Ignore:
Timestamp:
04/12/13 11:06:00 (12 years ago)
Author:
Daniela Dorner
Message:
updated fitsdump commands to usage of current FACT++ version
File:
1 edited

Legend:

Unmodified
Added
Removed

  • trunk/DataCheck/Processing/CheckRawData.sh

    r14838 r15297  
    6262#dates=( `find /loc_data/zipraw/ -mindepth 3 -type d | sort | sed -e 's/\/loc_data\/zipraw\///g'` ) #all available dates in /loc_data/zipraw
    6363#dates=( `find /loc_data/aux/ -mindepth 3 -type d | sort | sed -e 's/\/loc_data\/aux\///g'` ) #all available dates in /loc_data/zipraw
     64
     65#dates=( "2013/03/30" )
    6466
    6567# do check for rawfiles of these dates
    … …  
    201203      then
    202204         printprocesslog "WARN "$rawfile2" has "$numfitserrors" fitserror(s). "
    203          fitsdumperrors=`$factpath/fitsdump -h -t Events $file 2>&1 | grep corrupted`
     205         #fitsdumperrors=`$factpath/fitsdump -h -t Events $file 2>&1 | grep corrupted`
     206         fitsdumperrors=`$factpath/fitsdump -h $file 2>&1 | grep corrupted`
    204207         if [ "$fitsdumperrors" != "" ]
    205208         then
    … …  
    230233      then
    231234         # get run and file number from file
    232          runnumberfromfile=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep NIGHT | grep -E -o '20[1-9][0-9][01][0-9][0-3][0-9]'`
    233          filenumberfromfileorig=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep RUNID | grep -E -o '[0-9]{1,3}'`
     235         #runnumberfromfile=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep NIGHT | grep -E -o '20[1-9][0-9][01][0-9][0-3][0-9]'`
     236         runnumberfromfile=`$factpath/fitsdump -h $file 2>/dev/null | grep NIGHT | grep -E -o '20[1-9][0-9][01][0-9][0-3][0-9]'`
     237         #filenumberfromfileorig=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep RUNID | grep -E -o '[0-9]{1,3}'`
     238         filenumberfromfileorig=`$factpath/fitsdump -h $file 2>/dev/null | grep RUNID | grep -E -o '[0-9]{1,3}'`
    234239         if [ "$runnumberfromfile" = "" ] || [ "$filenumberfromfileorig" = "" ]
    235240         then
    … …  
    245250     
    246251         # get checksums from header
    247          checksum=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep CHECKSUM | grep -E -o '[a-zA-Z0-9]{16}'`
     252         #checksum=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep CHECKSUM | grep -E -o '[a-zA-Z0-9]{16}'`
     253         checksum=`$factpath/fitsdump -h $file  2>/dev/null | grep CHECKSUM | grep -E -o '[a-zA-Z0-9]{16}'`
    248254         if [ "$checksum" == "" ]
    249255         then
    250256            printprocesslog "WARN checksum for file "$file" is empty."
    251257         fi
    252          datasum=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep DATASUM | grep -E -o '[0-9]{1,10}'`
     258         #datasum=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep DATASUM | grep -E -o '[0-9]{1,10}'`
     259         datasum=`$factpath/fitsdump -h $file  2>/dev/null | grep DATASUM | grep -E -o '[0-9]{1,10}'`
    253260         if [ "$datasum" == "" ]
    254261         then
    … …  
    262269         drsfile=`echo $file | sed -e 's/fits/drs.fits/'`
    263270         numdrsfiles=`ls $drsfile 2>/dev/null | wc -l`
    264          drscalib=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep DRSCALIB | grep -E -o "['][TF][']" | sed -e "s/'//g"`
     271         #drscalib=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep DRSCALIB | grep -E -o "['][TF][']" | sed -e "s/'//g"`
     272         drscalib=`$factpath/fitsdump -h $file  2>/dev/null | grep DRSCALIB | grep -E -o "[\ ][TF][\ ]" | sed -e "s/\ //g"`
    265273         if [ "$drscalib" == "T" ]
    266274         then
    267             step=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep DRSSTEP | grep -E -o "['][012][']" | sed -e "s/'//g"`
    268             stepfromdrs=`$factpath/fitsdump -h -t Events $drsfile  2>/dev/null | grep STEP | grep -E -o "['][012][']" | sed -e "s/'//g"`
     275            #step=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep DRSSTEP | grep -E -o "['][012][']" | sed -e "s/'//g"`
     276            step=`$factpath/fitsdump -h $file  2>/dev/null | grep DRSSTEP | grep -E -o "[\ ][012][\ ]" | sed -e "s/\ //g"`
     277            #stepfromdrs=`$factpath/fitsdump -h -t Events $drsfile  2>/dev/null | grep STEP | grep -E -o "['][012][']" | sed -e "s/'//g"`
     278            stepfromdrs=`$factpath/fitsdump -h $drsfile  2>/dev/null | grep STEP | grep -E -o "[\ ][012][\ ]?" | sed -e "s/\ //g"`
    269279            if [ "$stepfromdrs" != "$step" ]
    270280            then
    … …  
    290300            fi
    291301         fi
     302         #echo $numdrsfiles" "$stepfromdrs" "$step" "$drscalib" ("$file")"
    292303         
    293304         # get other variables from header
    294          runtype=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z0-9._-]+[']" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
     305         #runtype=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z0-9._-]+[']" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
     306         runtype=`$factpath/fitsdump -h $file  2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z0-9._-]+[']" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
    295307         #echo "runtype for file "$file": "$runtype
    296          roi=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep NROI | grep -v NROITM | grep -E -o '[0-9]{1,4}'`
    297          roitm=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep NROITM | grep -E -o '[0-9]{1,4}'`
    298          numevents=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep Events | grep -E -o '[0-9]+'`
    299          numphys=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRG ' | grep -E -o '[0-9]+'`
    300          numext1=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGEXT1' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
    301          numext2=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGEXT2' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
    302          numelp=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGLPE' | grep -E -o '[0-9]+'`
    303          numilp=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGLPI' | grep -E -o '[0-9]+'`
    304          numoth=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGMISC' | grep -E -o '[0-9]+'`
    305          numped=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGPED' | grep -E -o '[0-9]+'`
    306          numtime=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGTIM' | grep -E -o '[0-9]+'`
    307          compiled=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'COMPILED' | grep -E -o "['][a-zA-Z]+[ ][ 12][0-9][ ]20[0-9][0-9][ ][0-2][0-9]:[0-5][0-9]:[0-5][0-9][']" | sed -e "s/'//g"`
     308         #roi=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep NROI | grep -v NROITM | grep -E -o '[0-9]{1,4}'`
     309         roi=`$factpath/fitsdump -h $file  2>/dev/null | grep NROI | grep -v NROITM | grep -E -o '[0-9]{1,4}'`
     310         #roitm=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep NROITM | grep -E -o '[0-9]{1,4}'`
     311         roitm=`$factpath/fitsdump -h $file  2>/dev/null | grep NROITM | grep -E -o '[0-9]{1,4}'`
     312         #numevents=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep Events | grep -E -o '[0-9]+'`
     313         numevents=`$factpath/fitsdump -h $file  2>/dev/null | grep Events | grep -E -o '[0-9]+'`
     314         #numphys=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRG ' | grep -E -o '[0-9]+'`
     315         numphys=`$factpath/fitsdump -h $file  2>/dev/null | grep 'NTRG ' | grep -E -o '[0-9]+'`
     316         #numext1=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGEXT1' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
     317         numext1=`$factpath/fitsdump -h $file  2>/dev/null | grep 'NTRGEXT1' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
     318         #numext2=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGEXT2' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
     319         numext2=`$factpath/fitsdump -h $file  2>/dev/null | grep 'NTRGEXT2' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
     320         #numelp=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGLPE' | grep -E -o '[0-9]+'`
     321         numelp=`$factpath/fitsdump -h $file  2>/dev/null | grep 'NTRGLPE' | grep -E -o '[0-9]+'`
     322         #numilp=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGLPI' | grep -E -o '[0-9]+'`
     323         numilp=`$factpath/fitsdump -h $file  2>/dev/null | grep 'NTRGLPI' | grep -E -o '[0-9]+'`
     324         #numoth=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGMISC' | grep -E -o '[0-9]+'`
     325         numoth=`$factpath/fitsdump -h $file  2>/dev/null | grep 'NTRGMISC' | grep -E -o '[0-9]+'`
     326         #numped=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGPED' | grep -E -o '[0-9]+'`
     327         numped=`$factpath/fitsdump -h $file  2>/dev/null | grep 'NTRGPED' | grep -E -o '[0-9]+'`
     328         #numtime=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'NTRGTIM' | grep -E -o '[0-9]+'`
     329         numtime=`$factpath/fitsdump -h $file  2>/dev/null | grep 'NTRGTIM' | grep -E -o '[0-9]+'`
     330         #compiled=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'COMPILED' | grep -E -o "['][a-zA-Z]+[ ][ 12][0-9][ ]20[0-9][0-9][ ][0-2][0-9]:[0-5][0-9]:[0-5][0-9][']" | sed -e "s/'//g"`
     331         compiled=`$factpath/fitsdump -h $file  2>/dev/null | grep 'COMPILED' | grep -E -o "['][a-zA-Z]+[ ][ 12][0-9][ ]20[0-9][0-9][ ][0-2][0-9]:[0-5][0-9]:[0-5][0-9][']" | sed -e "s/'//g"`
    308332         if ! [ "$compiled" == "" ]
    309333         then
    … …  
    312336            compiletime=
    313337         fi
    314          revnum=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'REVISION' | grep -E -o "['][0-9]+[:]?[0-9]*[MSP]*[']" | sed -e "s/'//g"`
     338         #revnum=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep 'REVISION' | grep -E -o "['][0-9]+[:]?[0-9]*[MSP]*[']" | sed -e "s/'//g"`
     339         revnum=`$factpath/fitsdump -h $file  2>/dev/null | grep 'REVISION' | grep -E -o "['][0-9]+[:]?[0-9]*[MSP]*[']" | sed -e "s/'//g"`
    315340         # in newest data start time is in DATE-OBS
    316341         # in older data start time is in TSTART
    317342         # in the beginning TSTART was empty
    318          runstart=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep DATE-OBS | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
    319          runstart2=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep TSTART | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
     343         #runstart=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep DATE-OBS | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
     344         runstart=`$factpath/fitsdump -h $file  2>/dev/null | grep DATE-OBS | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
     345         #runstart2=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep TSTART | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
     346         runstart2=`$factpath/fitsdump -h $file  2>/dev/null | grep TSTART | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
    320347         if [ "$runstart" == ""  ]
    321348         then
    322349            if [ "$runstart2" == ""  ]
    323350            then
    324                runstart=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep DATE | grep -v 'DATE-' | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
     351               #runstart=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep DATE | grep -v 'DATE-' | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
     352               runstart=`$factpath/fitsdump -h $file  2>/dev/null | grep DATE | grep -v 'DATE-' | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
    325353            else
    326354               runstart=$runstart2
    … …  
    330358         # in older data start time is in TSTOP
    331359         # in the beginning TSTOP was empty
    332          runstop=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep DATE-END | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
    333          runstop2=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep TSTOP | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
     360         #runstop=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep DATE-END | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
     361         runstop=`$factpath/fitsdump -h $file  2>/dev/null | grep DATE-END | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
     362         #runstop2=`$factpath/fitsdump -h -t Events $file  2>/dev/null | grep TSTOP | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
     363         runstop2=`$factpath/fitsdump -h $file  2>/dev/null | grep TSTOP | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
    334364         if [ "$runstop" == ""  ]
    335365         then
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