Index: /branches/Mars_McMismatchStudy/qsub/FACT.qsub_gan_data.sh
===================================================================
--- /branches/Mars_McMismatchStudy/qsub/FACT.qsub_gan_data.sh	(revision 17983)
+++ /branches/Mars_McMismatchStudy/qsub/FACT.qsub_gan_data.sh	(revision 17984)
@@ -8,5 +8,7 @@
 
 INFILE=$NAME.list
-OUTFILE="/home/guest/ghughes/FACT/Mars_McMismatchStudy/OUTPUT/ganymed/"$NAME"_gan.root"
+OUTDIR=$MARSSYS"/OUTPUT/ganymed/"
+mkdir -p $OUTDIR
+OUTFILE=$OUTDIR"/"$NAME"_gan.root"
 
 root -b -q fact/analysis/ganymed.C\(\"$INFILE\",\"$OUTFILE\",5.5755,22.0144\)
Index: /branches/Mars_McMismatchStudy/qsub/FACT.qsub_star_data.sh
===================================================================
--- /branches/Mars_McMismatchStudy/qsub/FACT.qsub_star_data.sh	(revision 17983)
+++ /branches/Mars_McMismatchStudy/qsub/FACT.qsub_star_data.sh	(revision 17984)
@@ -13,9 +13,9 @@
 SEQDIR="/scratch/fact/sequences/"$YEAR"/"$MONTH"/"$DAY"/"
 INDIR="/scratch/fact/data.2013.05.11/callisto/"$YEAR"/"$MONTH"/"$DAY"/"
-OUTDIR="/home/guest/ghughes/FACT/Mars_McMismatchStudy/OUTPUT/star/"$DATE"/"
+OUTDIR=$MARSSYS"/OUTPUT/star/"$DATE"/"
 
-$TFILE=$MARSSYS"/"$DATE".tempfile"
+TFILE=${MARSSYS}"/"$DATE".tempfile"
 
-ls $SEQDIR/$DATE_???.seq > $TFILE
+ls $SEQDIR/${DATE}_???.seq > $TFILE
 
 while read LINE
Index: /branches/Mars_McMismatchStudy/qsub/FACT.sub_gan_data.sh
===================================================================
--- /branches/Mars_McMismatchStudy/qsub/FACT.sub_gan_data.sh	(revision 17983)
+++ /branches/Mars_McMismatchStudy/qsub/FACT.sub_gan_data.sh	(revision 17984)
@@ -19,5 +19,5 @@
 do
 
-  NAME=`echo $LINE | gawk '{print $2}' | sed s/.root//g`
+  NAME=`echo $LINE | gawk '{print $2}' | grep root | sed s/.root//g`
   echo $LINE >  $NAME.list
 
Index: /branches/Mars_McMismatchStudy/qsub/FACT.sub_star_data.sh
===================================================================
--- /branches/Mars_McMismatchStudy/qsub/FACT.sub_star_data.sh	(revision 17983)
+++ /branches/Mars_McMismatchStudy/qsub/FACT.sub_star_data.sh	(revision 17984)
@@ -36,5 +36,6 @@
 
   ##qsub -q fact_medium -b yes -o $QSUBOUT -e $QSUBERR $QSUB
-  qsub -q test -b yes -o $QSUBOUT -e $QSUBERR $QSUB
+  ##qsub -q test -b yes -o $QSUBOUT -e $QSUBERR $QSUB
+  qsub -b yes -o $QSUBOUT -e $QSUBERR $QSUB
 
 done <$INFILE