Changeset 13324 for fact/tools/pyscripts/doc/_build/html
- Timestamp:
- 04/05/12 17:32:54 (13 years ago)
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- fact/tools/pyscripts/doc/_build/html
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fact/tools/pyscripts/doc/_build/html/_sources/getting_started.txt
r13316 r13324 39 39 * pyscript/tools 40 40 * pyscripts/ecamples 41 * py42 41 43 42 the absolute path depends on where you have checked (or will check) out the pyscripts repository … … 47 46 svn co https://fact.isdc.unige.ch/svn/fact/tools/pyscripts/ 48 47 49 4. Create pyfits library48 4. Create pyfits_h.so library 50 49 ======================== 51 FACT data are stored in (gzipped) fits files, but the data files are too large to be read by the default tool:50 FACT data are stored in (gzipped) fits files, but the data files are too large to be read by the existing tools: 52 51 53 `pyfits <http://www.stsci.edu/institute/software_hardware/pyfits>` .52 `pyfits <http://www.stsci.edu/institute/software_hardware/pyfits>` which uses `cfitsio <http://heasarc.gsfc.nasa.gov/fitsio/>`_. 54 53 55 To mitigate this problem a C++ class defined in `fits.h` is used. A simple possibility to create an interface of this C++ class and python is to use the 54 To mitigate this problem a C++ class defined in fits.h [#f1]_ is used. A simple possibility to create an interface of this C++ class is to use ROOT and later to import it using the 55 `pyroot <http://root.cern.ch/drupal/category/package-context/pyroot>`_ module. 56 56 57 `pyroot http://root.cern.ch/drupal/category/package-context/pyroot>` module. 57 got to the directory: pyscripts/pyfact 58 58 59 59 simple:: 60 60 61 [ pceth118] /home/luster/py >root62 ROOT 5.28/00 h (branches/v5-28-00-patches@42209, Feb 13 2012, 23:52:00 on linux)61 [lusterma@isdc-cn02 pyfact]$ root 62 ROOT 5.28/00 (trunk@37585, Dec 14 2010, 15:20:27 on linuxx8664gcc) 63 63 CINT/ROOT C/C++ Interpreter version 5.18.00, July 2, 2010 64 64 Type ? for help. Commands must be C++ statements. 65 65 Enclose multiple statements between { }. 66 66 67 root [0] .L fits.h++ 67 Info in <TUnixSystem::ACLiC>: creating shared library /home /luster/py/./fits_h.so68 Info in <TUnixSystem::ACLiC>: creating shared library /home_nfs/isdc/lusterma/pyscripts/pyfact/./fits_h.so 68 69 root [1] 69 70 71 This might not work for whatenver reason then it should be done like this:: 70 72 73 $rootcint -f my_dict.C -c fits.h izstream.h 74 $g++ -fPIC -c -I$ROOTSYS/include my_dict.C -o my_dict.o 75 $g++ -o fits_h.so -shared my_dict.o 76 77 Now you can check if the reading rawdata is working: 78 79 $ pyfact.py 80 81 this should print some data from a few events 71 82 72 83 5. Run examples … … 93 104 94 105 106 .. rubric:: Footnotes 107 .. [#f1] fits.h (here named pyfits.h) is part of MARS and was written by T.Bretz, it was added to this repository for convienience -
fact/tools/pyscripts/doc/_build/html/classes.html
r13316 r13324 25 25 <link rel="top" title="pyfact v0.1 documentation" href="index.html" /> 26 26 <link rel="next" title="Examples" href="examples.html" /> 27 <link rel="prev" title=" Introduction" href="introduction.html" />27 <link rel="prev" title="Getting Started" href="getting_started.html" /> 28 28 </head> 29 29 <body> … … 38 38 accesskey="N">next</a> |</li> 39 39 <li class="right" > 40 <a href=" introduction.html" title="Introduction"40 <a href="getting_started.html" title="Getting Started" 41 41 accesskey="P">previous</a> |</li> 42 42 <li><a href="index.html">pyfact v0.1 documentation</a> »</li> … … 113 113 114 114 <h4>Previous topic</h4> 115 <p class="topless"><a href=" introduction.html"116 title="previous chapter"> Introduction</a></p>115 <p class="topless"><a href="getting_started.html" 116 title="previous chapter">Getting Started</a></p> 117 117 <h4>Next topic</h4> 118 118 <p class="topless"><a href="examples.html" … … 150 150 >next</a> |</li> 151 151 <li class="right" > 152 <a href=" introduction.html" title="Introduction"152 <a href="getting_started.html" title="Getting Started" 153 153 >previous</a> |</li> 154 154 <li><a href="index.html">pyfact v0.1 documentation</a> »</li> -
fact/tools/pyscripts/doc/_build/html/getting_started.html
r13316 r13324 92 92 <li>pyscript/tools</li> 93 93 <li>pyscripts/ecamples</li> 94 <li>py</li>95 94 </ul> 96 95 </dd> … … 104 103 <p>svn co <a class="reference external" href="https://fact.isdc.unige.ch/svn/fact/tools/pyscripts/">https://fact.isdc.unige.ch/svn/fact/tools/pyscripts/</a></p> 105 104 </div> 106 <div class="section" id="create-pyfits-library"> 107 <h2>4. Create pyfits library<a class="headerlink" href="#create-pyfits-library" title="Permalink to this headline">¶</a></h2> 108 <p>FACT data are stored in (gzipped) fits files, but the data files are too large to be read by the default tool:</p> 109 <p><cite>pyfits <http://www.stsci.edu/institute/software_hardware/pyfits></cite>.</p> 110 <p>To mitigate this problem a C++ class defined in <cite>fits.h</cite> is used. A simple possibility to create an interface of this C++ class and python is to use the</p> 111 <p><cite>pyroot http://root.cern.ch/drupal/category/package-context/pyroot></cite> module.</p> 105 <div class="section" id="create-pyfits-h-so-library"> 106 <h2>4. Create pyfits_h.so library<a class="headerlink" href="#create-pyfits-h-so-library" title="Permalink to this headline">¶</a></h2> 107 <p>FACT data are stored in (gzipped) fits files, but the data files are too large to be read by the existing tools:</p> 108 <p><cite>pyfits <http://www.stsci.edu/institute/software_hardware/pyfits></cite> which uses <a class="reference external" href="http://heasarc.gsfc.nasa.gov/fitsio/">cfitsio</a>.</p> 109 <p>To mitigate this problem a C++ class defined in fits.h <a class="footnote-reference" href="#f1" id="id1">[1]</a> is used. A simple possibility to create an interface of this C++ class is to use ROOT and later to import it using the 110 <a class="reference external" href="http://root.cern.ch/drupal/category/package-context/pyroot">pyroot</a> module.</p> 111 <p>got to the directory: pyscripts/pyfact</p> 112 112 <p>simple:</p> 113 <div class="highlight-python"><pre>[ pceth118] /home/luster/py >root114 ROOT 5.28/00 h (branches/v5-28-00-patches@42209, Feb 13 2012, 23:52:00 on linux)113 <div class="highlight-python"><pre>[lusterma@isdc-cn02 pyfact]$ root 114 ROOT 5.28/00 (trunk@37585, Dec 14 2010, 15:20:27 on linuxx8664gcc) 115 115 CINT/ROOT C/C++ Interpreter version 5.18.00, July 2, 2010 116 116 Type ? for help. Commands must be C++ statements. 117 117 Enclose multiple statements between { }. 118 118 119 root [0] .L fits.h++ 119 Info in <TUnixSystem::ACLiC>: creating shared library /home /luster/py/./fits_h.so120 Info in <TUnixSystem::ACLiC>: creating shared library /home_nfs/isdc/lusterma/pyscripts/pyfact/./fits_h.so 120 121 root [1]</pre> 121 122 </div> 123 <p>This might not work for whatenver reason then it should be done like this:</p> 124 <div class="highlight-python"><pre>$rootcint -f my_dict.C -c fits.h izstream.h 125 $g++ -fPIC -c -I$ROOTSYS/include my_dict.C -o my_dict.o 126 $g++ -o fits_h.so -shared my_dict.o</pre> 127 </div> 128 <p>Now you can check if the reading rawdata is working:</p> 129 <p>$ pyfact.py</p> 130 <p>this should print some data from a few events</p> 122 131 </div> 123 132 <div class="section" id="run-examples"> … … 133 142 <dl class="class"> 134 143 <dt id="pyfact.RawData"> 135 <em class="property">class </em><tt class="descclassname">pyfact.</tt><tt class="descname">RawData</tt><big>(</big><em>data_file_name</em>, <em>calib_file_name</em>, <em>user_action_calib=<function <lambda> at 0xa 818844></em>, <em>baseline_file_name=''</em>, <em>return_dict=None</em><big>)</big><a class="headerlink" href="#pyfact.RawData" title="Permalink to this definition">¶</a></dt>144 <em class="property">class </em><tt class="descclassname">pyfact.</tt><tt class="descname">RawData</tt><big>(</big><em>data_file_name</em>, <em>calib_file_name</em>, <em>user_action_calib=<function <lambda> at 0xab028b4></em>, <em>baseline_file_name=''</em>, <em>return_dict=None</em><big>)</big><a class="headerlink" href="#pyfact.RawData" title="Permalink to this definition">¶</a></dt> 136 145 <dd><p>raw data access and calibration</p> 137 146 <ul class="simple"> … … 269 278 </dd></dl> 270 279 280 <p class="rubric">Footnotes</p> 281 <table class="docutils footnote" frame="void" id="f1" rules="none"> 282 <colgroup><col class="label" /><col /></colgroup> 283 <tbody valign="top"> 284 <tr><td class="label"><a class="fn-backref" href="#id1">[1]</a></td><td>fits.h (here named pyfits.h) is part of MARS and was written by T.Bretz, it was added to this repository for convienience</td></tr> 285 </tbody> 286 </table> 271 287 </div> 272 288 </div> … … 285 301 <li><a class="reference internal" href="#environment-variables">2. Environment variables</a></li> 286 302 <li><a class="reference internal" href="#check-out-the-repository">3. Check out the repository</a></li> 287 <li><a class="reference internal" href="#create-pyfits- library">4. Create pyfitslibrary</a></li>303 <li><a class="reference internal" href="#create-pyfits-h-so-library">4. Create pyfits_h.so library</a></li> 288 304 <li><a class="reference internal" href="#run-examples">5. Run examples</a></li> 289 305 </ul> -
fact/tools/pyscripts/doc/_build/html/index.html
r13316 r13324 59 59 <li class="toctree-l2"><a class="reference internal" href="getting_started.html#environment-variables">2. Environment variables</a></li> 60 60 <li class="toctree-l2"><a class="reference internal" href="getting_started.html#check-out-the-repository">3. Check out the repository</a></li> 61 <li class="toctree-l2"><a class="reference internal" href="getting_started.html#create-pyfits- library">4. Create pyfitslibrary</a></li>61 <li class="toctree-l2"><a class="reference internal" href="getting_started.html#create-pyfits-h-so-library">4. Create pyfits_h.so library</a></li> 62 62 <li class="toctree-l2"><a class="reference internal" href="getting_started.html#run-examples">5. Run examples</a></li> 63 63 </ul> -
fact/tools/pyscripts/doc/_build/html/searchindex.js
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