
#include "CT1EgyEst.C"

#include "MBinning.h"
#include "MBlindPixelCalc.h"
#include "MContinue.h"
#include "MCT1PointingCorrCalc.h"

#include "MFCT1SelBasic.h"
#include "MFCT1SelStandard.h"
#include "MFCT1SelFinal.h"
#include "MFillH.h"

#include "MHillasCalc.h"
#include "MHillasSrcCalc.h"
#include "MImgCleanStd.h"

#include "MParList.h"
#include "MSigmabarCalc.h"
#include "MSrcPosCam.h"
#include "MTaskList.h"
#include "MWriteRootFile.h"



void InitBinnings(MParList *plist)
{
        gLog << "InitBinnings" << endl;

        //--------------------------------------------
        MBinning *binse = new MBinning("BinningE");
        //binse->SetEdgesLog(30, 1.0e2, 1.0e5);

	//This is Daniel's binning in energy:
        binse->SetEdgesLog(14, 296.296, 86497.6);
        plist->AddToList(binse);

        //--------------------------------------------

        MBinning *binssize = new MBinning("BinningSize");
        binssize->SetEdgesLog(50, 10, 1.0e5);
        plist->AddToList(binssize);

        MBinning *binsdistc = new MBinning("BinningDist");
        binsdistc->SetEdges(50, 0, 1.4);
        plist->AddToList(binsdistc);

        MBinning *binswidth = new MBinning("BinningWidth");
        binswidth->SetEdges(50, 0, 1.0);
        plist->AddToList(binswidth);

        MBinning *binslength = new MBinning("BinningLength");
        binslength->SetEdges(50, 0, 1.0);
        plist->AddToList(binslength);

        MBinning *binsalpha = new MBinning("BinningAlpha");
        binsalpha->SetEdges(100, -100, 100);
        plist->AddToList(binsalpha);

        MBinning *binsasym = new MBinning("BinningAsym");
        binsasym->SetEdges(50, -1.5, 1.5);
        plist->AddToList(binsasym);

        MBinning *binsm3l = new MBinning("BinningM3Long");
        binsm3l->SetEdges(50, -1.5, 1.5);
        plist->AddToList(binsm3l);

        MBinning *binsm3t = new MBinning("BinningM3Trans");
        binsm3t->SetEdges(50, -1.5, 1.5);
        plist->AddToList(binsm3t);

   
        //.....
        MBinning *binsb = new MBinning("BinningSigmabar");
        binsb->SetEdges( 100,  0.0,  5.0);
        plist->AddToList(binsb);

        MBinning *binth = new MBinning("BinningTheta");
        Double_t yedge[9] = 
                       {0.0, 17.5, 23.5, 29.5, 35.5, 42., 50., 60., 70.};
        //TArrayD yed(9,yedge);
        TArrayD yed;
        yed.Set(9,yedge);
        binth->SetEdges(yed);
        plist->AddToList(binth);

        MBinning *bincosth = new MBinning("BinningCosTheta");
        Double_t zedge[9]; 
        for (Int_t i=0; i<9; i++)
	{
          zedge[8-i] = cos(yedge[i]/kRad2Deg);
	}
        TArrayD zed(9,zedge);
        bincosth->SetEdges(zed);
        plist->AddToList(bincosth);

        MBinning *binsdiff = new MBinning("BinningDiffsigma2");
        binsdiff->SetEdges(100, -5.0, 20.0);
        plist->AddToList(binsdiff);

        // robert ----------------------------------------------
        MBinning *binsalphaf = new MBinning("BinningAlphaFlux");
        binsalphaf->SetEdges(100, -100, 100);
        plist->AddToList(binsalphaf);

	MBinning *binsdifftime = new MBinning("BinningTimeDiff");
	binsdifftime->SetEdges(50, 0, 10);
	plist->AddToList(binsdifftime);

	MBinning *binstime = new MBinning("BinningTime");
	binstime->SetEdges(50, 44500, 61000);
	plist->AddToList(binstime);
}

void DeleteBinnings(MParList *plist)
{
        gLog << "DeleteBinnings" << endl;

        TObject *bin;

        bin = plist->FindObject("BinningSize");
        if (bin) delete bin;

        bin = plist->FindObject("BinningDist");
        if (bin) delete bin;

        bin = plist->FindObject("BinningWidth");
        if (bin) delete bin;

        bin = plist->FindObject("BinningLength");
        if (bin) delete bin;

        bin = plist->FindObject("BinningAlpha");
        if (bin) delete bin;

        bin = plist->FindObject("BinningAsym");
        if (bin) delete bin;

        bin = plist->FindObject("BinningM3Long");
        if (bin) delete bin;

        bin = plist->FindObject("BinningM3Trans");
        if (bin) delete bin;

        //.....
        bin = plist->FindObject("BinningSigmabar");
        if (bin) delete bin;

        bin = plist->FindObject("BinningTheta");
        if (bin) delete bin;

        bin = plist->FindObject("BinningCosTheta");
        if (bin) delete bin;

        bin = plist->FindObject("BinningDiffsigma2");
        if (bin) delete bin;

        //robert
        bin = plist->FindObject("BinningAlphaFlux");
        if (bin) delete bin;

        bin = plist->FindObject("BinningTimeDiff");
        if (bin) delete bin;

        bin = plist->FindObject("BinningTime");
        if (bin) delete bin;
}

//************************************************************************
void CT1Analysis()
{
      gLog.SetNoColors();

      if (gRandom)
        delete gRandom;
      gRandom = new TRandom3(0);

      //-----------------------------------------------
      const char *offfile = "~magican/ct1test/wittek/offdata.preproc"; 

      //const char *onfile  = "~magican/ct1test/wittek/mkn421_on.preproc"; 
      const char *onfile  = "~magican/ct1test/wittek/mkn421_00-01"; 

      const char *mcfile  = "~magican/ct1test/wittek/mkn421_mc_pedrms_0.001.preproc";
      //-----------------------------------------------

      // path for input for Mars
      TString inPath = "~magican/ct1test/wittek/marsoutput/optionB/";

      // path for output from Mars
      TString outPath = "~magican/ct1test/wittek/marsoutput/optionB/";

      //-----------------------------------------------

      TEnv env("macros/CT1env.rc");
      Bool_t printEnv = kFALSE;

    //************************************************************************

    // Job A_ON : read ON data
    //  - generate sigmabar vs. Theta plot; 
    //  - write root file for ON data (ON1.root);

    Bool_t JobA_ON = kFALSE;  
    Bool_t WHistON = kFALSE;   // write out histogram sigmabar vs. Theta ?
    Bool_t WON1    = kFALSE;   // write out root file ON1.root ?


    // Job A_MC : read MC gamma data, 
    //  - read sigmabar vs. Theta plot from ON data  
    //  - do padding; 
    //  - write root file for MC gammas (MC1.root);

    Bool_t JobA_MC  = kFALSE;  
    Bool_t WMC1     = kFALSE;  // write out root file MC1.root ?


    // Job B_NN_UP : read ON1.root (or MC1.root) file 
    //  - depending on RlookNN : create (or read in) hadron and gamma matrix
    //  - calculate hadroness for method of NEAREST NEIGHBORS
    //    and for the SUPERCUTS
    //  - update the input files with the hadronesses (ON1.root or MC1.root)

    Bool_t JobB_NN_UP  = kFALSE;  
    Bool_t RLookNN     = kFALSE;  // read in look-alike events
    Bool_t WNN         = kFALSE;  // update input root file ?


    // Job B_SC_UP : read ON1.root (or MC1.root) file 
    //  - depending on WParSC : create (or read in) supercuts parameter values
    //  - calculate hadroness for the SUPERCUTS
    //  - update the input files with the hadroness (ON1.root or MC1.root)

    Bool_t JobB_SC_UP  = kTRUE;
    Bool_t RMatrix     = kFALSE;  // read matrices from file  
    Bool_t WParSC      = kFALSE;  // do optimization and write supercuts 
                                  // parameter values onto a file
    Bool_t WSC         = kFALSE;  // update input root file ?


    // Job B_RF_UP : read ON1.root (or MC1.root) file 
    //  - depending on RLook : create (or read in) hadron and gamma matrix
    //  - depending on RTree : create (or read in) trees
    //  - calculate hadroness for method of RANDOM FOREST
    //  - update the input files with the hadroness (ON1.root or MC1.root)

    Bool_t JobB_RF_UP  = kFALSE;  
    Bool_t RLookRF     = kFALSE;  // read in look-alike events
    Bool_t RTree       = kFALSE;  // read in trees
    Bool_t WRF         = kFALSE;  // update input root file ?



    // Job C: 
    //  - read ON1.root and MC1.root files
    //    which should have been updated to contain the hadronnesses  
    //    for the method of 
    //              NEAREST NEIGHBORS  
    //              SUPERCUTS and
    //              RF
    //  - produce Neyman-Pearson plots

    Bool_t JobC  = kFALSE;  


    // Job D :  
    //  - select g/h separation method XX
    //  - read ON2 (or MC2) root file
    //  - apply cuts in hadronness
    //  - make plots

    Bool_t JobD  = kFALSE;  


    // Job E_XX :  
    //  - select g/h separation method XX
    //  - read MC root file 
    //  - calculate eff. collection area
    //  - optimize energy estimator
    //  - read ON root file 
    //  - apply final cuts
    //  - write root file for ON data after final cuts 

    Bool_t JobE_XX  = kFALSE;  
    Bool_t WXX      = kFALSE;  // write out root file ?


    // Job F_XX : extended version of E_XX (including flux plots)  
    //  - select g/h separation method XX
    //  - read MC root file 
    //  - calculate eff. collection area
    //  - optimize energy estimator
    //  - read ON root file 
    //  - apply final cuts
    //  - calculate flux
    //  - write root file for ON data after final cuts 

    Bool_t JobF_XX  = kFALSE;  
    Bool_t WFX      = kFALSE;  // write out root file  ?


    //************************************************************************

    
  //---------------------------------------------------------------------
  // Job A_ON
  //=========
    // read ON data file 

    //  - produce the 2D-histogram "sigmabar versus Theta" 
    //    (SigmaTheta_ON.root) for ON data
    //    (to be used for the padding of the MC gamma data)

    //  - write a file of ON events (ON1.root) 
    //    (after the standard cuts, before the g/h separation)
    //    (to be used together with the corresponding MC gamma file (MC1.root)
    //     for the optimization of the g/h separation)


 if (JobA_ON)
 {
    gLog << "=====================================================" << endl;
    gLog << "Macro CT1Analysis : Start of Job A_ON" << endl;
    gLog << "" << endl;
    gLog << "Macro CT1Analysis : JobA_ON, WHistON, WON1 = " 
         << JobA_ON  << ",  " << WHistON << ",  " << WON1 << endl;


    // name of input root file
    TString filenamein(onfile);

    // name of output root file
    TString outNameImage = outPath;
    outNameImage += "ON";
    outNameImage += "1.root";

    //--------------------------------------------------
    // use for padding sigmabar vs. Theta from ON data
    TString typeHist = "ON";
    gLog << "typeHist = " << typeHist << endl;

    // name of file to conatin the histograms for the padding
    TString outNameSigTh = outPath;
    outNameSigTh += "SigmaTheta_";
    outNameSigTh += typeHist;
    outNameSigTh += ".root";


    //-----------------------------------------------------------
    MTaskList tliston;
    MParList pliston;

    char *sourceName = "MSrcPosCam";
    MSrcPosCam source(sourceName);

    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");

    //-------------------------------------------
    // create the tasks which should be executed 
    //

    MCT1ReadPreProc read(filenamein);

    MCT1PointingCorrCalc pointcorr(sourceName, "MCT1PointingCorrCalc", 
                                               "MCT1PointingCorrCalc");
    MBlindPixelCalc blind;
    blind.SetUseBlindPixels();

    MFCT1SelBasic selbasic;
    MContinue contbasic(&selbasic);
    contbasic.SetName("SelBasic");

    MFillH fillblind("BlindPixels[MHBlindPixels]", "MBlindPixels");
    fillblind.SetName("HBlind");

    MSigmabarCalc sigbarcalc;

    MFillH fillsigtheta ("SigmaTheta[MHSigmaTheta]", "MMcEvt");
    fillsigtheta.SetName("HSigmaTheta");

    MImgCleanStd    clean; 


    // calculation of  image parameters ---------------------
    TString fHilName    = "MHillas";
    TString fHilNameExt = "MHillasExt";
    TString fHilNameSrc = "MHillasSrc";
    TString fImgParName = "MNewImagePar";

    MHillasCalc    hcalc;
    hcalc.SetNameHillas(fHilName);
    hcalc.SetNameHillasExt(fHilNameExt);
    hcalc.SetNameNewImgPar(fImgParName);

    MHillasSrcCalc hsrccalc(sourceName, fHilNameSrc);
    hsrccalc.SetInput(fHilName);

    MFillH hfill1("MHHillas",    fHilName);
    hfill1.SetName("HHillas");

    MFillH hfill2("MHStarMap",   fHilName);
    hfill2.SetName("HStarMap");

    MFillH hfill3("MHHillasExt",   fHilNameSrc);
    hfill3.SetName("HHillasExt");

    MFillH hfill4("MHHillasSrc",   fHilNameSrc);
    hfill4.SetName("HHillasSrc");

    MFillH hfill5("MHNewImagePar", fImgParName);
    hfill5.SetName("HNewImagePar");
    // --------------------------------------------------

    MFCT1SelStandard selstandard(fHilNameSrc);
    selstandard.SetHillasName(fHilName);
    selstandard.SetImgParName(fImgParName);
    selstandard.SetCuts(92, 4, 60, 0.4, 1.05, 0.0, 0.0);
    MContinue contstandard(&selstandard);
    contstandard.SetName("SelStandard");

    if (WON1)
    {
      MWriteRootFile &write = *(new MWriteRootFile(outNameImage));

      write.AddContainer("MRawRunHeader", "RunHeaders");
      write.AddContainer("MTime",         "Events");
      write.AddContainer("MMcEvt",        "Events");
      write.AddContainer("ThetaOrig",     "Events");
      write.AddContainer("MSrcPosCam",    "Events");
      write.AddContainer("MSigmabar",     "Events");
      write.AddContainer("MHillas",       "Events");
      write.AddContainer("MHillasExt",    "Events");
      write.AddContainer("MHillasSrc",    "Events");
      write.AddContainer("MNewImagePar",  "Events");
    }

    //$$$$$$$$$$$$$$$$$$$$$$$$$$$$
    //MF daniel( "(MRawRunHeader.fRunNumber<13167)||(MRawRunHeader.fRunNumber>13167)" );
    //MContinue contdaniel(&daniel);
    //$$$$$$$$$$$$$$$$$$$$$$$$$$$$


    //*****************************
    // entries in MParList
    
    pliston.AddToList(&tliston);
    InitBinnings(&pliston);

    pliston.AddToList(&source);


    //*****************************
    // entries in MTaskList
    
    tliston.AddToList(&read);

    //$$$$$$$$$$$$$$$$
    //tliston.AddToList(&contdaniel);
    //$$$$$$$$$$$$$$$$

    tliston.AddToList(&pointcorr);
    tliston.AddToList(&blind);

    tliston.AddToList(&contbasic);
    tliston.AddToList(&fillblind);
    tliston.AddToList(&sigbarcalc);
    tliston.AddToList(&fillsigtheta);
    tliston.AddToList(&clean);

    tliston.AddToList(&hcalc);
    tliston.AddToList(&hsrccalc);

    tliston.AddToList(&hfill1);
    tliston.AddToList(&hfill2);
    tliston.AddToList(&hfill3);
    tliston.AddToList(&hfill4);
    tliston.AddToList(&hfill5);

    tliston.AddToList(&contstandard);
    if (WON1)
      tliston.AddToList(&write);

    //*****************************

    //-------------------------------------------
    // Execute event loop
    //
    MProgressBar bar;
    MEvtLoop evtloop;
    evtloop.SetParList(&pliston);
    evtloop.ReadEnv(env, "", printEnv);
    evtloop.SetProgressBar(&bar);
    //if (WON1)
    //  evtloop.Write();

    Int_t maxevents = -1;
    //Int_t maxevents = 1000;
    if ( !evtloop.Eventloop(maxevents) )
        return;

    tliston.PrintStatistics(0, kTRUE);


    //-------------------------------------------
    // Display the histograms

    pliston.FindObject("SigmaTheta", "MHSigmaTheta")->DrawClone();

    pliston.FindObject("BlindPixels", "MHBlindPixels")->DrawClone();

    pliston.FindObject("MHHillas")->DrawClone();
    pliston.FindObject("MHHillasExt")->DrawClone();
    pliston.FindObject("MHHillasSrc")->DrawClone();
    pliston.FindObject("MHNewImagePar")->DrawClone();
    pliston.FindObject("MHStarMap")->DrawClone();



    //-------------------------------------------
    // Write histograms onto a file
  if (WHistON)
  {
      MHSigmaTheta *sigtheta = 
            (MHSigmaTheta*)pliston.FindObject("SigmaTheta");

      MHBlindPixels *blindpixels = 
            (MHBlindPixels*)pliston.FindObject("BlindPixels");
      if (!sigtheta  ||  !blindpixels)
	{
          gLog << "Object 'SigmaTheta' or 'BlindPixels' not found" << endl;
          return;
	}
      TH2D *fHSigTh    = sigtheta->GetSigmaTheta();
      TH3D *fHSigPixTh = sigtheta->GetSigmaPixTheta();
      TH3D *fHDifPixTh = sigtheta->GetDiffPixTheta();

      TH2D *fHBlindId  = blindpixels->GetBlindId();
      TH2D *fHBlindN   = blindpixels->GetBlindN();


      TFile outfile(outNameSigTh, "RECREATE");
      fHSigTh->Write();
      fHSigPixTh->Write();
      fHDifPixTh->Write();
     
      fHBlindId->Write();
      fHBlindN->Write();

      gLog << "" << endl;
      gLog << "File " << outNameSigTh << " was written out" << endl;
  }


    DeleteBinnings(&pliston);

    gLog << "Macro CT1Analysis : End of Job A_ON" << endl;
    gLog << "===================================================" << endl;
 }


  //---------------------------------------------------------------------
   // Job A_MC
   //=========

    // read MC gamma data  

    //    - to pad them
    //      (using the 2D-histogram "sigmabar versus Theta" 
    //       (SigmaTheta_ON.root)  of the ON data)

    //    - to write a file of padded MC gamma events (MC1.root)
    //      (after the standard cuts, before the g/h separation)
    //      (to be used together with the corresponding hadron file
    //       for the optimization of the g/h separation)


 if (JobA_MC)
 {
    gLog << "=====================================================" << endl;
    gLog << "Macro CT1Analysis : Start of Job A_MC" << endl;

    gLog << "" << endl;
    gLog << "Macro CT1Analysis : JobA_MC, WMC1 = " 
         << JobA_MC  << ",  " << WMC1 << endl;


    // name of input root file
    TString filenamein(mcfile);

    // name of output root file
    TString outNameImage = outPath;
    outNameImage += "MC";
    outNameImage += "1.root";

    //------------------------------------------------
    // use for padding sigmabar vs. Theta from ON data
    TString typeHist = "ON";
    gLog << "typeHist = " << typeHist << endl;

    // name of file containing the histograms for the padding
    TString outNameSigTh = outPath;
    outNameSigTh += "SigmaTheta_";
    outNameSigTh += typeHist;
    outNameSigTh += ".root";


    //------------------------------------
    // Get the histograms "2D-ThetaSigmabar"
    // and                "3D-ThetaPixSigma"
    // and                "3D-ThetaPixDiff"
    // and                "2D-IdBlindPixels"
    // and                "2D-NBlindPixels"


      gLog << "Reading in file " << outNameSigTh << endl;

      TFile *infile = new TFile(outNameSigTh);
      infile->ls();

      TH2D *fHSigmaTheta = 
      (TH2D*) gROOT->FindObject("2D-ThetaSigmabar");
      if (!fHSigmaTheta)
	{
          gLog << "Object '2D-ThetaSigmabar' not found on root file" << endl;
          return;
	}
      gLog << "Object '2D-ThetaSigmabar' was read in" << endl;

      TH3D *fHSigmaPixTheta = 
      (TH3D*) gROOT->FindObject("3D-ThetaPixSigma");
      if (!fHSigmaPixTheta)
	{
          gLog << "Object '3D-ThetaPixSigma' not found on root file" << endl;
          return;
	}
      gLog << "Object '3D-ThetaPixSigma' was read in" << endl;

      TH3D *fHDiffPixTheta = 
      (TH3D*) gROOT->FindObject("3D-ThetaPixDiff");
      if (!fHDiffPixTheta)
	{
          gLog << "Object '3D-ThetaPixDiff' not found on root file" << endl;
          return;
	}
      gLog << "Object '3D-ThetaPixDiff' was read in" << endl;


      TH2D *fHIdBlindPixels = 
      (TH2D*) gROOT->FindObject("2D-IdBlindPixels");
      if (!fHIdBlindPixels)
	{
          gLog << "Object '2D-IdBlindPixels' not found on root file" << endl;
          return;
	}
      gLog << "Object '2D-IdBlindPixels' was read in" << endl;

      TH2D *fHNBlindPixels = 
      (TH2D*) gROOT->FindObject("2D-NBlindPixels");
      if (!fHNBlindPixels)
	{
          gLog << "Object '2D-NBlindPixels' not found on root file" << endl;
          return;
	}
      gLog << "Object '2D-NBlindPixels' was read in" << endl;

    //------------------------------------

    MTaskList tlist;
    MParList plist;

    char *sourceName = "MSrcPosCam";
    MSrcPosCam source(sourceName);


    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)plist->FindCreateObj("MGeomCamCT1", "MGeomCam");

    //-------------------------------------------
    // create the tasks which should be executed 
    //

    MCT1ReadPreProc read(filenamein);

    MBlindPixelCalc blind;
    blind.SetUseBlindPixels();

    MFCT1SelBasic selbasic;
    MContinue contbasic(&selbasic);
    contbasic.SetName("SelBasic");


    // There are 2 options for Thomas Schweizer's padding
    //     fPadFlag = 1   get Sigmabar from fHSigmaTheta
    //                    and Sigma    from fHDiffPixTheta
    //     fPadFlag = 2   get Sigma    from fHSigmaPixTheta
    
    MCT1PadSchweizer padthomas("MCT1PadSchweizer","Task for the padding (Schweizer)");
    padthomas.SetHistograms(fHSigmaTheta, fHSigmaPixTheta, fHDiffPixTheta,
                            fHIdBlindPixels, fHNBlindPixels);
    padthomas.SetPadFlag(1);

    MFillH fillblind("MCBlindPixels[MHBlindPixels]", "MBlindPixels");
    fillblind.SetName("HBlind");


    //...........................................

    MSigmabarCalc sigbarcalc;

    MFillH fillsigtheta ("MCSigmaTheta[MHSigmaTheta]", "MMcEvt");
    fillsigtheta.SetName("HSigmaTheta");

    MImgCleanStd    clean; 

    // calculation of  image parameters ---------------------
    TString fHilName    = "MHillas";
    TString fHilNameExt = "MHillasExt";
    TString fHilNameSrc = "MHillasSrc";
    TString fImgParName = "MNewImagePar";

    MHillasCalc    hcalc;
    hcalc.SetNameHillas(fHilName);
    hcalc.SetNameHillasExt(fHilNameExt);
    hcalc.SetNameNewImgPar(fImgParName);

    MHillasSrcCalc hsrccalc(sourceName, fHilNameSrc);
    hsrccalc.SetInput(fHilName);


    MFillH hfill1("MHHillas",    fHilName);
    hfill1.SetName("HHillas");

    MFillH hfill2("MHStarMap",   fHilName);
    hfill2.SetName("HStarMap");

    MFillH hfill3("MHHillasExt",   fHilNameSrc);
    hfill3.SetName("HHillasExt");

    MFillH hfill4("MHHillasSrc",   fHilNameSrc);
    hfill4.SetName("HHillasSrc");

    MFillH hfill5("MHNewImagePar", fImgParName);
    hfill5.SetName("HNewImagePar");
    // --------------------------------------------------

    MFCT1SelStandard selstandard(fHilNameSrc);
    selstandard.SetHillasName(fHilName);
    selstandard.SetImgParName(fImgParName);
    selstandard.SetCuts(92, 4, 60, 0.4, 1.05, 0.0, 0.0);
    MContinue contstandard(&selstandard);
    contstandard.SetName("SelStandard");


    if (WMC1)
    {
      MWriteRootFile &write = *(new MWriteRootFile(outNameImage));

      write.AddContainer("MRawRunHeader", "RunHeaders");
      write.AddContainer("MTime",         "Events");
      write.AddContainer("MMcEvt",        "Events");
      write.AddContainer("ThetaOrig",     "Events");
      write.AddContainer("MSrcPosCam",    "Events");
      write.AddContainer("MSigmabar",     "Events");
      write.AddContainer("MHillas",       "Events");
      write.AddContainer("MHillasExt",    "Events");
      write.AddContainer("MHillasSrc",    "Events");
      write.AddContainer("MNewImagePar",  "Events");
    }


    //*****************************
    // entries in MParList

    plist.AddToList(&tlist);
    InitBinnings(&plist);

    plist.AddToList(&source);


    //*****************************
    // entries in MTaskList

    tlist.AddToList(&read);
    tlist.AddToList(&padthomas);
    tlist.AddToList(&blind);

    tlist.AddToList(&contbasic);
    tlist.AddToList(&fillblind);
    tlist.AddToList(&sigbarcalc);
    tlist.AddToList(&fillsigtheta);
    tlist.AddToList(&clean);

    tlist.AddToList(&hcalc);
    tlist.AddToList(&hsrccalc);

    tlist.AddToList(&hfill1);
    tlist.AddToList(&hfill2);
    tlist.AddToList(&hfill3);
    tlist.AddToList(&hfill4);
    tlist.AddToList(&hfill5);

    tlist.AddToList(&contstandard);
    if (WMC1)
      tlist.AddToList(&write);

    //*****************************


    //-------------------------------------------
    // Execute event loop
    //
    MProgressBar bar;
    MEvtLoop evtloop;
    evtloop.SetParList(&plist);
    evtloop.ReadEnv(env, "", printEnv);
    evtloop.SetProgressBar(&bar);
    //if (WMC1)    
    //  evtloop.Write();

    Int_t maxevents = -1;
    //Int_t maxevents = 1000;
    if ( !evtloop.Eventloop(maxevents) )
        return;

    tlist.PrintStatistics(0, kTRUE);


    //-------------------------------------------
    // Display the histograms
    //

    plist.FindObject("MCSigmaTheta",  "MHSigmaTheta")->DrawClone();
    plist.FindObject("MCBlindPixels", "MHBlindPixels")->DrawClone();

    plist.FindObject("MHHillas")->DrawClone();
    plist.FindObject("MHHillasExt")->DrawClone();
    plist.FindObject("MHHillasSrc")->DrawClone();
    plist.FindObject("MHNewImagePar")->DrawClone();
    plist.FindObject("MHStarMap")->DrawClone();



    DeleteBinnings(&plist);

    gLog << "Macro CT1Analysis : End of Job A_MC" 
         << endl;
    gLog << "=========================================================" 
         << endl;
 }



  //---------------------------------------------------------------------
  // Job B_NN_UP
  //============

    //  - read in the matrices of look-alike events for gammas and hadrons

    // then read ON1.root (or MC1.root) file 
    //
    //  - calculate the hadroness for the method of nearest neighbors
    //
    //  - update input root file, including the hadroness


 if (JobB_NN_UP)
 {
    gLog << "=====================================================" << endl;
    gLog << "Macro CT1Analysis : Start of Job B_NN_UP" << endl;

    gLog << "" << endl;
    gLog << "Macro CT1Analysis : JobB_NN_UP, RLookNN, WNN = " 
         << JobB_NN_UP  << ",  " << RLookNN << ",  " << WNN << endl;



    //--------------------------------------------
    // file to be updated (either ON or MC)

    TString typeInput = "ON";
    //TString typeInput = "MC";
    gLog << "typeInput = " << typeInput << endl;

    // name of input root file
    TString filenameData = outPath;
    filenameData += typeInput;
    filenameData += "1.root";
    gLog << "filenameData = " << filenameData << endl; 

    // name of output root file
    TString outNameImage = outPath;
    outNameImage += typeInput;
    outNameImage += "2.root";

    //TString outNameImage = filenameData;

    gLog << "outNameImage = " << outNameImage << endl; 

    //--------------------------------------------
    // files to be read for generating the look-alike events
    // "hadrons" :
    TString filenameON = outPath;
    filenameON += "ON";
    filenameON += "1.root";
    Int_t howManyHadrons = 500000;
    gLog << "filenameON = " << filenameON << ",   howManyHadrons = "
         << howManyHadrons  << endl; 
    

    // "gammas" :
    TString filenameMC = outPath;
    filenameMC += "MC";
    filenameMC += "1.root";
    Int_t howManyGammas = 50000;
    gLog << "filenameMC = " << filenameMC << ",   howManyGammas = "
         << howManyGammas   << endl; 
    
    //--------------------------------------------
    // files of look-alike events 

    TString outNameGammas = outPath;
    outNameGammas += "matrix_gammas_";
    outNameGammas += "MC";
    outNameGammas += ".root";

    TString typeMatrixHadrons = "ON";
    gLog << "typeMatrixHadrons = " << typeMatrixHadrons << endl;

    TString outNameHadrons = outPath;
    outNameHadrons += "matrix_hadrons_";
    outNameHadrons += typeMatrixHadrons;
    outNameHadrons += ".root";


    MHMatrix matrixg("MatrixGammas");
    MHMatrix matrixh("MatrixHadrons");

   //*************************************************************************
   // read in matrices of look-alike events
if (RLookNN)
  {
    const char* mtxName = "MatrixGammas";

    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << "Get matrix for (gammas)" << endl;
    gLog << "matrix name        = " << mtxName << endl;
    gLog << "name of root file  = " << outNameGammas << endl;
    gLog << "" << endl;


    // read in the object with the name 'mtxName' from file 'outNameGammas'
    //
    TFile fileg(outNameGammas); 

    matrixg.Read(mtxName);
    matrixg.Print("cols");


    //***************************************************************** 

    const char* mtxName = "MatrixHadrons";

    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << " Get matrix for (hadrons)" << endl;
    gLog << "matrix name        = " << mtxName << endl;
    gLog << "name of root file  = " << outNameHadrons << endl;
    gLog << "" << endl;


    // read in the object with the name 'mtxName' from file 'outNameHadrons'
    //
    TFile fileh(outNameHadrons); 

    matrixh.Read(mtxName);
    matrixh.Print("cols");
  }


   //*************************************************************************
   // create matrices of look-alike events
if (!RLookNN)
  {
    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << " Create matrices of look-alike events" << endl;
    gLog << " Gammas :" << endl;


    MParList  plistg;
    MTaskList tlistg;
    MFilterList flistg;

    MParList  plisth;
    MTaskList tlisth;
    MFilterList flisth;

    MReadMarsFile  readg("Events", filenameMC);
    readg.DisableAutoScheme();

    MReadMarsFile  readh("Events", filenameON);
    readh.DisableAutoScheme();

    MFParticleId fgamma("MMcEvt", '=', kGAMMA);
    fgamma.SetName("gammaID");
    MFParticleId fhadrons("MMcEvt", '!', kGAMMA);
    fhadrons.SetName("hadronID)");

    MFEventSelector selectorg;
    selectorg.SetNumSelectEvts(howManyGammas);
    selectorg.SetName("selectGammas");
    MFEventSelector selectorh;
    selectorh.SetNumSelectEvts(howManyHadrons);
    selectorh.SetName("selectHadrons");

    MFillH fillmatg("MatrixGammas");
    fillmatg.SetFilter(&flistg);
    fillmatg.SetName("fillGammas");

    MFillH fillmath("MatrixHadrons");
    fillmath.SetFilter(&flisth);
    fillmath.SetName("fillHadrons");

    
    //*****************************   fill gammas   ***  
    // entries in MFilterList

    flistg.AddToList(&fgamma);
    flistg.AddToList(&selectorg);

    //*****************************  
    // entries in MParList
    
    plistg.AddToList(&tlistg);
    InitBinnings(&plistg);

    plistg.AddToList(&matrixg);

    //*****************************
    // entries in MTaskList
    
    tlistg.AddToList(&readg);
    tlistg.AddToList(&flistg);
    tlistg.AddToList(&fillmatg);

    //*****************************

    MProgressBar matrixbar;
    MEvtLoop evtloopg;
    evtloopg.SetParList(&plistg);
    evtloopg.ReadEnv(env, "", printEnv);
    evtloopg.SetProgressBar(&matrixbar);

    Int_t maxevents = -1;
    if (!evtloopg.Eventloop(maxevents))
        return;

    tlistg.PrintStatistics(0, kTRUE);


    //*****************************   fill hadrons   ***  

    gLog << " Hadrons :" << endl;
    // entries in MFilterList

    flisth.AddToList(&fhadrons);
    flisth.AddToList(&selectorh);

    //*****************************  
    // entries in MParList
    
    plisth.AddToList(&tlisth);
    InitBinnings(&plisth);

    plisth.AddToList(&matrixh);

    //*****************************
    // entries in MTaskList
    
    tlisth.AddToList(&readh);
    tlisth.AddToList(&flisth);
    tlisth.AddToList(&fillmath);

    //*****************************

    MProgressBar matrixbar;
    MEvtLoop evtlooph;
    evtlooph.SetParList(&plisth);
    evtlooph.ReadEnv(env, "", printEnv);
    evtlooph.SetProgressBar(&matrixbar);

    Int_t maxevents = -1;
    if (!evtlooph.Eventloop(maxevents))
        return;

    tlisth.PrintStatistics(0, kTRUE);
    //*****************************************************  

    //^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    //
    // ----------------------------------------------------------
    //  Definition of the reference sample of look-alike events
    //  (this is a subsample of the original sample)
    // ----------------------------------------------------------
    //
    gLog << "" << endl;
    gLog << "========================================================" << endl;
    // Select a maximum of nmaxevts events from the sample of look-alike 
    // events. They will form the reference sample.
    Int_t nmaxevts  = 2000;

    // target distribution for the variable in column refcolumn (start at 0);
    //Int_t   refcolumn = 0;
    //Int_t   nbins   =   5;
    //Float_t frombin = 0.5;
    //Float_t tobin   = 1.0;
    //TH1F *thsh = new TH1F("thsh","target distribution", 
    //                       nbins, frombin, tobin);
    //thsh->SetDirectory(NULL);
    //thsh->SetXTitle("cos( \\Theta)");
    //thsh->SetYTitle("Counts");
    //Float_t dbin = (tobin-frombin)/nbins;
    //Float_t lbin = frombin +dbin*0.5;
    //for (Int_t j=1; j<=nbins; j++) 
    //{
    //  thsh->Fill(lbin,1.0);
    //  lbin += dbin;
    //}

    Int_t   refcolumn = 0;
    MBinning *binscostheta = (MBinning*)plistg->FindObject("BinningCosTheta", "MBinning");
    TH1F *thsh = new TH1F();
    thsh->SetNameTitle("thsh","target distribution");
    MH::SetBinning(thsh, binscostheta);
    Int_t nbins = thsh->GetNbinsX();
    Double_t cont[8] = {1500, 1500, 1500, 3250, 3250, 3900, 3900, 3900};
    for (Int_t j=1; j<=nbins; j++) 
    {
      thsh->Fill(thsh->GetBinCenter(j), cont[j-1]);
    }

    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << "Macro CT1Analysis : define reference sample for gammas" << endl; 
    gLog << "Macro CT1Analysis : Parameters for reference sample : refcolumn, nmaxevts = "
         << refcolumn << ",  " << nmaxevts << endl;    

    matrixg.EnableGraphicalOutput();
    Bool_t matrixok = matrixg.DefRefMatrix(refcolumn, *thsh, nmaxevts);

    if ( !matrixok ) 
    {
      gLog << "Macro CT1Analysis : Reference matrix for gammas cannot be defined" << endl;
      return;
    }

    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << "Macro CT1Analysis : define reference sample for hadrons" << endl; 
    gLog << "Macro CT1Analysis : Parameters for reference sample : refcolumn, nmaxevts = "
         << refcolumn << ",  " << nmaxevts << endl;    

    matrixh.EnableGraphicalOutput();
    matrixok = matrixh.DefRefMatrix(refcolumn, *thsh, nmaxevts);
    delete thsh;

    if ( !matrixok ) 
    {
      gLog << "Macro CT1Analysis : Reference matrix for hadrons cannot be defined" << endl;
      return;
    }
    //^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

    // write out look-alike events

    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << "Write out look=alike events" << endl;


      //-------------------------------------------
      // "gammas"
      gLog << "Gammas :" << endl;    
      matrixg.Print("cols");

      TFile writeg(outNameGammas, "RECREATE", "");
      matrixg.Write();

      gLog << "" << endl;
      gLog << "Macro CT1Analysis : matrix of look-alike events for gammas written onto file "
           << outNameGammas << endl;

      //-------------------------------------------
      // "hadrons"
      gLog << "Hadrons :" << endl;    
      matrixh.Print("cols");

      TFile writeh(outNameHadrons, "RECREATE", "");
      matrixh.Write();

      gLog << "" << endl;
      gLog << "Macro CT1Analysis : matrix of look-alike events for hadrons written onto file "
           << outNameHadrons << endl;

  }
   //**********   end of creating matrices of look-alike events   ***********


    //-----------------------------------------------------------------
    // Update the input files with the NN and SC hadronness
    //

 if (WNN)
  {
    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << "Update input file '" <<  filenameData 
         << "' with the NN and SC hadronness" << endl;

    MTaskList tliston;
    MParList pliston;


    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");

    //-------------------------------------------
    // create the tasks which should be executed 
    //

    MReadMarsFile read("Events", filenameData);
    read.DisableAutoScheme();

    TString fHilName    = "MHillas"; 
    TString fHilNameExt = "MHillasExt"; 
    TString fHilNameSrc = "MHillasSrc"; 
    TString fImgParName = "MNewImagePar"; 

    //.......................................................................
    // calculation of hadroness for method of Nearest Neighbors

    TString hadNNName = "HadNN";
    MMultiDimDistCalc nncalc;
    nncalc.SetUseNumRows(25);
    nncalc.SetUseKernelMethod(kFALSE);
    nncalc.SetHadronnessName(hadNNName);

    //.......................................................................
    // calculation of hadroness for the supercuts
    // (=0.25 if fullfilled, =0.75 otherwise)

    TString hadSCName = "HadSC";
    MCT1SupercutsCalc sccalc(fHilName, fHilNameSrc);
    sccalc.SetHadronnessName(hadSCName);

    //.......................................................................

      //MWriteRootFile write(outNameImage, "UPDATE");
      MWriteRootFile write(outNameImage, "RECREATE");

      write.AddContainer("MRawRunHeader", "RunHeaders");
      write.AddContainer("MTime",         "Events");
      write.AddContainer("MMcEvt",        "Events");
      write.AddContainer("ThetaOrig",     "Events");
      write.AddContainer("MSrcPosCam",    "Events");
      write.AddContainer("MSigmabar",     "Events");
      write.AddContainer("MHillas",       "Events");
      write.AddContainer("MHillasExt",    "Events");
      write.AddContainer("MHillasSrc",    "Events");
      write.AddContainer("MNewImagePar",  "Events");

      write.AddContainer("HadNN",         "Events");
      write.AddContainer("HadSC",         "Events");


    //-----------------------------------------------------------------
    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");

    Float_t maxhadronness =  0.40;
    Float_t maxalpha      =  20.0;
    Float_t maxdist       =  10.0;

    MFCT1SelFinal selfinalgh(fHilNameSrc);
    selfinalgh.SetCuts(maxhadronness, 100.0, maxdist);
    selfinalgh.SetHadronnessName(hadNNName);
    selfinalgh.SetName("SelFinalgh");
    MContinue contfinalgh(&selfinalgh);
    contfinalgh.SetName("ContSelFinalgh");

    MFillH fillhadnn("hadNN[MHHadronness]", hadNNName);
    fillhadnn.SetName("HhadNN");
    MFillH fillhadsc("hadSC[MHHadronness]", hadSCName);
    fillhadsc.SetName("HhadSC");

    MFCT1SelFinal selfinal(fHilNameSrc);
    selfinal.SetCuts(maxhadronness, maxalpha, maxdist);
    selfinal.SetHadronnessName(hadNNName);
    selfinal.SetName("SelFinal");
    MContinue contfinal(&selfinal);
    contfinal.SetName("ContSelFinal");


    MFillH hfill1("MHHillas",    fHilName);
    hfill1.SetName("HHillas");

    MFillH hfill2("MHStarMap",   fHilName);
    hfill2.SetName("HStarMap");

    MFillH hfill3("MHHillasExt",    fHilNameSrc);
    hfill3.SetName("HHillasExt");
    
    MFillH hfill4("MHHillasSrc",   fHilNameSrc);
    hfill4.SetName("HHillasSrc");    

    MFillH hfill5("MHNewImagePar", fImgParName);
    hfill5.SetName("HNewImagePar");

    //*****************************
    // entries in MParList

    pliston.AddToList(&tliston);
    InitBinnings(&pliston);

    pliston.AddToList(&matrixg);
    pliston.AddToList(&matrixh);


    //*****************************
    // entries in MTaskList
    
    tliston.AddToList(&read);

    tliston.AddToList(&nncalc);
    tliston.AddToList(&sccalc);
    tliston.AddToList(&fillhadnn);
    tliston.AddToList(&fillhadsc);

    tliston.AddToList(&hfill1);
    tliston.AddToList(&hfill2);
    tliston.AddToList(&hfill3);
    tliston.AddToList(&hfill4);
    tliston.AddToList(&hfill5);

    tliston.AddToList(&write);

    tliston.AddToList(&contfinalgh);
    tliston.AddToList(&contfinal);

    //*****************************

    //-------------------------------------------
    // Execute event loop
    //
    MProgressBar bar;
    MEvtLoop evtloop;
    evtloop.SetParList(&pliston);
    evtloop.SetProgressBar(&bar);

    Int_t maxevents = -1;
    if ( !evtloop.Eventloop(maxevents) )
        return;

    tliston.PrintStatistics(0, kTRUE);

    //-------------------------------------------
    // Display the histograms
    //
    pliston.FindObject("hadNN", "MHHadronness")->DrawClone();
    pliston.FindObject("hadSC", "MHHadronness")->DrawClone();

    pliston.FindObject("MHHillas")->DrawClone();
    pliston.FindObject("MHHillasExt")->DrawClone();
    pliston.FindObject("MHHillasSrc")->DrawClone();
    pliston.FindObject("MHNewImagePar")->DrawClone();
    pliston.FindObject("MHStarMap")->DrawClone();

    DeleteBinnings(&pliston);
  }



    gLog << "Macro CT1Analysis : End of Job B_NN_UP" << endl;
    gLog << "=======================================================" << endl;
 }
  //---------------------------------------------------------------------


  //---------------------------------------------------------------------
  // Job B_SC_UP
  //============

    //  - create (or read in) optimum supercuts parameter values
    //
    //  - calculate the hadroness for the supercuts
    //
    //  - update input root file, including the hadroness


 if (JobB_SC_UP)
 {
    gLog << "=====================================================" << endl;
    gLog << "Macro CT1Analysis : Start of Job B_SC_UP" << endl;

    gLog << "" << endl;
    gLog << "Macro CT1Analysis : JobB_SC_UP, WParSC, WSC = " 
         << JobB_SC_UP  << ",  " << WParSC << ",  " << WSC << endl;



    //--------------------------------------------
    // file to be updated (either ON or MC)

    TString typeInput = "ON";
    //TString typeInput = "MC";
    gLog << "typeInput = " << typeInput << endl;

    // name of input root file
    TString filenameData = outPath;
    filenameData += typeInput;
    filenameData += "2.root";
    gLog << "filenameData = " << filenameData << endl; 

    // name of output root file
    TString outNameImage = outPath;
    outNameImage += typeInput;
    outNameImage += "3.root";
    outNameImage += "xxxxx";
    

    //TString outNameImage = filenameData;

    gLog << "outNameImage = " << outNameImage << endl; 

    //--------------------------------------------
    // files to be read for optimizing the supercuts
    // 
    // for the training
    TString filenameTrain = outPath;
    filenameTrain += "ON";
    filenameTrain += "2.root";
    Int_t howManyTrain = 800000;
    gLog << "filenameTrain = " << filenameTrain << ",   howManyTrain = "
         << howManyTrain  << endl; 

    // for testing
    TString filenameTest = outPath;
    filenameTest += "ON";
    filenameTest += "2.root";
    Int_t howManyTest = 100000;

    gLog << "filenameTest = " << filenameTest << ",   howManyTest = "
         << howManyTest  << endl; 
    

    //--------------------------------------------
    // files to contain the matrices (genertated from filenameTrain and
    //                                                filenameTest)
    // 
    // for the training
    TString fileMatrixTrain = outPath;
    fileMatrixTrain += "MatrixTrainSC";
    fileMatrixTrain += ".root";
    gLog << "fileMatrixTrain = " << fileMatrixTrain << endl; 

    // for testing
    TString fileMatrixTest = outPath;
    fileMatrixTest += "MatrixTestSC";
    fileMatrixTest += ".root";
    gLog << "fileMatrixTest = " << fileMatrixTest << endl; 

    
    //--------------------------------------------
    // file which contains the optimum parameter values for the supercuts 

    TString parSCfile = outPath;
    parSCfile += "parSC";

    gLog << "parSCfile = " << parSCfile << endl;


    //---------------------------------------------------------------------
    // optimize supercuts using the training sample
    // and test them using the test sample

if (WParSC)
  {
    MCT1FindSupercuts findsuper;
    findsuper.SetFilenameParam(parSCfile);
    findsuper.SetHadronnessName("HadSC");


    //--------------------------
    // create matrices 
    if (!RMatrix)
    {
      MH3 &mh3 = *(new MH3("MHillas.fSize"));
      mh3.SetName("Target distribution for SIZE");

      if (filenameTrain == filenameTest)
      {
        findsuper.DefineTrainTestMatrix(filenameTrain, 
                                        howManyTrain, mh3,
                                        howManyTest,  mh3);
      }
      else
      {
        findsuper.DefineTrainMatrix(filenameTrain, howManyTrain, mh3);
        findsuper.DefineTestMatrix( filenameTest,  howManyTest,  mh3);
      }
 
      // writing doesn't work ???
      //findsuper.WriteMatrix(fileMatrixTrain, fileMatrixTest);
    }

    //--------------------------
    // read matrices from files
    //                              NOT YET TESTED
    //if (RMatrix)
    //  findsuper.ReadMatrix(fileMatrixTrain, fileMatrixTest);
    //--------------------------


    //--------------------------
    // optimize the supercuts
    Bool_t rf = findsuper.FindParams();

    if (!rf) 
    {
      *fLog << "CT1Analysis.C : optimization of supercuts failed" << endl;
       return;
    }

    //--------------------------------------
    // test the supercuts on the test sample
    //    
    Bool_t rt = findsuper.TestParams();
  }


    //-----------------------------------------------------------------
    // Update the input files with the SC hadronness
    //


    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << "Update input file '" <<  filenameData 
         << "' with the SC hadronness" << endl;


    //----------------------------------------------------
    // read in optimum parameter values for the supercuts

    TFile inparam(parSCfile);
    MCT1Supercuts scin;
    scin.Read("MCT1Supercuts");
    inparam.Close();

    gLog << "Optimum parameter values for supercuts were read in from file '"
         << parSCfile << "'" << endl;

    TArrayD supercutsPar(72);
    scin.GetParams(72, supercutsPar);

    gLog << "Optimum parameter values for supercuts : " << endl;
    for (Int_t i=0; i<72; i++)
    {
      gLog << supercutsPar[i] << ",  ";
    }
    gLog << endl;


    //----------------------------------------------------
    MTaskList tliston;
    MParList pliston;

    // set the parameters of the supercuts
    MCT1Supercuts supercuts;
    supercuts.SetParams(72, supercutsPar);
    gLog << "parameter values for the supercuts used for updating the input file ' " 
         << filenameData << "'" << endl;
    supercuts.GetParams(72, supercutsPar);
    for (Int_t i=0; i<72; i++)
    {
      gLog << supercutsPar[i] << ",  ";
    }
    gLog << endl;


    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");

    //-------------------------------------------
    // create the tasks which should be executed 
    //

    MReadMarsFile read("Events", filenameData);
    read.DisableAutoScheme();

    TString fHilName    = "MHillas"; 
    TString fHilNameExt = "MHillasExt"; 
    TString fHilNameSrc = "MHillasSrc"; 
    TString fImgParName = "MNewImagePar"; 


    //.......................................................................
    // calculation of hadroness for the supercuts
    // (=0.25 if fullfilled, =0.75 otherwise)

    TString hadSCName = "HadSC";
    MCT1SupercutsCalc sccalc(fHilName, fHilNameSrc);
    sccalc.SetHadronnessName(hadSCName);


    //.......................................................................


 if (WSC)
  {
      //MWriteRootFile write(outNameImage, "UPDATE");
      MWriteRootFile write = new MWriteRootFile(outNameImage, "RECREATE");

      write.AddContainer("MRawRunHeader", "RunHeaders");
      write.AddContainer("MTime",         "Events");
      write.AddContainer("MMcEvt",        "Events");
      write.AddContainer("ThetaOrig",     "Events");
      write.AddContainer("MSrcPosCam",    "Events");
      write.AddContainer("MSigmabar",     "Events");
      write.AddContainer("MHillas",       "Events");
      write.AddContainer("MHillasExt",    "Events");
      write.AddContainer("MHillasSrc",    "Events");
      write.AddContainer("MNewImagePar",  "Events");

      write.AddContainer("HadNN",         "Events");
      write.AddContainer("HadSC",         "Events");
  }


    //-----------------------------------------------------------------
    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");

    Float_t maxhadronness =  0.40;
    Float_t maxalpha      =  20.0;
    Float_t maxdist       =  10.0;

    MFCT1SelFinal selfinalgh(fHilNameSrc);
    selfinalgh.SetCuts(maxhadronness, 100.0, maxdist);
    selfinalgh.SetHadronnessName(hadSCName);
    selfinalgh.SetName("SelFinalgh");
    MContinue contfinalgh(&selfinalgh);
    contfinalgh.SetName("ContSelFinalgh");

    MFillH fillhadsc("hadSC[MHHadronness]", hadSCName);
    fillhadsc.SetName("HhadSC");

    MFCT1SelFinal selfinal(fHilNameSrc);
    selfinal.SetCuts(maxhadronness, maxalpha, maxdist);
    selfinal.SetHadronnessName(hadSCName);
    selfinal.SetName("SelFinal");
    MContinue contfinal(&selfinal);
    contfinal.SetName("ContSelFinal");

    TString mh3name = "abs(Alpha)";
    MBinning binsalphaabs("Binning"+mh3name);
    binsalphaabs.SetEdges(50, -2.0, 98.0);

    MH3 alphaabs("abs(MHillasSrc.fAlpha)");
    alphaabs.SetName(mh3name);
    MFillH alpha(&alphaabs);
    alpha.SetName("FillAlphaAbs");

    MFillH hfill1("MHHillas",    fHilName);
    hfill1.SetName("HHillas");

    MFillH hfill2("MHStarMap",   fHilName);
    hfill2.SetName("HStarMap");

    MFillH hfill3("MHHillasExt",    fHilNameSrc);
    hfill3.SetName("HHillasExt");
    
    MFillH hfill4("MHHillasSrc",   fHilNameSrc);
    hfill4.SetName("HHillasSrc");    

    MFillH hfill5("MHNewImagePar", fImgParName);
    hfill5.SetName("HNewImagePar");

    //*****************************
    // entries in MParList

    pliston.AddToList(&tliston);
    InitBinnings(&pliston);
    pliston.AddToList(&binsalphaabs);
    pliston.AddToList(&alphaabs);
    pliston.AddToList(&supercuts);

    //*****************************
    // entries in MTaskList
    
    tliston.AddToList(&read);

    tliston.AddToList(&sccalc);
    tliston.AddToList(&fillhadsc);
    tliston.AddToList(&contfinalgh);

    tliston.AddToList(&alpha);
    tliston.AddToList(&hfill1);
    tliston.AddToList(&hfill2);
    tliston.AddToList(&hfill3);
    tliston.AddToList(&hfill4);
    tliston.AddToList(&hfill5);

    if (WSC)
      tliston.AddToList(&write);

    tliston.AddToList(&contfinal);

    //*****************************

    //-------------------------------------------
    // Execute event loop
    //
    MProgressBar bar;
    MEvtLoop evtloop;
    evtloop.SetParList(&pliston);
    evtloop.SetProgressBar(&bar);

    Int_t maxevents = -1;
    if ( !evtloop.Eventloop(maxevents) )
        return;

    tliston.PrintStatistics(0, kTRUE);


    //-------------------------------------------
    // Display the histograms
    //
    pliston.FindObject("hadSC", "MHHadronness")->DrawClone();

    pliston.FindObject("MHHillas")->DrawClone();
    pliston.FindObject("MHHillasExt")->DrawClone();
    pliston.FindObject("MHHillasSrc")->DrawClone();
    pliston.FindObject("MHNewImagePar")->DrawClone();
    pliston.FindObject("MHStarMap")->DrawClone();

     //-------------------------------------------
    // fit alpha distribution to get the number of excess events and
    // calculate significance of gamma signal in the alpha plot
  
    MH3* absalpha = (MH3*)(pliston.FindObject(mh3name, "MH3"));
    TH1  &alphaHist = absalpha->GetHist();
    alphaHist.SetXTitle("|alpha|  [\\circ]");

    Double_t alphasig = 13.1;
    Double_t alphamin = 30.0;
    Double_t alphamax = 90.0;
    Int_t    degree   =    2;
    Double_t significance = -99.0;
    Bool_t   drawpoly  = kTRUE;
    Bool_t   fitgauss  = kTRUE;
    Bool_t   print     = kTRUE;

    MHFindSignificance findsig;
    findsig.SetRebin(kTRUE);
    findsig.SetReduceDegree(kFALSE);

    findsig.FindSigma(&alphaHist, alphamin, alphamax, degree, 
                        alphasig, drawpoly, fitgauss, print);
    significance = findsig.GetSignificance();
    Float_t alphasi = findsig.GetAlphasi();

    gLog << "For file '" << filenameData << "' : " << endl;
    gLog << "Significance of gamma signal after supercuts : "
         << significance << " (for |alpha| < " << alphasi << " degrees)" 
         << endl;

    findsig.SigmaVsAlpha(&alphaHist, alphamin, alphamax, degree, print);

    //-------------------------------------------

    DeleteBinnings(&pliston);

    gLog << "Macro CT1Analysis : End of Job B_SC_UP" << endl;
    gLog << "=======================================================" << endl;
 }
  //---------------------------------------------------------------------


  //---------------------------------------------------------------------
  // Job B_RF_UP
  //============


    //  - create (or read in) the matrices of look-alike events for gammas 
    //    and hadrons
    //  - create (or read in) the trees
    //  - then read ON1.root (or MC1.root) file 
    //  - calculate the hadroness for the method of RANDOM FOREST
    //  - update input root file with the hadroness


 if (JobB_RF_UP)
 {
    gLog << "=====================================================" << endl;
    gLog << "Macro CT1Analysis : Start of Job B_RF_UP" << endl;

    gLog << "" << endl;
    gLog << "Macro CT1Analysis : JobB_RF_UP, RLookRF, RTree, WRF = " 
         << JobB_RF_UP  << ",  " << RLookRF << ",  " << RTree << ",  "
         << WRF << endl;



    //--------------------------------------------
    // parameters for the random forest
    Int_t NumTrees = 100;
    Int_t NumTry   =   3;
    Int_t NdSize   =   3;


    //--------------------------------------------
    // file to be updated (either ON or MC)

    TString typeInput = "ON";
    //TString typeInput = "MC";
    gLog << "typeInput = " << typeInput << endl;

    // name of input root file
    TString filenameData = outPath;
    filenameData += typeInput;
    filenameData += "2.root";
    gLog << "filenameData = " << filenameData << endl; 

    // name of output root file
    TString outNameImage = outPath;
    outNameImage += typeInput;
    outNameImage += "3.root";
    //TString outNameImage = filenameData;

    gLog << "outNameImage = " << outNameImage << endl; 

    //--------------------------------------------
    // files to be read for generating the look-alike events
    // "hadrons" :
    TString filenameON = outPath;
    filenameON += "ON";
    filenameON += "1.root";
    Int_t howManyHadrons = 1000000;
    gLog << "filenameON = " << filenameON << ",   howManyHadrons = "
         << howManyHadrons  << endl; 
    

    // "gammas" :
    TString filenameMC = outPath;
    filenameMC += "MC";
    filenameMC += "1.root";
    Int_t howManyGammas = 50000;
    gLog << "filenameMC = " << filenameMC << ",   howManyGammas = "
         << howManyGammas   << endl; 
    
    //--------------------------------------------
    // files of look-alike events 

    TString outNameGammas = outPath;
    outNameGammas += "RFmatrix_gammas_";
    outNameGammas += "MC";
    outNameGammas += ".root";

    TString typeMatrixHadrons = "ON";
    gLog << "typeMatrixHadrons = " << typeMatrixHadrons << endl;

    TString outNameHadrons = outPath;
    outNameHadrons += "RFmatrix_hadrons_";
    outNameHadrons += typeMatrixHadrons;
    outNameHadrons += ".root";


    MHMatrix matrixg("MatrixGammas");
    MHMatrix matrixh("MatrixHadrons");

    //--------------------------------------------
    // file of trees of the random forest 

    TString outRF = outPath;
    outRF += "RF.root";


   //*************************************************************************
   // read in matrices of look-alike events
if (RLookRF)
  {
    const char* mtxName = "MatrixGammas";

    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << "Get matrix for (gammas)" << endl;
    gLog << "matrix name        = " << mtxName << endl;
    gLog << "name of root file  = " << outNameGammas << endl;
    gLog << "" << endl;


    // read in the object with the name 'mtxName' from file 'outNameGammas'
    //
    TFile fileg(outNameGammas); 

    matrixg.Read(mtxName);
    matrixg.Print("cols");


    //***************************************************************** 

    const char* mtxName = "MatrixHadrons";

    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << " Get matrix for (hadrons)" << endl;
    gLog << "matrix name        = " << mtxName << endl;
    gLog << "name of root file  = " << outNameHadrons << endl;
    gLog << "" << endl;


    // read in the object with the name 'mtxName' from file 'outNameHadrons'
    //
    TFile fileh(outNameHadrons); 

    matrixh.Read(mtxName);
    matrixh.Print("cols");
  }


   //*************************************************************************
   // create matrices of look-alike events
if (!RLookRF)
  {
    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << " Create matrices of look-alike events" << endl;
    gLog << " Gammas :" << endl;


    MParList  plistg;
    MTaskList tlistg;
    MFilterList flistg;

    MParList  plisth;
    MTaskList tlisth;
    MFilterList flisth;

    MReadMarsFile  readg("Events", filenameMC);
    readg.DisableAutoScheme();

    MReadMarsFile  readh("Events", filenameON);
    readh.DisableAutoScheme();

    MFParticleId fgamma("MMcEvt", '=', kGAMMA);
    fgamma.SetName("gammaID");
    MFParticleId fhadrons("MMcEvt", '!', kGAMMA);
    fhadrons.SetName("hadronID)");

    MFEventSelector selectorg;
    selectorg.SetNumSelectEvts(howManyGammas);
    selectorg.SetName("selectGammas");
    MFEventSelector selectorh;
    selectorh.SetNumSelectEvts(howManyHadrons);
    selectorh.SetName("selectHadrons");

    MFillH fillmatg("MatrixGammas");
    fillmatg.SetFilter(&flistg);
    fillmatg.SetName("fillGammas");

    MFillH fillmath("MatrixHadrons");
    fillmath.SetFilter(&flisth);
    fillmath.SetName("fillHadrons");

    
    //*****************************   fill gammas   ***  
    // entries in MFilterList

    flistg.AddToList(&fgamma);
    flistg.AddToList(&selectorg);

    //*****************************  
    // entries in MParList
    
    plistg.AddToList(&tlistg);
    InitBinnings(&plistg);

    plistg.AddToList(&matrixg);

    //*****************************
    // entries in MTaskList
    
    tlistg.AddToList(&readg);
    tlistg.AddToList(&flistg);
    tlistg.AddToList(&fillmatg);

    //*****************************

    MProgressBar matrixbar;
    MEvtLoop evtloopg;
    evtloopg.SetParList(&plistg);
    evtloopg.ReadEnv(env, "", printEnv);
    evtloopg.SetProgressBar(&matrixbar);

    Int_t maxevents = -1;
    if (!evtloopg.Eventloop(maxevents))
        return;

    tlistg.PrintStatistics(0, kTRUE);


    //*****************************   fill hadrons   ***  

    gLog << " Hadrons :" << endl;
    // entries in MFilterList

    flisth.AddToList(&fhadrons);
    flisth.AddToList(&selectorh);

    //*****************************  
    // entries in MParList
    
    plisth.AddToList(&tlisth);
    InitBinnings(&plisth);

    plisth.AddToList(&matrixh);

    //*****************************
    // entries in MTaskList
    
    tlisth.AddToList(&readh);
    tlisth.AddToList(&flisth);
    tlisth.AddToList(&fillmath);

    //*****************************

    MProgressBar matrixbar;
    MEvtLoop evtlooph;
    evtlooph.SetParList(&plisth);
    evtlooph.ReadEnv(env, "", printEnv);
    evtlooph.SetProgressBar(&matrixbar);

    Int_t maxevents = -1;
    if (!evtlooph.Eventloop(maxevents))
        return;

    tlisth.PrintStatistics(0, kTRUE);
    //*****************************************************  

    //^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    //
    // ----------------------------------------------------------
    //  Definition of the reference sample of look-alike events
    //  (this is a subsample of the original sample)
    // ----------------------------------------------------------
    //
    gLog << "" << endl;
    gLog << "========================================================" << endl;
    // Select a maximum of nmaxevts events from the sample of look-alike 
    // events. They will form the reference sample.
    Int_t nmaxevts  = 10000;

    // target distribution for the variable in column refcolumn (start at 0);
    //Int_t   refcolumn = 0;
    //Int_t   nbins   =   5;
    //Float_t frombin = 0.5;
    //Float_t tobin   = 1.0;
    //TH1F *thsh = new TH1F("thsh","target distribution", 
    //                       nbins, frombin, tobin);
    //thsh->SetDirectory(NULL);
    //thsh->SetXTitle("cos( \\Theta)");
    //thsh->SetYTitle("Counts");
    //Float_t dbin = (tobin-frombin)/nbins;
    //Float_t lbin = frombin +dbin*0.5;
    //for (Int_t j=1; j<=nbins; j++) 
    //{
    //  thsh->Fill(lbin,1.0);
    //  lbin += dbin;
    //}

    Int_t   refcolumn = 0;
    MBinning *binscostheta = (MBinning*)plistg->FindObject("BinningCosTheta", "MBinning");
    TH1F *thsh = new TH1F();
    thsh->SetNameTitle("thsh","target distribution");
    MH::SetBinning(thsh, binscostheta);
    Int_t nbins = thsh->GetNbinsX();
    Double_t cont[8] = {1500, 1500, 1500, 3250, 3250, 3900, 3900, 3900};
    for (Int_t j=1; j<=nbins; j++) 
    {
      thsh->Fill(thsh->GetBinCenter(j), cont[j-1]);
    }

    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << "Macro CT1Analysis : define reference sample for gammas" << endl; 
    gLog << "Macro CT1Analysis : Parameters for reference sample : refcolumn, nmaxevts = "
         << refcolumn << ",  " << nmaxevts << endl;    

    matrixg.EnableGraphicalOutput();
    Bool_t matrixok = matrixg.DefRefMatrix(refcolumn, *thsh, nmaxevts);

    if ( !matrixok ) 
    {
      gLog << "Macro CT1Analysis : Reference matrix for gammas cannot be defined" << endl;
      return;
    }

    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << "Macro CT1Analysis : define reference sample for hadrons" << endl; 
    gLog << "Macro CT1Analysis : Parameters for reference sample : refcolumn, nmaxevts = "
         << refcolumn << ",  " << nmaxevts << endl;    

    matrixh.EnableGraphicalOutput();
    matrixok = matrixh.DefRefMatrix(refcolumn, *thsh, nmaxevts);
    delete thsh;

    if ( !matrixok ) 
    {
      gLog << "Macro CT1Analysis : Reference matrix for hadrons cannot be defined" << endl;
      return;
    }
    //^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

    // write out look-alike events

    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << "Write out look=alike events" << endl;


      //-------------------------------------------
      // "gammas"
      gLog << "Gammas :" << endl;    
      matrixg.Print("cols");

      TFile writeg(outNameGammas, "RECREATE", "");
      matrixg.Write();

      gLog << "" << endl;
      gLog << "Macro CT1Analysis : matrix of look-alike events for gammas written onto file "
           << outNameGammas << endl;

      //-------------------------------------------
      // "hadrons"
      gLog << "Hadrons :" << endl;    
      matrixh.Print("cols");

      TFile writeh(outNameHadrons, "RECREATE", "");
      matrixh.Write();

      gLog << "" << endl;
      gLog << "Macro CT1Analysis : matrix of look-alike events for hadrons written onto file "
           << outNameHadrons << endl;

  }
   //**********   end of creating matrices of look-alike events   ***********


    MRanForest *fRanForest;
    MRanTree *fRanTree;
    //-----------------------------------------------------------------
    // read in the trees of the random forest 
    if (RTree)
    {
      MParList plisttr;
      MTaskList tlisttr;
      plisttr.AddToList(&tlisttr);

      MReadTree readtr("TREE", outRF);
      readtr.DisableAutoScheme();

      MRanForestFill rffill;
      rffill.SetNumTrees(NumTrees);

      // list of tasks for the loop over the trees

      tlisttr.AddToList(&readtr);
      tlisttr.AddToList(&rffill);

      //-------------------
      // Execute tree loop
      //
      MEvtLoop evtlooptr;
      evtlooptr.SetParList(&plisttr);
      if (!evtlooptr.Eventloop())
        return;

      tlisttr.PrintStatistics(0, kTRUE);


    // get adresses of objects which are used in the next eventloop
    fRanForest = (MRanForest*)plisttr->FindObject("MRanForest");
    if (!fRanForest)
    {
        *fLog << err << dbginf << "MRanForest not found... aborting." << endl;
        return kFALSE;
    }

    fRanTree = (MRanTree*)plisttr->FindObject("MRanTree");
    if (!fRanTree)                                  
    {                                                                          
        *fLog << err << dbginf << "MRanTree not found... aborting." << endl;    
        return kFALSE;
    }

    }

    //-----------------------------------------------------------------
    // grow the trees of the random forest (event loop = tree loop)

    if (!RTree)
    {

    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << "Macro CT1Analysis : start growing trees" << endl;

    MTaskList tlist2;
    MParList plist2;
    plist2.AddToList(&tlist2);

    plist2.AddToList(&matrixg);
    plist2.AddToList(&matrixh);

    MRanForestGrow rfgrow2;
    rfgrow2.SetNumTrees(NumTrees);
    rfgrow2.SetNumTry(NumTry);
    rfgrow2.SetNdSize(NdSize);

    MWriteRootFile rfwrite2(outRF);
    rfwrite2.AddContainer("MRanTree", "TREE");

    // list of tasks for the loop over the trees
    
    tlist2.AddToList(&rfgrow2);
    tlist2.AddToList(&rfwrite2);

    //-------------------
    // Execute tree loop
    //
    MEvtLoop treeloop;
    treeloop.SetParList(&plist2);

    if ( !treeloop.Eventloop() )
        return;

    tlist2.PrintStatistics(0, kTRUE);

    // get adresses of objects which are used in the next eventloop
    fRanForest = (MRanForest*)plist2->FindObject("MRanForest");
    if (!fRanForest)
    {
        *fLog << err << dbginf << "MRanForest not found... aborting." << endl;
        return kFALSE;
    }

    fRanTree = (MRanTree*)plist2->FindObject("MRanTree");
    if (!fRanTree)                                  
    {                                                                          
        *fLog << err << dbginf << "MRanTree not found... aborting." << endl;    
        return kFALSE;
    }

    }
    // end of growing the trees of the random forest
    //-----------------------------------------------------------------




    //-----------------------------------------------------------------
    // Update the input files with the RF hadronness
    //

 if (WRF)
  {
    gLog << "" << endl;
    gLog << "========================================================" << endl;
    gLog << "Update input file '" <<  filenameData 
         << "' with the RF hadronness" << endl;

    MTaskList tliston;
    MParList pliston;


    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");

    //-------------------------------------------
    // create the tasks which should be executed 
    //

    MReadMarsFile read("Events", filenameData);
    read.DisableAutoScheme();

    TString fHilName    = "MHillas"; 
    TString fHilNameExt = "MHillasExt"; 
    TString fHilNameSrc = "MHillasSrc"; 
    TString fImgParName = "MNewImagePar"; 

    //.......................................................................
    // calculate hadronnes for method of RANDOM FOREST

    TString hadRFName = "HadRF";
    MRanForestCalc rfcalc;
    rfcalc.SetHadronnessName(hadRFName);

    //.......................................................................

      //MWriteRootFile write(outNameImage, "UPDATE");
      MWriteRootFile write(outNameImage, "RECREATE");

      write.AddContainer("MRawRunHeader", "RunHeaders");
      write.AddContainer("MTime",         "Events");
      write.AddContainer("MMcEvt",        "Events");
      write.AddContainer("ThetaOrig",     "Events");
      write.AddContainer("MSrcPosCam",    "Events");
      write.AddContainer("MSigmabar",     "Events");
      write.AddContainer("MHillas",       "Events");
      write.AddContainer("MHillasExt",    "Events");
      write.AddContainer("MHillasSrc",    "Events");
      write.AddContainer("MNewImagePar",  "Events");

      write.AddContainer("HadNN",         "Events");
      write.AddContainer("HadSC",         "Events");

      write.AddContainer(hadRFName,       "Events");


    //-----------------------------------------------------------------
    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");


    Float_t maxhadronness =  0.40;
    Float_t maxalpha      =  20.0;
    Float_t maxdist       =  10.0;

    MFCT1SelFinal selfinalgh(fHilNameSrc);
    selfinalgh.SetCuts(maxhadronness, 100.0, maxdist);
    selfinalgh.SetHadronnessName(hadRFName);
    selfinalgh.SetName("SelFinalgh");
    MContinue contfinalgh(&selfinalgh);
    contfinalgh.SetName("ContSelFinalgh");

    MFillH fillranfor("MHRanForest");
    fillranfor.SetName("HRanForest");

    MFillH fillhadrf("hadRF[MHHadronness]", hadRFName);
    fillhadrf.SetName("HhadRF");

    MFCT1SelFinal selfinal(fHilNameSrc);
    selfinal.SetCuts(maxhadronness, maxalpha, maxdist);
    selfinal.SetHadronnessName(hadRFName);
    selfinal.SetName("SelFinal");
    MContinue contfinal(&selfinal);
    contfinal.SetName("ContSelFinal");


    MFillH hfill1("MHHillas",    fHilName);
    hfill1.SetName("HHillas");

    MFillH hfill2("MHStarMap",   fHilName);
    hfill2.SetName("HStarMap");

    MFillH hfill3("MHHillasExt",    fHilNameSrc);
    hfill3.SetName("HHillasExt");
    
    MFillH hfill4("MHHillasSrc",   fHilNameSrc);
    hfill4.SetName("HHillasSrc");    

    MFillH hfill5("MHNewImagePar", fImgParName);
    hfill5.SetName("HNewImagePar");

    //*****************************
    // entries in MParList

    pliston.AddToList(&tliston);
    InitBinnings(&pliston);

    pliston.AddToList(fRanForest);
    pliston.AddToList(fRanTree);

    //*****************************
    // entries in MTaskList
    
    tliston.AddToList(&read);

    tliston.AddToList(&rfcalc);
    tliston.AddToList(&fillranfor);
    tliston.AddToList(&fillhadrf);

    tliston.AddToList(&hfill1);
    tliston.AddToList(&hfill2);
    tliston.AddToList(&hfill3);
    tliston.AddToList(&hfill4);
    tliston.AddToList(&hfill5);

    tliston.AddToList(&write);

    tliston.AddToList(&contfinalgh);
    tliston.AddToList(&contfinal);

    //*****************************

    //-------------------------------------------
    // Execute event loop
    //
    MProgressBar bar;
    MEvtLoop evtloop;
    evtloop.SetParList(&pliston);
    evtloop.SetProgressBar(&bar);

    Int_t maxevents = -1;
    if ( !evtloop.Eventloop(maxevents) )
        return;

    tliston.PrintStatistics(0, kTRUE);


    //-------------------------------------------
    // Display the histograms
    //
    pliston.FindObject("MHRanForest")->DrawClone();
    pliston.FindObject("hadRF", "MHHadronness")->DrawClone();

    pliston.FindObject("MHHillas")->DrawClone();
    pliston.FindObject("MHHillasExt")->DrawClone();
    pliston.FindObject("MHHillasSrc")->DrawClone();
    pliston.FindObject("MHNewImagePar")->DrawClone();
    pliston.FindObject("MHStarMap")->DrawClone();

    DeleteBinnings(&pliston);
  }

    gLog << "Macro CT1Analysis : End of Job B_RF_UP" << endl;
    gLog << "=======================================================" << endl;
 }
  //---------------------------------------------------------------------



  //---------------------------------------------------------------------
  // Job C  
  //======

    //  - read ON1 and MC1 data files  
    //    which should have been updated to contain the hadronnesses
    //    for the method of NEAREST NEIGHBORS and for the SUOERCUTS
    //  - produce Neyman-Pearson plots
 
 if (JobC)
 {
    gLog << "=====================================================" << endl;
    gLog << "Macro CT1Analysis : Start of Job C" << endl;

    gLog << "" << endl;
    gLog << "Macro CT1Analysis : JobC = " << JobC  << endl;


    // name of input data file
    TString filenameData = outPath;
    filenameData += "ON";
    filenameData += "3.root";
    gLog << "filenameData = " << filenameData << endl;

    // name of input MC file
    TString filenameMC = outPath;
    filenameMC += "MC";
    filenameMC += "3.root";
    gLog << "filenameMC   = " << filenameMC   << endl;


    //-----------------------------------------------------------------

    MTaskList tliston;
    MParList pliston;


    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");

    //-------------------------------------------
    // create the tasks which should be executed 
    //

    MReadMarsFile read("Events", filenameMC);
    read.AddFile(filenameData);
    read.DisableAutoScheme();


    //.......................................................................
    // names of hadronness containers

    TString hadNNName = "HadNN";
    TString hadSCName = "HadSC";
    TString hadRFName = "HadRF";

    //.......................................................................


    TString fHilName    = "MHillas"; 
    TString fHilNameExt = "MHillasExt"; 
    TString fHilNameSrc = "MHillasSrc"; 
    TString fImgParName = "MNewImagePar"; 

    Float_t maxhadronness =  0.40;
    Float_t maxalpha      =  20.0;
    Float_t maxdist       =  10.0;

    MFCT1SelFinal selfinalgh(fHilNameSrc);
    selfinalgh.SetCuts(maxhadronness, 100.0, maxdist);
    selfinalgh.SetHadronnessName(hadNNName);
    selfinalgh.SetName("SelFinalgh");
    MContinue contfinalgh(&selfinalgh);
    contfinalgh.SetName("ContSelFinalgh");

    MFillH fillhadnn("hadNN[MHHadronness]", hadNNName);
    fillhadnn.SetName("HhadNN");
    MFillH fillhadsc("hadSC[MHHadronness]", hadSCName);
    fillhadsc.SetName("HhadSC");
    MFillH fillhadrf("hadRF[MHHadronness]", hadRFName);
    fillhadrf.SetName("HhadRF");

    MFCT1SelFinal selfinal(fHilNameSrc);
    selfinal.SetCuts(maxhadronness, maxalpha, maxdist);
    selfinal.SetHadronnessName(hadNNName);
    selfinal.SetName("SelFinal");
    MContinue contfinal(&selfinal);
    contfinal.SetName("ContSelFinal");


    MFillH hfill1("MHHillas",    fHilName);
    hfill1.SetName("HHillas");

    MFillH hfill2("MHStarMap",   fHilName);
    hfill2.SetName("HStarMap");

    MFillH hfill3("MHHillasExt",    fHilNameSrc);
    hfill3.SetName("HHillasExt");
    
    MFillH hfill4("MHHillasSrc",   fHilNameSrc);
    hfill4.SetName("HHillasSrc");    

    MFillH hfill5("MHNewImagePar", fImgParName);
    hfill5.SetName("HNewImagePar");


    //*****************************
    // entries in MParList

    pliston.AddToList(&tliston);
    InitBinnings(&pliston);


    //*****************************
    // entries in MTaskList
    
    tliston.AddToList(&read);

    tliston.AddToList(&fillhadnn);
    tliston.AddToList(&fillhadsc);
    tliston.AddToList(&fillhadrf);
   
    tliston.AddToList(&contfinalgh);
    tliston.AddToList(&hfill1);
    tliston.AddToList(&hfill2);
    tliston.AddToList(&hfill3);
    tliston.AddToList(&hfill4);
    tliston.AddToList(&hfill5);

    tliston.AddToList(&contfinal);

    //*****************************

    //-------------------------------------------
    // Execute event loop
    //
    MProgressBar bar;
    MEvtLoop evtloop;
    evtloop.SetParList(&pliston);
    evtloop.SetProgressBar(&bar);

    Int_t maxevents = -1;
    //Int_t maxevents = 35000;
    if ( !evtloop.Eventloop(maxevents) )
        return;

    tliston.PrintStatistics(0, kTRUE);


    //-------------------------------------------
    // Display the histograms
    //

    pliston.FindObject("hadNN", "MHHadronness")->DrawClone();
    pliston.FindObject("hadSC", "MHHadronness")->DrawClone();
    pliston.FindObject("hadRF", "MHHadronness")->DrawClone();

    pliston.FindObject("MHHillas")->DrawClone();
    pliston.FindObject("MHHillasExt")->DrawClone();
    pliston.FindObject("MHHillasSrc")->DrawClone();
    pliston.FindObject("MHNewImagePar")->DrawClone();
    pliston.FindObject("MHStarMap")->DrawClone();

    DeleteBinnings(&pliston);

    gLog << "Macro CT1Analysis : End of Job C" << endl;
    gLog << "===================================================" << endl;
 }


  //---------------------------------------------------------------------
  // Job D
  //======

    //  - select g/h separation method XX
    //  - read ON2 (or MC2) root file 
    //  - apply cuts in hadronness
    //  - make plots


 if (JobD)
 {
    gLog << "=====================================================" << endl;
    gLog << "Macro CT1Analysis : Start of Job D" << endl;

    gLog << "" << endl;
    gLog << "Macro CT1Analysis : JobD = " 
         << JobD  << endl;

    // type of data to be analysed
    TString typeData = "ON";
    //TString typeData = "OFF";
    //TString typeData = "MC";
    gLog << "typeData = " << typeData << endl;

    TString ext      = "3.root";


    //------------------------------
    // selection of g/h separation method
    // and definition of final selections

    //TString XX("NN");
    TString XX("SC");
    //TString XX("RF");
    TString fhadronnessName("Had");
    fhadronnessName += XX;
    gLog << "fhadronnessName = " << fhadronnessName << endl;

    // maximum values of the hadronness, |ALPHA| and DIST
    Float_t maxhadronness   = 0.30;
    Float_t maxalpha        = 20.0;
    Float_t maxdist         = 10.0;
    gLog << "Maximum values of hadronness, |ALPHA| and DIST = "
         << maxhadronness << ",  " << maxalpha << ",  " 
         << maxdist << endl;


    //------------------------------
    // name of data file to be analysed
    TString filenameData(outPath);
    filenameData += typeData;
    filenameData += ext;
    gLog << "filenameData = " << filenameData << endl;



    //*************************************************************************
    //
    // Analyse the data
    //

    MTaskList tliston;
    MParList pliston;

    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");


    TString fHilName    = "MHillas"; 
    TString fHilNameExt = "MHillasExt"; 
    TString fHilNameSrc = "MHillasSrc"; 
    TString fImgParName = "MNewImagePar"; 

    //-------------------------------------------
    // create the tasks which should be executed 
    //

    MReadMarsFile read("Events", filenameData);
    read.DisableAutoScheme();


    //-----------------------------------------------------------------
    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");

    MFCT1SelFinal selfinalgh(fHilNameSrc);
    selfinalgh.SetCuts(maxhadronness, 100.0, maxdist);
    selfinalgh.SetHadronnessName(fhadronnessName);
    selfinalgh.SetName("SelFinalgh");
    MContinue contfinalgh(&selfinalgh);
    contfinalgh.SetName("ContSelFinalgh");

    MFillH fillhadnn("hadNN[MHHadronness]", "HadNN");
    fillhadnn.SetName("HhadNN");
    MFillH fillhadsc("hadSC[MHHadronness]", "HadSC");
    fillhadsc.SetName("HhadSC");
    MFillH fillhadrf("hadRF[MHHadronness]", "HadRF");
    fillhadrf.SetName("HhadRF");


    MFillH hfill1("MHHillas",    fHilName);
    hfill1.SetName("HHillas");

    MFillH hfill2("MHStarMap",   fHilName);
    hfill2.SetName("HStarMap");

    MFillH hfill3("MHHillasExt",   fHilNameSrc);
    hfill3.SetName("HHillasExt");    

    MFillH hfill4("MHHillasSrc",   fHilNameSrc);
    hfill4.SetName("HHillasSrc");    

    MFillH hfill5("MHNewImagePar", fImgParName);
    hfill5.SetName("HNewImagePar");    

    MFCT1SelFinal selfinal(fHilNameSrc);
    selfinal.SetCuts(maxhadronness, maxalpha, maxdist);
    selfinal.SetHadronnessName(fhadronnessName);
    selfinal.SetName("SelFinal");
    MContinue contfinal(&selfinal);
    contfinal.SetName("ContSelFinal");


    //*****************************
    // entries in MParList

    pliston.AddToList(&tliston);
    InitBinnings(&pliston);


    //*****************************
    // entries in MTaskList
    
    tliston.AddToList(&read);

    tliston.AddToList(&contfinalgh);

    tliston.AddToList(&fillhadnn);
    tliston.AddToList(&fillhadsc);
    tliston.AddToList(&fillhadrf);

    tliston.AddToList(&hfill1);
    tliston.AddToList(&hfill2);
    tliston.AddToList(&hfill3);
    tliston.AddToList(&hfill4);
    tliston.AddToList(&hfill5);

    tliston.AddToList(&contfinal);

    //*****************************

    //-------------------------------------------
    // Execute event loop
    //
    MProgressBar bar;
    MEvtLoop evtloop;
    evtloop.SetParList(&pliston);
    evtloop.SetProgressBar(&bar);

    Int_t maxevents = -1;
    //Int_t maxevents = 10000;
    if ( !evtloop.Eventloop(maxevents) )
        return;

    tliston.PrintStatistics(0, kTRUE);


    //-------------------------------------------
    // Display the histograms
    //

    pliston.FindObject("hadNN", "MHHadronness")->DrawClone();
    pliston.FindObject("hadRF", "MHHadronness")->DrawClone();
    pliston.FindObject("hadSC", "MHHadronness")->DrawClone();

    pliston.FindObject("MHHillas")->DrawClone();
    pliston.FindObject("MHHillasExt")->DrawClone();
    pliston.FindObject("MHHillasSrc")->DrawClone();
    pliston.FindObject("MHNewImagePar")->DrawClone();
    pliston.FindObject("MHStarMap")->DrawClone();


    //-------------------------------------------
    // fit alpha distribution to get the number of excess events
    //

    MHHillasSrc* hillasSrc = 
      (MHHillasSrc*)(pliston.FindObject("MHHillasSrc"));
    TH1F* alphaHist = (TH1F*)(hillasSrc->GetHistAlpha());
  
    MHOnSubtraction onsub;
    onsub.Calc(alphaHist, kTRUE, 13.1);
    //-------------------------------------------


    DeleteBinnings(&pliston);

    gLog << "Macro CT1Analysis : End of Job D" << endl;
    gLog << "=======================================================" << endl;
 }
  //---------------------------------------------------------------------




  //---------------------------------------------------------------------
  // Job E_XX
  //=========

    //  - select g/h separation method XX
    //  - read MC_XX2.root file 
    //  - calculate eff. collection area
    //  - read ON_XX2.root file 
    //  - apply final cuts
    //  - calculate flux
    //  - write root file for ON data after final cuts (ON_XX3.root))


 if (JobE_XX)
 {
    gLog << "=====================================================" << endl;
    gLog << "Macro CT1Analysis : Start of Job E_XX" << endl;

    gLog << "" << endl;
    gLog << "Macro CT1Analysis : JobE_XX, WXX = " 
         << JobE_XX  << ",  " << WXX << endl;

    // type of data to be analysed
    TString typeData = "ON";
    //TString typeData = "OFF";
    //TString typeData = "MC";
    gLog << "typeData = " << typeData << endl;

    TString typeMC   = "MC";
    TString ext      = "3.root";
    TString extout   = "4.root";

    //------------------------------
    // selection of g/h separation method
    // and definition of final selections

    //TString XX("NN");
    TString XX("SC");
    //TString XX("RF");
    TString fhadronnessName("Had");
    fhadronnessName += XX;
    gLog << "fhadronnessName = " << fhadronnessName << endl;

    // maximum values of the hadronness, |ALPHA| and DIST
    Float_t maxhadronness   = 0.40;
    Float_t maxalpha        = 20.0;
    Float_t maxdist         = 10.0;
    gLog << "Maximum values of hadronness, |ALPHA| and DIST = "
         << maxhadronness << ",  " << maxalpha << ",  " 
         << maxdist << endl;

    //------------------------------
    // name of MC file to be used for optimizing the energy estimator
    TString filenameOpt(outPath);
    filenameOpt += typeMC;
    filenameOpt += ext; 
    gLog << "filenameOpt = " << filenameOpt << endl;

    //------------------------------
    // name of file containing the parameters of the energy estimator
    TString energyParName(outPath);
    energyParName += "energyest_";
    energyParName += XX;
    energyParName += ".root";
    gLog << "energyParName = " << energyParName << endl;

    //------------------------------
    // name of MC file to be used for calculating the eff. collection areas
    TString filenameArea(outPath);
    filenameArea += typeMC;
    filenameArea += ext; 
    gLog << "filenameArea = " << filenameArea << endl;

    //------------------------------
    // name of file containing the eff. collection areas
    TString collareaName(outPath);
    collareaName += "area_";
    collareaName += XX;
    collareaName += ".root";
    gLog << "collareaName = " << collareaName << endl;

    //------------------------------
    // name of data file to be analysed
    TString filenameData(outPath);
    filenameData += typeData;
    filenameData += ext;
    gLog << "filenameData = " << filenameData << endl;

    //------------------------------
    // name of output data file (after the final cuts)
    TString filenameDataout(outPath);
    filenameDataout += typeData;
    filenameDataout += "_";
    filenameDataout += XX;
    filenameDataout += extout;
    gLog << "filenameDataout = " << filenameDataout << endl;


    //====================================================================
    gLog << "-----------------------------------------------" << endl;
    gLog << "Start calculation of effective collection areas" << endl;
    MParList  parlist;
    MTaskList tasklist;

    //---------------------------------------
    // Setup the tasks to be executed
    //
    MReadMarsFile reader("Events", filenameArea);
    reader.DisableAutoScheme();

    MFCT1SelFinal cuthadrons;
    cuthadrons.SetHadronnessName(fhadronnessName);
    cuthadrons.SetCuts(maxhadronness, maxalpha, maxdist);

    MContinue conthadrons(&cuthadrons);

    //MHMcCT1CollectionArea* collarea = new MHMcCT1CollectionArea();
    //MHMcCT1CollectionArea* collarea;

    MFillH filler("MHMcCT1CollectionArea", "MMcEvt");
    filler.SetName("CollectionArea");

    //********************************
    // entries in MParList

    parlist.AddToList(&tasklist);
    InitBinnings(&parlist);
    //parlist.AddToList(collarea);

    //********************************
    // entries in MTaskList

    tasklist.AddToList(&reader);   
    tasklist.AddToList(&conthadrons);
    tasklist.AddToList(&filler);

    //********************************

    //-----------------------------------------
    // Execute event loop
    //
    MEvtLoop magic;
    magic.SetParList(&parlist);

    MProgressBar bar;
    magic.SetProgressBar(&bar);
    if (!magic.Eventloop())
        return;

    tasklist.PrintStatistics(0, kTRUE);

    // Calculate effective collection areas 
    // and display the histograms
    //
    MHMcCT1CollectionArea *collarea = 
         (MHMcCT1CollectionArea*)parlist.FindObject("MHMcCT1CollectionArea");
    collarea->CalcEfficiency();
    collarea->DrawClone("lego");

    // save binnings for call to CT1EEst
    MBinning *binsE     = (MBinning*)parlist.FindObject("BinningE");
    if (!binsE)
	{
          gLog << "Object 'BinningE' not found in MParList" << endl;
          return;
	}
    MBinning *binsTheta = (MBinning*)parlist.FindObject("BinningTheta");
    if (!binsTheta)
	{
          gLog << "Object 'BinningTheta' not found in MParList" << endl;
          return;
	}


    //---------------------------------------------
    // Write histograms to a file 
    //

    TFile f(collareaName, "RECREATE");
    collarea->GetHist()->Write();
    collarea->GetHAll()->Write();
    collarea->GetHSel()->Write();
    f.Close();

    gLog << "Collection area plots written onto file " << collareaName << endl;

    gLog << "Calculation of effective collection areas done" << endl;
    gLog << "-----------------------------------------------" << endl;    
    //------------------------------------------------------------------


    TString fHilName    = "MHillas"; 
    TString fHilNameExt = "MHillasExt"; 
    TString fHilNameSrc = "MHillasSrc"; 
    TString fImgParName = "MNewImagePar"; 


    //===========================================================
    //
    // Optimization of energy estimator
    //
    gLog << "Macro CT1Analysis.C : calling CT1EEst" << endl;

    TString inpath("");
    TString outpath("");
    Int_t howMany = 2000;
    CT1EEst(inpath,   filenameOpt,   outpath, energyParName, 
            fHilName, fHilNameSrc,   fhadronnessName,
            howMany,  maxhadronness, maxalpha, maxdist,
            binsE, binsTheta);
    gLog << "Macro CT1Analysis.C : returning from CT1EEst" << endl;

    //-----------------------------------------------------------
    //
    // Read in parameters of energy estimator ("MMcEnergyEst")
    //                   and migration matrix ("MHMcEnergyMigration")
    //
    gLog << "================================================================"
         << endl;
    gLog << "Macro CT1Analysis.C : read parameters of energy estimator and migration matrix from file '"
         << energyParName << "'" << endl;
    TFile enparam(energyParName);
    enparam.ls();

    //MMcEnergyEst mcest("MMcEnergyEst"); 
    //mcest.Read("MMcEnergyEst");
    MMcEnergyEst &mcest = *((MMcEnergyEst*)gROOT->FindObject("MMcEnergyEst"));

    gLog << "Parameters of energy estimator were read in" << endl;

    TArrayD parA(5);
    TArrayD parB(7);
    for (Int_t i=0; i<parA.GetSize(); i++)
      parA[i] = mcest.GetCoeff(i);
    for (Int_t i=0; i<parB.GetSize(); i++)
      parB[i] = mcest.GetCoeff( i+parA.GetSize() );

    gLog << "Read in Migration matrix" << endl;   

    //MHMcEnergyMigration mighiston("MHMcEnergyMigration");
    //mighiston.Read("MHMcEnergyMigration");
    MHMcEnergyMigration &mighiston = 
          *((MHMcEnergyMigration*)gROOT->FindObject("MHMcEnergyMigration"));

    gLog << "Migration matrix was read in" << endl;

    //*************************************************************************
    //
    // Analyse the data
    //
    gLog << "============================================================"
         << endl;
    gLog << "Analyse the data" << endl;

    MTaskList tliston;
    MParList pliston;

    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");


    //-------------------------------------------
    // create the tasks which should be executed 
    //

    MReadMarsFile read("Events", filenameData);
    read.DisableAutoScheme();

    //.......................................................................

    if (WXX)
    {
      MWriteRootFile &write = *(new MWriteRootFile(filenameDataout));

      write.AddContainer("MRawRunHeader", "RunHeaders");
      write.AddContainer("MTime",         "Events");
      write.AddContainer("MMcEvt",        "Events");
      write.AddContainer("ThetaOrig",     "Events");
      write.AddContainer("MSrcPosCam",    "Events");
      write.AddContainer("MSigmabar",     "Events");
      write.AddContainer("MHillas",       "Events");
      write.AddContainer("MHillasExt",    "Events");
      write.AddContainer("MHillasSrc",    "Events");
      write.AddContainer("MNewImagePar",  "Events");

      write.AddContainer("HadNN",         "Events");
      write.AddContainer("HadSC",         "Events");
      write.AddContainer("HadRF",         "Events");

      write.AddContainer("MEnergyEst",    "Events");
    }

    //-----------------------------------------------------------------
    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");

    MFCT1SelFinal selfinalgh(fHilNameSrc);
    selfinalgh.SetCuts(maxhadronness, 100.0, maxdist);
    selfinalgh.SetHadronnessName(fhadronnessName);
    selfinalgh.SetName("SelFinalgh");
    MContinue contfinalgh(&selfinalgh);
    contfinalgh.SetName("ContSelFinalgh");

    MFillH fillhadnn("hadNN[MHHadronness]", "HadNN");
    fillhadnn.SetName("HhadNN");
    MFillH fillhadsc("hadSC[MHHadronness]", "HadSC");
    fillhadsc.SetName("HhadSC");
    MFillH fillhadrf("hadRF[MHHadronness]", "HadRF");
    fillhadrf.SetName("HhadRF");

    //---------------------------
    // calculate estimated energy

    MEnergyEstParam eeston(fHilName);
    eeston.Add(fHilNameSrc);

    eeston.SetCoeffA(parA);
    eeston.SetCoeffB(parB);

    //---------------------------
    // calculate estimated energy using Daniel's parameters

    //MEnergyEstParam eeston(fHilName);
    //eeston.Add(fHilNameSrc);

    //---------------------------


    MFillH hfill1("MHHillas",    fHilName);
    hfill1.SetName("HHillas");

    MFillH hfill2("MHStarMap",   fHilName);
    hfill2.SetName("HStarMap");

    MFillH hfill3("MHHillasExt",   fHilNameSrc);
    hfill3.SetName("HHillasExt");    

    MFillH hfill4("MHHillasSrc",   fHilNameSrc);
    hfill4.SetName("HHillasSrc");    

    MFillH hfill5("MHNewImagePar", fImgParName);
    hfill5.SetName("HNewImagePar");    

    MFCT1SelFinal selfinal(fHilNameSrc);
    selfinal.SetCuts(maxhadronness, maxalpha, maxdist);
    selfinal.SetHadronnessName(fhadronnessName);
    selfinal.SetName("SelFinal");
    MContinue contfinal(&selfinal);
    contfinal.SetName("ContSelFinal");


    //*****************************
    // entries in MParList

    pliston.AddToList(&tliston);
    InitBinnings(&pliston);


    //*****************************
    // entries in MTaskList
    
    tliston.AddToList(&read);

    tliston.AddToList(&contfinalgh);

    if (WXX)
      tliston.AddToList(&write);

    tliston.AddToList(&eeston);

    tliston.AddToList(&fillhadnn);
    tliston.AddToList(&fillhadsc);
    tliston.AddToList(&fillhadrf);

    tliston.AddToList(&hfill1);
    tliston.AddToList(&hfill2);
    tliston.AddToList(&hfill3);
    tliston.AddToList(&hfill4);
    tliston.AddToList(&hfill5);

    tliston.AddToList(&contfinal);

    //*****************************

    //-------------------------------------------
    // Execute event loop
    //
    MProgressBar bar;
    MEvtLoop evtloop;
    evtloop.SetParList(&pliston);
    evtloop.SetProgressBar(&bar);

    //Int_t maxevents = -1;
    Int_t maxevents = 10000;
    if ( !evtloop.Eventloop(maxevents) )
        return;

    tliston.PrintStatistics(0, kTRUE);


    //-------------------------------------------
    // Display the histograms
    //

    pliston.FindObject("hadNN", "MHHadronness")->DrawClone();
    pliston.FindObject("hadRF", "MHHadronness")->DrawClone();
    pliston.FindObject("hadSC", "MHHadronness")->DrawClone();

    pliston.FindObject("MHHillas")->DrawClone();
    pliston.FindObject("MHHillasExt")->DrawClone();
    pliston.FindObject("MHHillasSrc")->DrawClone();
    pliston.FindObject("MHNewImagePar")->DrawClone();
    pliston.FindObject("MHStarMap")->DrawClone();

    DeleteBinnings(&pliston);

    gLog << "Macro CT1Analysis : End of Job E_XX" << endl;
    gLog << "=======================================================" << endl;
 }
  //---------------------------------------------------------------------


  //---------------------------------------------------------------------
  // Job F_XX
  //=========

    //  - select g/h separation method XX
    //  - read MC_XX2.root file 
    //  - calculate eff. collection area
    //  - read ON_XX2.root file 
    //  - apply final cuts
    //  - calculate flux
    //  - write root file for ON data after final cuts (ON_XX3.root))


 if (JobF_XX)
 {
    gLog << "=====================================================" << endl;
    gLog << "Macro CT1Analysis : Start of Job F_XX" << endl;

    gLog << "" << endl;
    gLog << "Macro CT1Analysis : JobF_XX, WXX = " 
         << JobF_XX  << ",  " << WFX << endl;

    // type of data to be analysed
    TString typeData = "ON";
    //TString typeData = "OFF";
    //TString typeData = "MC";
    gLog << "typeData = " << typeData << endl;

    TString typeMC   = "MC";
    TString ext      = "3.root";
    TString extout   = "4.root";

    //------------------------------
    // selection of g/h separation method
    // and definition of final selections

    //TString XX("NN");
    TString XX("SC");
    //TString XX("RF");
    TString fhadronnessName("Had");
    fhadronnessName += XX;
    gLog << "fhadronnessName = " << fhadronnessName << endl;

    // maximum values of the hadronness, |ALPHA| and DIST
    Float_t maxhadronness   = 0.40;
    Float_t maxalpha        = 20.0;
    Float_t maxdist         = 10.0;
    gLog << "Maximum values of hadronness, |ALPHA| and DIST = "
         << maxhadronness << ",  " << maxalpha << ",  " 
         << maxdist << endl;

    //------------------------------
    // name of MC file to be used for optimizing the energy estimator
    TString filenameOpt(outPath);
    filenameOpt += typeMC;
    filenameOpt += ext; 
    gLog << "filenameOpt = " << filenameOpt << endl;

    //------------------------------
    // name of file containing the parameters of the energy estimator
    TString energyParName(outPath);
    energyParName += "energyest_";
    energyParName += XX;
    energyParName += ".root";
    gLog << "energyParName = " << energyParName << endl;

    //------------------------------
    // name of MC file to be used for calculating the eff. collection areas
    TString filenameArea(outPath);
    filenameArea += typeMC;
    filenameArea += ext; 
    gLog << "filenameArea = " << filenameArea << endl;

    //------------------------------
    // name of file containing the eff. collection areas
    TString collareaName(outPath);
    collareaName += "area_";
    collareaName += XX;
    collareaName += ".root";
    gLog << "collareaName = " << collareaName << endl;

    //------------------------------
    // name of data file to be analysed
    TString filenameData(outPath);
    filenameData += typeData;
    filenameData += ext;
    gLog << "filenameData = " << filenameData << endl;

    //------------------------------
    // name of output data file (after the final cuts)
    TString filenameDataout(outPath);
    filenameDataout += typeData;
    filenameDataout += "_";
    filenameDataout += XX;
    filenameDataout += extout;
    gLog << "filenameDataout = " << filenameDataout << endl;

    //------------------------------
    // name of file containing histograms for flux calculastion
    TString filenameResults(outPath);
    filenameResults += typeData;
    filenameResults += "Results_";
    filenameResults += XX;
    filenameResults += extout;
    gLog << "filenameResults = " << filenameResults << endl;


    //====================================================================
    gLog << "-----------------------------------------------" << endl;
    gLog << "Start calculation of effective collection areas" << endl;
    MParList  parlist;
    MTaskList tasklist;

    //---------------------------------------
    // Setup the tasks to be executed
    //
    MReadMarsFile reader("Events", filenameArea);
    reader.DisableAutoScheme();

    MFCT1SelFinal cuthadrons;
    cuthadrons.SetHadronnessName(fhadronnessName);
    cuthadrons.SetCuts(maxhadronness, maxalpha, maxdist);

    MContinue conthadrons(&cuthadrons);

    MHMcCT1CollectionArea collarea;
    collarea.SetEaxis(MHMcCT1CollectionArea::kLinear);

    MFillH filler("MHMcCT1CollectionArea", "MMcEvt");
    filler.SetName("CollectionArea");

    //********************************
    // entries in MParList

    parlist.AddToList(&tasklist);
    InitBinnings(&parlist);
    parlist.AddToList(&collarea);

    //********************************
    // entries in MTaskList

    tasklist.AddToList(&reader);   
    tasklist.AddToList(&conthadrons);
    tasklist.AddToList(&filler);

    //********************************

    //-----------------------------------------
    // Execute event loop
    //
    MEvtLoop magic;
    magic.SetParList(&parlist);

    MProgressBar bar;
    magic.SetProgressBar(&bar);
    if (!magic.Eventloop())
        return;

    tasklist.PrintStatistics(0, kTRUE);

    // Calculate effective collection areas 
    // and display the histograms
    //
    //MHMcCT1CollectionArea *collarea = 
    //     (MHMcCT1CollectionArea*)parlist.FindObject("MHMcCT1CollectionArea");
    collarea.CalcEfficiency();
    collarea.DrawClone();

    // save binnings for call to CT1EEst
    MBinning *binsE     = (MBinning*)parlist.FindObject("BinningE");
    if (!binsE)
	{
          gLog << "Object 'BinningE' not found in MParList" << endl;
          return;
	}
    MBinning *binsTheta = (MBinning*)parlist.FindObject("BinningTheta");
    if (!binsTheta)
	{
          gLog << "Object 'BinningTheta' not found in MParList" << endl;
          return;
	}


    //---------------------------------------------
    // Write histograms to a file 
    //

    TFile f(collareaName, "RECREATE");
    collarea.GetHist()->Write();
    collarea.GetHAll()->Write();
    collarea.GetHSel()->Write();
    f.Close();

    gLog << "Collection area plots written onto file " << collareaName << endl;

    gLog << "Calculation of effective collection areas done" << endl;
    gLog << "-----------------------------------------------" << endl;    
    //------------------------------------------------------------------


    TString fHilName    = "MHillas"; 
    TString fHilNameExt = "MHillasExt"; 
    TString fHilNameSrc = "MHillasSrc"; 
    TString fImgParName = "MNewImagePar"; 

  
    //===========================================================
    //
    // Optimization of energy estimator
    //
    gLog << "Macro CT1Analysis.C : calling CT1EEst" << endl;

    TString inpath("");
    TString outpath("");
    Int_t howMany = 2000;
    CT1EEst(inpath,   filenameOpt,   outpath, energyParName, 
            fHilName, fHilNameSrc,   fhadronnessName,
            howMany,  maxhadronness, maxalpha, maxdist,
            binsE, binsTheta);
    gLog << "Macro CT1Analysis.C : returning from CT1EEst" << endl;

    //-----------------------------------------------------------
    //
    // Read in parameters of energy estimator ("MMcEnergyEst")
    //                   and migration matrix ("MHMcEnergyMigration")
    //
    gLog << "================================================================"
         << endl;
    gLog << "Macro CT1Analysis.C : read parameters of energy estimator and migration matrix from file '"
         << energyParName << "'" << endl;
    TFile enparam(energyParName);
    enparam.ls();

    //MMcEnergyEst mcest("MMcEnergyEst"); 
    //mcest.Read("MMcEnergyEst");
    MMcEnergyEst &mcest = *((MMcEnergyEst*)gROOT->FindObject("MMcEnergyEst"));

    gLog << "Parameters of energy estimator were read in" << endl;

    TArrayD parA(mcest.GetNumCoeffA());
    TArrayD parB(mcest.GetNumCoeffB());
    for (Int_t i=0; i<parA.GetSize(); i++)
      parA[i] = mcest.GetCoeff(i);
    for (Int_t i=0; i<parB.GetSize(); i++)
      parB[i] = mcest.GetCoeff( i+parA.GetSize() );

    gLog << "Read in Migration matrix" << endl;   

    //MHMcEnergyMigration mighiston("MHMcEnergyMigration");
    //mighiston.Read("MHMcEnergyMigration");
    MHMcEnergyMigration &mighiston = 
          *((MHMcEnergyMigration*)gROOT->FindObject("MHMcEnergyMigration"));

    gLog << "Migration matrix was read in" << endl;

    //*************************************************************************
    //
    // Analyse the data
    //
    gLog << "============================================================"
         << endl;
    gLog << "Analyse the data" << endl;

    MTaskList tliston;
    MParList pliston;

    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");


    //-------------------------------------------
    // create the tasks which should be executed 
    //

    MReadMarsFile read("Events", filenameData);
    read.DisableAutoScheme();

    //.......................................................................

    if (WFX)
    {
      MWriteRootFile &write = *(new MWriteRootFile(filenameDataout));

      write.AddContainer("MRawRunHeader", "RunHeaders");
      write.AddContainer("MTime",         "Events");
      write.AddContainer("MMcEvt",        "Events");
      write.AddContainer("ThetaOrig",     "Events");
      write.AddContainer("MSrcPosCam",    "Events");
      write.AddContainer("MSigmabar",     "Events");
      write.AddContainer("MHillas",       "Events");
      write.AddContainer("MHillasExt",    "Events");
      write.AddContainer("MHillasSrc",    "Events");
      write.AddContainer("MNewImagePar",  "Events");

      write.AddContainer("HadNN",         "Events");
      write.AddContainer("HadSC",         "Events");
      write.AddContainer("HadRF",         "Events");

      write.AddContainer("MEnergyEst",    "Events");
    }

    //-----------------------------------------------------------------
    // geometry is needed in  MHHillas... classes 
    MGeomCam *fGeom = 
             (MGeomCam*)pliston->FindCreateObj("MGeomCamCT1", "MGeomCam");

    MFCT1SelFinal selfinalgh(fHilNameSrc);
    selfinalgh.SetCuts(maxhadronness, 100.0, maxdist);
    selfinalgh.SetHadronnessName(fhadronnessName);
    selfinalgh.SetName("SelFinalgh");
    MContinue contfinalgh(&selfinalgh);
    contfinalgh.SetName("ContSelFinalgh");

    MFillH fillhadnn("hadNN[MHHadronness]", "HadNN");
    fillhadnn.SetName("HhadNN");
    MFillH fillhadsc("hadSC[MHHadronness]", "HadSC");
    fillhadsc.SetName("HhadSC");
    MFillH fillhadrf("hadRF[MHHadronness]", "HadRF");
    fillhadrf.SetName("HhadRF");

    //---------------------------
    // calculate estimated energy

    //MEnergyEstParam eeston(fHilName);
    //eeston.Add(fHilNameSrc);

    //eeston.SetCoeffA(parA);
    //eeston.SetCoeffB(parB);

    //---------------------------
    // calculate estimated energy using Daniel's parameters

    MEnergyEstParamDanielMkn421 eeston(fHilName);
    eeston.Add(fHilNameSrc);
    //eeston.SetCoeffA(parA);
    //eeston.SetCoeffB(parB);


    //---------------------------


    MFillH hfill1("MHHillas",    fHilName);
    hfill1.SetName("HHillas");

    MFillH hfill2("MHStarMap",   fHilName);
    hfill2.SetName("HStarMap");

    MFillH hfill3("MHHillasExt",   fHilNameSrc);
    hfill3.SetName("HHillasExt");    

    MFillH hfill4("MHHillasSrc",   fHilNameSrc);
    hfill4.SetName("HHillasSrc");    

    MFillH hfill5("MHNewImagePar", fImgParName);
    hfill5.SetName("HNewImagePar");    

    //---------------------------
    // new from Robert

    MFillH hfill6("MHTimeDiffTheta", "MMcEvt");
    hfill6.SetName("HTimeDiffTheta");

    MFillH hfill6a("MHTimeDiffTime", "MMcEvt");
    hfill6a.SetName("HTimeDiffTime");

    MFillH hfill7("MHAlphaEnergyTheta", fHilNameSrc);
    hfill7.SetName("HAlphaEnergyTheta");

    MFillH hfill7a("MHAlphaEnergyTime", fHilNameSrc);
    hfill7a.SetName("HAlphaEnergyTime");

    MFillH hfill7b("MHThetabarTime", fHilNameSrc);
    hfill7b.SetName("HThetabarTime");

    MFillH hfill7c("MHEnergyTime", "MMcEvt");
    hfill7c.SetName("HEnergyTime");


    //---------------------------

    MFCT1SelFinal selfinal(fHilNameSrc);
    selfinal.SetCuts(maxhadronness, maxalpha, maxdist);
    selfinal.SetHadronnessName(fhadronnessName);
    selfinal.SetName("SelFinal");
    MContinue contfinal(&selfinal);
    contfinal.SetName("ContSelFinal");


    //*****************************
    // entries in MParList

    pliston.AddToList(&tliston);
    InitBinnings(&pliston);


    //*****************************
    // entries in MTaskList
    
    tliston.AddToList(&read);

    // robert      
    tliston.AddToList(&hfill6);   //timediff
    tliston.AddToList(&hfill6a);   //timediff

    tliston.AddToList(&contfinalgh);
    tliston.AddToList(&eeston);

    if (WFX)
      tliston.AddToList(&write);

    tliston.AddToList(&fillhadnn);
    tliston.AddToList(&fillhadsc);
    tliston.AddToList(&fillhadrf);

    tliston.AddToList(&hfill1);
    tliston.AddToList(&hfill2);
    tliston.AddToList(&hfill3);
    tliston.AddToList(&hfill4);
    tliston.AddToList(&hfill5);

    //robert
    tliston.AddToList(&hfill7);
    tliston.AddToList(&hfill7a);
    tliston.AddToList(&hfill7b);
    tliston.AddToList(&hfill7c);

    tliston.AddToList(&contfinal);

    //*****************************

    //-------------------------------------------
    // Execute event loop
    //
    MProgressBar bar;
    MEvtLoop evtloop;
    evtloop.SetParList(&pliston);
    evtloop.SetProgressBar(&bar);

    Int_t maxevents = -1;
    //Int_t maxevents = 10000;
    if ( !evtloop.Eventloop(maxevents) )
        return;

    tliston.PrintStatistics(0, kTRUE);


    //-------------------------------------------
    // Display the histograms
    //

    pliston.FindObject("hadNN", "MHHadronness")->DrawClone();
    pliston.FindObject("hadRF", "MHHadronness")->DrawClone();
    pliston.FindObject("hadSC", "MHHadronness")->DrawClone();

    pliston.FindObject("MHHillas")->DrawClone();
    pliston.FindObject("MHHillasExt")->DrawClone();
    pliston.FindObject("MHHillasSrc")->DrawClone();
    pliston.FindObject("MHNewImagePar")->DrawClone();
    pliston.FindObject("MHStarMap")->DrawClone();

    DeleteBinnings(&pliston);


//rwagner write all relevant histograms onto a file

    gLog << "=======================================================" << endl;
    gLog << "Write results onto file '" << filenameResults << "'" << endl;

    TFile outfile(filenameResults,"recreate");

    MHHillasSrc* hillasSrc = 
      (MHHillasSrc*)(pliston->FindObject("MHHillasSrc"));
        TH1F* alphaHist = (TH1F*)(hillasSrc->GetHistAlpha());
    alphaHist->Write();
    
    MHAlphaEnergyTheta* aetH = 
      (MHAlphaEnergyTheta*)(pliston->FindObject("MHAlphaEnergyTheta"));
    TH3D* aetHist = (TH3D*)(aetH->GetHist());
    aetHist->SetName("aetHist");
    aetHist->Write();

    MHAlphaEnergyTime* aetH2 = 
      (MHAlphaEnergyTime*)(pliston->FindObject("MHAlphaEnergyTime"));
    TH3D* aetHist2 = (TH3D*)(aetH2->GetHist());
    aetHist2->SetName("aetimeHist");
//     aetHist2->DrawClone();
    aetHist2->Write();

    MHThetabarTime* tbt = 
      (MHThetabarTime*)(pliston->FindObject("MHThetabarTime"));
    TProfile* tbtHist = (TProfile*)(tbt->GetHist());
    tbtHist->SetName("tbtHist");
    tbtHist->Write();

    MHEnergyTime* ent = 
      (MHEnergyTime*)(pliston->FindObject("MHEnergyTime"));
    TH2D* entHist = (TH2D*)(ent->GetHist());
    entHist->SetName("entHist");
    entHist->Write();
    
    MHTimeDiffTheta *time = (MHTimeDiffTheta*)pliston.FindObject("MHTimeDiffTheta");
    TH2D* timeHist = (TH2D*)(time->GetHist());
    timeHist->SetName("MHTimeDiffTheta");
    timeHist->SetTitle("Time diffs");
    timeHist->Write();

    MHTimeDiffTime *time2 = (MHTimeDiffTime*)pliston.FindObject("MHTimeDiffTime");
    TH2D* timeHist2 = (TH2D*)(time2->GetHist());
    timeHist2->SetName("MHTimeDiffTime");
    timeHist2->SetTitle("Time diffs");
    timeHist2->Write();

//rwagner write also collareas to same file
    collarea->GetHist()->Write();
    collarea->GetHAll()->Write();
    collarea->GetHSel()->Write();
    
//rwagner todo: write alpha_cut, type of g/h sep (RF, SC, NN), type of data
//rwagner (ON/OFF/MC), MJDmin, MJDmax to this file

    outfile.Close();

    gLog << "=======================================================" << endl;


    gLog << "Macro CT1Analysis : End of Job F_XX" << endl;
    gLog << "=======================================================" << endl;
 }
  //---------------------------------------------------------------------

}



























