| 1 | #ifndef MARS_MWreitFitsFile
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| 2 | #define MARS_MWreitFitsFile
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| 3 |
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| 4 | #include <list>
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| 5 | #include <vector>
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| 6 | #include <map>
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| 7 |
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| 8 | #ifndef ROOT_TClass
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| 9 | #include <TClass.h>
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| 10 | #endif
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| 11 |
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| 12 | #ifndef MARS_MLogManip
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| 13 | #include "MLogManip.h"
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| 14 | #endif
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| 15 |
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| 16 | #ifndef MARS_MWriteFile
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| 17 | #include "MWriteFile.h"
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| 18 | #endif
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| 19 |
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| 20 | #ifndef MARS_MTopFitsGroup
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| 21 | #include "MTopFitsGroup.h"
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| 22 | #endif
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| 23 |
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| 24 | #ifndef MARS_MFitsArray
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| 25 | #include "MFitsArray.h"
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| 26 | #endif
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| 27 |
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| 28 | #ifndef MARS_MRawRunHeader
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| 29 | #include "MRawRunHeader.h"
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| 30 | #endif
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| 31 |
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| 32 | class MRawRunHeader;
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| 33 |
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| 34 | ///////////////////////////////////////////////////////////////////////////////
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| 35 | // Information of one MParContainer, which data should be written into all or
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| 36 | // just a few columns of one FITS table
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| 37 | class MFitsSubTable
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| 38 | {
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| 39 | // the container, which data should be written to the FITS sub-table.
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| 40 | MParContainer *fContainer;
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| 41 |
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| 42 | // used only if the Container is defined by its name.
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| 43 | // if kTRUE must exist in the MParList of the program
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| 44 | // if kFALSE the container is ignored. if it is not in the
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| 45 | // MParList of the program
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| 46 | Bool_t fMust;
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| 47 |
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| 48 | public:
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| 49 | MFitsSubTable( Bool_t must)
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| 50 | : fContainer(NULL), fMust(must)
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| 51 | {}
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| 52 |
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| 53 | MFitsSubTable(MParContainer * container, Bool_t must)
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| 54 | : fContainer(container), fMust(must)
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| 55 | {}
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| 56 |
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| 57 |
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| 58 | MFitsSubTable(const MFitsSubTable & subTable)
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| 59 | : fContainer(subTable.fContainer), fMust(subTable.fMust)
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| 60 | {}
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| 61 |
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| 62 | Bool_t MustHave() {return fMust;}
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| 63 | MParContainer * GetContainer() {return fContainer;}
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| 64 | void SetContainer(MParContainer * cont)
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| 65 | {fContainer = cont;}
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| 66 |
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| 67 | };
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| 68 |
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| 69 |
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| 70 |
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| 71 | ///////////////////////////////////////////////////////////////////////////////
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| 72 | // A class to write data of MParContainer into FITS files.
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| 73 | class MWriteFitsFile : public MWriteFile
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| 74 | {
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| 75 | private:
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| 76 | // all (global) currently open top FITS groups.
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| 77 | // Note: several instances of MWriteFitsFile can write to the same
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| 78 | // top level FITS group (a top level FITS group corresponds to
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| 79 | // one ROOT file)
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| 80 | static std::map<MUniqueFileId, MTopFitsGroup> fTopFitsGroups;
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| 81 |
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| 82 | // pointer to the top level FITS group of this instance
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| 83 | std::map<MUniqueFileId, MTopFitsGroup>::iterator iTopFitsGroup;
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| 84 |
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| 85 | // the key (TString) of following maps is the FITS table name, which
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| 86 | // corresponds to one TTree
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| 87 |
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| 88 | // all main FITS table. Children tables to store data of
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| 89 | // TClonesArray are not in this map.
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| 90 | //ETIENNE ofits objects cannot be copied. So store pointers instead
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| 91 | std::map<TString, ofits*> fFitsTables;
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| 92 |
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| 93 | // all information needed to write data of TClonesArray to their
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| 94 | // own FITS table. Note: one parent FTIS table may have several
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| 95 | // children tables, each for one TClonesArray.
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| 96 | std::map<TString, std::list<MArrayHelperBase *> > fClHelper;
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| 97 |
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| 98 | // all information about the MParContainer, which data are stored
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| 99 | // in the same FITS table. The key of map<TString, MFitsSubTable>
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| 100 | // is the class name of the MParContainer
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| 101 | std::map<TString, std::map<TString, MFitsSubTable> > fSubTables;
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| 102 |
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| 103 | std::map<TString, std::vector<void*> > fDataPointers;
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| 104 | std::map<TString, std::vector<char> > fTypeChars;
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| 105 | std::map<TString, std::vector<uint32_t> > fColSizes;
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| 106 | std::map<TString, std::vector<uint32_t> > fColWidth;
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| 107 | std::map<TString, bool> fTableObjectCreated;
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| 108 | std::map<TString, bool> fTableHeaderWritten;
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| 109 |
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| 110 | void DeleteArrayHelper();
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| 111 |
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| 112 | // rule to construct an output file-name from the input-filename
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| 113 | TString fRule;
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| 114 |
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| 115 | TString fOpenOption; // RECREATE or NEW
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| 116 | TString fGroupName; // name of top level group
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| 117 | TString fTitle; // title of top level group
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| 118 |
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| 119 | TString fGeometry;
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| 120 |
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| 121 | void OpenTopLevelGroup(const char * fname);
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| 122 | void CloseTopLevelGroup();
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| 123 |
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| 124 | Bool_t InitColumns(const TString & tableName,
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| 125 | const TString & parentVarName,
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| 126 | ofits* fitsTable,
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| 127 | void * baseAdr,
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| 128 | TClass * classDef);
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| 129 | void InitSingleColumn(const TString& tableName,
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| 130 | uint32_t count,
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| 131 | const std::string& typeName,
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| 132 | void* dataPointer,
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| 133 | const std::string& columnName,
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| 134 | const std::string& unit,
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| 135 | const std::string& comment);
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| 136 | void writeOneRow(const TString& tableName);
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| 137 | void InitAttr(const char* attrName,
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| 138 | const char* dataType,
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| 139 | void* var,
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| 140 | const char* unit=NULL,
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| 141 | const char* comment=NULL,
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| 142 | ofits* outFile=NULL);
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| 143 |
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| 144 | // MWrite
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| 145 | Bool_t IsFileOpen() const
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| 146 | {return iTopFitsGroup != fTopFitsGroups.end();}
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| 147 | Bool_t CheckAndWrite();
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| 148 | Bool_t GetContainer(MParList *pList);
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| 149 | const char *GetFileName() const;
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| 150 |
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| 151 | Int_t PreProcess(MParList *pList);
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| 152 | Int_t PostProcess();
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| 153 |
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| 154 | void SetupHeaderKeys(MRawRunHeader &header, const char *geometry);
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| 155 |
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| 156 | public:
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| 157 | //Header keys related stuff
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| 158 | template<typename _T>
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| 159 | std::string GetFitsString(const _T& value)
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| 160 | {
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| 161 | std::ostringstream returnVal;
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| 162 | std::string typeName = typeid(_T).name();
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| 163 | if (typeName == "i" || typeName == "j" || //int
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| 164 | typeName == "s" || typeName == "t" || //short
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| 165 | typeName == "l" || typeName == "m" || //long
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| 166 | typeName == "x" || typeName == "y") //long long
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| 167 | returnVal << value;
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| 168 | if (typeName == "b")
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| 169 | {
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| 170 | if (value) returnVal << "T"; else returnVal << "F";
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| 171 | }
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| 172 | if (typeName == "Ss" || typeName == "PKc" ||
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| 173 | (typeName.size() >= 4 && typeName[0] == 'A' && typeName[typeName.size()-1] == 'c' && typeName[typeName.size()-2] == '_'))
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| 174 | {
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| 175 | returnVal << value;
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| 176 | std::string temp = returnVal.str();
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| 177 | returnVal.str("");
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| 178 | for (std::string::iterator c=temp.begin(); c<temp.end(); c++)
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| 179 | if (*c=='\'')
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| 180 | temp.insert(c++, '\'');
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| 181 | returnVal << "'" << temp << "'";
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| 182 | }
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| 183 | if (returnVal.str() == "")
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| 184 | *fLog << warn << "WARNING: could not construct fits string from \"" << value << "\" typename: " << typeName << std::endl;
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| 185 | return returnVal.str();
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| 186 | }
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| 187 |
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| 188 | template<typename _T>
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| 189 | bool SetHeaderKey(const std::string& key,
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| 190 | const _T& value,
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| 191 | const std::string& comment="")
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| 192 | {
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| 193 | //check if header was already written
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| 194 | for (std::map<TString, bool>::iterator it=fTableHeaderWritten.begin(); it!= fTableHeaderWritten.end(); it++)
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| 195 | if (it->second == true)
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| 196 | return false;
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| 197 | //headers were not written yet. Add one key
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| 198 | std::vector<ofits::Key>::iterator it = fHeaderKeys.begin();
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| 199 | //check if the value had been set beforel
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| 200 | for (;it!=fHeaderKeys.end();it++)
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| 201 | {
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| 202 | if (it->key == key)
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| 203 | {
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| 204 | it->value = GetFitsString(value);
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| 205 | it->comment = comment;
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| 206 | break;
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| 207 | }
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| 208 | }
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| 209 | //did we find the key ?
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| 210 | if (it == fHeaderKeys.end())
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| 211 | {//no ? add it !
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| 212 | ofits::Key temp;
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| 213 | temp.key = key;
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| 214 | temp.value = GetFitsString(value);
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| 215 | temp.comment = comment;
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| 216 | fHeaderKeys.push_back(temp);
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| 217 | }
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| 218 | return true;
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| 219 | }
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| 220 | private:
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| 221 | std::vector<ofits::Key> fHeaderKeys;
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| 222 |
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| 223 | std::string Trim(const std::string &str);
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| 224 |
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| 225 | // MTask
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| 226 | Bool_t ReInit(MParList *pList);
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| 227 |
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| 228 | std::vector<std::string> fVetoedColumns;
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| 229 | std::map<std::string, uint32_t> fBytesPerSamples;
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| 230 |
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| 231 |
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| 232 | public:
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| 233 |
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| 234 | //Veto a type-mapping functions and variables
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| 235 | Bool_t VetoColumn(const std::string& colName);
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| 236 | Bool_t SetBytesPerSample(const std::string& colName, uint32_t numBytes);
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| 237 |
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| 238 | enum FILE_MODE {
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| 239 | kMultiFiles,
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| 240 | kSingleFile
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| 241 | } ;
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| 242 |
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| 243 | MWriteFitsFile(const char *fname,
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| 244 | FILE_MODE fileMode = kMultiFiles,
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| 245 | const Option_t *opt="RECREATE",
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| 246 | const char *name=NULL,
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| 247 | const char *title=NULL);
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| 248 | //Similar contructor to what MWriteRootFiles takes.
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| 249 | //Some of the args are not used: comp as they does not make sense in FITS
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| 250 | MWriteFitsFile(const Int_t comp,
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| 251 | const char* rule,
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| 252 | const Option_t* option="RECREATE",
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| 253 | const char* fTitle="Untitled",
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| 254 | const char* name=NULL,
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| 255 | const char* title=NULL);
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| 256 |
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| 257 | ~MWriteFitsFile();
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| 258 |
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| 259 |
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| 260 | void AddContainer(const char *cName, const char *tName=NULL, Bool_t must=kTRUE, UInt_t max=0);
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| 261 | void AddContainer(MParContainer *cont, const char *tName=NULL, Bool_t must=kTRUE, UInt_t max=0);
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| 262 |
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| 263 |
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| 264 | void AddTree(const char *name, Bool_t force=kTRUE)
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| 265 | {
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| 266 | AddContainer(Form("MReport%s", name), name, force);
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| 267 | AddContainer(Form("MTime%s", name), name, force);
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| 268 | }
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| 269 |
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| 270 | void SetGeometry(const TString &geom) { fGeometry = geom; }
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| 271 |
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| 272 | ClassDef(MWriteFitsFile, 0)
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| 273 | };
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| 274 | //Specializations for float and doubles (because of the precision handling, I could not deal with it in the main function
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| 275 | template<>
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| 276 | std::string MWriteFitsFile::GetFitsString(const double& value);
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| 277 | template<>
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| 278 | std::string MWriteFitsFile::GetFitsString(const float& value);
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| 279 | #endif
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