 20) MCalibrationChargePix::GetLoGainPickup()
283	// 21) MCalibrationChargePix::GetHiGainBlackout()
284	// 22) MCalibrationChargePix::GetLoGainBlackout()
285	// 23) MCalibrationPix::IsExcluded()
286	// 24) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnsuitableRun)
287	// 25) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnreliableRun)
288	// 26) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kHiGainOscillating)
289	// 27) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kLoGainOscillating)
290	// 28) MCalibrationChargePix::GetAbsTimeMean()
291	// 29) MCalibrationChargePix::GetAbsTimeRms()
292	//
293	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
294	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
295	// and otherwise, (default: SetNormalDisplay()), a good selection of plots is given
296	//
297	void MJCalibration::DisplayResult(MParList &plist)
298	{
299	if (!fDisplay)
300	return;
301
302	TString drawoption = "nonew ";
303	if (fDisplayType == kDataCheckDisplay)
304	drawoption += "datacheck";
305	if (fDisplayType == kFullDisplay)
306	drawoption += "all";
307
308	if (IsUsePINDiode())
309	DrawTab(plist, "MHCalibrationChargePINDiode", "PINDiode", drawoption);
310	if (IsUseBlindPixel())
311	DrawTab(plist, "MHCalibrationChargeBlindCam", "BlindPix", drawoption);
312	if (IsRelTimes())
313	DrawTab(plist, "MHCalibrationRelTimeCam", "Time", drawoption);
314	DrawTab(plist, "MHCalibrationChargeCam", "Charge", drawoption);
315
316	//
317	// Update display
318	//
319	TString title = fDisplay->GetTitle();
320	title += "-- Calibration ";
321	title += Form("calib%08d", fSequence.GetSequence());
322	title += " --";
323	fDisplay->SetTitle(title);
324
325	//
326	// Get container from list
327	//
328	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
329
330	// Create histograms to display
331	MHCamera disp1 (geomcam, "Charge", "Fitted Mean Signal (Charges)");
332	MHCamera disp2 (geomcam, "SigmaCharge", "Sigma of Fitted Signal");
333	MHCamera disp3 (geomcam, "RSigma", "Reduced Sigmas");
334	MHCamera disp4 (geomcam, "RSigmaPerCharge", "Reduced Sigma per Charge");
335	MHCamera disp5 (geomcam, "NumPhes", "Number Photo-electrons");
336	MHCamera disp6 (geomcam, "ConvFADC2Phes", "Phes per Charge (Before Flat-Field)");
337	MHCamera disp7 (geomcam, "TotalFFactor", "Total F-Factor(F-Factor Method)");
338	MHCamera disp8 (geomcam, "CascadesQEFFactor", "Cascades QE (F-Factor Method)");
339	MHCamera disp9 (geomcam, "CascadesQEBlindPix","Cascades QE (Blind Pixel Method)");
340	MHCamera disp10(geomcam, "CascadesQEPINDiode","Cascades QE (PIN Diode Method)");
341	MHCamera disp11(geomcam, "CascadesQECombined","Cascades QE (Combined Method)");
342	MHCamera disp12(geomcam, "FFactorValid", "Pixels with Valid F-Factor Calibration");
343	MHCamera disp13(geomcam, "BlindPixelValid", "Pixels with valid BlindPixel Calibration");
344	MHCamera disp14(geomcam, "PINdiodeValid", "Pixels with Valid PINDiode Calibration");
345	MHCamera disp15(geomcam, "CombinedValid", "Pixels with Valid Combined Calibration");
346	MHCamera disp16(geomcam, "Saturation", "Pixels with Saturated Hi Gain");
347	MHCamera disp17(geomcam, "ConversionMeans", "Conversion HiGain.vs.LoGain Means");
348	MHCamera disp18(geomcam, "ConversionSigmas", "Conversion HiGain.vs.LoGain Sigmas");
349	MHCamera disp19(geomcam, "HiGainPickup", "Number Pickup Events Hi Gain");
350	MHCamera disp20(geomcam, "LoGainPickup", "Number Pickup Events Lo Gain");
351	MHCamera disp21(geomcam, "HiGainBlackout", "Number Blackout Events Hi Gain");
352	MHCamera disp22(geomcam, "LoGainBlackout", "Number Blackout Events Lo Gain");
353	MHCamera disp23(geomcam, "Excluded", "Pixels Previously Excluded");
354	MHCamera disp24(geomcam, "UnSuitable", "Pixels NOT Suited for Further Analysis");
355	MHCamera disp25(geomcam, "UnReliable", "Pixels Suitable, but NOT Reliable for Further Analysis");
356	MHCamera disp26(geomcam, "HiGainOscillating", "Oscillating Pixels High Gain");
357	MHCamera disp27(geomcam, "LoGainOscillating", "Oscillating Pixels Low Gain");
358	MHCamera disp28(geomcam, "AbsTimeMean", "Abs. Arrival Times");
359	MHCamera disp29(geomcam, "AbsTimeRms", "RMS of Arrival Times");
360	MHCamera disp30(geomcam, "MeanTime", "Mean Rel. Arrival Times");
361	MHCamera disp31(geomcam, "SigmaTime", "Sigma Rel. Arrival Times");
362	MHCamera disp32(geomcam, "TimeProb", "Probability of Time Fit");
363	MHCamera disp33(geomcam, "TimeNotFitValid", "Pixels with not valid Fit Results");
364	MHCamera disp34(geomcam, "TimeOscillating", "Oscillating Pixels");
365	MHCamera disp35(geomcam, "TotalConv", "Conversion Factor to Photons");
366	MHCamera disp36(geomcam, "RMSperMean", "Charge histogram RMS per Mean");
367	MHCamera disp37(geomcam, "TotalConvPhe", "Conversion Factor to equiv. Phe's");
368
369	// Fitted charge means and sigmas
370	disp1.SetCamContent(fCalibrationCam, 0);
371	disp1.SetCamError( fCalibrationCam, 1);
372	disp2.SetCamContent(fCalibrationCam, 2);
373	disp2.SetCamError( fCalibrationCam, 3);
374
375	// Reduced Sigmas and reduced sigmas per charge
376	disp3.SetCamContent(fCalibrationCam, 5);
377	disp3.SetCamError( fCalibrationCam, 6);
378	disp4.SetCamContent(fCalibrationCam, 7);
379	disp4.SetCamError( fCalibrationCam, 8);
380
381	// F-Factor Method
382	disp5.SetCamContent(fCalibrationCam, 9);
383	disp5.SetCamError( fCalibrationCam, 10);
384	disp6.SetCamContent(fCalibrationCam, 11);
385	disp6.SetCamError( fCalibrationCam, 12);
386	disp7.SetCamContent(fCalibrationCam, 13);
387	disp7.SetCamError( fCalibrationCam, 14);
388
389	// Quantum Efficiencies
390	disp8.SetCamContent (fQECam, 0 );
391	disp8.SetCamError (fQECam, 1 );
392	disp9.SetCamContent (fQECam, 2 );
393	disp9.SetCamError (fQECam, 3 );
394	disp10.SetCamContent(fQECam, 4 );
395	disp10.SetCamError (fQECam, 5 );
396	disp11.SetCamContent(fQECam, 6 );
397	disp11.SetCamError (fQECam, 7 );
398
399	// Valid flags
400	disp12.SetCamContent(fQECam, 8 );
401	disp13.SetCamContent(fQECam, 9 );
402	disp14.SetCamContent(fQECam, 10);
403	disp15.SetCamContent(fQECam, 11);
404
405	// Conversion Hi-Lo
406	disp16.SetCamContent(fCalibrationCam, 25);
407	disp17.SetCamContent(fCalibrationCam, 16);
408	disp17.SetCamError (fCalibrationCam, 17);
409	disp18.SetCamContent(fCalibrationCam, 18);
410	disp18.SetCamError (fCalibrationCam, 19);
411
412	// Pickup and Blackout
413	disp19.SetCamContent(fCalibrationCam, 21);
414	disp20.SetCamContent(fCalibrationCam, 22);
415	disp21.SetCamContent(fCalibrationCam, 23);
416	disp22.SetCamContent(fCalibrationCam, 24);
417
418	// Pixels with defects
419	disp23.SetCamContent(fCalibrationCam, 20);
420	disp24.SetCamContent(fBadPixels, 6);
421	disp25.SetCamContent(fBadPixels, 7);
422
423	// Oscillations
424	disp26.SetCamContent(fBadPixels, 10);
425	disp27.SetCamContent(fBadPixels, 11);
426
427	// Arrival Times
428	disp28.SetCamContent(fCalibrationCam, 26);
429	disp28.SetCamError( fCalibrationCam, 27);
430	disp29.SetCamContent(fCalibrationCam, 27);
431
432	// RMS and Mean
433	disp36.SetCamContent(fCalibrationCam,32);
434	disp36.SetCamError(fCalibrationCam,33);
435
436	disp1.SetYTitle("Q [FADC cnts]");
437	disp2.SetYTitle("\\sigma_{Q} [FADC cnts]");
438
439	disp3.SetYTitle("\\sqrt{\\sigma^{2}_{Q} - RMS^{2}_{Ped}} [FADC cnts]");
440	disp4.SetYTitle("Red.Sigma/<Q> [1]");
441
442	disp5.SetYTitle("Photo-electons [1]");
443	disp6.SetYTitle("Phes/<Q> [FADC cnts^{-1}]");
444	disp7.SetYTitle("Total F-Factor [1]");
445
446	disp8.SetYTitle("QE [1]");
447	disp9.SetYTitle("QE [1]");
448	disp10.SetYTitle("QE [1]");
449	disp11.SetYTitle("QE [1]");
450
451	disp12.SetYTitle("[1]");
452	disp13.SetYTitle("[1]");
453	disp14.SetYTitle("[1]");
454	disp15.SetYTitle("[1]");
455	disp16.SetYTitle("[1]");
456
457	disp17.SetYTitle("<Q>(High)/<Q>(Low) [1]");
458	disp18.SetYTitle("\\sigma_{Q}(High)/\\sigma_{Q}(Low) [1]");
459
460	disp19.SetYTitle("[1]");
461	disp20.SetYTitle("[1]");
462	disp21.SetYTitle("[1]");
463	disp22.SetYTitle("[1]");
464	// disp23.SetYTitle("[1]");
465	// disp24.SetYTitle("[1]");
466	// disp25.SetYTitle("[1]");
467	disp26.SetYTitle("[1]");
468	disp27.SetYTitle("[1]");
469
470	disp28.SetYTitle("Mean Abs. Time [FADC sl.]");
471	disp29.SetYTitle("RMS Abs. Time [FADC sl.]");
472	disp35.SetYTitle("Conv.Factor [Ph/FADC cnts]");
473	disp36.SetYTitle("Charge RMS/<Q> [1]");
474	disp37.SetYTitle("Conv.Factor [Phe/FADC cnts]");
475
476	for (UInt_t i=0;i<geomcam.GetNumPixels();i++)
477	{
478
479	MCalibrationChargePix &pix = (MCalibrationChargePix&)fCalibrationCam[i];
480	MCalibrationQEPix &qe = (MCalibrationQEPix&)fQECam[i];
481
482	if (!pix.IsFFactorMethodValid())
483	continue;
484
485	const Float_t convphe = pix.GetMeanConvFADC2Phe();
486	const Float_t quaeff = qe.GetQECascadesFFactor();
487
488	disp35.Fill(i,convphe/quaeff);
489	disp35.SetUsed(i);
490
491	disp37.Fill(i,convphe/quaeff*MCalibrationQEPix::gkDefaultAverageQE);
492	disp37.SetUsed(i);
493	}
494
495
496	if (IsRelTimes())
497	{
498	disp30.SetCamContent(fRelTimeCam, 0);
499	disp30.SetCamError( fRelTimeCam, 1);
500	disp31.SetCamContent(fRelTimeCam, 2);
501	disp31.SetCamError( fRelTimeCam, 3);
502	disp32.SetCamContent(fRelTimeCam, 4);
503	disp33.SetCamContent(fBadPixels, 20);
504	disp34.SetCamContent(fBadPixels, 21);
505
506	disp30.SetYTitle("Time Offset [FADC units]");
507	disp31.SetYTitle("Timing resolution [FADC units]");
508	disp32.SetYTitle("P_{Time} [1]");
509	disp33.SetYTitle("[1]");
510	disp34.SetYTitle("[1]");
511	}
512
513	if (fDisplayType == kDataCheckDisplay)
514	{
515
516	TCanvas &c1 = fDisplay->AddTab("FitCharge");
517	c1.Divide(3, 3);
518
519	//
520	// MEAN CHARGES
521	//
522
523	c1.cd(1);
524	gPad->SetBorderMode(0);
525	gPad->SetTicks();
526	MHCamera obj1=(MHCamera)disp1.DrawCopy("hist");
527	//
528	// for the datacheck, fix the ranges!!
529	//
530	// obj1->SetMinimum(fChargeMin);
531	// obj1->SetMaximum(fChargeMax);
532	//
533	// Set the datacheck sizes:
534	//
535	FixDataCheckHist((TH1D*)obj1);
536	obj1->SetStats(kFALSE);
537	//
538	// set reference lines
539	//
540	// DisplayReferenceLines(obj1,0);
541
542	c1.cd(4);
543	gPad->SetBorderMode(0);
544	obj1->SetPrettyPalette();
545	obj1->Draw();
546
547	c1.cd(7);
548	gPad->SetBorderMode(0);
549	gPad->SetTicks();
550	TH1D obj2 = (TH1D)obj1->Projection(obj1->GetName());
551	obj2->Draw();
552	obj2->SetBit(kCanDelete);
553	obj2->Fit("gaus","Q");
554	TF1 *fun2 = obj2->GetFunction("gaus");
555	fun2->SetLineColor(kYellow);
556	gPad->Modified();
557	gPad->Update();
558	TPaveStats st = (TPaveStats)obj2->GetListOfFunctions()->FindObject("stats");
559	st->SetY1NDC(0.55);
560	st->SetY2NDC(0.89);
561	st->SetX1NDC(0.65);
562	st->SetX2NDC(0.99);
563	gPad->Modified();
564	gPad->Update();
565	//
566	// Set the datacheck sizes:
567	//
568	FixDataCheckHist(obj2);
569	obj2->SetStats(1);
570
571	//
572	// Display the outliers as dead and noisy pixels
573	//
574	DisplayOutliers(obj2,"low-ampl.","high-ampl.");
575	TLatex flattex;
576	flattex.SetTextSize(0.07);
577	const Double_t minl = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
578	const Double_t maxl = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
579	flattex.DrawLatex(minl+0.015*(maxl-minl),obj2->GetBinContent(obj2->GetMaximumBin())/1.35,
580	Form("Flatfield precision: %4.2f%%",
581	fun2->GetParameter(2)/fun2->GetParameter(1)*100.));
582
583	//
584	// RMS per Charge
585	//
586
587	c1.cd(2);
588	gPad->SetBorderMode(0);
589	gPad->SetTicks();
590	MHCamera obj3=(MHCamera)disp36.DrawCopy("hist");
591	//
592	// for the datacheck, fix the ranges!!
593	//
594	// obj3->SetMinimum(0.);
595	// obj3->SetMaximum(fChargeMax);
596	//
597	// Set the datacheck sizes:
598	//
599	FixDataCheckHist((TH1D*)obj3);
600	obj3->SetStats(kFALSE);
601	//
602	// set reference lines
603	//
604	// DisplayReferenceLines(obj3,0);
605
606	c1.cd(5);
607	gPad->SetBorderMode(0);
608	obj3->SetPrettyPalette();
609	obj3->Draw();
610
611	c1.cd(8);
612	gPad->SetBorderMode(0);
613	if (geomcam.InheritsFrom("MGeomCamMagic"))
614	DisplayDoubleProject(&disp36, "dead", "noisy");
615
616	//
617	// PHOTO ELECTRONS
618	//
619
620	c1.cd(3);
621	gPad->SetBorderMode(0);
622	gPad->SetTicks();
623	MHCamera obj4=(MHCamera)disp5.DrawCopy("hist");
624	//
625	// for the datacheck, fix the ranges!!
626	//
627	// obj3->SetMinimum(fChargeMin);
628	// obj3->SetMaximum(fChargeMax);
629	//
630	// Set the datacheck sizes:
631	//
632	FixDataCheckHist((TH1D*)obj4);
633	obj4->SetStats(kFALSE);
634	//
635	// set reference lines
636	//
637	// DisplayReferenceLines(obj3,0);
638
639	c1.cd(6);
640	gPad->SetBorderMode(0);
641	obj4->SetPrettyPalette();
642	obj4->Draw();
643
644	c1.cd(9);
645	gPad->SetBorderMode(0);
646	if (geomcam.InheritsFrom("MGeomCamMagic"))
647	DisplayDoubleProject(&disp5, "dead", "noisy");
648
649	//
650	// CONVERSION FACTORS
651	//
652	TCanvas &c2 = fDisplay->AddTab("Conversion");
653	c2.Divide(3,3);
654
655	c2.cd(1);
656	gPad->SetBorderMode(0);
657	gPad->SetTicks();
658	MHCamera obj5=(MHCamera)disp6.DrawCopy("hist");
659	//
660	// for the datacheck, fix the ranges!!
661	//
662	obj5->SetMinimum(fConvFADC2PheMin);
663	obj5->SetMaximum(fConvFADC2PheMax);
664	//
665	// Set the datacheck sizes:
666	//
667	FixDataCheckHist((TH1D*)obj5);
668	obj5->SetStats(kFALSE);
669	//
670	// set reference lines
671	//
672	DisplayReferenceLines(obj5,2);
673
674	c2.cd(4);
675	gPad->SetBorderMode(0);
676	obj5->SetPrettyPalette();
677	obj5->Draw();
678
679	c2.cd(7);
680	gPad->SetBorderMode(0);
681	if (geomcam.InheritsFrom("MGeomCamMagic"))
682	DisplayDoubleProject(&disp6, "noisy", "dead");
683
684	//
685	// QUANTUM EFFICIENCY
686	//
687	c2.cd(2);
688	gPad->SetBorderMode(0);
689	gPad->SetTicks();
690	MHCamera obj6=(MHCamera)disp8.DrawCopy("hist");
691	//
692	// for the datacheck, fix the ranges!!
693	//
694	obj6->SetMinimum(fQEMin);
695	obj6->SetMaximum(fQEMax);
696	//
697	// Set the datacheck sizes:
698	//
699	FixDataCheckHist((TH1D*)obj6);
700	obj6->SetStats(kFALSE);
701	//
702	// set reference lines
703	//
704	DisplayReferenceLines(obj6,0);
705
706	c2.cd(5);
707	gPad->SetBorderMode(0);
708	obj6->SetPrettyPalette();
709	obj6->Draw();
710
711	c2.cd(8);
712	gPad->SetBorderMode(0);
713	if (geomcam.InheritsFrom("MGeomCamMagic"))
714	DisplayDoubleProject(&disp8, "noisy", "dead");
715
716	//
717	// CONVERSION FADC TO PHOTONS
718	//
719
720	c2.cd(3);
721	gPad->SetBorderMode(0);
722	gPad->SetTicks();
723	MHCamera obj7=(MHCamera)disp37.DrawCopy("hist");
724	//
725	// for the datacheck, fix the ranges!!
726	//
727	obj7->SetMinimum(fConvFADC2PheMin);
728	obj7->SetMaximum(fConvFADC2PheMax);
729	//
730	// Set the datacheck sizes:
731	//
732	FixDataCheckHist((TH1D*)obj7);
733	obj7->SetStats(kFALSE);
734	//
735	// set reference lines
736	//
737	DisplayReferenceLines(obj7,1);
738
739	c2.cd(6);
740	gPad->SetBorderMode(0);
741	obj7->SetPrettyPalette();
742	obj7->Draw();
743	c2.cd(9);
744	gPad->SetBorderMode(0);
745	if (geomcam.InheritsFrom("MGeomCamMagic"))
746	DisplayDoubleProject(&disp37, "noisy", "dead");
747
748	//
749	// ARRIVAL TIMES
750	//
751	TCanvas &c3 = fDisplay->AddTab("AbsTimes");
752	c3.Divide(2,3);
753
754	c3.cd(1);
755	gPad->SetBorderMode(0);
756	gPad->SetTicks();
757	MHCamera obj10=(MHCamera)disp28.DrawCopy("hist");
758	//
759	// for the datacheck, fix the ranges!!
760	//
761	obj10->SetMinimum(fArrivalTimeMin);
762	obj10->SetMaximum(fArrivalTimeMax);
763	//
764	// Set the datacheck sizes:
765	//
766	FixDataCheckHist((TH1D*)obj10);
767	obj10->SetStats(kFALSE);
768	//
769	// set reference lines
770	//
771	DisplayReferenceLines(obj10,3);
772
773	c3.cd(3);
774	gPad->SetBorderMode(0);
775	obj10->SetPrettyPalette();
776	obj10->Draw();
777
778	c3.cd(5);
779	gPad->SetBorderMode(0);
780	if (geomcam.InheritsFrom("MGeomCamMagic"))
781	DisplayDoubleProject(&disp28, "early", "late");
782
783	//
784	// ARRIVAL TIMES JITTER
785	//
786	c3.cd(2);
787	gPad->SetBorderMode(0);
788	gPad->SetTicks();
789	MHCamera obj11=(MHCamera)disp29.DrawCopy("hist");
790	//
791	// for the datacheck, fix the ranges!!
792	//
793	// obj11->SetMinimum(fArrivalTimeMin);
794	// obj11->SetMaximum(fArrivalTimeMax);
795	//
796	// Set the datacheck sizes:
797	//
798	FixDataCheckHist((TH1D*)obj11);
799	obj11->SetStats(kFALSE);
800	//
801	// set reference lines
802	//
803	DisplayReferenceLines(obj11,4);
804
805	c3.cd(4);
806	gPad->SetBorderMode(0);
807	obj11->SetPrettyPalette();
808	obj11->Draw();
809
810	c3.cd(6);
811	gPad->SetBorderMode(0);
812	if (geomcam.InheritsFrom("MGeomCamMagic"))
813	DisplayDoubleProject(&disp29, "", "jittering");
814
815	//
816	// UNSUITABLE PIXELS
817	//
818	TCanvas &c4 = fDisplay->AddTab("Defect");
819	c4.Divide(2,2, 0.005, 0.005);
820
821	c4.cd(1);
822	gPad->SetBorderMode(0);
823	gPad->SetTicks();
824
825	MHCamera obj8=(MHCamera)disp24.DrawCopy("hist");
826
827	gStyle->SetPalette(1);
828	const Int_t numcol = gStyle->GetNumberOfColors();
829
830	const Double_t min = 1;
831	const Double_t max = 10.;
832	const Double_t f = (numcol-1)/(max-min);
833
834	obj8->SetStats(kFALSE);
835	obj8->SetMinimum(min);
836	obj8->SetMaximum(max);
837
838	//
839	// Set the datacheck sizes:
840	//
841	FixDataCheckHist((TH1D*)obj8);
842
843	TPaveText *pave = new TPaveText(0.05,0.02,0.975,0.999);
844	pave->SetBit(kCanDelete);
845	pave->ConvertNDCtoPad();
846	pave->SetTextSize(0.045);
847	pave->AddText(" ");
848	DrawBadPixel(*pave, disp24, 1, f, "Signal smaller 4.5 Pedestal RMS: ");
849	DrawBadPixel(*pave, disp24, 2, f, "Low Gain Saturation: ");
850	// DrawBadPixel(*pave, disp24, 3, f, "Mean Arr. Time In First Extraction Bin: ");
851	// DrawBadPixel(*pave, disp24, 4, f, "Mean Arr. Time In Last 2 Extraction Bins: ");
852	DrawBadPixel(*pave, disp24, 3, f, "High-Gain Histogram Overflow: ");
853	DrawBadPixel(*pave, disp24, 4, f, "Low-Gain Histogram Overflow: ");
854	DrawBadPixel(*pave, disp24, 5, f, "Presumably dead from Ped. Rms: ");
855	DrawBadPixel(*pave, disp24, 6, f, "Deviating Number of Photo-electrons: ");
856	DrawBadPixel(*pave, disp24, 7, f, "Deviation from median abs.arr-time rms: ");
857	DrawBadPixel(*pave, disp24, 8, f, "Deviation from median rel.arr-time rms: ");
858	DrawBadPixel(*pave, disp24, 9, f, "Too many Low-Gain Blackout Events: ");
859	DrawBadPixel(*pave, disp24, 10, f, "Previously Excluded: ");
860	pave->Draw();
861
862	c4.cd(3);
863	gPad->SetBorderMode(0);
864	obj8->SetPrettyPalette();
865	obj8->Draw();
866
867	//
868	// UNRELIABLE PIXELS
869	//
870	c4.cd(2);
871	gPad->SetBorderMode(0);
872	gPad->SetTicks();
873	MHCamera obj9=(MHCamera)disp25.DrawCopy("hist");
874
875	const Double_t min2 = 1;
876	const Double_t max2 = 8;
877	const Double_t f2 = (numcol-1)/(max2-min2);
878	obj9->SetMinimum(min2);
879	obj9->SetMaximum(max2);
880	obj9->SetStats(kFALSE);
881
882	FixDataCheckHist((TH1D*)obj9);
883
884	gStyle->SetPalette(1);
885
886	TPaveText *pave2 = new TPaveText(0.025,0.02,0.95,0.999);
887	pave2->SetBit(kCanDelete);
888	pave2->ConvertNDCtoPad();
889	pave2->SetTextSize(0.05);
890	pave2->AddText(" ");
891	DrawBadPixel(*pave2, disp25, 1, f2, "Signal Sigma smaller Pedestal RMS: ");
892	DrawBadPixel(*pave2, disp25, 2, f2, "High Gain Signals could not be fitted: ");
893	DrawBadPixel(*pave2, disp25, 3, f2, "Low Gain Signals could not be fitted: ");
894	DrawBadPixel(*pave2, disp25, 4, f2, "Relative Arr. Times could not be fitted: ");
895	DrawBadPixel(*pave2, disp25, 5, f2, "High Gain Signals Oscillation: ");
896	DrawBadPixel(*pave2, disp25, 6, f2, "Low Gain Signals Oscillation: ");
897	DrawBadPixel(*pave2, disp25, 7, f2, "Relative Arr. Times Oscillation: ");
898	DrawBadPixel(*pave2, disp25, 8, f2, "Deviating global F-Factor: ");
899	pave2->Draw();
900
901	c4.cd(4);
902	gPad->SetBorderMode(0);
903	obj9->SetPrettyPalette();
904	obj9->Draw();
905
906	if (IsRelTimes())
907	{
908	TCanvas &c5 = fDisplay->AddTab("RelTimes");
909	c5.Divide(2,3);
910
911	//
912	// MEAN REL. ARR. TIMES
913	//
914	c5.cd(1);
915	gPad->SetBorderMode(0);
916	gPad->SetTicks();
917	MHCamera obj10=(MHCamera)disp30.DrawCopy("hist");
918	//
919	// for the datacheck, fix the ranges!!
920	//
921	obj10->SetMinimum(fTimeOffsetMin);
922	obj10->SetMaximum(fTimeOffsetMax);
923	//
924	// Set the datacheck sizes:
925	//
926	FixDataCheckHist((TH1D*)obj10);
927	obj10->SetStats(kFALSE);
928	//
929	// set reference lines
930	//
931	DisplayReferenceLines(obj10,5);
932
933	c5.cd(3);
934	gPad->SetBorderMode(0);
935	obj10->SetPrettyPalette();
936	obj10->Draw();
937
938	c5.cd(5);
939	gPad->SetBorderMode(0);
940	if (geomcam.InheritsFrom("MGeomCamMagic"))
941	DisplayDoubleProject(&disp30, "early", "late");
942
943	//
944	// JITTER Rel. Arr. Times
945	//
946	c5.cd(2);
947	gPad->SetBorderMode(0);
948	gPad->SetTicks();
949	MHCamera obj11=(MHCamera)disp31.DrawCopy("hist");
950	//
951	// for the datacheck, fix the ranges!!
952	//
953	obj11->SetMinimum(fTimeResolutionMin);
954	obj11->SetMaximum(fTimeResolutionMax);
955	//
956	// Set the datacheck sizes:
957	//
958	FixDataCheckHist((TH1D*)obj11);
959	obj11->SetStats(kFALSE);
960	//
961	// set reference lines
962	//
963	DisplayReferenceLines(obj11,6);
964
965	c5.cd(4);
966	gPad->SetBorderMode(0);
967	obj11->SetPrettyPalette();
968	obj11->Draw();
969
970	c5.cd(6);
971	gPad->SetBorderMode(0);
972	if (geomcam.InheritsFrom("MGeomCamMagic"))
973	DisplayDoubleProject(&disp31, "too stable", "jittering");
974
975	}
976	return;
977	}
978
979	if (fDisplayType == kNormalDisplay)
980	{
981
982	// Charges
983	TCanvas &c11 = fDisplay->AddTab("FitCharge");
984	c11.Divide(2, 4);
985
986	disp1.CamDraw(c11, 1, 2, 5, 1);
987	disp2.CamDraw(c11, 2, 2, 5, 1);
988
989	// Reduced Sigmas
990	TCanvas &c12 = fDisplay->AddTab("RedSigma");
991	c12.Divide(2,4);
992
993	disp3.CamDraw(c12, 1, 2, 5, 1);
994	disp4.CamDraw(c12, 2, 2, 5, 1);
995
996	// F-Factor
997	TCanvas &c13 = fDisplay->AddTab("Phe's");
998	c13.Divide(3,4);
999
1000	disp5.CamDraw(c13, 1, 3, 5, 1);
1001	disp6.CamDraw(c13, 2, 3, 5, 1);
1002	disp7.CamDraw(c13, 3, 3, 5, 1);
1003
1004	// QE's
1005	TCanvas &c14 = fDisplay->AddTab("QE's");
1006	c14.Divide(4,4);
1007
1008	disp8.CamDraw(c14, 1, 4, 5, 1);
1009	disp9.CamDraw(c14, 2, 4, 5, 1);
1010	disp10.CamDraw(c14, 3, 4, 5, 1);
1011	disp11.CamDraw(c14, 4, 4, 5, 1);
1012
1013	// Defects
1014	TCanvas &c15 = fDisplay->AddTab("Defect");
1015	// c15.Divide(5,2);
1016	c15.Divide(4,2);
1017
1018	/*
1019	disp23.CamDraw(c15, 1, 5, 0);
1020	disp24.CamDraw(c15, 2, 5, 0);
1021	disp25.CamDraw(c15, 3, 5, 0);
1022	disp26.CamDraw(c15, 4, 5, 0);
1023	disp27.CamDraw(c15, 5, 5, 0);
1024	*/
1025	disp24.CamDraw(c15, 1, 4, 0);
1026	disp25.CamDraw(c15, 2, 4, 0);
1027	disp26.CamDraw(c15, 3, 4, 0);
1028	disp27.CamDraw(c15, 4, 4, 0);
1029
1030	// Abs. Times
1031	TCanvas &c16 = fDisplay->AddTab("AbsTimes");
1032	c16.Divide(2,3);
1033
1034	disp28.CamDraw(c16, 1, 2, 5);
1035	disp29.CamDraw(c16, 2, 2, 5);
1036
1037	if (IsRelTimes())
1038	{
1039	// Rel. Times
1040	TCanvas &c17 = fDisplay->AddTab("RelTimes");
1041	c17.Divide(2,4);
1042
1043	disp30.CamDraw(c17, 1, 2, 5, 1);
1044	disp31.CamDraw(c17, 2, 2, 5, 1);
1045	}
1046
1047	return;
1048	}
1049
1050	if (fDisplayType == kFullDisplay)
1051	{
1052	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationChargeCam");
1053
1054	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1055	{
1056	cam->GetAverageHiGainSector(sector).DrawClone("all");
1057	cam->GetAverageLoGainSector(sector).DrawClone("all");
1058	}
1059
1060	// Charges
1061	TCanvas &c21 = fDisplay->AddTab("FitCharge");
1062	c21.Divide(2, 4);
1063
1064	disp1.CamDraw(c21, 1, 2, 2, 1);
1065	disp2.CamDraw(c21, 2, 2, 2, 1);
1066
1067	// Reduced Sigmas
1068	TCanvas &c23 = fDisplay->AddTab("RedSigma");
1069	c23.Divide(2,4);
1070
1071	disp3.CamDraw(c23, 1, 2, 2, 1);
1072	disp4.CamDraw(c23, 2, 2, 2, 1);
1073
1074	// F-Factor
1075	TCanvas &c24 = fDisplay->AddTab("Phe's");
1076	c24.Divide(3,5);
1077
1078	disp5.CamDraw(c24, 1, 3, 2, 1, 1);
1079	disp6.CamDraw(c24, 2, 3, 2, 1, 1);
1080	disp7.CamDraw(c24, 3, 3, 2, 1, 1);
1081
1082	// QE's
1083	TCanvas &c25 = fDisplay->AddTab("QE's");
1084	c25.Divide(4,5);
1085
1086	disp8.CamDraw(c25, 1, 4, 2, 1, 1);
1087	disp9.CamDraw(c25, 2, 4, 2, 1, 1);
1088	disp10.CamDraw(c25, 3, 4, 2, 1, 1);
1089	disp11.CamDraw(c25, 4, 4, 2, 1, 1);
1090
1091	// Validity
1092	TCanvas &c26 = fDisplay->AddTab("Valid");
1093	c26.Divide(4,2);
1094
1095	disp12.CamDraw(c26, 1, 4, 0);
1096	disp13.CamDraw(c26, 2, 4, 0);
1097	disp14.CamDraw(c26, 3, 4, 0);
1098	disp15.CamDraw(c26, 4, 4, 0);
1099
1100	// Other info
1101	TCanvas &c27 = fDisplay->AddTab("HiLoGain");
1102	c27.Divide(3,3);
1103
1104	disp16.CamDraw(c27, 1, 3, 0);
1105	disp17.CamDraw(c27, 2, 3, 1);
1106	disp18.CamDraw(c27, 3, 3, 1);
1107
1108	// Pickup
1109	TCanvas &c28 = fDisplay->AddTab("Pickup");
1110	c28.Divide(4,2);
1111
1112	disp19.CamDraw(c28, 1, 4, 0);
1113	disp20.CamDraw(c28, 2, 4, 0);
1114	disp21.CamDraw(c28, 3, 4, 0);
1115	disp22.CamDraw(c28, 4, 4, 0);
1116
1117	// Defects
1118	TCanvas &c29 = fDisplay->AddTab("Defect");
1119	// c29.Divide(5,2);
1120	c29.Divide(4,2);
1121
1122	disp24.CamDraw(c29, 1, 4, 0);
1123	disp25.CamDraw(c29, 2, 4, 0);
1124	disp26.CamDraw(c29, 3, 4, 0);
1125	disp27.CamDraw(c29, 4, 4, 0);
1126
1127	// Abs. Times
1128	TCanvas &c30 = fDisplay->AddTab("AbsTimes");
1129	c30.Divide(2,3);
1130
1131	disp28.CamDraw(c30, 1, 2, 2);
1132	disp29.CamDraw(c30, 2, 2, 1);
1133
1134	if (IsRelTimes())
1135	{
1136	// Rel. Times
1137	TCanvas &c31 = fDisplay->AddTab("RelTimes");
1138	c31.Divide(3,5);
1139
1140	disp30.CamDraw(c31, 1, 3, 2, 1, 1);
1141	disp31.CamDraw(c31, 2, 3, 2, 1, 1);
1142	disp32.CamDraw(c31, 3, 3, 4, 1, 1);
1143
1144	// Time Defects
1145	TCanvas &c32 = fDisplay->AddTab("DefTime");
1146	c32.Divide(2,2);
1147
1148	disp33.CamDraw(c32, 1, 2, 0);
1149	disp34.CamDraw(c32, 2, 2, 0);
1150
1151	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationRelTimeCam");
1152
1153	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1154	{
1155	cam->GetAverageHiGainSector(sector).DrawClone("fourierevents");
1156	cam->GetAverageLoGainSector(sector).DrawClone("fourierevents");
1157	}
1158
1159	}
1160
1161	return;
1162	}
1163	}
1164
1165
1166	void MJCalibration::DisplayReferenceLines(MHCamera *cam, const Int_t what) const
1167	{
1168
1169	const MGeomCam *geom = cam->GetGeometry();
1170
1171	Double_t x = geom->InheritsFrom("MGeomCamMagic") ? 397 : cam->GetNbinsX() ;
1172
1173	TLine line;
1174	line.SetLineStyle(kDashed);
1175	line.SetLineWidth(3);
1176	line.SetLineColor(kBlue);
1177
1178	TLine *l1 = NULL;
1179
1180	switch (what)
1181	{
1182	case 0:
1183	l1 = line.DrawLine(0, fRefQEInner, x, fRefQEInner);
1184	break;
1185	case 1:
1186	l1 = line.DrawLine(0, fRefConvFADC2PheInner, x, fRefConvFADC2PheInner);
1187	break;
1188	case 2:
1189	l1 = line.DrawLine(0, fRefFADC2PheInner, x, fRefFADC2PheInner );
1190	break;
1191	case 3:
1192	l1 = line.DrawLine(0, fRefArrivalTimeInner, x, fRefArrivalTimeInner );
1193	break;
1194	case 4:
1195	l1 = line.DrawLine(0, fRefArrivalTimeRmsInner, x, fRefArrivalTimeRmsInner );
1196	break;
1197	case 5:
1198	l1 = line.DrawLine(0, 0, x, 0);
1199	break;
1200	case 6:
1201	l1 = line.DrawLine(0, fRefTimeResolutionInner, x, fRefTimeResolutionInner );
1202	break;
1203	default:
1204	break;
1205	}
1206
1207	if (geom->InheritsFrom("MGeomCamMagic"))
1208	{
1209	const Double_t x2 = cam->GetNbinsX();
1210
1211	switch (what)
1212	{
1213	case 0:
1214	line.DrawLine(x2, fRefQEOuter, 398, fRefQEOuter);
1215	break;
1216	case 1:
1217	line.DrawLine(x2, fRefConvFADC2PheOuter, 398, fRefConvFADC2PheOuter );
1218	break;
1219	case 2:
1220	line.DrawLine(x2, fRefFADC2PheOuter, 398, fRefFADC2PheOuter);
1221	break;
1222	case 3:
1223	line.DrawLine(x2, fRefArrivalTimeOuter, 398, fRefArrivalTimeOuter);
1224	break;
1225	case 4:
1226	line.DrawLine(x2, fRefArrivalTimeRmsOuter, 398, fRefArrivalTimeRmsOuter);
1227	break;
1228	case 5:
1229	line.DrawLine(x2, fRefTimeOffsetOuter, 398, fRefTimeOffsetOuter);
1230	break;
1231	case 6:
1232	line.DrawLine(x2, fRefTimeResolutionOuter, 398, fRefTimeResolutionOuter);
1233	break;
1234	default:
1235	break;
1236	}
1237	}
1238
1239	TLegend *leg = new TLegend(0.6,0.85,0.9 ,0.95);
1240	leg->SetBit(kCanDelete);
1241	leg->AddEntry(l1, "Reference","l");
1242	leg->Draw();
1243	}
1244
1245	void MJCalibration::DisplayOutliers(TH1D hist, const char whatsmall, const char* whatbig) const
1246	{
1247
1248	const Int_t kNotDraw = 1<<9;
1249	TF1 *f = hist->GetFunction("gaus");
1250	f->ResetBit(kNotDraw);
1251
1252	const Float_t mean = f->GetParameter(1);
1253	const Float_t lolim = mean - 4.0*f->GetParameter(2);
1254	const Float_t uplim = mean + 4.0*f->GetParameter(2);
1255	const Stat_t dead = hist->Integral(0,hist->FindBin(lolim)-1);
1256	const Stat_t noisy = hist->Integral(hist->FindBin(uplim)+1,hist->GetNbinsX()+1);
1257
1258	const Double_t max = hist->GetBinContent(hist->GetMaximumBin());
1259
1260	const Double_t minl = hist->GetBinCenter(hist->GetXaxis()->GetFirst());
1261	const Double_t maxl = hist->GetBinCenter(hist->GetXaxis()->GetLast());
1262
1263	TLatex deadtex;
1264	deadtex.SetTextSize(0.07);
1265	deadtex.DrawLatex(minl+0.015*(maxl-minl),max/1.1,
1266	Form("%3i %s pixels",(Int_t)dead,whatsmall));
1267
1268	TLatex noisytex;
1269	noisytex.SetTextSize(0.07);
1270	noisytex.DrawLatex(minl+0.015*(maxl-minl),max/1.2,
1271	Form("%3i %s pixels",(Int_t)noisy,whatbig));
1272
1273	}
1274
1275	void MJCalibration::FixDataCheckHist(TH1D *hist) const
1276	{
1277
1278	hist->SetDirectory(NULL);
1279
1280	//
1281	// set the labels bigger
1282	//
1283	TAxis *xaxe = hist->GetXaxis();
1284	TAxis *yaxe = hist->GetYaxis();
1285
1286	xaxe->CenterTitle();
1287	yaxe->CenterTitle();
1288	xaxe->SetTitleSize(0.06);
1289	yaxe->SetTitleSize(0.06);
1290	xaxe->SetTitleOffset(0.8);
1291	yaxe->SetTitleOffset(0.85);
1292	xaxe->SetLabelSize(0.05);
1293	yaxe->SetLabelSize(0.05);
1294
1295	}
1296
1297	// --------------------------------------------------------------------------
1298	//
1299	// Retrieve the output file written by WriteResult()
1300	//
1301	const char* MJCalibration::GetOutputFileName() const
1302	{
1303	return Form("calib%08d.root", fSequence.GetSequence());
1304	}
1305
1306	// --------------------------------------------------------------------------
1307	//
1308	// Read the following values from resource file:
1309	//
1310	// ConvFADC2PheMin
1311	// ConvFADC2PheMax
1312	// ConvFADC2PhotMin
1313	// ConvFADC2PhotMax
1314	//
1315	// QEMin
1316	// QEMax
1317	//
1318	// ArrivalTimeMin
1319	// ArrivalTimeMax
1320	//
1321	// TimeOffsetMin
1322	// TimeOffsetMax
1323	// TimeResolutionMin
1324	// TimeResolutionMax
1325	//
1326	// RefConvFADC2PheInner
1327	// RefConvFADC2PheOuter
1328	// RefConvFADC2PhotInner
1329	// RefConvFADC2PhotOuter
1330	//
1331	// RefQEInner
1332	// RefQEOuter
1333	//
1334	// RefArrivalTimeInner
1335	// RefArrivalTimeOuter
1336	// RefArrivalTimeRmsInner
1337	// RefArrivalTimeRmsOuter
1338	//
1339	// RefTimeOffsetOuter
1340	// RefTimeResolutionInner
1341	// RefTimeResolutionOuter
1342	//
1343	void MJCalibration::ReadReferenceFile()
1344	{
1345	TEnv refenv(fReferenceFile);
1346
1347	fConvFADC2PheMin = refenv.GetValue("ConvFADC2PheMin",fConvFADC2PheMin);
1348	fConvFADC2PheMax = refenv.GetValue("ConvFADC2PheMax",fConvFADC2PheMax);
1349	fConvFADC2PhotMin = refenv.GetValue("ConvFADC2PhotMin",fConvFADC2PhotMin);
1350	fConvFADC2PhotMax = refenv.GetValue("ConvFADC2PhotMax",fConvFADC2PhotMax);
1351	fQEMin = refenv.GetValue("QEMin",fQEMin);
1352	fQEMax = refenv.GetValue("QEMax",fQEMax);
1353	fArrivalTimeMin = refenv.GetValue("ArrivalTimeMin",fArrivalTimeMin);
1354	fArrivalTimeMax = refenv.GetValue("ArrivalTimeMax",fArrivalTimeMax);
1355	fTimeOffsetMin = refenv.GetValue("TimeOffsetMin",fTimeOffsetMin);
1356	fTimeOffsetMax = refenv.GetValue("TimeOffsetMax",fTimeOffsetMax);
1357	fTimeResolutionMin = refenv.GetValue("TimeResolutionMin",fTimeResolutionMin);
1358	fTimeResolutionMax = refenv.GetValue("TimeResolutionMax",fTimeResolutionMax);
1359
1360	fRefFADC2PheInner = refenv.GetValue("RefFADC2PheInner",fRefFADC2PheInner);
1361	fRefFADC2PheOuter = refenv.GetValue("RefFADC2PheOuter",fRefFADC2PheOuter);
1362	fRefConvFADC2PhotInner = refenv.GetValue("RefConvFADC2PhotInner",fRefConvFADC2PhotInner);
1363	fRefConvFADC2PhotOuter = refenv.GetValue("RefConvFADC2PhotOuter",fRefConvFADC2PhotOuter);
1364	fRefConvFADC2PheInner = refenv.GetValue("RefConvFADC2PheInner",fRefConvFADC2PheInner);
1365	fRefConvFADC2PheOuter = refenv.GetValue("RefConvFADC2PheOuter",fRefConvFADC2PheOuter);
1366	fRefQEInner = refenv.GetValue("RefQEInner",fRefQEInner);
1367	fRefQEOuter = refenv.GetValue("RefQEOuter",fRefQEOuter);
1368	fRefArrivalTimeInner = refenv.GetValue("RefArrivalTimeInner",fRefArrivalTimeInner);
1369	fRefArrivalTimeOuter = refenv.GetValue("RefArrivalTimeOuter",fRefArrivalTimeOuter);
1370	fRefArrivalTimeRmsInner = refenv.GetValue("RefArrivalTimeRmsInner",fRefArrivalTimeRmsInner);
1371	fRefArrivalTimeRmsOuter = refenv.GetValue("RefArrivalTimeRmsOuter",fRefArrivalTimeRmsOuter);
1372	fRefTimeOffsetOuter = refenv.GetValue("RefTimeOffsetOuter",fRefTimeOffsetOuter);
1373	fRefTimeResolutionInner = refenv.GetValue("RefTimeResolutionInner",fRefTimeResolutionInner);
1374	fRefTimeResolutionOuter = refenv.GetValue("RefTimeResolutionOuter",fRefTimeResolutionOuter);
1375	}
1376
1377	// --------------------------------------------------------------------------
1378	//
1379	// Read the following values from resource file.
1380	//
1381	Bool_t MJCalibration::ReadHiLoCalibFile()
1382	{
1383	if (fExtractor && !fExtractor->HasLoGain())
1384	return kTRUE;
1385
1386	// if (!fIsHiLoCalibration)
1387	// return kTRUE;
1388
1389	// We use the night time stamp to determine the period
1390	// because the night must be in the sequence file
1391	const MTime &night = fSequence.GetNight();
1392	const Int_t period = night.GetMagicPeriod();
1393
1394	// Open resource file
1395	MEnv env(fHiLoCalibFile);
1396	if (!env.IsValid())
1397	{
1398	*fLog << err << "ERROR - Resource file " << fHiLoCalibFile;
1399	*fLog << " could not be opened... abort." << endl;
1400	return kFALSE;
1401	}
1402
1403	// Defined resource id
1404	const TString id = fSequence.IsMonteCarlo() ? "MC" : Form("%02d", period);
1405
1406	// Check for a valid entry for the correct period
1407	TString fname = env.GetValue(id, "");
1408	if (fname.IsNull())
1409	{
1410	*fLog << err << "ERROR - No entry for resource id '" << id;
1411	*fLog << "' found in " << fHiLoCalibFile << "... looking for default." << endl;
1412	return kFALSE;
1413	/*
1414	*fLog << warn << "WARNING - No entry for period " << period;
1415	*fLog << " found in " << fHiLoCalibFile << "... looking for default." << endl;
1416
1417	fname = env.GetValue("00", "");
1418	if (fname.IsNull())
1419	{
1420	*fLog << err << "ERROR - No default entry (00) found in ";
1421	*fLog << fHiLoCalibFile << "... abort." << endl;
1422	return kFALSE;
1423	}*/
1424	}
1425
1426	*fLog << inf << "Reading Hi-/Lo-Gain calibration constants from " << fname << endl;
1427
1428	// Open file with calibration constants
1429	TFile file(fname, "READ");
1430	if (!file.IsOpen())
1431	{
1432	*fLog << err << "ERROR - Couldn't open file " << fname << " for reading... abort." << endl;
1433	return kFALSE;
1434	}
1435
1436	// read calibration constants
1437	MHCamEvent hilocam;
1438	if (hilocam.Read()<=0)
1439	{
1440	*fLog << err << "ERROR - Unable to read MHCamEvent from " << fname << "... abort." << endl;
1441	return kFALSE;
1442	}
1443
1444	// Get histogram with constants
1445	MHCamera *hist = hilocam.GetHist();
1446	if (!hist)
1447	{
1448	*fLog << err << "ERROR - MHCamEvent from " << fname << " empty... abort." << endl;
1449	return kFALSE;
1450	}
1451
1452	// Do some sanity stuff
1453	if (fCalibrationCam.GetSize() < 1)
1454	fCalibrationCam.InitSize(hist->GetNumPixels());
1455
1456	if (fBadPixels.GetSize() < 1)
1457	fBadPixels.InitSize(hist->GetNumPixels());
1458
1459	if ((UInt_t)fCalibrationCam.GetSize() != hist->GetNumPixels())
1460	{
1461	*fLog << err << "ERROR - Size mismatch MHCamEvent and MCalibrationChargeCam.. abort." << endl;
1462	return kFALSE;
1463	}
1464
1465	// Copy the constants to their final location
1466	// FIXME: For what the hell do we need to have the constants in
1467	// in MCalibrationChargeCam?
1468	for (UInt_t i=0; i<hist->GetNumPixels(); i++)
1469	{
1470	hist->SetBit(MHCamera::kProfile);
1471	Double_t v = hist->GetBinContent(i);
1472	hist->SetBit(MHCamera::kErrorMean);
1473	Double_t e = hist->GetBinError(i);
1474	hist->ResetBit(MHCamera::kErrorMean);
1475	Double_t s = hist->GetBinError(i);
1476
1477	if (!hist->IsUsed(i))
1478	{
1479	fBadPixels[i].SetUncalibrated(MBadPixelsPix::kConversionHiLoNotValid);
1480	v = e = s = -1;
1481	}
1482
1483	MCalibrationChargePix &cpix = (MCalibrationChargePix&)fCalibrationCam[i];
1484	cpix.SetConversionHiLo(v);
1485	cpix.SetConversionHiLoErr(e);
1486	cpix.SetConversionHiLoSigma(s);
1487	}
1488
1489	return kTRUE;
1490	}
1491
1492	// --------------------------------------------------------------------------
1493	//
1494	// MJCalibration allows to setup several option by a resource file:
1495	// MJCalibration.Display: full, datacheck, normal
1496	// MJCalibration.RelTimeCalibration: yes,no
1497	// MJCalibration.DataCheck: yes,no
1498	// MJCalibration.Debug: yes,no
1499	// MJCalibration.UseBlindPixel: yes,no
1500	// MJCalibration.UsePINDiode: yes,no
1501	// MJCalibration.Geometry: MGeomCamMagic, MGeomCamECO1000
1502	//
1503	// Name of a file containing reference values (see ReadReferenceFile)
1504	// Prefix.ReferenceFile: filename
1505	// (see ReadReferenceFile)
1506	//
1507	// For more details see the class description and the corresponding Getters
1508	//
1509	Bool_t MJCalibration::CheckEnvLocal()
1510	{
1511	TString dis = GetEnv("Display", "");
1512	if (dis.BeginsWith("Full", TString::kIgnoreCase))
1513	SetFullDisplay();
1514	if (dis.BeginsWith("DataCheck", TString::kIgnoreCase))
1515	SetDataCheckDisplay();
1516	if (dis.BeginsWith("Normal", TString::kIgnoreCase))
1517	SetNormalDisplay();
1518
1519	if (!MJCalib::CheckEnvLocal())
1520	return kFALSE;
1521
1522	SetRelTimeCalibration(GetEnv("RelTimeCalibration", IsRelTimes()));
1523	SetDebug(GetEnv("Debug", IsDebug()));
1524
1525	SetUseBlindPixel(GetEnv("UseBlindPixel", IsUseBlindPixel()));
1526	SetUsePINDiode(GetEnv("UsePINDiode", IsUsePINDiode()));
1527	SetGeometry(GetEnv("Geometry", fGeometry));
1528
1529	fReferenceFile = GetEnv("ReferenceFile",fReferenceFile.Data());
1530	ReadReferenceFile();
1531
1532	fHiLoCalibFile = GetEnv("HiLoCalibFile",fHiLoCalibFile.Data());
1533
1534	/*
1535	if (IsUseMC() && !fHiLoCalibFile.EndsWith("_mc.root"))
1536	{
1537	if (!fHiLoCalibFile.EndsWith(".root"))
1538	{
1539	*fLog << warn << "WARNING - Hi-/Lo-Gain intercalibration file ";
1540	*fLog << fHiLoCalibFile << " has not .root as extension..." << endl;
1541	}
1542	else
1543	fHiLoCalibFile.Insert(fHiLoCalibFile.Length()-5, "_mc");
1544	}
1545	*/
1546
1547	return ReadHiLoCalibFile();
1548	}
1549
1550	void MJCalibration::InitBlindPixel(MExtractBlindPixel &blindext,
1551	MHCalibrationChargeBlindCam &blindcam)
1552	{
1553	const Int_t run = fSequence.GetLastRun();
1554
1555	//
1556	// Initialize the blind pixel. Unfortunately, there is a hardware
1557	// difference in the first blind pixel until run
1558	// gkSecondBlindPixelInstallation and the later setup. The first
1559	// needs to use a filter because of the length of spurious NSB photon
1560	// signals. The latter get better along extracting the amplitude
1561	// from a small window.
1562	//
1563	const MCalibrationBlindCamOneOldStyle one;
1564	const MCalibrationBlindCamTwoNewStyle two;
1565	const MCalibrationBlindCamThreeNewStyle three;
1566
1567	const MCalibrationBlindCam &blindresults =
1568	run<gkSecondBlindPixelInstallation ? static_cast<MCalibrationBlindCam>(one) :
1569	(run<gkThirdBlindPixelInstallation ? static_cast<MCalibrationBlindCam>(two) : static_cast<MCalibrationBlindCam>(three));
1570
1571	blindresults.Copy(fCalibrationBlindCam);
1572
1573	blindext.SetExtractionType(MExtractBlindPixel::kIntegral);
1574	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1575
1576	if (run<gkSecondBlindPixelInstallation)
1577	{
1578	blindext.SetRange(10,19,0,6);
1579	blindext.SetNSBFilterLimit(70);
1580	}
1581	else
1582	{
1583	blindext.SetRange(5,8,0,2);
1584	blindext.SetNSBFilterLimit(38);
1585	}
1586
1587	if (run>=gkThirdBlindPixelInstallation)
1588	blindext.SetDataType(MExtractBlindPixel::kRawEvt2);
1589	}
1590
1591	// --------------------------------------------------------------------------
1592	//
1593	// Execute the task list and the eventloop:
1594	//
1595	// - Check the colour of the files in fRuns (FindColor()), otherwise return
1596	// - Check for consistency between run numbers and number of files
1597	// - Add fRuns to MReadMarsFile
1598	// - Put into MParList:
1599	// 1) MPedestalCam (pedcam)
1600	// 2) MCalibrationQECam (fQECam)
1601	// 3) MCalibrationChargeCam (fCalibrationCam)
1602	// 4) MCalibrationRelTimeCam (fRelTimeCam) (only if flag IsRelTimes() is chosen)
1603	// 5) MBadPixelsCam (fBadPixels)
1604	// 6) MCalibrationChargePINDiode
1605	// 7) MCalibrationBlindPix
1606	// - Put into the MTaskList:
1607	// 1) MReadMarsFile
1608	// 2) MBadPixelsMerge
1609	// 3) MGeomApply
1610	// 4) MExtractor
1611	// 5) MExtractPINDiode
1612	// 6) MExtractBlindPixel
1613	// 7) MExtractTime (only if flag IsRelTimes() is chosen)
1614	// 8) MContinue(MFCosmics)
1615	// 9) MFillH("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode")
1616	// 10) MFillH("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam")
1617	// 11) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam")
1618	// 12) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillRelTime")
1619	// 13) MCalibrationChargeCalc
1620	// 14) MFillH("MHCalibrationRelTimeCam", "MArrivalTimeCam") (only if flag IsRelTimes() is chosen)
1621	// 15) MCalibrationRelTimeCalc
1622	// - Execute MEvtLoop
1623	// - DisplayResult()
1624	// - WriteResult()
1625	//
1626	Bool_t MJCalibration::Process(MPedestalCam &pedcam)
1627	{
1628	if (!fSequence.IsValid())
1629	{
1630	*fLog << err << "ERROR - Sequence invalid..." << endl;
1631	return kFALSE;
1632	}
1633
1634	*fLog << inf;
1635	fLog->Separator(GetDescriptor());
1636	*fLog << "Calculate calibration constants from Sequence #";
1637	*fLog << fSequence.GetSequence() << endl << endl;
1638
1639	// --------------------------------------------------------------------------------
1640
1641	if (!CheckEnv())
1642	return kFALSE;
1643
1644	// --------------------------------------------------------------------------------
1645
1646	// Setup Tasklist
1647	MParList plist;
1648	MTaskList tlist;
1649	plist.AddToList(&tlist);
1650	plist.AddToList(this); // take care of fDisplay!
1651
1652	MDirIter iter;
1653	if (fSequence.SetupCalRuns(iter, 0, !fSequence.IsMonteCarlo())<=0)
1654	return kFALSE;
1655
1656	//
1657	// Input containers
1658	//
1659	pedcam.SetName("MPedestalCam"); // MPedestalFundamental
1660	plist.AddToList(&pedcam);
1661	plist.AddToList(&fBadPixels);
1662
1663	//
1664	// Calibration Results containers
1665	//
1666	plist.AddToList(&fQECam);
1667	plist.AddToList(&fCalibrationCam);
1668	plist.AddToList(&fRelTimeCam);
1669	if (IsUseBlindPixel())
1670	plist.AddToList(&fCalibrationBlindCam);
1671	if (IsUsePINDiode())
1672	plist.AddToList(&fCalibrationPINDiode);
1673
1674	//
1675	// Initialize two histogram containers which could be modified in this class
1676	//
1677	MHCalibrationRelTimeCam reltimecam;
1678	MHCalibrationChargeCam chargecam;
1679	MHCalibrationChargeBlindCam blindcam;
1680	plist.AddToList(&chargecam);
1681
1682	if (IsUseBlindPixel())
1683	plist.AddToList(&blindcam);
1684	if (IsRelTimes())
1685	plist.AddToList(&reltimecam);
1686	//
1687	// Data Reading tasks
1688	//
1689	MReadMarsFile read("Events");
1690	MRawFileRead rawread(NULL);
1691
1692	if (!fSequence.IsMonteCarlo())
1693	{
1694	rawread.AddFiles(iter);
1695	tlist.AddToList(&rawread);
1696	}
1697	else
1698	{
1699	read.DisableAutoScheme();
1700	read.AddFiles(iter);
1701	tlist.AddToList(&read);
1702	}
1703
1704	//
1705	// Other Tasks
1706	//
1707
1708	// Set the default for data version earlier than 5, where no valid
1709	// trigger pattern exists. There should not be pin diode or other
1710	// types of events inside the calibration files which should be skipped,
1711	// anyway. So we set the default such that the MContinue ccalib
1712	// will never be executed.
1713	MTriggerPatternDecode trgpat;
1714	MFTriggerPattern fcalib("CalibFilter");
1715	fcalib.SetDefault(kFALSE);
1716	fcalib.DenyCalibration(MFTriggerPattern::kPrescaled);
1717
1718	MContinue ccalib(&fcalib,"ContTrigPattern");
1719
1720	MCalibrationPatternDecode decode;
1721	MGeomApply apply;
1722	apply.SetGeometry(fGeometry);
1723
1724	MBadPixelsMerge merge(&fBadPixels);
1725	MExtractPINDiode pinext;
1726	MExtractBlindPixel blindext;
1727
1728	if (IsUseBlindPixel())
1729	InitBlindPixel(blindext, blindcam);
1730
1731	// MExtractSlidingWindow extract2;
1732	// MExtractTimeHighestIntegral timehigh;
1733	MCalibrationChargeCalc calcalc;
1734	MCalibrationRelTimeCalc timecalc;
1735	calcalc.SetExtractor(fExtractor);
1736
1737	if (IsDebug())
1738	{
1739	chargecam.SetDebug();
1740	calcalc.SetDebug();
1741	}
1742
1743	//
1744	// Calibration histogramming
1745	//
1746	MFillH fillpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
1747	MFillH fillbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
1748	MFillH fillcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
1749	MFillH filltme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
1750	fillpin.SetBit(MFillH::kDoNotDisplay);
1751	fillbnd.SetBit(MFillH::kDoNotDisplay);
1752	fillcam.SetBit(MFillH::kDoNotDisplay);
1753	filltme.SetBit(MFillH::kDoNotDisplay);
1754
1755	//
1756	// Set default extractors in case, none has been set...
1757	//
1758	/*
1759	if (!fExtractor)
1760	fExtractor = &extract2;
1761	if (!fTimeExtractor)
1762	fTimeExtractor = &timehigh;
1763	*/
1764	MExtractTimeAndChargeSpline spline;
1765	if (!fExtractor)
1766	fExtractor = &spline;
1767	// if (!fTimeExtractor)
1768	// fTimeExtractor = &timehigh;
1769
1770	const Bool_t istimecharge = fExtractor->InheritsFrom("MExtractTimeAndCharge");
1771
1772	//
1773	// Look if the extractor is a pure charge or also a time extractor
1774	//
1775	if (istimecharge)
1776	{
1777	if (fExtractorCam.GetSize() == pedcam.GetSize())
1778	calcalc.SetPedestals(&fExtractorCam);
1779	else
1780	{
1781	*fLog << err << GetDescriptor() << "ERROR - ";
1782	*fLog << "Used Extractor derives from MExtractTimeAndCharge, " << endl;
1783	*fLog << "but MExtractorCam size " << fExtractorCam.GetSize() << " ";
1784	*fLog << "mismatch pedcam size " << pedcam.GetSize() << "! " << endl;
1785	return kFALSE;
1786	}
1787	}
1788
1789	//
1790	// Setup more tasks and tasklist
1791	//
1792	MTaskEnv taskenv("ExtractSignal");
1793	taskenv.SetDefault(fExtractor);
1794
1795	tlist.AddToList(&trgpat);
1796	if (fColor != MCalibrationCam::kCT1)
1797	tlist.AddToList(&ccalib);
1798	tlist.AddToList(&decode);
1799	tlist.AddToList(&merge);
1800	tlist.AddToList(&apply);
1801
1802	// Produce pedestal subtracted raw-data
1803	MPedestalSubtract pedsub;
1804	pedsub.SetPedestalCam(&pedcam);
1805	tlist.AddToList(&pedsub);
1806
1807	MCalibColorSet colorset;
1808	if (fColor != MCalibrationCam::kNONE)
1809	colorset.SetExplicitColor(fColor);
1810	tlist.AddToList(&colorset);
1811
1812	tlist.AddToList(&taskenv);
1813
1814	if (IsUsePINDiode())
1815	tlist.AddToList(&pinext);
1816	if (IsUseBlindPixel())
1817	tlist.AddToList(&blindext);
1818
1819	MTaskEnv taskenv2("ExtractTime");
1820	if (!istimecharge)
1821	{
1822	taskenv2.SetDefault(fTimeExtractor);
1823
1824	if (IsRelTimes())
1825	tlist.AddToList(&taskenv2);
1826	}
1827
1828	//
1829	// Apply a filter against cosmics
1830	// (will have to be needed in the future
1831	// when the calibration hardware-trigger is working)
1832	//
1833	MFCosmics cosmics;
1834	cosmics.SetMaxEmptyPixels(0.05);
1835	cosmics.SetMaxAcceptedFraction(0.5); // max=0.5 cosmics
1836
1837	MContinue cont(&cosmics, "ContCosmics");
1838	tlist.AddToList(&cont);
1839
1840	tlist.AddToList(&fillcam);
1841
1842	if (IsUseBlindPixel())
1843	tlist.AddToList(&fillbnd);
1844	if (IsUsePINDiode())
1845	tlist.AddToList(&fillpin);
1846
1847	tlist.AddToList(&calcalc);
1848
1849	if (IsRelTimes())
1850	{
1851	tlist.AddToList(&filltme);
1852	tlist.AddToList(&timecalc);
1853	}
1854
1855	MHCamEvent evt2(0, "Extra'd", "Extracted Calibration Signal;;S [cnts/sl]");
1856	MHCamEvent evt9(4, "ArrTm", "Extracted ArrivalTime;;T");
1857
1858	MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtractedSignal");
1859	MFillH fill9(&evt9, "MArrivalTimeCam", "FillArrivalTime");
1860
1861	tlist.AddToList(&fill2);
1862	tlist.AddToList(&fill9);
1863
1864	/*
1865	MFillH fillP("MHPulseShape", "", "FillPulseShape");
1866	fillP.SetNameTab("Pulse");
1867	tlist.AddToList(&fillP);
1868	*/
1869
1870	// Create and setup the eventloop
1871	MEvtLoop evtloop(fName);
1872	evtloop.SetParList(&plist);
1873	evtloop.SetDisplay(fDisplay);
1874	evtloop.SetLogStream(fLog);
1875	if (!SetupEnv(evtloop))
1876	return kFALSE;
1877
1878	if (!taskenv.GetTask() && !taskenv2.GetTask())
1879	{
1880	*fLog << err << "ERROR - Neither ExtractSignal nor ExtractTime initialized or both '<dummy>'." << endl;
1881	return kFALSE;
1882	}
1883
1884	if (!WriteTasks(taskenv.GetTask(), istimecharge ? 0 : taskenv2.GetTask()))
1885	return kFALSE;
1886
1887	// Execute first analysis
1888	const Bool_t rc = evtloop.Eventloop();
1889
1890	if (!fCalibrationPINDiode.IsValid())
1891	SetUsePINDiode(kFALSE);
1892
1893	const Int_t numexec = !fSequence.IsMonteCarlo() ? rawread.GetNumExecutions() : read.GetNumExecutions();
1894	if (numexec>0)
1895	{
1896	DisplayResult(plist);
1897	if (!WriteResult(plist))
1898	return kFALSE;
1899	}
1900
1901	if (!rc)
1902	{
1903	*fLog << err << GetDescriptor() << ": Failed." << endl;
1904	return kFALSE;
1905	}
1906
1907	// --------------------------------------------------------------------------------
1908
1909	if (fIsPixelCheck)
1910	{
1911	chargecam[fCheckedPixId].DrawClone("datacheck");
1912	chargecam(fCheckedPixId).DrawClone("datacheck");
1913
1914	if (IsRelTimes())
1915	{
1916	reltimecam[fCheckedPixId].DrawClone("");
1917	reltimecam(fCheckedPixId).DrawClone("");
1918	}
1919	}
1920
1921	*fLog << all << GetDescriptor() << ": Done." << endl;
1922
1923	return kTRUE;
1924	}
1925
1926	/*
1927	Bool_t MJCalibration::WriteEventloop(MEvtLoop &evtloop) const
1928	{
1929	if (IsNoStorage())
1930	return kTRUE;
1931
1932	if (fPathOut.IsNull())
1933	return kTRUE;
1934
1935	const TString oname(GetOutputFile());
1936
1937	*fLog << inf << "Writing to file: " << oname << endl;
1938
1939	TFile file(oname, fOverwrite?"RECREATE":"NEW", "File created by MJCalibration", 9);
1940	if (!file.IsOpen())
1941	{
1942	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
1943	return kFALSE;
1944	}
1945
1946	if (evtloop.Write(fName)<=0)
1947	{
1948	*fLog << err << "Unable to write MEvtloop to " << oname << endl;
1949	return kFALSE;
1950	}
1951
1952	return kTRUE;
1953	}
1954	*/
1955
1956	Bool_t MJCalibration::WriteTasks(MTask t1, MTask t2) const
1957	{
1958	if (IsNoStorage())
1959	return kTRUE;
1960
1961	TObjArray cont;
1962	if (t1)
1963	cont.Add(t1);
1964	if (t2)
1965	cont.Add(t2);
1966
1967	return WriteContainer(cont, GetOutputFileName(), fOverwrite?"RECREATE":"NEW");
1968	}
1969
1970	// --------------------------------------------------------------------------
1971	//
1972	// Write the result into the output file GetOutputFile(), if fOutputPath exists.
1973	//
1974	// The following containers are written:
1975	// - MStatusDisplay
1976	// - MCalibrationChargeCam
1977	// - MCalibrationBlindCam
1978	// - MCalibrationQECam
1979	// - MCalibrationChargePINDiode
1980	// - MBadPixelsCam
1981	//
1982	// If the flag kRelTimes is set, then also:
1983	// - MCalibrationRelTimeCam
1984	//
1985	Bool_t MJCalibration::WriteResult(MParList &plist)
1986	{
1987	if (IsNoStorage())
1988	return kTRUE;
1989
1990	TObjArray cont;
1991	cont.Add(&fBadPixels);
1992	cont.Add(&fCalibrationCam);
1993	cont.Add(&fQECam);
1994	cont.Add(&fCalibrationBlindCam);
1995	cont.Add(&fCalibrationPINDiode);
1996
1997	if (IsRelTimes())
1998	cont.Add(&fRelTimeCam);
1999
2000	if (fExtractorCam.GetSize() != 0)
2001	cont.Add(&fExtractorCam);
2002
2003	TObject *pedcam = plist.FindObject("MPedestalCam");
2004	if (!pedcam)
2005	*fLog << warn << " - WARNING - MPedestalCam (fundamental)... not found for writing!" << endl;
2006	else
2007	cont.Add(pedcam);
2008
2009	TObject *geom = plist.FindObject("MGeomCam");
2010	if (!geom)
2011	*fLog << warn << " - WARNING - MGeomCam... not found for writing!" << endl;
2012	else
2013	cont.Add(geom);
2014
2015	if (IsHistsStorage())
2016	{
2017	cont.Add(plist.FindObject("MHCalibrationChargeCam"));
2018	cont.Add(plist.FindObject("MHCalibrationChargeBlindCam"));
2019	cont.Add(plist.FindObject("MHCalibrationChargePINDiode"));
2020	if (IsRelTimes())
2021	cont.Add(plist.FindObject("MHCalibrationRelTimeCam"));
2022	}
2023
2024	return WriteContainer(cont, GetOutputFileName(), "UPDATE");
2025	}
2026
2027	void MJCalibration::DisplayDoubleProject(MHCamera cam, const char whatsmall, const char* whatbig) const
2028	{
2029
2030	TArrayI inner(1);
2031	inner[0] = 0;
2032
2033	TArrayI outer(1);
2034	outer[0] = 1;
2035
2036	TArrayI s1(3);
2037	s1[0] = 6;
2038	s1[1] = 1;
2039	s1[2] = 2;
2040
2041	TArrayI s2(3);
2042	s2[0] = 3;
2043	s2[1] = 4;
2044	s2[2] = 5;
2045
2046	TVirtualPad *pad = gPad;
2047	pad->Divide(2,1);
2048
2049	TH1D *inout[2];
2050
2051	for (int i=0; i<2; i++)
2052	{
2053	pad->cd(i+1);
2054	gPad->SetBorderMode(0);
2055	gPad->SetTicks();
2056
2057	inout[i] = cam->ProjectionS(TArrayI(), TArrayI(1,&i), i==0 ? "Inner" : "Outer");
2058	FixDataCheckHist(inout[i]);
2059	inout[i]->SetTitle(Form("%s %s",cam->GetTitle(),i==0 ? "Inner" : "Outer"));
2060	inout[i]->SetDirectory(NULL);
2061	inout[i]->SetLineColor(kRed+i);
2062	inout[i]->SetBit(kCanDelete);
2063	inout[i]->Draw();
2064	//
2065	// Display the outliers as dead and noisy pixels
2066	//
2067	if (!inout[i]->Fit("gaus","0Q"))
2068	DisplayOutliers(inout[i],whatsmall,whatbig);
2069
2070	gPad->Modified();
2071	gPad->Update();
2072	TPaveStats st = (TPaveStats)inout[i]->GetListOfFunctions()->FindObject("stats");
2073	st->SetY1NDC(0.6);
2074	st->SetY2NDC(0.9);
2075	st->SetX1NDC(0.55);
2076	st->SetX2NDC(0.99);
2077	gPad->Modified();
2078	gPad->Update();
2079
2080	TLegend *leg2 = new TLegend(0.55,0.4,0.99,0.6);
2081
2082	//
2083	// Display the two half of the camera separately
2084	//
2085	TH1D *half[2];
2086	half[0] = cam->ProjectionS(s1, TArrayI(1,&i), "Sector 6-1-2");
2087	half[1] = cam->ProjectionS(s2, TArrayI(1,&i), "Sector 3-4-5");
2088
2089	for (int j=0; j<2; j++)
2090	{
2091	half[j]->SetLineColor(kRed+i+2*j+1);
2092	half[j]->SetDirectory(NULL);
2093	half[j]->SetBit(kCanDelete);
2094	half[j]->Draw("same");
2095	leg2->AddEntry(half[j], half[j]->GetName(), "l");
2096	}
2097	leg2->Draw();
2098	}
2099	}

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