| 1 | #!/bin/sh
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| 2 | #
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| 3 | # ========================================================================
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| 4 | #
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| 5 | # *
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| 6 | # * This file is part of MARS, the MAGIC Analysis and Reconstruction
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| 7 | # * Software. It is distributed to you in the hope that it can be a useful
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| 8 | # * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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| 9 | # * It is distributed WITHOUT ANY WARRANTY.
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| 10 | # *
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| 11 | # * Permission to use, copy, modify and distribute this software and its
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| 12 | # * documentation for any purpose is hereby granted without fee,
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| 13 | # * provided that the above copyright notice appear in all copies and
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| 14 | # * that both that copyright notice and this permission notice appear
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| 15 | # * in supporting documentation. It is provided "as is" without express
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| 16 | # * or implied warranty.
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| 17 | # *
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| 18 | #
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| 19 | #
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| 20 | # Author(s): Daniela Dorner 06/2007 <mailto:dorner@astro.uni-wuerzburg.de>
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| 21 | #
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| 22 | # Copyright: MAGIC Software Development, 2000-2007
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| 23 | #
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| 24 | #
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| 25 | # ========================================================================
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| 26 | #
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| 27 | ##############################################################################
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| 28 | #
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| 29 | # This script is:
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| 30 | # - writing rc-files with different sets of cuts
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| 31 | # the set of cuts can be steered with the variables
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| 32 | # $par3step, $par3numminus, $par3num and
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| 33 | # $par1step, $par1numminus, $par1num
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| 34 | # par*step step width for changing the parameter *
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| 35 | # (suggested value: 0.005)
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| 36 | # par*numminus number of steps going to smaller values of the parameter *
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| 37 | # (starting value in your ganymed.rc file)
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| 38 | # par*num number of steps for changing the parameter *
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| 39 | # par3: Cut1.Param3 from the ganymed.rc file
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| 40 | # par1: Cut1.Param1 from the ganymed.rc file
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| 41 | # - writing a condor dag file for spectrum study
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| 42 | # With submitting this dag file with condor_submit_dag to condor from your
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| 43 | # Mars directroy you are running ganymed and sponde for all different rc
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| 44 | # files. The condor dag man is taking care of the order of the jobs,
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| 45 | # i.e. that sponde is started just when ganymed has been finished.
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| 46 | #
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| 47 | # To start several spondes please set the arrays $spondes.
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| 48 | # It is also possible to start new spondes without rerunning
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| 49 | # ganymed and/or the other spondes. To do so, please set the
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| 50 | # variables $doganymed and $spondedones accordingly
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| 51 | #
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| 52 | # Remark: You have to submit the condor dag file from your Mars directory.
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| 53 | #
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| 54 | # For more detailed information read the comments directly before
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| 55 | # each variable.
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| 56 | #
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| 57 | ##############################################################################
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| 58 | #
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| 59 |
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| 60 | #
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| 61 | # instructions and setup of the script
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| 62 | # please set the variables according to your analysis
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| 63 | #
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| 64 |
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| 65 | # path for you analysis
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| 66 | path=/home/dorner/final_analysis
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| 67 | # path where your condor dagfile is stored and where you need
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| 68 | # the files processds.submit and processsponde.submit
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| 69 | condorpath=$path/condor
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| 70 | # path to store your resourcefiles
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| 71 | # you should have there the ganymed.rc, which you want to use
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| 72 | # and your sponde.rc files
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| 73 | rcpath=$path/resources
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| 74 | ganymedrc=$rcpath/ganymed_onoff.rc
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| 75 | # outpath for your spectrum results
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| 76 | # a directory for each set of cuts will be created there and
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| 77 | # the ganymed and sponde output will be stored in these directories
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| 78 | specpath=/results/spectrumSet2
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| 79 | # name of your dataset
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| 80 | # it has to be stored as dataset$dataset.txt in the directory
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| 81 | # $path/datasets
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| 82 | dataset="20060002"
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| 83 | # this is the name of the condor-dag file, which you have to submit
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| 84 | # with condor_submit_dag from your Mars directory
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| 85 | dagfile=$condorpath/set2spectrum.dag3
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| 86 | # here you define whether ganymed still has to be done
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| 87 | # if yes, set the variable $doganymed to "yes"
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| 88 | #doganymed="yes"
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| 89 | doganymed="no"
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| 90 | # sponde.rc files have to be in the directory $rcpath
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| 91 | # they need to have the naming sponde1.rc, sponde2.rc, sponde3.rc
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| 92 | # (numbers in the following array)
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| 93 | # the sponde.root files will be named in the same way (sponde(num).root)
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| 94 | spondes=( 1 2 )
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| 95 | # in this array you define whether the sponde is already done
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| 96 | spondedones=( "done" "" )
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| 97 |
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| 98 | # this is the mc dataset, which has been created with the script
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| 99 | # preparemc
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| 100 | mcdataset=$path/mc/mcdataset2.txt
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| 101 |
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| 102 | # values for par3
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| 103 | par3step=0.005
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| 104 | par3numminus=10
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| 105 | par3num=13
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| 106 | # values for par1
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| 107 | par1step=0.005
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| 108 | par1numminus=1
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| 109 | par1num=7
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| 110 |
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| 111 | #
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| 112 | # end of setup
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| 113 | # beginning of script
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| 114 | #
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| 115 |
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| 116 | # some checks
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| 117 | # checking if the given files and paths are existing
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| 118 | if ! [ -e $mcdataset ]
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| 119 | then
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| 120 | echo "Your mc dataset file $mcdataset does not exist."
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| 121 | exit
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| 122 | fi
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| 123 | if ! [ -e $path$specpath ]
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| 124 | then
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| 125 | echo "Your output path $path$specpath does not exist."
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| 126 | exit
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| 127 | fi
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| 128 | if ! [ -e $path/datasets/dataset$dataset.txt ]
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| 129 | then
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| 130 | echo "Your dataset file $path/datasets/dataset$dataset.txt does not exist."
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| 131 | exit
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| 132 | fi
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| 133 | if ! [ -e $ganymedrc ]
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| 134 | then
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| 135 | echo "Your ganymed rc file $ganymedrc does not exist."
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| 136 | exit
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| 137 | fi
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| 138 | for (( l=0 ; l < ${#spondes[@]} ; l++ ))
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| 139 | do
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| 140 | if ! [ -e $rcpath/sponde${spondes[$l]}.rc ]
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| 141 | then
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| 142 | echo "Your sponde rc file $rcpath/sponde${spondes[$l]}.rc does not exist."
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| 143 | exit
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| 144 | fi
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| 145 | done
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| 146 |
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| 147 | # get the parameters
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| 148 | par3=`cat $ganymedrc | grep 'Cut1.Param3' | cut -d: -f2`
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| 149 | par1=`cat $ganymedrc | grep 'Cut1.Param1' | cut -d: -f2`
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| 150 | echo "parameters: "
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| 151 | echo " par3= $par3"
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| 152 | echo " par1= $par1"
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| 153 | echo ""
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| 154 |
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| 155 | # calculate the parameters with which you start
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| 156 | start3=`echo $par3 - \( $par3numminus*$par3step \) | bc `
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| 157 | start1=`echo $par1 - \( $par1numminus*$par1step \) | bc `
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| 158 | echo "start: "
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| 159 | echo " par1: $start1 "
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| 160 | echo " par3: $start3"
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| 161 | echo ""
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| 162 |
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| 163 |
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| 164 | # function to print the lines for ganymed to the dag file
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| 165 | function printganydagentry()
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| 166 | {
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| 167 | if [ "$doganymed" = "yes" ]
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| 168 | then
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| 169 | echo "JOB gany$name $condorpath/processds.submit"
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| 170 | else
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| 171 | echo "JOB gany$name $condorpath/processds.submit DONE"
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| 172 | fi
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| 173 | echo "VARS gany$name path=\"$path\""
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| 174 | echo "VARS gany$name out=\"$dir\""
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| 175 | echo "VARS gany$name ds=\"$dataset\""
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| 176 | echo "VARS gany$name num=\"$dataset\""
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| 177 | echo "VARS gany$name rc=\"$rcfile\""
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| 178 | echo ""
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| 179 | }
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| 180 |
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| 181 | # function to print the lines for sponde to the dag file
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| 182 | function printspecdagentry()
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| 183 | {
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| 184 | sponderc=$rcpath/sponde$1.rc
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| 185 | if [ "$2" = "done" ]
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| 186 | then
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| 187 | echo "JOB spec$1_$name $condorpath/processsponde.submit DONE"
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| 188 | else
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| 189 | echo "JOB spec$1_$name $condorpath/processsponde.submit"
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| 190 | fi
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| 191 | echo "VARS spec$1_$name path=\"/home/dorner/final_analysis\""
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| 192 | echo "VARS spec$1_$name out=\"$outpath\""
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| 193 | echo "VARS spec$1_$name rc=\"$sponderc\""
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| 194 | echo "VARS spec$1_$name spondenum=\"$1\""
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| 195 | echo "VARS spec$1_$name mcds=\"$mcdataset\""
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| 196 | echo "VARS spec$1_$name num=\"$dataset\""
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| 197 | echo ""
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| 198 | echo "PARENT gany$name CHILD spec$1_$name "
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| 199 | echo ""
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| 200 | }
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| 201 |
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| 202 | echo "writing dag file $dagfile for dataset $dataset"
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| 203 | echo "# dag file for dataset $dataset" > $dagfile
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| 204 | echo "" >> $dagfile
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| 205 | val1=$start1
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| 206 | val3=$start3
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| 207 | count=0
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| 208 | for (( i=0 ; i < $par3num ; i++ ))
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| 209 | do
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| 210 | for (( j=0 ; j < $par1num ; j++ ))
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| 211 | do
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| 212 | name=${val1}_${val3}
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| 213 | dir=$specpath/ganyspec$name
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| 214 | outpath=$path$dir
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| 215 | rcfile=$outpath/ganymed_${name}_onoff.rc
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| 216 | if ! [ -d $outpath ]
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| 217 | then
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| 218 | mkdir -v $outpath
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| 219 | fi
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| 220 | cat $ganymedrc | sed -e s/"${par1}"/" ${val1}"/ -e s/"${par3}"/" ${val3}"/ > $rcfile
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| 221 | val1=`echo $val1 + $par1step | bc`
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| 222 | echo " writing dag entry for set of cuts par1: $val1, par3: $val3"
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| 223 | echo "# ganymed and sponde for dataset $dataset with cuts $name" >> $dagfile
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| 224 | echo "" >> $dagfile
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| 225 | printganydagentry >> $dagfile
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| 226 | for (( k=0 ; k < ${#spondes[@]} ; k++ ))
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| 227 | do
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| 228 | printspecdagentry ${spondes[$k]} ${spondedones[$k]} >> $dagfile
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| 229 | done
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| 230 | echo "" >> $dagfile
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| 231 | count=`echo $count + 1 | bc`
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| 232 | done
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| 233 | val3=`echo $val3 + $par3step | bc`
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| 234 | val1=$start1
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| 235 | done
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| 236 |
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| 237 | echo ""
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| 238 | echo "finished writing condor dag file "$dagfile
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| 239 | echo "in total $count different sets of cuts are used"
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| 240 | echo ""
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| 241 | echo "you can submit it now with \"condor_submit_dag -f $dagfile\" from your Mars directory"
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| 242 | echo ""
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| 243 |
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