| 1 | #!/bin/sh
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| 2 | #
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| 3 | # ========================================================================
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| 4 | #
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| 5 | # *
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| 6 | # * This file is part of MARS, the MAGIC Analysis and Reconstruction
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| 7 | # * Software. It is distributed to you in the hope that it can be a useful
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| 8 | # * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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| 9 | # * It is distributed WITHOUT ANY WARRANTY.
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| 10 | # *
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| 11 | # * Permission to use, copy, modify and distribute this software and its
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| 12 | # * documentation for any purpose is hereby granted without fee,
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| 13 | # * provided that the above copyright notice appear in all copies and
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| 14 | # * that both that copyright notice and this permission notice appear
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| 15 | # * in supporting documentation. It is provided "as is" without express
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| 16 | # * or implied warranty.
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| 17 | # *
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| 18 | #
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| 19 | #
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| 20 | # Author(s): Daniela Dorner 10/2006 <mailto:dorner@astro.uni-wuerzburg.de>
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| 21 | #
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| 22 | # Copyright: MAGIC Software Development, 2000-2006
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| 23 | #
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| 24 | #
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| 25 | # ========================================================================
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| 26 | #
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| 27 | #
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| 28 | #
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| 29 | ##############################################################################
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| 30 | #
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| 31 | # This script can be used to run the following steps for one sequence:
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| 32 | # - callisto
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| 33 | # - merppupdate
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| 34 | # - star
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| 35 | #
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| 36 | # You have to set the path, where your Mars version can be found, the outpath,
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| 37 | # where you want to store the output and the sequencenumber of the sequence
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| 38 | # you want to process
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| 39 | #
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| 40 | ##############################################################################
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| 41 |
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| 42 | #to be set by the user (if you don't use the command-line options)
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| 43 | #path of your output directory
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| 44 | #outpath=/home/dorner/ToO
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| 45 | outpath=
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| 46 | #give either sequence number or sequence file (including path)
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| 47 | sequence=
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| 48 | sequfile=""
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| 49 |
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| 50 | function usage()
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| 51 | {
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| 52 | echo "Usage: $0 [options]"
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| 53 | echo "options:"
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| 54 | echo -n " --sequ sequence# "
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| 55 | echo " giving number of sequence which shall be processed "
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| 56 | echo -n " --sequ-file sequfile "
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| 57 | echo " giving sequencfile (including path) of sequence which shall be processed "
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| 58 | echo -n " --out outpath "
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| 59 | echo " giving the path where all outputfiles are stored "
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| 60 | echo -n " -cal "
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| 61 | echo " running only calibration"
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| 62 | echo -n " -b "
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| 63 | echo " running in non-interactive mode (i.e. you are not asked if the paths are ok)"
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| 64 | # echo -n " -merppu "
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| 65 | # echo " running only merppupdate"
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| 66 | echo -n " -star "
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| 67 | echo " running only star"
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| 68 | echo ""
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| 69 | echo "Remarks: "
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| 70 | echo " - you can set the variables (or part of it) also in the script "
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| 71 | echo " - you have to set the outpath and either the sequence number or the sequence file"
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| 72 | echo " (if both is set, the sequence given by the sequencefile is processed)"
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| 73 | echo ""
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| 74 | exit
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| 75 | }
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| 76 |
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| 77 | interactive="yes"
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| 78 |
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| 79 | while [ "$1" ]
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| 80 | do
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| 81 | case $1 in
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| 82 | --sequ) shift
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| 83 | sequence=$1
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| 84 | ;;
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| 85 | --mars) shift
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| 86 | mars=$1
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| 87 | ;;
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| 88 | --out) shift
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| 89 | outpath=$1
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| 90 | ;;
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| 91 | -b) interactive='no'
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| 92 | ;;
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| 93 | -cal) cal='yes'
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| 94 | ;;
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| 95 | # -merppu) merppu='yes'
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| 96 | # ;;
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| 97 | -star) star='yes'
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| 98 | ;;
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| 99 | --sequ-file) shift
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| 100 | sequfile=$1
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| 101 | ;;
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| 102 | -h) usage
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| 103 | ;;
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| 104 | *) echo "unknown option $1 "
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| 105 | usage
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| 106 | exit
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| 107 | ;;
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| 108 | esac
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| 109 | shift
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| 110 | done
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| 111 |
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| 112 | ##getting settings for root
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| 113 | #if [ "$mars" = "" ]
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| 114 | #then
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| 115 | # echo "WARNING Mars-Version has not been set"
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| 116 | # echo ""
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| 117 | # usage
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| 118 | #fi
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| 119 | #source $mars/datacenter/scripts/setup
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| 120 |
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| 121 | if [ "$outpath" = "" ]
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| 122 | then
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| 123 | echo "WARNING outpath has not been set"
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| 124 | echo ""
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| 125 | usage
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| 126 | fi
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| 127 |
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| 128 | if [ "$sequence" = "" ] && [ "$sequfile" = "" ]
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| 129 | then
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| 130 | echo "WARNING neither sequ nor sequfile has been set"
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| 131 | echo ""
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| 132 | usage
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| 133 | fi
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| 134 |
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| 135 | echo ""
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| 136 | echo "You have set the variables to: "
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| 137 | #echo "mars: "$mars
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| 138 | echo " outpath: "$outpath
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| 139 |
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| 140 | if [ "$sequfile" = "" ]
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| 141 | then
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| 142 | if ! n8=`printf %08d $sequence`
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| 143 | then
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| 144 | echo "your sequence number is not valid"
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| 145 | usage
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| 146 | exit
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| 147 | fi
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| 148 | no=`echo $n8 | cut -c 1-4`
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| 149 | sequfile="/magic/sequences/"$no"/sequence$n8.txt"
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| 150 | echo " sequence: "$sequence
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| 151 | echo " sequfile: "$sequfile
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| 152 | if ! [ "$star" = "yes" ] || [ "$cal" = "yes" ]
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| 153 | then
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| 154 | calpath=$outpath"/callisto/$n8"
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| 155 | echo " path where calibration files are stored : "$calpath
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| 156 | fi
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| 157 | if ! [ "$cal" = "yes" ] || [ "$star" = "yes" ]
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| 158 | then
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| 159 | starpath=$outpath"/star/$n8"
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| 160 | echo " path where star files are stored : "$starpath
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| 161 | fi
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| 162 | else
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| 163 | echo " sequfile: "$sequfile
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| 164 | if ! [ "$star" = "yes" ] || [ "$cal" = "yes" ]
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| 165 | then
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| 166 | calpath=$outpath"/callisto"
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| 167 | echo " path where calibration files are stored : "$calpath
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| 168 | fi
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| 169 | if ! [ "$cal" = "yes" ] || [ "$star" = "yes" ]
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| 170 | then
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| 171 | starpath=$outpath"/star"
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| 172 | echo " path where star files are stored : "$starpath
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| 173 | fi
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| 174 | fi
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| 175 |
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| 176 |
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| 177 | if [ "$interactive" = "yes" ]
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| 178 | then
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| 179 | echo ""
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| 180 | echo "paths ok? continue?"
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| 181 | echo "please insert y, if you want continue"
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| 182 | echo " n, if you want quit"
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| 183 |
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| 184 | answer=`head -n 1`
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| 185 | # echo "answer: "$answer
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| 186 | case $answer in
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| 187 | y) echo "continue processing sequence"
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| 188 | ;;
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| 189 | n) exit
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| 190 | ;;
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| 191 | *) echo "your answer is not clear -> exit"
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| 192 | exit
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| 193 | ;;
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| 194 | esac
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| 195 | fi
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| 196 |
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| 197 | exit
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| 198 |
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| 199 |
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| 200 | #cd $mars
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| 201 |
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| 202 | if ! [ "$star" = "yes" ] || [ "$cal" = "yes" ]
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| 203 | then
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| 204 | mkdir -pv $calpath
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| 205 |
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| 206 | echo "run callisto..."
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| 207 | echo "./callisto -b -q -f --log=$calpath/callisto$sequence.log --out=$calpath $sequfile "
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| 208 | ./callisto -b -q -f --log=$calpath/callisto$sequence.log --out=$calpath $sequfile
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| 209 | check=$?
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| 210 | case $check in
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| 211 | 0) echo "callisto finished sucessfully"
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| 212 | echo "";;
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| 213 | *) echo -n "ERROR: callisto returned $check - please check "
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| 214 | echo -n "http://www.astro.uni-wuerzburg.de/datacenter/instructions/intern/errorcoding.txt"
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| 215 | echo " for more details"
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| 216 | exit;;
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| 217 | esac
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| 218 |
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| 219 |
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| 220 | calfiles=`find $calpath -name [2][0][0-2][0-9][0,1][0-9][0-3][0-9]_*_Y_*.root`
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| 221 |
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| 222 | echo "run merpp update for calibrated files..."
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| 223 | echo "calibrated data files: "$calfiles
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| 224 |
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| 225 | for calfile in ${calfiles[@]}
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| 226 | do
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| 227 | echo "calfile: "$calfile
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| 228 | outpath=`dirname $calfile`
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| 229 | echo "outpath: "$outpath
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| 230 |
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| 231 | merpplogpath=$outpath"/merpplogs"
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| 232 | makedir $merpplogpath
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| 233 |
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| 234 | runno=`echo $calfile | cut -d_ -f2 | sed -e 's/^0//' | sed -e 's/^0//' | sed -e 's/^0//' `
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| 235 | ccfile=`find /magic/subsystemdata/cc/ -name [2][0][0-2][0-9][0,1][0-9][0-3][0-9]_*${runno}_[P,D,C,S]_*_S.rep`
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| 236 | cacofile=`find /magic/subsystemdata/caco/ -name dc_[2][0][0-2][0-9]_[0,1][0-9]_[0-3][0-9]_*${runno}_*.txt`
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| 237 | echo "runno: "$runno
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| 238 | echo "ccfile: "$ccfile
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| 239 | if [ "$ccfile" = "" ]
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| 240 | then
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| 241 | echo "no ccfile found for run "$runno
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| 242 | break
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| 243 | fi
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| 244 | echo "cacofile: "$cacofile
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| 245 | if [ "$cacofile" = "" ]
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| 246 | then
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| 247 | echo "no cacofile found for run "$runno
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| 248 | echo "finding cacofile..."
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| 249 | for (( i = 0; i <= 10; i++ ))
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| 250 | do
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| 251 | newrun=`echo $runno - $i | bc`
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| 252 | # echo "$missingcacorun + $i = $newrun"
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| 253 | path=`dirname $ccfile`
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| 254 | path=`echo $path | sed -e 's/cc/caco/'`
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| 255 | echo "path: "$path
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| 256 | cacofile=`find $path -name *$newrun*`
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| 257 | if [ "$cacofile" = "" ]
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| 258 | then
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| 259 | continue
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| 260 | else
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| 261 | break
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| 262 | echo "cacofile: "$cacofile
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| 263 | fi
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| 264 | done
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| 265 | fi
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| 266 |
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| 267 | logfile=$merpplogpath/merppccupdate$runno.log
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| 268 | echo "./merpp -u --log=$logfile --runfile=$runno $ccfile $calfile "
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| 269 | ./merpp -u --log=$logfile --runfile=$runno $ccfile $calfile
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| 270 | check=$?
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| 271 | case $check in
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| 272 | 0) ;;
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| 273 | *) echo "ERROR: merppccupdate returned $check "
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| 274 | echo "please check the logfile $logfile "
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| 275 | exit;;
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| 276 | esac
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| 277 |
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| 278 | logfile=$merpplogpath/merppcacoupdate$runno.log
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| 279 | echo "./merpp -u --log=$logfile --auto-time $cacofile $calfile "
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| 280 | ./merpp -u --log=$logfile --auto-time $cacofile $calfile
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| 281 | check=$?
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| 282 | case $check in
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| 283 | 0) ;;
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| 284 | *) echo "ERROR: merppcacoupdate returned $check "
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| 285 | echo "please check the logfile $logfile "
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| 286 | exit;;
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| 287 | esac
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| 288 | done
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| 289 | echo "merppupdate is finished"
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| 290 | echo ""
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| 291 | fi
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| 292 |
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| 293 | if ! [ "$cal" = "yes" ] || [ "$star" = "yes" ]
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| 294 | then
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| 295 | mkdir -pv $starpath
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| 296 |
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| 297 | echo "run star..."
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| 298 | logfile=$starpath/star$sequence.log
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| 299 | if ! ls $calpath
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| 300 | then
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| 301 | echo "couldn't find $calpath => taking standard inpath for star"
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| 302 | echo "./star -b -q -f --log=$logfile --out=$starpath $sequfile "
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| 303 | ./star -b -q -f --log=$logfile --out=$starpath $sequfile
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| 304 | else
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| 305 | echo "./star -b -q -f --log=$logfile --ind=$calpath --out=$starpath $sequfile "
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| 306 | ./star -b -q -f --log=$logfile --ind=$calpath --out=$starpath $sequfile
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| 307 | fi
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| 308 | check=$?
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| 309 | case $check in
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| 310 | 0) echo "star finished sucessfully"
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| 311 | echo "";;
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| 312 | *) echo "ERROR: star returned $check - please check "
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| 313 | echo "please check the logfile $logfile "
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| 314 | exit;;
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| 315 | esac
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| 316 |
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| 317 | echo "star is finished "
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| 318 | fi
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| 319 |
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| 320 |
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