| 1 | #include <TStyle.h>
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| 2 | #include <TCanvas.h>
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| 3 | #include <TSystem.h>
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| 4 | #include <TF1.h>
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| 5 | #include <TProfile.h>
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| 6 | #include <TProfile2D.h>
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| 7 | #include <TMath.h>
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| 8 | #include <TGraph.h>
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| 9 | #include <TFitResultPtr.h>
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| 10 | #include <TFitResult.h>
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| 11 | #include <TFile.h>
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| 12 |
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| 13 | #include <cstdio>
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| 14 | #include <stdio.h>
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| 15 | #include <stdint.h>
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| 16 |
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| 17 | #include "MH.h"
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| 18 | #include "MArrayI.h"
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| 19 | #include "MLog.h"
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| 20 | #include "MLogManip.h"
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| 21 | #include "MDirIter.h"
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| 22 | #include "MFillH.h"
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| 23 | #include "MEvtLoop.h"
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| 24 | #include "MCamEvent.h"
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| 25 | #include "MHCamEvent.h"
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| 26 | #include "MGeomApply.h"
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| 27 | #include "MTaskList.h"
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| 28 | #include "MParList.h"
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| 29 | #include "MContinue.h"
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| 30 | #include "MBinning.h"
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| 31 | #include "MDrsCalibApply.h"
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| 32 | #include "MDrsCalibration.h"
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| 33 | #include "MRawFitsRead.h"
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| 34 | #include "MBadPixelsCam.h"
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| 35 | #include "MStatusDisplay.h"
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| 36 | #include "MTaskInteractive.h"
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| 37 | #include "MPedestalSubtractedEvt.h"
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| 38 | #include "MHCamera.h"
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| 39 | #include "MGeomCamFACT.h"
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| 40 | #include "MRawRunHeader.h"
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| 41 | #include "MPedestalCam.h"
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| 42 | #include "MPedestalPix.h"
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| 43 | #include "MParameters.h"
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| 44 |
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| 45 | using namespace std;
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| 46 | using namespace TMath;
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| 47 |
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| 48 | // Structure to store the extracted value and the extracted time
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| 49 | struct Single
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| 50 | {
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| 51 | float fSignal;
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| 52 | float fTime;
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| 53 | };
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| 54 |
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| 55 | //Storage class to kKeep a list of the extracted single
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| 56 | class MSingles : public MParContainer, public MCamEvent
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| 57 | {
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| 58 | Int_t fIntegrationWindow;
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| 59 |
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| 60 | vector<vector<Single>> fData;
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| 61 |
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| 62 | public:
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| 63 | MSingles(const char *name=NULL, const char *title=NULL) : fIntegrationWindow(30)
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| 64 | {
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| 65 | fName = name ? name : "MSingles";
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| 66 | fName = title ? title : "Storeage for vector of singles";
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| 67 | }
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| 68 |
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| 69 | void InitSize(const UInt_t i)
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| 70 | {
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| 71 | fData.resize(i);
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| 72 | }
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| 73 |
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| 74 | vector<Single> &operator[](UInt_t i) { return fData[i]; }
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| 75 | vector<Single> &GetVector(UInt_t i) { return fData[i]; }
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| 76 |
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| 77 | UInt_t GetNumPixels() const { return fData.size(); }
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| 78 |
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| 79 | void SetIntegrationWindow(Int_t w) { fIntegrationWindow = w; }
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| 80 | Int_t GetIntegrationWindow() const { return fIntegrationWindow; }
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| 81 |
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| 82 | Bool_t GetPixelContent(Double_t &, Int_t , const MGeomCam &, Int_t) const
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| 83 | {
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| 84 | return kTRUE;
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| 85 | }
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| 86 | void DrawPixelContent(Int_t) const { }
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| 87 |
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| 88 | ClassDef(MSingles, 1)
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| 89 | };
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| 90 |
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| 91 | // Histogram class to extract the baseline
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| 92 | class MHBaseline : public MH
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| 93 | {
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| 94 | TH2F fBaseline;
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| 95 |
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| 96 | MPedestalCam *fPedestal;
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| 97 |
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| 98 | // The baseline is only extracted where also the signal is extracted
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| 99 | // FIXME: Make sure this is consistent with MExtractSingles
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| 100 | UShort_t fSkipStart;
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| 101 | UShort_t fSkipEnd;
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| 102 |
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| 103 | public:
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| 104 | MHBaseline() : fPedestal(0), fSkipStart(20), fSkipEnd(10)
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| 105 | {
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| 106 | fName = "MHBaseline";
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| 107 |
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| 108 | // Setup the histogram
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| 109 | fBaseline.SetName("Baseline");
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| 110 | fBaseline.SetTitle("Median spectrum");
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| 111 | fBaseline.SetXTitle("Pixel [idx]");
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| 112 | fBaseline.SetYTitle("Median baseline [mV]");
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| 113 | fBaseline.SetDirectory(NULL);
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| 114 | }
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| 115 |
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| 116 | Bool_t ReInit(MParList *plist)
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| 117 | {
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| 118 | fPedestal = (MPedestalCam*)plist->FindCreateObj("MPedestalCam");
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| 119 | if (!fPedestal)
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| 120 | return kFALSE;
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| 121 |
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| 122 | const MRawRunHeader *header = (MRawRunHeader*)plist->FindObject("MRawRunHeader");
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| 123 | if (!header)
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| 124 | {
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| 125 | *fLog << err << "MRawRunHeader not found... abort." << endl;
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| 126 | return kFALSE;
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| 127 | }
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| 128 |
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| 129 | // Bin width should be around 1 dac count which is about 0.5mV
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| 130 | MBinning binsx, binsy;
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| 131 | binsx.SetEdges(header->GetNumNormalPixels(), -0.5, header->GetNumNormalPixels()-0.5);
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| 132 | binsy.SetEdges(100, -20.5, 29.5);
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| 133 |
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| 134 | // Setup binnning
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| 135 | MH::SetBinning(fBaseline, binsx, binsy);
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| 136 |
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| 137 | return kTRUE;
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| 138 | }
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| 139 |
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| 140 | // Fill the samples into the histogram
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| 141 | Int_t Fill(const MParContainer *par, const Stat_t)
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| 142 | {
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| 143 | const MPedestalSubtractedEvt *evt = dynamic_cast<const MPedestalSubtractedEvt*>(par);
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| 144 |
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| 145 | const Int_t n = evt->GetNumSamples()-fSkipStart-fSkipEnd;
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| 146 |
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| 147 | // Loop over all pixels
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| 148 | for (int pix=0; pix<evt->GetNumPixels(); pix++)
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| 149 | {
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| 150 | // Get samples for each pixel
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| 151 | const Float_t *ptr = evt->GetSamples(pix);
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| 152 |
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| 153 | // Average two consecutive samples
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| 154 | for (int i=0; i<n; i+=2)
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| 155 | {
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| 156 | const Double_t val = 0.5*ptr[i+fSkipStart]+0.5*ptr[i+1+fSkipStart];
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| 157 | fBaseline.Fill(pix, val);
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| 158 | }
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| 159 | }
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| 160 |
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| 161 | return kTRUE;
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| 162 | }
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| 163 |
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| 164 | // Extract the baseline value from the distrbutions
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| 165 | Bool_t Finalize()
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| 166 | {
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| 167 | if (!fPedestal)
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| 168 | return kTRUE;
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| 169 |
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| 170 | fPedestal->InitSize(fBaseline.GetNbinsX());
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| 171 | fPedestal->SetNumEvents(GetNumExecutions());
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| 172 |
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| 173 | Int_t cnt = 0;
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| 174 | Double_t avg = 0;
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| 175 | Double_t rms = 0;
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| 176 |
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| 177 | // Loop over all 'pixels'
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| 178 | for (int x=0; x<fBaseline.GetNbinsX(); x++)
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| 179 | {
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| 180 | // Get the corresponding slice from the histogram
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| 181 | TH1D *hist = fBaseline.ProjectionY("proj", x+1, x+1);
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| 182 |
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| 183 | // Get the maximum bin
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| 184 | const Int_t bin = hist->GetMaximumBin();
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| 185 |
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| 186 | // Calculate a parabola through this and the surrounding points
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| 187 | // on logarithmic values (that's a gaussian)
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| 188 |
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| 189 | //
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| 190 | // Quadratic interpolation
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| 191 | //
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| 192 | // calculate the parameters of a parabula such that
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| 193 | // y(i) = a + b*x(i) + c*x(i)^2
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| 194 | // y'(i) = b + 2*c*x(i)
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| 195 | //
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| 196 | //
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| 197 |
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| 198 | // -------------------------------------------------------------------------
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| 199 | // a = y2;
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| 200 | // b = (y3-y1)/2;
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| 201 | // c = (y3+y1)/2 - y2;
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| 202 |
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| 203 | const Double_t v1 = hist->GetBinContent(bin-1);
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| 204 | const Double_t v2 = hist->GetBinContent(bin);
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| 205 | const Double_t v3 = hist->GetBinContent(bin+1);
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| 206 | if (v1<=0 || v2<=0 || v3<=0)
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| 207 | continue;
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| 208 |
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| 209 | const Double_t y1 = TMath::Log(v1);
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| 210 | const Double_t y2 = TMath::Log(v2);
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| 211 | const Double_t y3 = TMath::Log(v3);
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| 212 |
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| 213 | //Double_t a = y2;
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| 214 | const Double_t b = (y3-y1)/2;
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| 215 | const Double_t c = (y1+y3)/2 - y2;
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| 216 | if (c>=0)
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| 217 | continue;
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| 218 |
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| 219 | const Double_t w = -1./(2*c);
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| 220 | const Double_t dx = b*w;
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| 221 |
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| 222 | if (dx<-1 || dx>1)
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| 223 | continue;
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| 224 |
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| 225 | // y = exp( - (x-k)^2 / s^2 / 2 )
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| 226 | //
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| 227 | // -2*s^2 * log(y) = x^2 - 2*k*x + k^2
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| 228 | //
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| 229 | // a = (k/s0)^2/2
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| 230 | // b = k/s^2
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| 231 | // c = -1/(2s^2) --> s = sqrt(-1/2c)
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| 232 |
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| 233 | const Double_t binx = hist->GetBinCenter(bin);
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| 234 | const Double_t binw = hist->GetBinWidth(bin);
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| 235 |
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| 236 | //const Double_t p = hist->GetBinCenter(hist->GetMaximumBin());
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| 237 | const Double_t p = binx + dx*binw;
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| 238 |
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| 239 | avg += p;
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| 240 | rms += p*p;
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| 241 |
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| 242 | cnt++;
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| 243 |
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| 244 | // Store baseline and sigma
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| 245 | MPedestalPix &pix = (*fPedestal)[x];
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| 246 |
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| 247 | pix.SetPedestal(p);
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| 248 | pix.SetPedestalRms(TMath::Sqrt(w)*binw);
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| 249 |
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| 250 | delete hist;
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| 251 | }
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| 252 |
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| 253 | avg /= cnt;
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| 254 | rms /= cnt;
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| 255 |
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| 256 | cout << "Baseline(" << cnt << "): " << avg << " +- " << sqrt(rms-avg*avg) << endl;
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| 257 |
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| 258 | return kTRUE;
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| 259 | }
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| 260 |
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| 261 | // Draw histogram
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| 262 | void Draw(Option_t *)
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| 263 | {
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| 264 | TVirtualPad *pad = gPad ? gPad : MakeDefCanvas(this);
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| 265 |
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| 266 | AppendPad("");
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| 267 |
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| 268 | pad->SetBorderMode(0);
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| 269 | pad->SetFrameBorderMode(0);
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| 270 | fBaseline.Draw("colz");
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| 271 | }
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| 272 |
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| 273 |
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| 274 | ClassDef(MHBaseline, 1);
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| 275 | };
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| 276 |
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| 277 | // Histogram class for the signal and time distribution as
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| 278 | // well as the pulse shape
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| 279 | class MHSingles : public MH
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| 280 | {
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| 281 | TH2F fSignal;
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| 282 | TH2F fTime;
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| 283 | TProfile2D fPulse;
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| 284 |
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| 285 | UInt_t fNumEntries;
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| 286 |
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| 287 | MSingles *fSingles; //!
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| 288 | MPedestalSubtractedEvt *fEvent; //!
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| 289 | MBadPixelsCam *fBadPix; //!
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| 290 |
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| 291 | public:
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| 292 | MHSingles() : fNumEntries(0), fSingles(0), fEvent(0)
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| 293 | {
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| 294 | fName = "MHSingles";
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| 295 |
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| 296 | // Setup histograms
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| 297 | fSignal.SetName("Signal");
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| 298 | fSignal.SetTitle("pulse integral spectrum");
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| 299 | fSignal.SetXTitle("pixel [SoftID]");
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| 300 | fSignal.SetYTitle("time [a.u.]");
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| 301 | fSignal.SetDirectory(NULL);
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| 302 |
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| 303 | fTime.SetName("Time");
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| 304 | fTime.SetTitle("arival time spectrum");
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| 305 | fTime.SetXTitle("pixel [SoftID]");
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| 306 | fTime.SetYTitle("time [a.u.]");
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| 307 | fTime.SetDirectory(NULL);
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| 308 |
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| 309 | fPulse.SetName("Pulse");
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| 310 | fPulse.SetTitle("average pulse shape spectrum");
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| 311 | fPulse.SetXTitle("pixel [SoftID]");
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| 312 | fPulse.SetYTitle("time [a.u.]");
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| 313 | fPulse.SetDirectory(NULL);
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| 314 | }
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| 315 |
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| 316 | Bool_t SetupFill(const MParList *plist)
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| 317 | {
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| 318 | fSingles = (MSingles*)plist->FindObject("MSingles");
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| 319 | if (!fSingles)
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| 320 | {
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| 321 | *fLog << err << "MSingles not found... abort." << endl;
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| 322 | return kFALSE;
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| 323 | }
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| 324 |
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| 325 | fEvent = (MPedestalSubtractedEvt*)plist->FindObject("MPedestalSubtractedEvt");
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| 326 | if (!fEvent)
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| 327 | {
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| 328 | *fLog << err << "MPedestalSubtractedEvt not found... abort." << endl;
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| 329 | return kFALSE;
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| 330 | }
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| 331 |
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| 332 | fBadPix = (MBadPixelsCam*)plist->FindObject("MBadPixelsCam");
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| 333 | if (!fBadPix)
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| 334 | {
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| 335 | *fLog << err << "MBadPixelsCam not found... abort." << endl;
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| 336 | return kFALSE;
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| 337 | }
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| 338 |
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| 339 | fNumEntries = 0;
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| 340 |
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| 341 | return kTRUE;
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| 342 | }
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| 343 |
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| 344 | Bool_t ReInit(MParList *plist)
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| 345 | {
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| 346 | const MRawRunHeader *header = (MRawRunHeader*)plist->FindObject("MRawRunHeader");
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| 347 | if (!header)
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| 348 | {
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| 349 | *fLog << err << "MRawRunHeader not found... abort." << endl;
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| 350 | return kFALSE;
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| 351 | }
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| 352 |
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| 353 | // Setup binning
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| 354 | const Int_t w = fSingles->GetIntegrationWindow();
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| 355 |
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| 356 | MBinning binsx, binsy;
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| 357 | binsx.SetEdges(fSingles->GetNumPixels(), -0.5, fSingles->GetNumPixels()-0.5);
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| 358 | binsy.SetEdges(22*w, -10*w, 100*w);
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| 359 |
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| 360 | MH::SetBinning(fSignal, binsx, binsy);
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| 361 |
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| 362 | const UShort_t roi = header->GetNumSamples();
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| 363 |
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| 364 | // Correct for DRS timing!!
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| 365 | MBinning binst(roi, -0.5, roi-0.5);
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| 366 | MH::SetBinning(fTime, binsx, binst);
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| 367 |
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| 368 | MBinning binspy(2*roi, -roi-0.5, roi-0.5);
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| 369 | MH::SetBinning(fPulse, binsx, binspy);
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| 370 |
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| 371 | return kTRUE;
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| 372 | }
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| 373 |
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| 374 | // Fill singles into histograms
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| 375 | Int_t Fill(const MParContainer *, const Stat_t)
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| 376 | {
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| 377 | // Get pointer to samples to fill samples
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| 378 | const Float_t *ptr = fEvent->GetSamples(0);
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| 379 | const Short_t roi = fEvent->GetNumSamples();
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| 380 |
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| 381 | // Loop over all pixels
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| 382 | for (unsigned int i=0; i<fSingles->GetNumPixels(); i++)
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| 383 | {
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| 384 | if ((*fBadPix)[i].IsUnsuitable())
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| 385 | continue;
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| 386 |
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| 387 | // loop over all singles
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| 388 | const vector<Single> &result = fSingles->GetVector(i);
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| 389 |
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| 390 | for (unsigned int j=0; j<result.size(); j++)
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| 391 | {
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| 392 | // Fill signal and time
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| 393 | fSignal.Fill(i, result[j].fSignal);
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| 394 | fTime.Fill (i, result[j].fTime);
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| 395 |
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| 396 | if (!ptr)
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| 397 | continue;
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| 398 |
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| 399 | // Fill pulse shape
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| 400 | const Short_t tm = floor(result[j].fTime);
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| 401 |
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| 402 | for (int s=0; s<roi; s++)
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| 403 | fPulse.Fill(i, s-tm, ptr[s]);
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| 404 | }
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| 405 |
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| 406 | ptr += roi;
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| 407 | }
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| 408 |
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| 409 | fNumEntries++;
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| 410 |
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| 411 | return kTRUE;
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| 412 | }
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| 413 |
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| 414 | // Getter for histograms
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| 415 | const TH2 *GetSignal() const { return &fSignal; }
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| 416 | const TH2 *GetTime() const { return &fTime; }
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| 417 | const TH2 *GetPulse() const { return &fPulse; }
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| 418 |
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| 419 | UInt_t GetNumEntries() const { return fNumEntries; }
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| 420 |
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| 421 | void Draw(Option_t *)
|
|---|
| 422 | {
|
|---|
| 423 | TVirtualPad *pad = gPad ? gPad : MakeDefCanvas(this);
|
|---|
| 424 |
|
|---|
| 425 | AppendPad("");
|
|---|
| 426 |
|
|---|
| 427 | pad->Divide(2,2);
|
|---|
| 428 |
|
|---|
| 429 | pad->cd(1);
|
|---|
| 430 | gPad->SetBorderMode(0);
|
|---|
| 431 | gPad->SetFrameBorderMode(0);
|
|---|
| 432 | fSignal.Draw("colz");
|
|---|
| 433 |
|
|---|
| 434 | pad->cd(2);
|
|---|
| 435 | gPad->SetBorderMode(0);
|
|---|
| 436 | gPad->SetFrameBorderMode(0);
|
|---|
| 437 | fTime.Draw("colz");
|
|---|
| 438 |
|
|---|
| 439 | pad->cd(3);
|
|---|
| 440 | gPad->SetBorderMode(0);
|
|---|
| 441 | gPad->SetFrameBorderMode(0);
|
|---|
| 442 | fPulse.Draw("colz");
|
|---|
| 443 | }
|
|---|
| 444 |
|
|---|
| 445 | void DrawCopy(Option_t *)
|
|---|
| 446 | {
|
|---|
| 447 | TVirtualPad *pad = gPad ? gPad : MakeDefCanvas(this);
|
|---|
| 448 |
|
|---|
| 449 | AppendPad("");
|
|---|
| 450 |
|
|---|
| 451 | pad->Divide(2,2);
|
|---|
| 452 |
|
|---|
| 453 | pad->cd(1);
|
|---|
| 454 | gPad->SetBorderMode(0);
|
|---|
| 455 | gPad->SetFrameBorderMode(0);
|
|---|
| 456 | fSignal.DrawCopy("colz");
|
|---|
| 457 |
|
|---|
| 458 | pad->cd(2);
|
|---|
| 459 | gPad->SetBorderMode(0);
|
|---|
| 460 | gPad->SetFrameBorderMode(0);
|
|---|
| 461 | fTime.DrawCopy("colz");
|
|---|
| 462 |
|
|---|
| 463 | pad->cd(3);
|
|---|
| 464 | gPad->SetBorderMode(0);
|
|---|
| 465 | gPad->SetFrameBorderMode(0);
|
|---|
| 466 | fPulse.DrawCopy("colz");
|
|---|
| 467 | }
|
|---|
| 468 |
|
|---|
| 469 | ClassDef(MHSingles, 1)
|
|---|
| 470 | };
|
|---|
| 471 |
|
|---|
| 472 | // Task to extract the singles
|
|---|
| 473 | class MExtractSingles : public MTask
|
|---|
| 474 | {
|
|---|
| 475 | MSingles *fSingles;
|
|---|
| 476 | MPedestalCam *fPedestal;
|
|---|
| 477 | MPedestalSubtractedEvt *fEvent;
|
|---|
| 478 |
|
|---|
| 479 | // On time for each pixel in samples
|
|---|
| 480 | MArrayI fExtractionRange;
|
|---|
| 481 |
|
|---|
| 482 | // Number of samples for sliding average
|
|---|
| 483 | size_t fNumAverage;
|
|---|
| 484 |
|
|---|
| 485 | // The range in which the singles have to fit in
|
|---|
| 486 | // FIXME: Make sure this is consistent with MHBaseline
|
|---|
| 487 | UInt_t fStartSkip;
|
|---|
| 488 | UInt_t fEndSkip;
|
|---|
| 489 |
|
|---|
| 490 | UInt_t fIntegrationSize;
|
|---|
| 491 | UInt_t fMaxSearchWindow;
|
|---|
| 492 |
|
|---|
| 493 | Int_t fMaxDist;
|
|---|
| 494 | Double_t fThreshold;
|
|---|
| 495 |
|
|---|
| 496 | public:
|
|---|
| 497 | MExtractSingles() : fSingles(0), fPedestal(0), fEvent(0),
|
|---|
| 498 | fExtractionRange(1440),
|
|---|
| 499 | fNumAverage(10), fStartSkip(20), fEndSkip(10),
|
|---|
| 500 | fIntegrationSize(3*10), fMaxSearchWindow(30)
|
|---|
| 501 | {
|
|---|
| 502 | }
|
|---|
| 503 |
|
|---|
| 504 | void SetMaxDist(Int_t m) { fMaxDist = m; }
|
|---|
| 505 | void SetThreshold(Int_t th) { fThreshold = th; }
|
|---|
| 506 |
|
|---|
| 507 | UInt_t GetIntegrationSize() const { return fIntegrationSize; }
|
|---|
| 508 |
|
|---|
| 509 | const MArrayI &GetExtractionRange() const { return fExtractionRange; }
|
|---|
| 510 |
|
|---|
| 511 |
|
|---|
| 512 | Int_t PreProcess(MParList *plist)
|
|---|
| 513 | {
|
|---|
| 514 | fSingles = (MSingles*)plist->FindCreateObj("MSingles");
|
|---|
| 515 | if (!fSingles)
|
|---|
| 516 | return kFALSE;
|
|---|
| 517 |
|
|---|
| 518 | fEvent = (MPedestalSubtractedEvt*)plist->FindObject("MPedestalSubtractedEvt");
|
|---|
| 519 | if (!fEvent)
|
|---|
| 520 | {
|
|---|
| 521 | *fLog << err << "MPedestalSubtractedEvt not found... abort." << endl;
|
|---|
| 522 | return kFALSE;
|
|---|
| 523 | }
|
|---|
| 524 |
|
|---|
| 525 | fPedestal = (MPedestalCam*)plist->FindObject("MPedestalCam");
|
|---|
| 526 | if (!fPedestal)
|
|---|
| 527 | {
|
|---|
| 528 | *fLog << err << "MPedestalCam not found... abort." << endl;
|
|---|
| 529 | return kFALSE;
|
|---|
| 530 | }
|
|---|
| 531 |
|
|---|
| 532 | return kTRUE;
|
|---|
| 533 | }
|
|---|
| 534 |
|
|---|
| 535 | Int_t Process()
|
|---|
| 536 | {
|
|---|
| 537 | const UInt_t roi = fEvent->GetNumSamples();
|
|---|
| 538 |
|
|---|
| 539 | const size_t navg = fNumAverage;
|
|---|
| 540 | const float threshold = fThreshold;
|
|---|
| 541 | const UInt_t start_skip = fStartSkip;
|
|---|
| 542 | const UInt_t end_skip = fEndSkip;
|
|---|
| 543 | const UInt_t integration_size = fIntegrationSize;
|
|---|
| 544 | const UInt_t max_search_window = fMaxSearchWindow;
|
|---|
| 545 | const UInt_t max_dist = fMaxDist;
|
|---|
| 546 |
|
|---|
| 547 | vector<float> val(roi-navg);//result of first sliding average
|
|---|
| 548 | for (int pix=0; pix<fEvent->GetNumPixels(); pix++)
|
|---|
| 549 | {
|
|---|
| 550 | // Total number of samples as 'on time'
|
|---|
| 551 | fExtractionRange[pix] += roi-start_skip-navg-end_skip-integration_size;
|
|---|
| 552 |
|
|---|
| 553 | // Clear singles for this pixel
|
|---|
| 554 | vector<Single> &result = fSingles->GetVector(pix);
|
|---|
| 555 | result.clear();
|
|---|
| 556 |
|
|---|
| 557 | // Get pointer to samples
|
|---|
| 558 | const Float_t *ptr = fEvent->GetSamples(pix);
|
|---|
| 559 |
|
|---|
| 560 | // Get Baseline
|
|---|
| 561 | const Double_t ped = (*fPedestal)[pix].GetPedestal();
|
|---|
| 562 |
|
|---|
| 563 | // Subtract baseline and do a sliding average over
|
|---|
| 564 | // the samples to remove noise (mainly the 200MHz noise)
|
|---|
| 565 | for (size_t i=0; i<roi-navg; i++)
|
|---|
| 566 | {
|
|---|
| 567 | val[i] = 0;
|
|---|
| 568 | for (size_t j=i; j<i+navg; j++)
|
|---|
| 569 | val[i] += ptr[j];
|
|---|
| 570 | val[i] /= navg;
|
|---|
| 571 | val[i] -= ped;
|
|---|
| 572 | }
|
|---|
| 573 |
|
|---|
| 574 | // peak finding via threshold
|
|---|
| 575 | UInt_t imax = roi-navg-end_skip-integration_size;
|
|---|
| 576 | for (UInt_t i=start_skip; i<imax; i++)
|
|---|
| 577 | {
|
|---|
| 578 | //search for threshold crossings
|
|---|
| 579 | if (val[i+0]>threshold ||
|
|---|
| 580 | val[i+4]>threshold ||
|
|---|
| 581 |
|
|---|
| 582 | val[i+5]<threshold ||
|
|---|
| 583 | val[i+9]<threshold)
|
|---|
| 584 | continue;
|
|---|
| 585 |
|
|---|
| 586 | //search for maximum after threshold crossing
|
|---|
| 587 | UInt_t k_max = i+5;
|
|---|
| 588 | for (UInt_t k=i+6; k<i+max_search_window; k++)
|
|---|
| 589 | {
|
|---|
| 590 | if (val[k] > val[k_max])
|
|---|
| 591 | k_max = k;
|
|---|
| 592 | }
|
|---|
| 593 |
|
|---|
| 594 | // Check if the findings make sense
|
|---|
| 595 | if (k_max == i+5 || k_max == i + max_search_window-1)
|
|---|
| 596 | continue;
|
|---|
| 597 |
|
|---|
| 598 | //search for half maximum before maximum
|
|---|
| 599 | UInt_t k_half_max = 0;
|
|---|
| 600 | for (UInt_t k=k_max; k>k_max-25; k--)
|
|---|
| 601 | {
|
|---|
| 602 | if (val[k-1] < val[k_max]/2 &&
|
|---|
| 603 | val[k] >= val[k_max]/2 )
|
|---|
| 604 | {
|
|---|
| 605 | k_half_max = k;
|
|---|
| 606 | break;
|
|---|
| 607 | }
|
|---|
| 608 | }
|
|---|
| 609 | // Check if the finding makes sense
|
|---|
| 610 | if (k_half_max+integration_size > roi-navg-end_skip)
|
|---|
| 611 | continue;
|
|---|
| 612 | if (k_half_max == 0)
|
|---|
| 613 | continue;
|
|---|
| 614 | if (k_max - k_half_max > max_dist)
|
|---|
| 615 | continue;
|
|---|
| 616 |
|
|---|
| 617 | // FIXME: Evaluate arrival time more precisely!!!
|
|---|
| 618 | // FIXME: Get a better integration window
|
|---|
| 619 |
|
|---|
| 620 | // Compile "single"
|
|---|
| 621 | Single single;
|
|---|
| 622 | single.fSignal = 0;
|
|---|
| 623 | single.fTime = k_half_max;
|
|---|
| 624 |
|
|---|
| 625 | // Crossing of the threshold is at 5
|
|---|
| 626 | for (UInt_t j=k_half_max; j<k_half_max+integration_size; j++)
|
|---|
| 627 | single.fSignal += ptr[j];
|
|---|
| 628 |
|
|---|
| 629 | single.fSignal -= integration_size*ped;
|
|---|
| 630 |
|
|---|
| 631 | // Add single to list
|
|---|
| 632 | result.push_back(single);
|
|---|
| 633 |
|
|---|
| 634 | // skip falling edge
|
|---|
| 635 | i += 5+integration_size;
|
|---|
| 636 |
|
|---|
| 637 | // Remove skipped samples from 'on time'
|
|---|
| 638 | fExtractionRange[pix] -= i>imax ? 5+integration_size-(i-imax) : 5+integration_size;
|
|---|
| 639 | }
|
|---|
| 640 | }
|
|---|
| 641 | return kTRUE;
|
|---|
| 642 | }
|
|---|
| 643 | };
|
|---|
| 644 |
|
|---|
| 645 | int extract_singles(
|
|---|
| 646 | Int_t max_dist = 14,
|
|---|
| 647 | Double_t threshold = 5,
|
|---|
| 648 | const char *runfile = "/fact/raw/2012/07/23/20120723_",
|
|---|
| 649 | int firstRunID = 6,
|
|---|
| 650 | int lastRunID = 6,
|
|---|
| 651 | const char *drsfile = "/fact/raw/2012/07/23/20120723_004.drs.fits.gz",
|
|---|
| 652 | const char *outpath = "."
|
|---|
| 653 | )
|
|---|
| 654 | {
|
|---|
| 655 | // ======================================================
|
|---|
| 656 |
|
|---|
| 657 | MDirIter iter;
|
|---|
| 658 |
|
|---|
| 659 | // built outpu filename and path
|
|---|
| 660 | TString outfile = Form("%s/", outpath);
|
|---|
| 661 | outfile += gSystem->BaseName(runfile);
|
|---|
| 662 | outfile += Form("%03d_%03d.root", firstRunID, lastRunID);
|
|---|
| 663 |
|
|---|
| 664 |
|
|---|
| 665 | if (!gSystem->AccessPathName(outfile))
|
|---|
| 666 | return 0;
|
|---|
| 667 |
|
|---|
| 668 | // add input files to directory iterator
|
|---|
| 669 | for (Int_t fileNr = firstRunID; fileNr <= lastRunID; fileNr++)
|
|---|
| 670 | {
|
|---|
| 671 | TString filename = runfile;
|
|---|
| 672 | filename += Form("%03d.fits", fileNr);
|
|---|
| 673 | iter.AddDirectory(gSystem->DirName(runfile), gSystem->BaseName(filename+".fz"));
|
|---|
| 674 | iter.AddDirectory(gSystem->DirName(runfile), gSystem->BaseName(filename+".gz"));
|
|---|
| 675 | }
|
|---|
| 676 |
|
|---|
| 677 | // ======================================================
|
|---|
| 678 |
|
|---|
| 679 | // true: Display correctly mapped pixels in the camera displays
|
|---|
| 680 | // but the value-vs-index plot is in software/spiral indices
|
|---|
| 681 | // false: Display pixels in hardware/linear indices,
|
|---|
| 682 | // but the order is the camera display is distorted
|
|---|
| 683 | bool usemap = true;
|
|---|
| 684 |
|
|---|
| 685 | // map file to use (get that from La Palma!)
|
|---|
| 686 | const char *map = usemap ? "/scratch/fact/FACTmap111030.txt" : NULL;
|
|---|
| 687 |
|
|---|
| 688 | // ------------------------------------------------------
|
|---|
| 689 |
|
|---|
| 690 | Long_t max0 = 0;
|
|---|
| 691 | Long_t max1 = 0;
|
|---|
| 692 |
|
|---|
| 693 | // ======================================================
|
|---|
| 694 |
|
|---|
| 695 | if (map && gSystem->AccessPathName(map, kFileExists))
|
|---|
| 696 | {
|
|---|
| 697 | gLog << "ERROR - Cannot access mapping file '" << map << "'" << endl;
|
|---|
| 698 | return 1;
|
|---|
| 699 | }
|
|---|
| 700 | if (gSystem->AccessPathName(drsfile, kFileExists))
|
|---|
| 701 | {
|
|---|
| 702 | gLog << "ERROR - Cannot access drsfile file '" << drsfile << "'" << endl;
|
|---|
| 703 | return 2;
|
|---|
| 704 | }
|
|---|
| 705 |
|
|---|
| 706 | // --------------------------------------------------------------------------------
|
|---|
| 707 |
|
|---|
| 708 | gLog.Separator("Singles");
|
|---|
| 709 | gLog << "Extract singles with '" << drsfile << "'" << endl;
|
|---|
| 710 | gLog << endl;
|
|---|
| 711 |
|
|---|
| 712 | // ------------------------------------------------------
|
|---|
| 713 |
|
|---|
| 714 | MDrsCalibration drscalib300;
|
|---|
| 715 | if (!drscalib300.ReadFits(drsfile))
|
|---|
| 716 | return 3;
|
|---|
| 717 |
|
|---|
| 718 | // ------------------------------------------------------
|
|---|
| 719 |
|
|---|
| 720 | iter.Sort();
|
|---|
| 721 | iter.Print();
|
|---|
| 722 |
|
|---|
| 723 | TString title;
|
|---|
| 724 | title = iter.Next();
|
|---|
| 725 | title += "; ";
|
|---|
| 726 | title += max1;
|
|---|
| 727 | iter.Reset();
|
|---|
| 728 |
|
|---|
| 729 | // ======================================================
|
|---|
| 730 |
|
|---|
| 731 | MStatusDisplay *d = new MStatusDisplay;
|
|---|
| 732 |
|
|---|
| 733 | MBadPixelsCam badpixels;
|
|---|
| 734 | badpixels.InitSize(1440);
|
|---|
| 735 | badpixels[ 424].SetUnsuitable(MBadPixelsPix::kUnsuitable);
|
|---|
| 736 | badpixels[ 583].SetUnsuitable(MBadPixelsPix::kUnsuitable);
|
|---|
| 737 | badpixels[ 830].SetUnsuitable(MBadPixelsPix::kUnsuitable);
|
|---|
| 738 | badpixels[ 923].SetUnsuitable(MBadPixelsPix::kUnsuitable);
|
|---|
| 739 | badpixels[1208].SetUnsuitable(MBadPixelsPix::kUnsuitable);
|
|---|
| 740 | badpixels[1399].SetUnsuitable(MBadPixelsPix::kUnsuitable);
|
|---|
| 741 |
|
|---|
| 742 | // Twin pixel
|
|---|
| 743 | // 113
|
|---|
| 744 | // 115
|
|---|
| 745 | // 354
|
|---|
| 746 | // 423
|
|---|
| 747 | // 1195
|
|---|
| 748 | // 1393
|
|---|
| 749 |
|
|---|
| 750 | MH::SetPalette();
|
|---|
| 751 |
|
|---|
| 752 | MContinue cont("(MRawEvtHeader.GetTriggerID&0xff00)!=0x100", "SelectCal");
|
|---|
| 753 |
|
|---|
| 754 | MGeomApply apply;
|
|---|
| 755 |
|
|---|
| 756 | MDrsCalibApply drsapply;
|
|---|
| 757 |
|
|---|
| 758 | MRawFitsRead read;
|
|---|
| 759 | read.LoadMap(map);
|
|---|
| 760 | read.AddFiles(iter);
|
|---|
| 761 |
|
|---|
| 762 | // ======================================================
|
|---|
| 763 |
|
|---|
| 764 | gLog << endl;
|
|---|
| 765 | gLog.Separator("Calculating baseline");
|
|---|
| 766 |
|
|---|
| 767 | MTaskList tlist0;
|
|---|
| 768 |
|
|---|
| 769 | MRawRunHeader header;
|
|---|
| 770 | MPedestalCam pedcam;
|
|---|
| 771 |
|
|---|
| 772 | MParList plist;
|
|---|
| 773 | plist.AddToList(&tlist0);
|
|---|
| 774 | plist.AddToList(&drscalib300);
|
|---|
| 775 | plist.AddToList(&header);
|
|---|
| 776 | plist.AddToList(&pedcam);
|
|---|
| 777 |
|
|---|
| 778 | // ------------------ Setup the tasks ---------------
|
|---|
| 779 |
|
|---|
| 780 | MFillH fill0("MHBaseline", "MPedestalSubtractedEvt");
|
|---|
| 781 |
|
|---|
| 782 | drsapply.SetRemoveSpikes(3);
|
|---|
| 783 |
|
|---|
| 784 | // ------------------ Setup eventloop and run analysis ---------------
|
|---|
| 785 |
|
|---|
| 786 | tlist0.AddToList(&read);
|
|---|
| 787 | tlist0.AddToList(&apply);
|
|---|
| 788 | tlist0.AddToList(&drsapply);
|
|---|
| 789 | tlist0.AddToList(&fill0);
|
|---|
| 790 |
|
|---|
| 791 | // ------------------ Setup and run eventloop ---------------
|
|---|
| 792 |
|
|---|
| 793 | MEvtLoop loop0(title);
|
|---|
| 794 | loop0.SetDisplay(d);
|
|---|
| 795 | loop0.SetParList(&plist);
|
|---|
| 796 |
|
|---|
| 797 | if (!loop0.Eventloop(max0))
|
|---|
| 798 | return 4;
|
|---|
| 799 |
|
|---|
| 800 | if (!loop0.GetDisplay())
|
|---|
| 801 | return 5;
|
|---|
| 802 |
|
|---|
| 803 | // ----------------------------------------------------------------
|
|---|
| 804 |
|
|---|
| 805 | MGeomCamFACT fact;
|
|---|
| 806 | MHCamera hped(fact);
|
|---|
| 807 | hped.SetCamContent(pedcam);
|
|---|
| 808 | hped.SetCamError(pedcam, 4);
|
|---|
| 809 | hped.SetAllUsed();
|
|---|
| 810 | MHCamEvent display;
|
|---|
| 811 | display.SetHist(hped);
|
|---|
| 812 |
|
|---|
| 813 | d->AddTab("Baseline");
|
|---|
| 814 | display.Clone()->Draw();
|
|---|
| 815 |
|
|---|
| 816 | // ======================================================
|
|---|
| 817 |
|
|---|
| 818 | gLog << endl;
|
|---|
| 819 | gLog.Separator("Extracting singles");
|
|---|
| 820 |
|
|---|
| 821 | MTaskList tlist1;
|
|---|
| 822 |
|
|---|
| 823 | MSingles singles;
|
|---|
| 824 |
|
|---|
| 825 | plist.Replace(&tlist1);
|
|---|
| 826 | plist.AddToList(&badpixels);
|
|---|
| 827 | plist.AddToList(&singles);
|
|---|
| 828 |
|
|---|
| 829 | // ------------------ Setup the tasks ---------------
|
|---|
| 830 |
|
|---|
| 831 | MExtractSingles extract;
|
|---|
| 832 | extract.SetMaxDist(max_dist);
|
|---|
| 833 | extract.SetThreshold(threshold);
|
|---|
| 834 |
|
|---|
| 835 | MFillH fill("MHSingles");
|
|---|
| 836 |
|
|---|
| 837 | // ------------------ Setup eventloop and run analysis ---------------
|
|---|
| 838 |
|
|---|
| 839 | tlist1.AddToList(&read);
|
|---|
| 840 | tlist1.AddToList(&apply);
|
|---|
| 841 | tlist1.AddToList(&drsapply);
|
|---|
| 842 | tlist1.AddToList(&extract);
|
|---|
| 843 | tlist1.AddToList(&fill);
|
|---|
| 844 |
|
|---|
| 845 | // ------------------ Setup and run eventloop ---------------
|
|---|
| 846 |
|
|---|
| 847 | MEvtLoop loop1(title);
|
|---|
| 848 | loop1.SetDisplay(d);
|
|---|
| 849 | loop1.SetParList(&plist);
|
|---|
| 850 |
|
|---|
| 851 | if (!loop1.Eventloop(max1))
|
|---|
| 852 | return 6;
|
|---|
| 853 |
|
|---|
| 854 | if (!loop1.GetDisplay())
|
|---|
| 855 | return 7;
|
|---|
| 856 |
|
|---|
| 857 | if (fill.GetNumExecutions()==0)
|
|---|
| 858 | return 8;
|
|---|
| 859 |
|
|---|
| 860 | // =============================================================
|
|---|
| 861 |
|
|---|
| 862 | gStyle->SetOptFit(kTRUE);
|
|---|
| 863 |
|
|---|
| 864 | MHSingles* h = (MHSingles*) plist.FindObject("MHSingles");
|
|---|
| 865 | if (!h)
|
|---|
| 866 | return 9;
|
|---|
| 867 |
|
|---|
| 868 | const TH2 *htime = h->GetTime();
|
|---|
| 869 | const TH2 *hpulse = h->GetPulse();
|
|---|
| 870 |
|
|---|
| 871 | d->AddTab("Time");
|
|---|
| 872 | TH1 *ht = htime->ProjectionY();
|
|---|
| 873 | ht->SetYTitle("Counts [a.u.]");
|
|---|
| 874 | ht->Scale(1./1440);
|
|---|
| 875 | ht->Draw();
|
|---|
| 876 |
|
|---|
| 877 | d->AddTab("Pulse");
|
|---|
| 878 | TH1 *hp = hpulse->ProjectionY();
|
|---|
| 879 | hp->SetYTitle("Counts [a.u.]");
|
|---|
| 880 | hp->Scale(1./1440);
|
|---|
| 881 | hp->Draw();
|
|---|
| 882 |
|
|---|
| 883 | d->SaveAs(outfile);
|
|---|
| 884 |
|
|---|
| 885 | TFile f(outfile, "UPDATE");
|
|---|
| 886 |
|
|---|
| 887 | MParameterI par("NumEvents");
|
|---|
| 888 | par.SetVal(fill.GetNumExecutions());
|
|---|
| 889 | par.Write();
|
|---|
| 890 |
|
|---|
| 891 | MParameterI win("IntegrationWindow");
|
|---|
| 892 | win.SetVal(extract.GetIntegrationSize());
|
|---|
| 893 | win.Write();
|
|---|
| 894 |
|
|---|
| 895 | extract.GetExtractionRange().Write("ExtractionRange");
|
|---|
| 896 |
|
|---|
| 897 | if (firstRunID==lastRunID)
|
|---|
| 898 | header.Write();
|
|---|
| 899 |
|
|---|
| 900 | return 0;
|
|---|
| 901 | }
|
|---|