| 1 | #!/bin/sh
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| 2 | #
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| 3 | # ========================================================================
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| 4 | #
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| 5 | # *
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| 6 | # * This file is part of MARS, the MAGIC Analysis and Reconstruction
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| 7 | # * Software. It is distributed to you in the hope that it can be a useful
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| 8 | # * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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| 9 | # * It is distributed WITHOUT ANY WARRANTY.
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| 10 | # *
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| 11 | # * Permission to use, copy, modify and distribute this software and its
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| 12 | # * documentation for any purpose is hereby granted without fee,
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| 13 | # * provided that the above copyright notice appear in all copies and
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| 14 | # * that both that copyright notice and this permission notice appear
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| 15 | # * in supporting documentation. It is provided "as is" without express
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| 16 | # * or implied warranty.
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| 17 | # *
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| 18 | #
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| 19 | #
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| 20 | # Author(s): Daniela Dorner 05/2006 <mailto:dorner@astro.uni-wuerzburg.de>
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| 21 | #
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| 22 | # Copyright: MAGIC Software Development, 2000-2010
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| 23 | #
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| 24 | #
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| 25 | # ========================================================================
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| 26 | #
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| 27 | # This a script, which launches other scripts (all scripts, that are run
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| 28 | # on primary basis)
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| 29 | #
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| 30 |
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| 31 | source `dirname $0`/sourcefile
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| 32 | printprocesslog "INFO starting $0"
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| 33 |
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| 34 | set -C
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| 35 |
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| 36 | # function to continue in loop and go to next script
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| 37 | function nextscript()
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| 38 | {
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| 39 | echo `date +%F\ %T`" sleeping \$$1 = $2 seconds... " >> $jmscriptlog 2>&1
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| 40 | sleep $2
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| 41 | echo "" >> $jmscriptlog 2>&1
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| 42 | continue
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| 43 | }
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| 44 |
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| 45 | echo "" >> $jmscriptlog 2>&1
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| 46 | echo "" >> $jmscriptlog 2>&1
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| 47 | echo -n `date +%F\ %T`" starting jobmanager for setup "$AUTOMATIONSETUP >> $jmscriptlog 2>&1
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| 48 |
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| 49 | # choose commands according to queueing system (defined in setup)
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| 50 | case $queuesys in
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| 51 | sge) echo " on queuing system 'sun grid engine'" >> $jmscriptlog 2>&1
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| 52 | # (-hard) -l hostname=compute-*
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| 53 | # for qstat this returns the jobs running on that node + all jobs in the queue
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| 54 | alias 'queuesubmit'='/opt/gridengine/bin/lx26-amd64/qsub -b y -v AUTOMATIONSETUP=$AUTOMATIONSETUP -e `echo $runlogpath`/error-`echo $date`.log -o `echo $runlogpath`/log-`echo $date`.log `echo $noderequirementsub` `echo $scriptspath`/`echo ${scripts[$i]}` '
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| 55 | # alias 'queuesubmit'='/opt/gridengine/bin/lx26-amd64/qsub -b y -v AUTOMATIONSETUP=$AUTOMATIONSETUP -e `echo $runlogpath`/error-`echo $date`.log -o `echo $runlogpath`/log-`echo $date`.log `echo $scriptspath`/`echo ${scripts[$i]}` '
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| 56 | # alias 'queuesubmit'='/opt/gridengine/bin/lx26-amd64/qsub -sc runlogpath=`echo $runlogpath` -sc date=`echo $date` -sc scriptspath=`echo $scriptspath` -sc script=`echo ${scripts[$i]}` `echo $scriptspath`/job.sge '
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| 57 | # FIXME: get complete scriptname (including command line option), needed for runstereo
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| 58 | alias 'checkqueue'="/opt/gridengine/bin/lx26-amd64/qstat \`echo \$noderequirementstat\` | awk ' { print \"Owner\"\$4\" \" \$3\"Jobstatus\"\$5 } '"
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| 59 | break
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| 60 | ;;
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| 61 | pbs) echo " on queuing system 'pbs'" >> $jmscriptlog 2>&1
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| 62 | alias 'queuesubmit'='$pbspath/qsub -l walltime=$walltime -l pmem=$pmem -v AUTOMATIONSETUP=$AUTOMATIONSETUP,SOURCEFILEPATH=$SOURCEFILEPATH -e `echo $runlogpath`/error-`echo $date`.log -o `echo $runlogpath`/log-`echo $date`.log `echo $noderequirementsub` `echo $scriptspath`/`echo ${scripts[$i]}` '
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| 63 | alias 'checkqueue'="$pbspath/qstat -a | awk ' { print \"Owner\"\$2\" \" \$4\"Jobstatus\"\$10 } '"
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| 64 | break
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| 65 | ;;
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| 66 | condor) echo " on queuing system 'condor'" >> $jmscriptlog 2>&1
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| 67 | alias 'queuesubmit'='$condorpath/condor_submit -a path=`echo $scriptspath` -a prog=`echo ${scripts[$i]}` -a date=`echo $date` -a dir=`echo $runlogpath` -a automationsetup=$AUTOMATIONSETUP `echo $scriptspath`/run.condor'
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| 68 | alias 'checkqueue'='$condorpath/condor_q -global -format "Owner%s " Owner -format "%s" CMD -format "Jobstatus%s\n" Jobstatus '
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| 69 | break
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| 70 | ;;
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| 71 | *) echo "" >> $jmscriptlog 2>&1
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| 72 | finish >> $jmscriptlog 2>&1
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| 73 | ;;
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| 74 | esac
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| 75 |
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| 76 | echo "" >> $jmscriptlog 2>&1
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| 77 |
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| 78 | prev=$max
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| 79 | user=`whoami`
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| 80 | currentnode=$minnode
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| 81 | numevaluated=0
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| 82 | # endless loop
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| 83 | notcount=0
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| 84 | nothingtodocount=0
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| 85 | nothingtodosleeptime=0
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| 86 | errorsleeptime=$errorsleeptimedefault
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| 87 | while (( $notcount < 100 ))
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| 88 | do
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| 89 | for (( i=0 ; i < ${#scripts[@]} ; i++ ))
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| 90 | do
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| 91 | source `dirname $0`/sourcefile
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| 92 | echo `date +%F\ %T`" Evaluating processing status for script '${scripts[$i]}'" >> $jmscriptlog 2>&1
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| 93 |
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| 94 | # check if there's something to do
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| 95 | step=${scriptscolname[$i]}
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| 96 | getstepinfo
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| 97 | # check if walltime has to be set
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| 98 | if [ "$setwalltime" = "yes" ]
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| 99 | then
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| 100 | walltime=${walltimes[$i]}
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| 101 | fi
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| 102 | # check if memory has to be set
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| 103 | if [ "$setpmem" = "yes" ]
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| 104 | then
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| 105 | pmem=${pmems[$i]}
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| 106 | fi
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| 107 | # check if the script is restricted to one node
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| 108 | # (i.e. where output of previous step(s) is stored)
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| 109 | # this information is taken from the steps.rc file
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| 110 | if [ "$noderestricted" = "yes" ]
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| 111 | then
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| 112 | # get number of next node
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| 113 | if [ $numevaluated -ge $numrestrictedscripts ]
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| 114 | then
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| 115 | currentnode=`echo $currentnode + 1 | bc -l`
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| 116 | numevaluated=1
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| 117 | else
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| 118 | numevaluated=`echo $numevaluated + 1 | bc -l`
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| 119 | fi
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| 120 | if [ $currentnode -gt $maxnode ]
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| 121 | then
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| 122 | currentnode=$minnode
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| 123 | fi
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| 124 | # check if node is excluded
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| 125 | for excludednode in ${excludednodes[@]}
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| 126 | do
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| 127 | if [ $currentnode -eq $excludednode ]
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| 128 | then
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| 129 | echo `date +%F\ %T`" Node compute-0-$currentnode is currently excluded." >> $jmscriptlog 2>&1
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| 130 | continue 2
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| 131 | fi
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| 132 | done
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| 133 | # define requirement for submission
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| 134 | # FIXME: currently only for sge at isdc
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| 135 | echo `date +%F\ %T`" Checking for node $currentnode. " >> $jmscriptlog 2>&1
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| 136 | noderequirementsub=" -hard -l hostname=compute-0-${currentnode}"
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| 137 | noderequirementstat=" -l hostname=compute-0-${currentnode}"
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| 138 | getstatus $currentnode >> $jmscriptlog 2>&1
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| 139 | else
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| 140 | noderequirementsub=""
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| 141 | noderequirementstat=""
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| 142 | getstatus >> $jmscriptlog 2>&1
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| 143 | fi
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| 144 |
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| 145 | # check number of processes to be done
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| 146 | echo `date +%F\ %T`" Database: $numproc ${scripts[$i]} still to be done (incl. idle jobs) [DB/step $db/$step]" >> $jmscriptlog 2>&1
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| 147 | if [ "$numproc" = "0" ]
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| 148 | then
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| 149 | prev=0
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| 150 | nothingtodocount=`expr $nothingtodocount + 1`
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| 151 | if [ $nothingtodocount -lt ${#scripts[@]} ]
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| 152 | then
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| 153 | nextscript 0 0
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| 154 | else
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| 155 | if [ $nothingtodosleeptime -lt $sleeptimelimit ]
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| 156 | then
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| 157 | nothingtodosleeptime=`echo " $nothingtodocount * $sleeptime " | bc`
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| 158 | fi
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| 159 | nextscript nothingtodosleeptime $nothingtodosleeptime
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| 160 | fi
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| 161 | else
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| 162 | nothingtodocount=0
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| 163 | nothingtodosleeptime=0
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| 164 | fi
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| 165 |
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| 166 | # get processes in queue
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| 167 | q=(`checkqueue 2>&1 `)
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| 168 | if echo $q | egrep \(Error\|failed\)
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| 169 | then
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| 170 | echo `date +%F\ %T`" WARN checking query ($queuesys) failed" >> $jmscriptlog 2>&1
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| 171 | printprocesslog "WARN checking query ($queuesys) failed"
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| 172 | echo `date +%F\ %T`" WARN checking query ($queuesys) failed" >> $jmerrorlog
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| 173 | nextscript sleeptime $sleeptime
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| 174 | fi
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| 175 | # FIXME: sge cuts scriptname to 8 digits in qstat
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| 176 | # get processes of user in queue
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| 177 | q1=( `echo ${q[@]} | egrep -o "Owner$user"`)
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| 178 | queued=${#q1[@]}
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| 179 | # get scripts in queue
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| 180 | q2=( `echo ${q[@]} | egrep -o "${scripts[$i]}"`)
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| 181 | queuedscript=${#q2[@]}
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| 182 | # get running scripts
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| 183 | # condor: 2
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| 184 | # sge: r
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| 185 | # pbs: R
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| 186 | q3=( `echo ${q[@]} | egrep -o \("${scripts[$i]}"Jobstatus2\|"${scripts[$i]}"Jobstatusr\|"${scripts[$i]}"JobstatusR\)` )
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| 187 | runningscript=${#q3[@]}
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| 188 | stillinqueue=`echo $queuedscript - $runningscript | bc `
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| 189 |
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| 190 | #get total number of allowed process for current time
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| 191 | hour=`date +%k`
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| 192 | if [ ${pnototal[$hour]} -lt $totalmax ]
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| 193 | then
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| 194 | totalpno=${pnototal[$hour]}
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| 195 | else
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| 196 | totalpno=$totalmax
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| 197 | fi
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| 198 |
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| 199 | #choose array according to the day of the week
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| 200 | dayofweek=`date +%u`
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| 201 | case $dayofweek in
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| 202 | 0 | 6) pnos=( ${pnoswe[@]} ) ;;
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| 203 | *) pnos=( ${pnosweek[@]} ) ;;
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| 204 | esac
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| 205 | # get number of allowed scripts for current time
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| 206 | num=`echo "((( $i + 1 ) * 24 ) + ( $hour + 1 ) ) - 24 - 1 " | bc `
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| 207 | pnoscript=${pnos[$num]}
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| 208 | # if there was nothing to do for previous script, more scripts can be allowed
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| 209 | if [ $prev -eq 0 ]
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| 210 | then
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| 211 | echo `date +%F\ %T`" \$prev=0 => resetting \$pnoscript from $pnoscript to $max [\$max]" >> $jmscriptlog 2>&1
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| 212 | pnoscript=$max
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| 213 | fi
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| 214 | echo `date +%F\ %T`" queue for user '$user': total: $queued queued jobs [allowed \$totalpno = $totalpno]" >> $jmscriptlog 2>&1
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| 215 | echo `date +%F\ %T`" queue for user '$user': ${scripts[$i]}: $queuedscript queued, $runningscript running, $stillinqueue idle [allowed \$pnoscript = $pnoscript]" >> $jmscriptlog 2>&1
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| 216 |
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| 217 | # continue if there are already enough processes or scripts in the queue
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| 218 | if [ "$queued" -ge "$totalpno" ] || [ "$queuedscript" -ge "$pnoscript" ]
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| 219 | then
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| 220 | nextscript sleeptime $sleeptime
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| 221 | fi
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| 222 | # continue if the number of script is the queue is larger (or equal) than the number which still has to be done
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| 223 | if [ $numproc -le $stillinqueue ]
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| 224 | then
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| 225 | echo `date +%F\ %T`" \$numproc ($numproc) < \$stillinqueue ($stillinqueue) " >> $jmscriptlog 2>&1
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| 226 | nextscript sleeptime $sleeptime
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| 227 | fi
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| 228 |
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| 229 | # reset prev
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| 230 | prev=$max
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| 231 |
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| 232 | # submit 1 script to queuing system
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| 233 | date=`date +%Y-%m-%d`
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| 234 | echo `date +%F\ %T`" committing 1 ${scripts[$i]} to $queuesys" >> $jmscriptlog 2>&1
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| 235 | if ! queuesubmit 2>> $jmerrorlog
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| 236 | then
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| 237 | echo `date`" WARN submitting job ($queuesys) failed" >> $jmerrorlog
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| 238 | echo `date +%F\ %T`" WARN $queuesys is not working -> sleeping $errorsleeptime [\$errorsleeptime]" >> $jmscriptlog 2>&1
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| 239 | printprocesslog "WARN submitting ${scripts[$i]} ($queuesys) failed"
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| 240 | if [ $errorsleeptime -lt $sleeptimelimit ]
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| 241 | then
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| 242 | errorsleeptime=`echo " $errorsleeptime + $errorsleeptimedefault " | bc`
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| 243 | fi
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| 244 | nextscript errorsleeptime $errorsleeptime
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| 245 | else
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| 246 | errorsleeptime=$errorsleeptimedefault
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| 247 | fi
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| 248 | nextscript sleeptime $sleeptime
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| 249 | done
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| 250 | done
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| 251 |
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