Index: branches/Mars_McMismatchStudy/qsub/README
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+In the Mars_McMismatchStudy branch I have created a set of scripts for sending jobs to the ISDC batch systemi (see below for full list).
+All of the scripts follow the same style. They are comprised of two files.
+
+FACT.sub_PROGRAM_TYPE.sh which is exicuatable and the one you run.
+FACT.qsub_PROGRAM_TYPE.sh which is the template for the script that runs on the batch machines.
+
+PROGRAM = star, calisto, ...
+TYPE = data or mc
+
+to find the options on how to run any of the scripts run it with no options:
+
+
+------
+> ./FACT.sub_star_data.sh
+
+FACT.sub_star_data.sh <runlist>
+
+<runlist> should be in the form YEAR MONTH DAY eg:
+2013 10 15
+------
+
+An example run list for star is provided in the form of: 
+Crab.star
+
+The sub script crates a job in the queue directory for each night on the list.
+Each job then runs over the sequence files for each day.
+To find the command and how it is run take a look inside the qsub file. 
+For example star is run, in the script, as follows:
+
+  root -b -q fact/analysis/star.C\(\"$SEQFILE\",4,2.5,\"$INDIR\",\"$OUTDIR\"\)
+
+The output all goes to a directory called something like:
+  OUTDIR=$MARSSYS/OUTPUT/star/$DATE
+which be created if it does not exist.
+
+Things to do:
+
+The MC chain has not been tested.
+The files created by callisto are too large to do a large data set. What might be more
+useful for full production in to combine the callisto and star scripts. The callisto 
+output can be created and removed on the fly. 
+
+Give it a try and feel free to change/edit what doesn't work. 
+
+
+Full list:
+
+Crab.star
+Crab.ganymed
+
+FACT.qsub_call_mc.sh
+FACT.qsub_ceres_mc.sh
+FACT.qsub_gan_data.sh
+FACT.qsub_gan_mc.sh
+FACT.qsub_ped_mc.sh
+FACT.qsub_star_data.sh
+FACT.qsub_star_mc.sh
+FACT.sub_call_mc.sh
+FACT.sub_ceres_mc.sh
+FACT.sub_gan_data.sh
+FACT.sub_gan_mc.sh
+FACT.sub_ped_mc.sh
+FACT.sub_star_data.sh
+FACT.sub_star_mc.sh
+