Index: trunk/MagicSoft/Mars/manalysis/AnalysisLinkDef.h
===================================================================
--- trunk/MagicSoft/Mars/manalysis/AnalysisLinkDef.h	(revision 2662)
+++ trunk/MagicSoft/Mars/manalysis/AnalysisLinkDef.h	(revision 2663)
@@ -48,4 +48,5 @@
 #pragma link C++ class MCT1PadSchweizer+;
 #pragma link C++ class MCT1PadONOFF+;
+#pragma link C++ class MPadONOFF+;
 
 #pragma link C++ class MCT1PointingCorrCalc+;
@@ -60,4 +61,7 @@
 #pragma link C++ class MCT1SupercutsCalc+;
 #pragma link C++ class MCT1FindSupercuts+;
+#pragma link C++ class MSupercuts+;
+#pragma link C++ class MSupercutsCalc+;
+#pragma link C++ class MFindSupercuts+;
 #pragma link C++ class MMinuitInterface+;
 #pragma link C++ class MFiltercutsCalc+;
@@ -68,4 +72,5 @@
 #pragma link C++ class MCalibrationCam+;
 #pragma link C++ class MCalibrationCalc+;
+#pragma link C++ class MPedestalWorkaround+;
 
 #pragma link C++ class MExtractedSignalCam+;
Index: trunk/MagicSoft/Mars/manalysis/MFindSupercuts.cc
===================================================================
--- trunk/MagicSoft/Mars/manalysis/MFindSupercuts.cc	(revision 2663)
+++ trunk/MagicSoft/Mars/manalysis/MFindSupercuts.cc	(revision 2663)
@@ -0,0 +1,1173 @@
+/* ======================================================================== *\
+!
+! *
+! * This file is part of MARS, the MAGIC Analysis and Reconstruction
+! * Software. It is distributed to you in the hope that it can be a useful
+! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
+! * It is distributed WITHOUT ANY WARRANTY.
+! *
+! * Permission to use, copy, modify and distribute this software and its
+! * documentation for any purpose is hereby granted without fee,
+! * provided that the above copyright notice appear in all copies and
+! * that both that copyright notice and this permission notice appear
+! * in supporting documentation. It is provided "as is" without express
+! * or implied warranty.
+! *
+!
+!
+!   Author(s): Thomas Bretz, 6/2003 <mailto:tbretz@astro.uni-wuerzburg.de>
+!   Author(s): Wolfgang Wittek, 7/2003 <mailto:wittek@mppmu.mpg.de>
+!
+!   Copyright: MAGIC Software Development, 2000-2003
+!
+!
+\* ======================================================================== */
+
+/////////////////////////////////////////////////////////////////////////////
+//                                                                         //
+// MFindSupercuts                                                       //
+//                                                                         //
+// Class for otimizing the parameters of the supercuts                     //
+//                                                                         //
+//                                                                         //
+//                                                                         //
+/////////////////////////////////////////////////////////////////////////////
+#include "MFindSupercuts.h"
+
+#include <math.h>            // fabs 
+
+#include <TFile.h>
+#include <TArrayD.h>
+#include <TMinuit.h>
+#include <TCanvas.h>
+#include <TStopwatch.h>
+#include <TVirtualFitter.h>
+
+#include "MBinning.h"
+#include "MContinue.h"
+#include "MSupercuts.h"
+#include "MSupercutsCalc.h"
+#include "MDataElement.h"
+#include "MDataMember.h"
+
+#include "MEvtLoop.h"
+#include "MFSelFinal.h"
+#include "MF.h"
+#include "MFEventSelector.h"
+#include "MFEventSelector2.h"
+#include "MFillH.h"
+//#include "MGeomCamCT1Daniel.h"
+#include "MFRandomSplit.h"
+#include "MGeomCamMagic.h"
+#include "MH3.h"
+#include "MHSupercuts.h"
+#include "MHFindSignificance.h"
+#include "MHMatrix.h"
+#include "MHOnSubtraction.h"
+
+#include "MLog.h"
+#include "MLogManip.h"
+#include "MMatrixLoop.h"
+#include "MMinuitInterface.h"
+#include "MParList.h"
+#include "MProgressBar.h"
+#include "MReadMarsFile.h"
+#include "MReadTree.h"
+#include "MTaskList.h"
+
+
+ClassImp(MFindSupercuts);
+
+using namespace std;
+
+
+//------------------------------------------------------------------------
+//
+// fcnSupercuts 
+//
+// - calculates the quantity to be minimized (using TMinuit)
+//
+// - the quantity to be minimized is (-1)*significance of the gamma signal
+//   in the alpha distribution (after cuts)
+//
+// - the parameters to be varied in the minimization are the cut parameters
+//   (par)
+//
+static void fcnSupercuts(Int_t &npar, Double_t *gin, Double_t &f, 
+                         Double_t *par, Int_t iflag)
+{
+    //cout <<  "entry fcnSupercuts" << endl;
+
+    //-------------------------------------------------------------
+    // save pointer to the MINUIT object for optimizing the supercuts
+    // because it will be overwritten 
+    // when fitting the alpha distribution in MHFindSignificance
+    TMinuit *savePointer = gMinuit;
+    //-------------------------------------------------------------
+
+
+    MEvtLoop *evtloopfcn = (MEvtLoop*)gMinuit->GetObjectFit();
+
+    MParList *plistfcn   = (MParList*)evtloopfcn->GetParList();
+    //MTaskList *tasklistfcn   = (MTaskList*)plistfcn->FindObject("MTaskList");
+
+    MSupercuts *super = (MSupercuts*)plistfcn->FindObject("MSupercuts");
+    if (!super)
+    {
+        gLog << "fcnSupercuts : MSupercuts object '" << "MSupercuts"
+            << "' not found... aborting" << endl;
+        return;
+    }
+
+    //
+    // transfer current parameter values to MSupercuts
+    //
+    // Attention : npar is the number of variable parameters
+    //                  not the total number of parameters
+    //
+    Double_t fMin, fEdm, fErrdef;
+    Int_t     fNpari, fNparx, fIstat;
+    gMinuit->mnstat(fMin, fEdm, fErrdef, fNpari, fNparx, fIstat);
+
+    super->SetParameters(TArrayD(fNparx, par));
+
+    //$$$$$$$$$$$$$$$$$$$$$
+    // for testing
+    //TArrayD checkparameters = super->GetParameters();
+    //gLog << "fcnsupercuts : fNpari, fNparx =" << fNpari << ",  " 
+    //     << fNparx  << endl;
+    //gLog << "fcnsupercuts : i, par, checkparameters =" << endl;
+    //for (Int_t i=0; i<fNparx; i++)
+    //{
+    //  gLog << i << ",  " << par[i] << ",  " << checkparameters[i] << endl;
+    //}
+    //$$$$$$$$$$$$$$$$$$$$$
+
+    //
+    // plot alpha with the current cuts
+    //
+    evtloopfcn->Eventloop();
+
+    //tasklistfcn->PrintStatistics(0, kTRUE);
+
+    MH3* alpha = (MH3*)plistfcn->FindObject("AlphaFcn", "MH3");
+    if (!alpha)
+        return;
+
+    TH1 &alphaHist = alpha->GetHist();
+    alphaHist.SetName("alpha-fcnSupercuts");
+
+    //-------------------------------------------
+    // set Minuit pointer to zero in order not to destroy the TMinuit
+    // object for optimizing the supercuts
+    gMinuit = NULL;
+
+    //=================================================================
+    // fit alpha distribution to get the number of excess events and
+    // calculate significance of gamma signal in the alpha plot
+  
+    const Double_t alphasig = 20.0;
+    const Double_t alphamin = 30.0;
+    const Double_t alphamax = 90.0;
+    const Int_t    degree   =    2;
+
+    Bool_t drawpoly;
+    Bool_t fitgauss;
+    if (iflag == 3)
+    {
+        drawpoly  = kTRUE;
+        fitgauss  = kTRUE;
+    }
+    else
+    {
+        drawpoly  = kFALSE;
+        fitgauss  = kFALSE;
+    }
+    //drawpoly  = kFALSE;
+    //fitgauss  = kFALSE;
+
+    const Bool_t print = kTRUE;
+
+    MHFindSignificance findsig;
+    findsig.SetRebin(kTRUE);
+    findsig.SetReduceDegree(kFALSE);
+    
+    const Bool_t rc = findsig.FindSigma(&alphaHist, alphamin, alphamax, degree,
+                                        alphasig, drawpoly, fitgauss, print);
+
+    //=================================================================
+
+    // reset gMinuit to the MINUIT object for optimizing the supercuts 
+    gMinuit = savePointer;
+    //-------------------------------------------
+
+    if (!rc)
+    {
+        gLog << "fcnSupercuts : FindSigma() failed" << endl;
+        f = 1.e10;
+        return;
+    }
+
+    // plot some quantities during the optimization
+    MHSupercuts *plotsuper = (MHSupercuts*)plistfcn->FindObject("MHSupercuts");
+    if (plotsuper)
+        plotsuper->Fill(&findsig);
+
+    //------------------------
+    // get significance
+    const Double_t significance = findsig.GetSignificance();
+    f = significance>0 ? -significance : 0;
+
+
+    //------------------------
+    // optimize signal/background ratio
+    //Double_t ratio = findsig.GetNbg()>0.0 ? 
+    //                 findsig.GetNex()/findsig.GetNbg() : 0.0; 
+    //f = -ratio;
+
+    //-------------------------------------------
+    // final calculations
+    //if (iflag == 3)
+    //{
+    //
+    //}    
+
+    //-------------------------------------------------------------
+}
+
+
+// --------------------------------------------------------------------------
+//
+// Default constructor.
+//
+MFindSupercuts::MFindSupercuts(const char *name, const char *title)
+: fHowManyTrain(10000), fHowManyTest(10000), fMatrixFilter(NULL)
+{
+    fName  = name  ? name  : "MFindSupercuts";
+    fTitle = title ? title : "Optimizer of the supercuts";
+
+    fUseOrigDistribution = kFALSE;
+
+    //---------------------------
+    // camera geometry is needed for conversion mm ==> degree
+    //fCam = new MGeomCamCT1Daniel; 
+    fCam = new MGeomCamMagic; 
+
+    // matrices to contain the training/test samples
+    fMatrixTrain = new MHMatrix("MatrixTrain");
+    fMatrixTest  = new MHMatrix("MatrixTest");
+
+    // objects of MSupercutsCalc to which these matrices are attached
+    fCalcHadTrain = new MSupercutsCalc("SupercutsCalcTrain");
+    fCalcHadTest  = new MSupercutsCalc("SupercutsCalcTest");
+
+    // Define columns of matrices
+    fCalcHadTrain->InitMapping(fMatrixTrain);
+    fCalcHadTest->InitMapping(fMatrixTest);
+}
+
+// --------------------------------------------------------------------------
+//
+// Default destructor.
+//
+MFindSupercuts::~MFindSupercuts()
+{
+    delete fCam;
+    delete fMatrixTrain;
+    delete fMatrixTest;
+    delete fCalcHadTrain;
+    delete fCalcHadTest;
+}
+
+
+// --------------------------------------------------------------------------
+//
+// 
+//
+void MFindSupercuts::SetUseOrigDistribution(Bool_t b)
+{
+  fUseOrigDistribution = b;
+
+  *fLog << "MFindSupercuts : when defining training and test matrices use the original distribution" 
+        << endl;
+}
+
+// --------------------------------------------------------------------------
+//
+// Define the matrix 'fMatrixTrain' for the training sample
+//
+// alltogether 'howmanytrain' events are read from file 'nametrain';
+// the events are selected according to a target distribution 'hreftrain'
+//
+//
+Bool_t MFindSupercuts::DefineTrainMatrix(
+			  const TString &nametrain, MH3 &hreftrain,
+	                  const Int_t howmanytrain, const TString &filetrain)
+{
+    if (nametrain.IsNull() || howmanytrain <= 0)
+        return kFALSE;
+
+    *fLog << "=============================================" << endl;
+    *fLog << "fill training matrix from file '" << nametrain 
+          << "',   select " << howmanytrain 
+          << " events " << endl;
+    if (!fUseOrigDistribution)
+    {
+      *fLog << "     according to a distribution given by the MH3 object '"
+            << hreftrain.GetName() << "'" << endl;
+    }
+    else
+    {
+      *fLog << "     randomly" << endl;
+    }
+
+
+    MParList  plist;
+    MTaskList tlist;
+
+    MReadMarsFile read("Events", nametrain);
+    read.DisableAutoScheme();
+
+    MFEventSelector2 seltrain(hreftrain);
+    seltrain.SetNumMax(howmanytrain);
+    seltrain.SetName("selectTrain");
+    if (fUseOrigDistribution)
+      seltrain.SetUseOrigDistribution(kTRUE);
+
+    MFillH filltrain(fMatrixTrain);
+    filltrain.SetFilter(&seltrain);
+    filltrain.SetName("fillMatrixTrain");
+
+    //******************************
+    // entries in MParList 
+    
+    plist.AddToList(&tlist);
+    plist.AddToList(fCam);
+    plist.AddToList(fMatrixTrain);
+
+    //******************************
+    // entries in MTaskList 
+
+    tlist.AddToList(&read);
+    tlist.AddToList(&seltrain);
+    tlist.AddToList(&filltrain);
+
+    //******************************
+
+    MProgressBar bar;
+    MEvtLoop evtloop;
+    evtloop.SetParList(&plist);
+    evtloop.SetName("EvtLoopMatrixTrain");
+    evtloop.SetProgressBar(&bar);
+
+    if (!evtloop.Eventloop())
+      return kFALSE;
+
+    tlist.PrintStatistics(0, kTRUE);
+
+    fMatrixTrain->Print("SizeCols");
+    Int_t howmanygenerated = fMatrixTrain->GetM().GetNrows();
+    if (TMath::Abs(howmanygenerated-howmanytrain) > TMath::Sqrt(9.*howmanytrain))
+    {
+      *fLog << "MFindSupercuts::DefineTrainMatrix; no.of generated events ("
+	    << howmanygenerated 
+            << ") is incompatible with the no.of requested events ("
+            << howmanytrain << ")" << endl;
+    }
+
+    *fLog << "training matrix was filled" << endl;
+    *fLog << "=============================================" << endl;
+
+    //--------------------------
+    // write out training matrix
+
+    if (filetrain != "")
+    {
+      TFile filetr(filetrain, "RECREATE");
+      fMatrixTrain->Write();
+      filetr.Close();
+
+      *fLog << "MFindSupercuts::DefineTrainMatrix; Training matrix was written onto file '"
+            << filetrain << "'" << endl;
+    }
+
+
+    return kTRUE;
+}
+
+// --------------------------------------------------------------------------
+//
+// Define the matrix for the test sample
+//
+// alltogether 'howmanytest' events are read from file 'nametest'
+//
+// the events are selected according to a target distribution 'hreftest'
+//
+//
+Bool_t MFindSupercuts::DefineTestMatrix(
+			  const TString &nametest, MH3 &hreftest,
+	                  const Int_t howmanytest, const TString &filetest)
+{
+    if (nametest.IsNull() || howmanytest<=0)
+        return kFALSE;
+
+    *fLog << "=============================================" << endl;
+    *fLog << "fill test matrix from file '" << nametest 
+          << "',   select " << howmanytest 
+          << " events " << endl;
+    if (!fUseOrigDistribution)
+    {
+      *fLog << "     according to a distribution given by the MH3 object '"
+            << hreftest.GetName() << "'" << endl;
+    }
+    else
+    {
+      *fLog << "     randomly" << endl;
+    }
+
+
+    MParList  plist;
+    MTaskList tlist;
+
+    MReadMarsFile read("Events", nametest);
+    read.DisableAutoScheme();
+
+    MFEventSelector2 seltest(hreftest);
+    seltest.SetNumMax(howmanytest);
+    seltest.SetName("selectTest");
+    if (fUseOrigDistribution)
+      seltest.SetUseOrigDistribution(kTRUE);
+ 
+    MFillH filltest(fMatrixTest);
+    filltest.SetFilter(&seltest);
+
+    //******************************
+    // entries in MParList 
+    
+    plist.AddToList(&tlist);
+    plist.AddToList(fCam);
+    plist.AddToList(fMatrixTest);
+
+    //******************************
+    // entries in MTaskList 
+
+    tlist.AddToList(&read);
+    tlist.AddToList(&seltest);
+    tlist.AddToList(&filltest);
+
+    //******************************
+
+    MProgressBar bar;
+    MEvtLoop evtloop;
+    evtloop.SetParList(&plist);
+    evtloop.SetName("EvtLoopMatrixTest");
+    evtloop.SetProgressBar(&bar);
+
+    if (!evtloop.Eventloop())
+      return kFALSE;
+
+    tlist.PrintStatistics(0, kTRUE);
+
+    fMatrixTest->Print("SizeCols");
+    const Int_t howmanygenerated = fMatrixTest->GetM().GetNrows();
+    if (TMath::Abs(howmanygenerated-howmanytest) > TMath::Sqrt(9.*howmanytest))
+    {
+      *fLog << "MFindSupercuts::DefineTestMatrix; no.of generated events ("
+	    << howmanygenerated 
+            << ") is incompatible with the no.of requested events ("
+            << howmanytest << ")" << endl;
+    }
+
+    *fLog << "test matrix was filled" << endl;
+    *fLog << "=============================================" << endl;
+
+    //--------------------------
+    // write out test matrix
+
+    if (filetest != "")
+    {
+      TFile filete(filetest, "RECREATE", "");
+      fMatrixTest->Write();
+      filete.Close();
+
+      *fLog << "MFindSupercuts::DefineTestMatrix; Test matrix was written onto file '"
+            << filetest << "'" << endl;
+    }
+
+
+  return kTRUE;
+}
+
+// --------------------------------------------------------------------------
+//
+// Define the matrices for the training and test sample respectively
+//
+//
+//
+Bool_t MFindSupercuts::DefineTrainTestMatrix(
+			  const TString &name, MH3 &href,
+	                  const Int_t howmanytrain, const Int_t howmanytest,
+                          const TString &filetrain, const TString &filetest)
+{
+    *fLog << "=============================================" << endl;
+    *fLog << "fill training and test matrix from file '" << name 
+          << "',   select "   << howmanytrain 
+          << " training and " << howmanytest << " test events " << endl;
+    if (!fUseOrigDistribution)
+    {
+      *fLog << "     according to a distribution given by the MH3 object '"
+            << href.GetName() << "'" << endl;
+    }
+    else
+    {
+      *fLog << "     randomly" << endl;
+    }
+
+
+    MParList  plist;
+    MTaskList tlist;
+
+    MReadMarsFile read("Events", name);
+    read.DisableAutoScheme();
+
+    MFEventSelector2 selector(href);
+    selector.SetNumMax(howmanytrain+howmanytest);
+    selector.SetName("selectTrainTest");
+    selector.SetInverted();
+    if (fUseOrigDistribution)
+      selector.SetUseOrigDistribution(kTRUE);
+
+    MContinue cont(&selector);
+    cont.SetName("ContTrainTest");
+
+    Double_t prob =  ( (Double_t) howmanytrain )
+                   / ( (Double_t)(howmanytrain+howmanytest) );
+    MFRandomSplit split(prob);
+
+    MFillH filltrain(fMatrixTrain);
+    filltrain.SetFilter(&split);
+    filltrain.SetName("fillMatrixTrain");
+
+
+    // consider this event as candidate for a test event 
+    // only if event was not accepted as a training event
+
+    MContinue conttrain(&split);
+    conttrain.SetName("ContTrain");
+
+    MFillH filltest(fMatrixTest);
+    filltest.SetName("fillMatrixTest");
+
+
+    //******************************
+    // entries in MParList 
+    
+    plist.AddToList(&tlist);
+    plist.AddToList(fCam);
+    plist.AddToList(fMatrixTrain);
+    plist.AddToList(fMatrixTest);
+
+    //******************************
+    // entries in MTaskList 
+
+    tlist.AddToList(&read);
+    tlist.AddToList(&cont);
+
+    tlist.AddToList(&split);
+    tlist.AddToList(&filltrain);
+    tlist.AddToList(&conttrain);
+
+    tlist.AddToList(&filltest);
+
+    //******************************
+
+    MProgressBar bar;
+    MEvtLoop evtloop;
+    evtloop.SetParList(&plist);
+    evtloop.SetName("EvtLoopMatrixTrainTest");
+    evtloop.SetProgressBar(&bar);
+
+    Int_t maxev = -1;
+    if (!evtloop.Eventloop(maxev))
+      return kFALSE;
+
+    tlist.PrintStatistics(0, kTRUE);
+
+    fMatrixTrain->Print("SizeCols");
+    const Int_t generatedtrain = fMatrixTrain->GetM().GetNrows();
+    if (TMath::Abs(generatedtrain-howmanytrain) > TMath::Sqrt(9.*howmanytrain))
+    {
+      *fLog << "MFindSupercuts::DefineTrainTestMatrix; no.of generated events ("
+	    << generatedtrain 
+            << ") is incompatible with the no.of requested events ("
+            << howmanytrain << ")" << endl;
+    }
+
+    fMatrixTest->Print("SizeCols");
+    const Int_t generatedtest = fMatrixTest->GetM().GetNrows();
+    if (TMath::Abs(generatedtest-howmanytest) > TMath::Sqrt(9.*howmanytest))
+    {
+      *fLog << "MFindSupercuts::DefineTrainTestMatrix; no.of generated events ("
+	    << generatedtest 
+            << ") is incompatible with the no.of requested events ("
+            << howmanytest << ")" << endl;
+    }
+
+
+    *fLog << "training and test matrix were filled" << endl;
+    *fLog << "=============================================" << endl;
+
+
+    //--------------------------
+    // write out training matrix
+
+    if (filetrain != "")
+    {
+      TFile filetr(filetrain, "RECREATE");
+      fMatrixTrain->Write();
+      filetr.Close();
+
+      *fLog << "MFindSupercuts::DefineTrainTestMatrix; Training matrix was written onto file '"
+            << filetrain << "'" << endl;
+    }
+
+    //--------------------------
+    // write out test matrix
+
+    if (filetest != "")
+    {
+      TFile filete(filetest, "RECREATE", "");
+      fMatrixTest->Write();
+      filete.Close();
+
+      *fLog << "MFindSupercuts::DefineTrainTestMatrix; Test matrix was written onto file '"
+            << filetest << "'" << endl;
+    }
+
+  return kTRUE;
+}
+
+// --------------------------------------------------------------------------
+//
+// Read training and test matrices from files
+//
+//
+
+Bool_t MFindSupercuts::ReadMatrix(const TString &filetrain, const TString &filetest)
+{
+  //--------------------------
+  // read in training matrix
+
+  TFile filetr(filetrain);
+  fMatrixTrain->Read("MatrixTrain");
+  fMatrixTrain->Print("SizeCols");
+
+  *fLog << "MFindSupercuts::ReadMatrix; Training matrix was read in from file '"
+        << filetrain << "'" << endl;
+  filetr.Close();
+
+
+  //--------------------------
+  // read in test matrix
+
+  TFile filete(filetest);
+  fMatrixTest->Read("MatrixTest");
+  fMatrixTest->Print("SizeCols");
+
+  *fLog << "MFindSupercuts::ReadMatrix; Test matrix was read in from file '"
+        << filetest << "'" << endl;
+  filete.Close();
+
+  return kTRUE;  
+}
+
+
+//------------------------------------------------------------------------
+//
+// Steering program for optimizing the supercuts
+// ---------------------------------------------
+//
+//      the criterion for the 'optimum' is 
+//
+//          - a maximum significance of the gamma signal in the alpha plot, 
+//            in which the supercuts have been applied
+//
+// The various steps are :
+//
+// - setup the event loop to be executed for each call to fcnSupercuts 
+// - call TMinuit to do the minimization of (-significance) :
+//        the fcnSupercuts function calculates the significance 
+//                                             for the current cut values
+//        for this - the alpha plot is produced in the event loop, 
+//                   in which the cuts have been applied
+//                 - the significance of the gamma signal in the alpha plot 
+//                   is calculated
+//
+// Needed as input : (to be set by the Set functions)
+//
+// - fFilenameParam      name of file to which optimum values of the 
+//                       parameters are written
+//
+// - fHadronnessName     name of container where MSupercutsCalc will
+//                       put the supercuts hadronness
+//
+// - for the minimization, the starting values of the parameters are taken  
+//     - from file parSCinit (if it is != "")
+//     - or from the arrays params and/or steps 
+//
+//----------------------------------------------------------------------
+Bool_t MFindSupercuts::FindParams(TString parSCinit,
+                                     TArrayD &params, TArrayD &steps)
+{
+    // Setup the event loop which will be executed in the 
+    //                 fcnSupercuts function  of MINUIT
+    //
+    // parSCinit is the name of the file containing the initial values 
+    // of the parameters; 
+    // if parSCinit = ""   'params' and 'steps' are taken as initial values
+
+    *fLog << "=============================================" << endl;
+    *fLog << "Setup event loop for fcnSupercuts" << endl;
+
+    if (fHadronnessName.IsNull())
+    {
+      *fLog << "MFindSupercuts::FindParams; hadronness name is not defined... aborting"
+            << endl;
+      return kFALSE;
+    }
+
+    if (fMatrixTrain == NULL)
+    {
+      *fLog << "MFindSupercuts::FindParams; training matrix is not defined... aborting"
+            << endl;
+      return kFALSE;
+    }
+
+    if (fMatrixTrain->GetM().GetNrows() <= 0)
+    {
+      *fLog << "MFindSupercuts::FindParams; training matrix has no entries"
+            << endl;
+      return kFALSE;
+    }
+
+    MParList  parlistfcn;
+    MTaskList tasklistfcn;
+
+    // loop over rows of matrix
+    MMatrixLoop loop(fMatrixTrain);
+
+    //--------------------------------
+    // create container for the supercut parameters
+    // and set them to their initial values
+    MSupercuts super;
+
+    // take initial values from file parSCinit
+    if (parSCinit != "")
+    {
+      TFile inparam(parSCinit);
+      super.Read("MSupercuts");
+      inparam.Close();
+      *fLog << "MFindSupercuts::FindParams; initial values of parameters are taken from file "
+            << parSCinit << endl;
+    }
+
+    // take initial values from 'params' and/or 'steps'
+    else if (params.GetSize() != 0  || steps.GetSize()  != 0 )
+    {
+      if (params.GetSize()  != 0)
+      {
+        *fLog << "MFindSupercuts::FindParams; initial values of parameters are taken from 'params'"
+              << endl;
+        super.SetParameters(params);
+      }
+      if (steps.GetSize()  != 0)
+      {
+        *fLog << "MFindSupercuts::FindParams; initial step sizes are taken from 'steps'"
+              << endl;
+        super.SetStepsizes(steps);
+      }
+    }
+    else
+    {
+        *fLog << "MFindSupercuts::FindParams; initial values and step sizes are taken from the MSupercuts constructor"
+              << endl;
+    }
+
+
+    //--------------------------------
+    // calculate supercuts hadronness
+    fCalcHadTrain->SetHadronnessName(fHadronnessName);
+
+    // apply the supercuts
+    MF scfilter(fHadronnessName+".fHadronness>0.5");
+    MContinue supercuts(&scfilter);
+
+    // plot |alpha|
+    const TString  mh3Name = "AlphaFcn";
+    MBinning binsalpha("Binning"+mh3Name);
+    binsalpha.SetEdges(54, -12.0, 96.0);
+
+    *fLog << warn << "WARNING------------>ALPHA IS ASSUMED TO BE IN COLUMN 7!!!!!!!!" << endl;
+
+    // |alpha| is assumed to be in column 7 of the matrix
+    MH3 alpha("MatrixTrain[7]");
+    alpha.SetName(mh3Name);
+
+    MFillH fillalpha(&alpha);
+
+    // book histograms to be filled during the optimization
+    //                              ! not in the event loop !
+    MHSupercuts plotsuper;
+    plotsuper.SetupFill(&parlistfcn);
+
+    //******************************
+    // entries in MParList (extension of old MParList)
+    
+    parlistfcn.AddToList(&tasklistfcn);
+    parlistfcn.AddToList(&super);
+    parlistfcn.AddToList(fCam);
+    parlistfcn.AddToList(fMatrixTrain);
+
+    parlistfcn.AddToList(&binsalpha);
+    parlistfcn.AddToList(&alpha);
+
+    parlistfcn.AddToList(&plotsuper);
+
+    //******************************
+    // entries in MTaskList
+
+    tasklistfcn.AddToList(&loop);
+    tasklistfcn.AddToList(fCalcHadTrain);
+    tasklistfcn.AddToList(&supercuts);
+    tasklistfcn.AddToList(&fillalpha);
+
+
+    //******************************
+
+    MEvtLoop evtloopfcn("EvtLoopFCN");
+    evtloopfcn.SetParList(&parlistfcn);
+    *fLog << "Event loop for fcnSupercuts has been setup" << endl;
+
+    // address of evtloopfcn is used in CallMinuit()
+
+
+    //-----------------------------------------------------------------------
+    //
+    //----------   Start of minimization part   --------------------
+    //
+    // Do the minimization with MINUIT
+    //
+    // Be careful: This is not thread safe
+    //
+    *fLog << "========================================================" << endl;
+    *fLog << "Start minimization for supercuts" << endl;
+
+
+    // -------------------------------------------
+    // prepare call to MINUIT
+    //
+
+    // get initial values of parameters 
+    fVinit = super.GetParameters();
+    fStep  = super.GetStepsizes();
+
+    TString name[fVinit.GetSize()];
+    fStep.Set(fVinit.GetSize());
+    fLimlo.Set(fVinit.GetSize());
+    fLimup.Set(fVinit.GetSize());
+    fFix.Set(fVinit.GetSize());
+
+    fNpar = fVinit.GetSize();
+
+    for (UInt_t i=0; i<fNpar; i++)
+    {
+        name[i]   = "p";
+        name[i]  += i+1;
+        //fStep[i]  = TMath::Abs(fVinit[i]/10.0);
+        fLimlo[i] = -100.0;
+        fLimup[i] =  100.0;
+        fFix[i]   =     0;
+    }
+
+    // these parameters make no sense, fix them at 0.0
+    fVinit[33] = 0.0;
+    fStep[33]  = 0.0;
+    fFix[33]   = 1;
+
+    fVinit[36] = 0.0;
+    fStep[36]  = 0.0;
+    fFix[36]   = 1;
+
+    fVinit[39] = 0.0;
+    fStep[39]  = 0.0;
+    fFix[39]   = 1;
+
+    fVinit[41] = 0.0;
+    fStep[41]  = 0.0;
+    fFix[41]   = 1;
+
+    fVinit[44] = 0.0;
+    fStep[44]  = 0.0;
+    fFix[44]   = 1;
+
+    fVinit[47] = 0.0;
+    fStep[47]  = 0.0;
+    fFix[47]   = 1;
+
+    // vary only first 48 parameters
+    //for (UInt_t i=0; i<fNpar; i++)
+    //{
+    //    if (i >= 48)
+    //	{
+    //      fStep[i] = 0.0;
+    //      fFix[i]  =   1;
+    //	}
+    //}
+ 
+
+    // -------------------------------------------
+    // call MINUIT
+
+    TStopwatch clock;
+    clock.Start();
+
+    *fLog << "before calling CallMinuit" << endl;
+
+    MMinuitInterface inter;               
+    Bool_t rc = inter.CallMinuit(fcnSupercuts, name,
+                                 fVinit, fStep, fLimlo, fLimup, fFix,
+                                 &evtloopfcn, "SIMPLEX", kFALSE);
+ 
+    *fLog << "after calling CallMinuit" << endl;
+
+    *fLog << "Time spent for the minimization in MINUIT :   " << endl;;
+    clock.Stop();
+    clock.Print();
+
+    plotsuper.DrawClone();
+
+    if (!rc)
+        return kFALSE;
+
+    *fLog << "Minimization for supercuts finished" << endl;
+    *fLog << "========================================================" << endl;
+
+
+    // -----------------------------------------------------------------
+    // in 'fcnSupercuts' (IFLAG=3) the optimum parameter values were put 
+    //                    into MSupercuts
+
+    // write optimum parameter values onto file filenameParam
+    
+    TFile outparam(fFilenameParam, "RECREATE"); 
+    super.Write();
+    outparam.Close();
+
+    *fLog << "Optimum parameter values for supercuts were written onto file '"
+              << fFilenameParam << "' :" << endl;
+
+    const TArrayD &check = super.GetParameters();
+    for (Int_t i=0; i<check.GetSize(); i++)
+        *fLog << check[i] << ",  ";
+    *fLog << endl;
+
+
+
+    *fLog << "End of  supercuts optimization part" << endl;
+    *fLog << "======================================================" << endl;
+
+    return kTRUE;
+}
+
+
+// -----------------------------------------------------------------------
+//
+// Test the supercuts on the test sample
+//
+
+Bool_t MFindSupercuts::TestParams()
+{
+    if (fMatrixTest->GetM().GetNrows() <= 0)
+    {
+        *fLog << "MFindSupercuts::TestParams; test matrix has no entries" 
+              << endl;
+        return kFALSE;
+    }
+
+    // -------------   TEST the supercuts    ------------------------------
+    //
+    *fLog << "Test the supercuts on the test sample" << endl;
+
+    // -----------------------------------------------------------------
+    // read optimum parameter values from file filenameParam
+    // into array 'supercutsPar'
+
+    TFile inparam(fFilenameParam);
+    MSupercuts scin; 
+    scin.Read("MSupercuts");
+    inparam.Close();
+
+    *fLog << "Optimum parameter values for supercuts were read from file '";
+    *fLog << fFilenameParam << "' :" << endl;
+
+    const TArrayD &supercutsPar = scin.GetParameters();
+    for (Int_t i=0; i<supercutsPar.GetSize(); i++)
+        *fLog << supercutsPar[i] << ",  ";
+    *fLog << endl;
+    //---------------------------
+
+
+    // -----------------------------------------------------------------
+    if (fHadronnessName.IsNull())
+    {
+        *fLog << "MFindSupercuts::TestParams; hadronness name is not defined... aborting";
+        *fLog << endl;
+        return kFALSE;
+    }
+
+    MParList  parlist2;
+    MTaskList tasklist2;
+
+    MSupercuts supercuts;
+    supercuts.SetParameters(supercutsPar);
+
+    fCalcHadTest->SetHadronnessName(fHadronnessName);
+
+
+    //-------------------------------------------
+
+    MMatrixLoop loop(fMatrixTest);
+
+    // plot alpha before applying the supercuts
+    const TString  mh3NameB = "AlphaBefore";
+    MBinning binsalphabef("Binning"+mh3NameB);
+    binsalphabef.SetEdges(54, -12.0, 96.0);
+
+    // |alpha| is assumed to be in column 7 of the matrix
+    MH3 alphabefore("MatrixTest[7]");
+    alphabefore.SetName(mh3NameB);
+
+    TH1 &alphahistb = alphabefore.GetHist();
+    alphahistb.SetName("alphaBefore-TestParams");
+
+    MFillH fillalphabefore(&alphabefore);
+    fillalphabefore.SetName("FillAlphaBefore");
+
+    // apply the supercuts
+    MF scfilter(fHadronnessName+".fHadronness>0.5");
+    MContinue applysupercuts(&scfilter);
+
+    // plot alpha after applying the supercuts
+    const TString  mh3NameA = "AlphaAfter";
+    MBinning binsalphaaft("Binning"+mh3NameA);
+    binsalphaaft.SetEdges(54, -12.0, 96.0);
+
+    MH3 alphaafter("MatrixTest[7]");
+    alphaafter.SetName(mh3NameA);
+
+    TH1 &alphahista = alphaafter.GetHist();
+    alphahista.SetName("alphaAfter-TestParams");
+
+    MFillH fillalphaafter(&alphaafter);
+    fillalphaafter.SetName("FillAlphaAfter");
+
+    //******************************
+    // entries in MParList
+
+    parlist2.AddToList(&tasklist2);
+
+    parlist2.AddToList(&supercuts);
+
+    parlist2.AddToList(fCam);
+    parlist2.AddToList(fMatrixTest);
+
+    parlist2.AddToList(&binsalphabef);
+    parlist2.AddToList(&alphabefore);
+
+    parlist2.AddToList(&binsalphaaft);
+    parlist2.AddToList(&alphaafter);
+
+    //******************************
+    // entries in MTaskList
+
+    tasklist2.AddToList(&loop);
+    tasklist2.AddToList(&fillalphabefore);
+
+    tasklist2.AddToList(fCalcHadTest);
+    tasklist2.AddToList(&applysupercuts);
+
+    tasklist2.AddToList(&fillalphaafter);
+
+    //******************************
+
+    MProgressBar bar2;
+    MEvtLoop evtloop2;
+    evtloop2.SetParList(&parlist2);
+    evtloop2.SetName("EvtLoopTestParams");
+    evtloop2.SetProgressBar(&bar2);
+    Int_t maxevents2 = -1;
+    if (!evtloop2.Eventloop(maxevents2))
+        return kFALSE;
+
+    tasklist2.PrintStatistics(0, kTRUE);
+
+
+    //-------------------------------------------
+    // draw the alpha plots
+
+    MH3* alphaBefore = (MH3*)parlist2.FindObject(mh3NameB, "MH3");
+    TH1  &alphaHist1 = alphaBefore->GetHist();
+    alphaHist1.SetXTitle("|\\alpha|  [\\circ]");
+
+    MH3* alphaAfter = (MH3*)parlist2.FindObject(mh3NameA, "MH3");
+    TH1  &alphaHist2 = alphaAfter->GetHist();
+    alphaHist2.SetXTitle("|\\alpha|  [\\circ]");
+    alphaHist2.SetName("alpha-TestParams");
+
+    TCanvas *c = new TCanvas("AlphaAfterSC", "AlphaTest", 600, 300);
+    c->Divide(2,1);
+
+    gROOT->SetSelectedPad(NULL);
+
+    c->cd(1);
+    alphaHist1.DrawCopy();
+
+    c->cd(2);
+    alphaHist2.DrawCopy();
+
+
+
+    //-------------------------------------------
+    // fit alpha distribution to get the number of excess events and
+    // calculate significance of gamma signal in the alpha plot
+  
+    const Double_t alphasig = 20.0;
+    const Double_t alphamin = 30.0;
+    const Double_t alphamax = 90.0;
+    const Int_t    degree   =    2;
+    const Bool_t   drawpoly  = kTRUE;
+    const Bool_t   fitgauss  = kTRUE;
+    const Bool_t   print     = kTRUE;
+
+    MHFindSignificance findsig;
+    findsig.SetRebin(kTRUE);
+    findsig.SetReduceDegree(kFALSE);
+
+    findsig.FindSigma(&alphaHist2, alphamin, alphamax, degree, 
+                      alphasig, drawpoly, fitgauss, print);
+
+    const Double_t significance = findsig.GetSignificance();
+    const Double_t alphasi = findsig.GetAlphasi();
+
+    *fLog << "Significance of gamma signal after supercuts in test sample : "
+         << significance << " (for |alpha| < " << alphasi << " degrees)" 
+         << endl;
+    //-------------------------------------------
+
+
+    *fLog << "Test of supercuts part finished" << endl;
+    *fLog << "======================================================" << endl;
+
+    return kTRUE;
+}
+
Index: trunk/MagicSoft/Mars/manalysis/MFindSupercuts.h
===================================================================
--- trunk/MagicSoft/Mars/manalysis/MFindSupercuts.h	(revision 2663)
+++ trunk/MagicSoft/Mars/manalysis/MFindSupercuts.h	(revision 2663)
@@ -0,0 +1,134 @@
+#ifndef MARS_MFindSupercuts
+#define MARS_MFindSupercuts
+
+#ifndef MARS_MParContainer
+#include "MParContainer.h"
+#endif
+
+#ifndef ROOT_TArrayD
+#include <TArrayD.h>
+#endif
+#ifndef ROOT_TArrayI
+#include <TArrayI.h>
+#endif
+
+class MFilter;
+class MEvtLoop;
+class MH3;
+class MSupercutsCalc;
+class MGeomCam;
+class MHMatrix;
+/*
+#include "MFilter.h"
+#include "MEvtLoop.h"
+#include "MH3.h"
+#include "MSupercutsCalc.h"
+#include "MGeomCam.h"
+#include "MHMatrix.h"
+*/
+
+class MFindSupercuts : public MParContainer
+{
+private:
+
+  TString fFilenameTrain;
+  TString fFilenameTest;
+
+  Int_t   fHowManyTrain;
+  Int_t   fHowManyTest;
+
+  Bool_t  fUseOrigDistribution;
+
+  TString  fFilenameParam;
+
+  TString  fHadronnessName;
+
+  MSupercutsCalc *fCalcHadTrain;
+  MSupercutsCalc *fCalcHadTest;
+
+  MHMatrix          *fMatrixTrain;
+  MHMatrix          *fMatrixTest;
+  MGeomCam          *fCam;
+
+  MEvtLoop *fObjectFit;
+
+  MFilter  *fMatrixFilter; 
+
+  // to comunicate with MINUIT -----------------
+  // attention : dimensions must agree with those in 
+  //             MMinuitInterface::CallMinuit()
+  //char    fParName [80][100];
+  TArrayD fVinit;
+  TArrayD fStep;
+  TArrayD fLimlo;
+  TArrayD fLimup;
+  TArrayI fFix;
+
+  UInt_t     fNpar;
+
+  TString    fMethod;
+
+  Double_t fMin,   fEdm,   fErrdef;
+  Int_t    fNpari, fNparx, fIstat;
+  Int_t    fErrMinimize;
+  //--------------------------------------------
+
+
+public:
+  MFindSupercuts(const char *name=NULL, const char *title=NULL);
+  ~MFindSupercuts();
+
+  void SetFilenameTraining(const TString &name, const Int_t howmany) 
+      {fFilenameTrain = name;  fHowManyTrain = howmany; }
+
+  void SetFilenameTest(const TString &name, const Int_t howmany)     
+      {fFilenameTest     = name;  fHowManyTest  = howmany; }
+
+  void SetFilenameParam(const TString &name)    {fFilenameParam  = name;}
+  void SetHadronnessName(const TString &name)   {fHadronnessName = name;}
+
+  void SetMatrixFilter(MFilter *filter)          {fMatrixFilter = filter;}
+
+  Bool_t DefineTrainMatrix(const TString &name, MH3 &href,
+                           const Int_t howmany, const TString &filetrain); 
+
+  Bool_t DefineTestMatrix(const TString &name, MH3 &href,
+                          const Int_t howmany, const TString &filetest);
+
+  Bool_t DefineTrainTestMatrix(const TString &name, MH3 &href,
+			 const Int_t howmanytrain, const Int_t howmanytest, 
+                         const TString &filetrain, const TString &filetest);
+
+  void SetUseOrigDistribution(Bool_t b);
+
+  MHMatrix *GetMatrixTrain() { return fMatrixTrain; }
+  MHMatrix *GetMatrixTest()  { return fMatrixTest;  }
+
+  Bool_t ReadMatrix( const TString &filetrain, const TString &filetest);
+
+  Bool_t FindParams(TString parSCinit, TArrayD &params, TArrayD &steps);
+  Bool_t TestParams();
+
+  ClassDef(MFindSupercuts, 1) // Class for optimization of the Supercuts
+};
+
+#endif
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Index: trunk/MagicSoft/Mars/manalysis/MPadONOFF.cc
===================================================================
--- trunk/MagicSoft/Mars/manalysis/MPadONOFF.cc	(revision 2663)
+++ trunk/MagicSoft/Mars/manalysis/MPadONOFF.cc	(revision 2663)
@@ -0,0 +1,1874 @@
+/* ======================================================================== *\
+!
+! *
+! * This file is part of MARS, the MAGIC Analysis and Reconstruction
+! * Software. It is distributed to you in the hope that it can be a useful
+! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
+! * It is distributed WITHOUT ANY WARRANTY.
+! *
+! * Permission to use, copy, modify and distribute this software and its
+! * documentation for any purpose is hereby granted without fee,
+! * provided that the above copyright notice appear in all copies and
+! * that both that copyright notice and this permission notice appear
+! * in supporting documentation. It is provided "as is" without express
+! * or implied warranty.
+! *
+!
+!
+!   Author(s): Wolfgang Wittek, 06/2003 <mailto:wittek@mppmu.mpg.de>
+!
+!   Copyright: MAGIC Software Development, 2000-2003
+!
+!
+\* ======================================================================== */
+
+/////////////////////////////////////////////////////////////////////////////
+//
+//  MPadONOFF
+//
+//  This task applies padding such that for a given pixel and for a given
+//  Theta bin the resulting distribution of the pedestal sigma is identical
+//  to the distributions given by fHSigmaPixTheta and fHDiffPixTheta.
+//
+//  The number of photons, its error and the pedestal sigmas are altered.
+//  On average, the number of photons added is zero.
+//
+//  The formulas used can be found in Thomas Schweizer's Thesis,
+//                                    Section 2.2.1
+//
+//  There are 2 options for the padding :
+//
+//  1) fPadFlag = 1 :
+//     Generate first a Sigmabar using the 2D-histogram Sigmabar vs. Theta
+//     (fHSigmaTheta). Then generate a pedestal sigma for each pixel using
+//     the 3D-histogram Theta, pixel no., Sigma^2-Sigmabar^2
+//     (fHDiffPixTheta).
+//
+//     This is the preferred option as it takes into account the
+//     correlations between the Sigma of a pixel and Sigmabar.
+//
+//  THE FOLLOWING OPTION HAS NOT BEEN TESTED :
+//  2) fPadFlag = 2 :
+//     Generate a pedestal sigma for each pixel using the 3D-histogram
+//     Theta, pixel no., Sigma (fHSigmaPixTheta).
+//
+//
+//  The padding has to be done before the image cleaning because the
+//  image cleaning depends on the pedestal sigmas.
+//
+//  For random numbers gRandom is used.
+//
+/////////////////////////////////////////////////////////////////////////////
+#include "MPadONOFF.h"
+
+#include <math.h>
+#include <stdio.h>
+
+#include <TH1.h>
+#include <TH2.h>
+#include <TH3.h>
+#include <TRandom.h>
+#include <TCanvas.h>
+#include <TFile.h>
+
+#include "MBinning.h"
+#include "MSigmabar.h"
+#include "MMcEvt.hxx"
+#include "MLog.h"
+#include "MLogManip.h"
+#include "MParList.h"
+#include "MGeomCam.h"
+
+#include "MCerPhotPix.h"
+#include "MCerPhotEvt.h"
+
+#include "MPedestalCam.h"
+#include "MPedestalPix.h"
+#include "MBlindPixels.h"
+
+#include "MRead.h"
+#include "MFilterList.h"
+#include "MTaskList.h"
+#include "MBlindPixelCalc.h"
+#include "MHBlindPixels.h"
+#include "MFillH.h"
+#include "MHSigmaTheta.h"
+#include "MEvtLoop.h"
+
+ClassImp(MPadONOFF);
+
+using namespace std;
+
+// --------------------------------------------------------------------------
+//
+// Default constructor. 
+//
+MPadONOFF::MPadONOFF(const char *name, const char *title) 
+{
+  fName  = name  ? name  : "MPadONOFF";
+  fTitle = title ? title : "Task for the ON-OFF padding";
+
+  fPadFlag = 1;
+  *fLog << all << "fPadFlag = " << fPadFlag << endl;
+
+  fType = "";
+
+  fHSigmaTheta       = NULL;
+  fHSigmaThetaON     = NULL;
+  fHSigmaThetaOFF    = NULL;
+
+  fHSigmaPixTheta    = NULL;
+  fHSigmaPixThetaON  = NULL;
+  fHSigmaPixThetaOFF = NULL;
+
+  fHDiffPixTheta     = NULL;
+  fHDiffPixThetaON   = NULL;
+  fHDiffPixThetaOFF  = NULL;
+
+  fHgON  = NULL;
+  fHgOFF = NULL;
+
+  fHBlindPixIdTheta = NULL;
+  fHBlindPixNTheta  = NULL;
+
+  fHSigmaPedestal = NULL;
+  fHPhotons       = NULL;
+  fHNSB           = NULL;
+}
+
+// --------------------------------------------------------------------------
+//
+// Destructor. 
+//
+MPadONOFF::~MPadONOFF()
+{
+  if (fHBlindPixIdTheta   != NULL) delete fHBlindPixIdTheta;
+  if (fHBlindPixNTheta    != NULL) delete fHBlindPixNTheta;
+
+  if (fHSigmaTheta    != NULL) delete fHSigmaTheta;
+  if (fHSigmaPixTheta != NULL) delete fHSigmaPixTheta;
+  if (fHDiffPixTheta  != NULL) delete fHDiffPixTheta;
+
+  if (fHSigmaPedestal != NULL) delete fHSigmaPedestal;
+  if (fHPhotons       != NULL) delete fHPhotons;
+  if (fHNSB           != NULL) delete fHNSB;
+
+  if (fInfile         != NULL) delete fInfile;
+}
+
+// --------------------------------------------------------------------------
+//
+// Merge the distributions of ON and OFF data
+//
+//   fHSigmaTheta    2D-histogram  (Theta, sigmabar)
+//   fHSigmaPixTheta 3D-hiostogram (Theta, pixel, sigma)
+//   fHDiffPixTheta  3D-histogram  (Theta, pixel, sigma^2-sigmabar^2)
+//   fHBlindPixIdTheta 2D-histogram  (Theta, blind pixel Id)
+//   fHBlindPixNTheta  2D-histogram  (Theta, no.of blind pixels )
+//
+// and define the target distributions for the padding
+//
+Bool_t MPadONOFF::MergeHistograms(TH2D *sigthon,     TH2D *sigthoff,
+                                  TH3D *sigpixthon,  TH3D *sigpixthoff,
+                                  TH3D *diffpixthon, TH3D *diffpixthoff,
+                                  TH2D *blindidthon, TH2D *blindidthoff,
+                                  TH2D *blindnthon,  TH2D *blindnthoff)
+{
+  *fLog << "----------------------------------------------------------------------------------" << endl;
+  *fLog << all << "Merge the ON and OFF histograms to obtain the target distributions for the padding"
+        << endl;
+
+  //-------------------------------------------------------------
+  // merge the distributions of ON and OFF events
+  // to obtain the target distribution fHSigmaTheta
+  //
+
+  Double_t eps = 1.e-10;
+
+  fHSigmaTheta = new TH2D( (TH2D&)*sigthon );
+  fHSigmaTheta->SetNameTitle("2D-ThetaSigmabar", "2D-ThetaSigmabar (target)");
+
+  // get binning for fHgON and fHgOFF from sigthon
+  // binning in Theta
+  TAxis *ax = sigthon->GetXaxis();
+  Int_t nbinstheta = ax->GetNbins();
+  TArrayD edgesx;
+  edgesx.Set(nbinstheta+1);
+  for (Int_t i=0; i<=nbinstheta; i++)
+  {
+    edgesx[i] = ax->GetBinLowEdge(i+1);
+    *fLog << all << "i, theta low edge = " << i << ",  " << edgesx[i] 
+          << endl; 
+  }
+  MBinning binth;
+  binth.SetEdges(edgesx);
+
+  // binning in sigmabar
+  TAxis *ay = sigthon->GetYaxis();
+  Int_t nbinssig = ay->GetNbins();
+  TArrayD edgesy;
+  edgesy.Set(nbinssig+1);
+  for (Int_t i=0; i<=nbinssig; i++)
+  {
+    edgesy[i] = ay->GetBinLowEdge(i+1); 
+    *fLog << all << "i, sigmabar low edge = " << i << ",  " << edgesy[i] 
+          << endl; 
+  }
+  MBinning binsg;
+  binsg.SetEdges(edgesy);
+
+
+  fHgON = new TH3D;
+  MH::SetBinning(fHgON, &binth, &binsg, &binsg);
+  fHgON->SetNameTitle("3D-PaddingMatrixON", "3D-PadMatrixThetaON");
+
+  fHgOFF = new TH3D;
+  MH::SetBinning(fHgOFF, &binth, &binsg, &binsg);
+  fHgOFF->SetNameTitle("3D-PaddingMatrixOFF", "3D-PadMatrixThetaOFF");
+
+  //............   loop over Theta bins   ...........................
+
+  // hista is the normalized 1D histogram of sigmabar for ON data
+  // histb is the normalized 1D histogram of sigmabar for OFF data
+  // histc is the difference ON-OFF
+
+  // at the beginning, histap is a copy of hista
+  // at the end, it will be the 1D histogram for ON data after padding
+
+  // at the beginning, histbp is a copy of histb
+  // at the end, it will be the 1D histogram for OFF data after padding
+
+  // at the beginning, histcp is a copy of histc
+  // at the end, it should be zero
+
+  *fLog << all << "MergeHistograms; bins of Theta, Sigmabarold, Sigmabarnew, fraction of events to be padded" << endl;
+  for (Int_t l=1; l<=nbinstheta; l++)
+  {
+    TH1D *hista  = sigthon->ProjectionY("sigon_y", l, l, "");
+    Stat_t suma = hista->Integral();
+    hista->Scale(1./suma);
+
+    TH1D *histap  = new TH1D( (const TH1D&)*hista );
+
+    TH1D *histb  = sigthoff->ProjectionY("sigoff_y", l, l, "");
+    Stat_t sumb = histb->Integral();
+    histb->Scale(1./sumb);
+
+    TH1D *histbp  = new TH1D( (const TH1D&)*histb );
+
+    TH1D *histc   = new TH1D( (const TH1D&)*hista );
+    histc->Add(histb, -1.0);
+
+    TH1D *histcp  = new TH1D( (const TH1D&)*histc );    
+
+
+  // calculate matrix g
+
+  // fHgON[k][j]  tells which fraction of ON events should be padded
+  //              from sigma_k to sigma_j
+
+
+  // fHgOFF[k][j] tells which fraction of OFF events should be padded
+  //              from sigma_k to sigma_j
+
+  //--------   start j loop   ------------------------------------------------
+  // loop over bins in histc, starting from the end
+  Double_t v, s, w, t, x, u, a, b, c, arg;
+
+  for (Int_t j=nbinssig; j >= 1; j--)
+  {
+    v = histcp->GetBinContent(j);
+    if ( fabs(v) < eps ) continue;
+    if (v >= 0.0) 
+      s = 1.0;
+    else
+      s = -1.0;
+
+    //................   start k loop   ......................................
+    // look for a bin k which may compensate the content of bin j
+    for (Int_t k=j-1; k >= 1; k--)
+    {
+      w = histcp->GetBinContent(k);
+      if ( fabs(w) < eps ) continue;
+      if (w >= 0.0) 
+        t = 1.0;
+      else
+        t = -1.0;
+
+      if (s==t) continue;
+
+      x = v + w;
+      if (x >= 0.0) 
+        u = 1.0;
+      else
+        u = -1.0;
+
+      if (u == s)
+      {
+        arg = -w;
+
+        if (arg <=0.0)
+	{
+          fHgON->SetBinContent (l, k, j, -arg);
+          fHgOFF->SetBinContent(l, k, j,  0.0);
+	}
+        else
+	{
+          fHgON->SetBinContent (l, k, j,  0.0);
+          fHgOFF->SetBinContent(l, k, j,  arg);
+	}
+
+
+        *fLog << "l, k, j, arg = " << l << ",  " << k << ",  " << j 
+              << ",  " << arg << endl;
+
+	//        g(k-1, j-1)   = arg;
+        //cout << "k-1, j-1, arg = " << k-1 << ",  " << j-1 << ",  " 
+        //     << arg << endl;
+
+        //......................................
+        // this is for checking the procedure
+        if (arg < 0.0)
+        {
+          a = histap->GetBinContent(k);
+          histap->SetBinContent(k, a+arg);
+          a = histap->GetBinContent(j);
+          histap->SetBinContent(j, a-arg);
+        }
+        else
+        {
+          b = histbp->GetBinContent(k);
+          histbp->SetBinContent(k, b-arg);
+          b = histbp->GetBinContent(j);
+          histbp->SetBinContent(j, b+arg);
+        }
+        //......................................
+
+        histcp->SetBinContent(k, 0.0);
+        histcp->SetBinContent(j,   x);
+
+        //......................................
+        // redefine v 
+        v = histcp->GetBinContent(j);
+        if ( fabs(v) < eps ) break;
+        if (v >= 0.0) 
+          s = 1.0;
+        else
+          s = -1.0;
+        //......................................
+       
+        continue;
+      }
+
+      arg = v;
+
+      if (arg <=0.0)
+      {
+        fHgON->SetBinContent (l, k, j, -arg);
+        fHgOFF->SetBinContent(l, k, j,  0.0);
+      }
+      else
+      {
+        fHgON->SetBinContent (l, k, j,  0.0);
+        fHgOFF->SetBinContent(l, k, j,  arg);
+      }
+
+      *fLog << "l, k, j, arg = " << l << ",  " << k << ",  " << j 
+            << ",  " << arg << endl;
+
+      //g(k-1, j-1) = arg;
+      //cout << "k-1, j-1, arg = " << k-1 << ",  " << j-1 << ",  " 
+      //     << arg << endl;
+
+      //......................................
+      // this is for checking the procedure
+      if (arg < 0.0)
+      {
+        a = histap->GetBinContent(k);
+        histap->SetBinContent(k, a+arg);
+        a = histap->GetBinContent(j);
+        histap->SetBinContent(j, a-arg);
+      }
+      else
+      {
+        b = histbp->GetBinContent(k);
+
+        histbp->SetBinContent(k, b-arg);
+        b = histbp->GetBinContent(j);
+        histbp->SetBinContent(j, b+arg);
+      }
+      //......................................
+
+      histcp->SetBinContent(k,   x);
+      histcp->SetBinContent(j, 0.0);
+
+      break;
+    }
+    //................   end k loop   ......................................
+  } 
+  //--------   end j loop   ------------------------------------------------
+
+  // check results for this Theta bin
+  for (Int_t j=1; j<=nbinssig; j++)
+  {
+    a = histap->GetBinContent(j);
+    b = histbp->GetBinContent(j);
+    c = histcp->GetBinContent(j);
+
+    if( fabs(a-b)>3.0*eps  ||  fabs(c)>3.0*eps )
+      *fLog << err << "Read; inconsistency in results; a, b, c = "
+            << a << ",  " << b << ",  " << c << endl;
+  }
+    
+
+  // fill target distribution SigmaTheta
+  // for this Theta bin
+  //
+  for (Int_t j=1; j<=nbinssig; j++)
+  {
+    a = histap->GetBinContent(j);
+    fHSigmaTheta->SetBinContent(l, j, a);
+  }
+
+  delete hista;
+  delete histb;
+  delete histc;
+
+  delete histap;
+  delete histbp;
+  delete histcp;
+  }
+  //............   end of loop over Theta bins   ....................
+
+  
+  // target distributions for MC
+  //        SigmaPixTheta and DiffPixTheta
+  //        BlindPixIdTheta and BlindPixNTheta     
+  // are calculated as averages of the ON and OFF distributions
+
+  // Note : in all histograms the pedestal RMS is assumed to be given in units of "number of photons"
+
+  fHSigmaThetaON = sigthon;
+  fHSigmaThetaON->SetNameTitle("2D-ThetaSigmabarON", "2D-ThetaSigmabarON (target)");
+
+  fHSigmaThetaOFF = sigthoff;
+  fHSigmaThetaOFF->SetNameTitle("2D-ThetaSigmabarOFF", "2D-ThetaSigmabarOFF (target)");
+
+
+  fHBlindPixNTheta = new TH2D( (TH2D&)*blindnthon );
+  fHBlindPixNTheta->SetNameTitle("2D-ThetaBlindN", "2D-ThetaBlindN (target)");
+
+  fHBlindPixIdTheta = new TH2D( (TH2D&)*blindidthon );
+  fHBlindPixIdTheta->SetNameTitle("2D-ThetaBlindId", "2D-ThetaBlindId (target)");
+
+  fHSigmaPixTheta = new TH3D( (TH3D&)*sigpixthon );
+  fHSigmaPixTheta->SetNameTitle("3D-ThetaPixSigma", "3D-ThetaPixSigma (target)");
+
+  fHSigmaPixThetaON = sigpixthon;
+  fHSigmaPixThetaON->SetNameTitle("3D-ThetaPixSigmaON", "3D-ThetaPixSigmaON (target)");
+
+  fHSigmaPixThetaOFF = sigpixthoff;
+  fHSigmaPixThetaOFF->SetNameTitle("3D-ThetaPixSigmaOFF", "3D-ThetaPixSigmaOFF (target)");
+
+  fHDiffPixTheta = new TH3D( (TH3D&)*diffpixthon );
+  fHDiffPixTheta->SetNameTitle("3D-ThetaPixDiff", "3D-ThetaPixDiff (target)");
+
+  fHDiffPixThetaON = diffpixthon;
+  fHDiffPixThetaON->SetNameTitle("3D-ThetaPixDiffON", "3D-ThetaPixDiffON (target)");
+
+  fHDiffPixThetaOFF = diffpixthoff;
+  fHDiffPixThetaOFF->SetNameTitle("3D-ThetaPixDiffOFF", "3D-ThetaPixDiffOFF (target)");
+
+
+  for (Int_t j=1; j<=nbinstheta; j++)
+  {
+    // fraction of ON/OFF events to be padded to a sigmabar 
+    // of the OFF/ON events : fracON, fracOFF
+
+    Double_t fracON  = fHgON->Integral (j, j, 1, nbinssig, 1, nbinssig, "");
+    Double_t fracOFF = fHgOFF->Integral(j, j, 1, nbinssig, 1, nbinssig, "");
+
+    TAxis *ax;
+    TAxis *ay;
+    TAxis *az;
+
+    Double_t entON;
+    Double_t entOFF;
+
+    Double_t normON;
+    Double_t normOFF;
+
+    // set ranges for 2D-projections of 3D-histograms
+    ax = sigpixthon->GetXaxis();
+    ax->SetRange(j, j);
+    ax = sigpixthoff->GetXaxis();
+    ax->SetRange(j, j);
+
+    ax = diffpixthon->GetXaxis();
+    ax->SetRange(j, j);
+    ax = diffpixthoff->GetXaxis();
+    ax->SetRange(j, j);
+
+    TH2D *hist;
+    TH2D *histOFF;
+
+    TH1D *hist1;
+    TH1D *hist1OFF;
+
+    // weights for ON and OFF distrubtions when
+    // calculating the weighted average
+    Double_t facON  = 0.5 * (1. - fracON + fracOFF);
+    Double_t facOFF = 0.5 * (1. + fracON - fracOFF);
+  
+    *fLog << all << fracON << ",  " << fracOFF << ",  "
+          << facON  << ",  " << facOFF  << endl; 
+    //-------------------------------------------
+    ay = blindnthon->GetYaxis();
+    Int_t nbinsn = ay->GetNbins();
+
+    hist1    = (TH1D*)blindnthon->ProjectionY ("", j, j, "");
+    hist1->SetName("dummy");
+    hist1OFF = (TH1D*)blindnthoff->ProjectionY("", j, j, "");
+
+    // number of events in this theta bin
+    entON  = hist1->Integral();
+    entOFF = hist1OFF->Integral();
+
+    *fLog << all << "BlindPixNTheta : j, entON, entOFF = " << j << ",  " 
+          << entON  << ",  " << entOFF  << endl;
+
+    normON  = entON<=0.0  ? 0.0 : 1.0/entON;
+    normOFF = entOFF<=0.0 ? 0.0 : 1.0/entOFF;
+
+    hist1->Scale(normON);
+    hist1OFF->Scale(normOFF);
+
+    // weighted average of ON and OFF distributions
+    hist1->Scale(facON);
+    hist1->Add(hist1OFF, facOFF); 
+
+    for (Int_t k=1; k<=nbinsn; k++)
+      {
+        Double_t cont = hist1->GetBinContent(k);
+        fHBlindPixNTheta->SetBinContent(j, k, cont);  
+      }
+
+    delete hist1;
+    delete hist1OFF;
+
+    //-------------------------------------------
+    ay = blindidthon->GetYaxis();
+    Int_t nbinsid = ay->GetNbins();
+
+    hist1    = (TH1D*)blindidthon->ProjectionY ("", j, j, "");
+    hist1->SetName("dummy");
+    hist1OFF = (TH1D*)blindidthoff->ProjectionY("", j, j, "");
+
+    hist1->Scale(normON);
+    hist1OFF->Scale(normOFF);
+
+    // weighted average of ON and OFF distributions
+    hist1->Scale(facON);
+    hist1->Add(hist1OFF, facOFF); 
+
+    for (Int_t k=1; k<=nbinsid; k++)
+      {
+        Double_t cont = hist1->GetBinContent(k);
+        fHBlindPixIdTheta->SetBinContent(j, k, cont);  
+      }
+
+    delete hist1;
+    delete hist1OFF;
+
+    //-------------------------------------------
+    ay = sigpixthon->GetYaxis();
+    Int_t nbinspix = ay->GetNbins();
+
+    az = sigpixthon->GetZaxis();
+    Int_t nbinssigma = az->GetNbins();
+
+    hist    = (TH2D*)sigpixthon->Project3D("zy");
+    hist->SetName("dummy");
+    histOFF = (TH2D*)sigpixthoff->Project3D("zy");
+
+    hist->Scale(normON);
+    histOFF->Scale(normOFF);
+
+    // weighted average of ON and OFF distributions
+
+    hist->Scale(facON);
+    hist->Add(histOFF, facOFF); 
+
+    for (Int_t k=1; k<=nbinspix; k++)
+      for (Int_t l=1; l<=nbinssigma; l++)
+      {
+        Double_t cont = hist->GetBinContent(k,l);
+        fHSigmaPixTheta->SetBinContent(j, k, l, cont);  
+      }
+
+    delete hist;
+    delete histOFF;
+
+    //-------------------------------------------
+    ay = diffpixthon->GetYaxis();
+    Int_t nbinspixel = ay->GetNbins();
+
+    az = diffpixthon->GetZaxis();
+    Int_t nbinsdiff = az->GetNbins();
+
+    hist    = (TH2D*)diffpixthon->Project3D("zy");
+    hist->SetName("dummy");
+    histOFF = (TH2D*)diffpixthoff->Project3D("zy");
+
+    hist->Scale(normON);
+    histOFF->Scale(normOFF);
+
+    // weighted average of ON and OFF distributions
+    hist->Scale(facON);
+    hist->Add(histOFF, facOFF); 
+
+    for (Int_t k=1; k<=nbinspixel; k++)
+      for (Int_t l=1; l<=nbinsdiff; l++)
+      {
+        Double_t cont = hist->GetBinContent(k,l);
+        fHDiffPixTheta->SetBinContent(j, k, l, cont);  
+      }
+
+    delete hist;
+    delete histOFF;
+
+    //-------------------------------------------
+  }
+
+
+  *fLog << all << "The target distributions for the padding have been created" 
+        << endl;
+  *fLog << all << "----------------------------------------------------------" 
+        << endl;
+  //--------------------------------------------
+
+  fHSigmaTheta->SetDirectory(NULL);
+  fHSigmaThetaON->SetDirectory(NULL);
+  fHSigmaThetaOFF->SetDirectory(NULL);
+
+  fHSigmaPixTheta->SetDirectory(NULL);
+  fHSigmaPixThetaON->SetDirectory(NULL);
+  fHSigmaPixThetaOFF->SetDirectory(NULL);
+
+  fHDiffPixTheta->SetDirectory(NULL);
+  fHDiffPixThetaON->SetDirectory(NULL);
+  fHDiffPixThetaOFF->SetDirectory(NULL);
+
+  fHBlindPixIdTheta->SetDirectory(NULL);
+  fHBlindPixNTheta->SetDirectory(NULL);
+
+
+  fHgON->SetDirectory(NULL);
+  fHgOFF->SetDirectory(NULL);
+
+
+  return kTRUE;
+}
+
+
+// --------------------------------------------------------------------------
+//
+// Read target distributions from a file
+//
+//
+Bool_t MPadONOFF::ReadTargetDist(const char* namefilein)
+{
+  *fLog << all << "Read padding histograms from file " << namefilein << endl;
+
+  fInfile = new TFile(namefilein);
+  fInfile->ls();
+
+    //------------------------------------
+
+      fHSigmaTheta = 
+      (TH2D*) gROOT->FindObject("2D-ThetaSigmabar");
+      if (!fHSigmaTheta)
+	{
+          *fLog << all << "Object '2D-ThetaSigmabar' not found on root file" 
+                << endl;
+          return kFALSE;
+	}
+      *fLog << all << "Object '2D-ThetaSigmabar' was read in" << endl;
+
+      fHSigmaThetaON = 
+      (TH2D*) gROOT->FindObject("2D-ThetaSigmabarON");
+      if (!fHSigmaThetaON)
+	{
+          *fLog << all << "Object '2D-ThetaSigmabarON' not found on root file" 
+                << endl;
+          return kFALSE;
+	}
+      *fLog << all << "Object '2D-ThetaSigmabarON' was read in" << endl;
+
+      fHSigmaThetaOFF = 
+      (TH2D*) gROOT->FindObject("2D-ThetaSigmabarOFF");
+      if (!fHSigmaThetaOFF)
+	{
+          *fLog << "Object '2D-ThetaSigmabarOFF' not found on root file" 
+                << endl;
+          return kFALSE;
+	}
+      *fLog << all << "Object '2D-ThetaSigmabarOFF' was read in" << endl;
+
+      fHSigmaPixTheta = 
+      (TH3D*) gROOT->FindObject("3D-ThetaPixSigma");
+      if (!fHSigmaPixTheta)
+	{
+          *fLog << all << "Object '3D-ThetaPixSigma' not found on root file" 
+                << endl;
+          return kFALSE;
+	}
+      *fLog << all << "Object '3D-ThetaPixSigma' was read in" << endl;
+
+      fHSigmaPixThetaON = 
+      (TH3D*) gROOT->FindObject("3D-ThetaPixSigmaON");
+      if (!fHSigmaPixThetaON)
+	{
+          *fLog << all << "Object '3D-ThetaPixSigmaON' not found on root file" 
+                << endl;
+          return kFALSE;
+	}
+      *fLog << all << "Object '3D-ThetaPixSigmaON' was read in" << endl;
+
+      fHSigmaPixThetaOFF = 
+      (TH3D*) gROOT->FindObject("3D-ThetaPixSigmaOFF");
+      if (!fHSigmaPixThetaOFF)
+	{
+          *fLog << all << "Object '3D-ThetaPixSigmaOFF' not found on root file"
+                << endl;
+          return kFALSE;
+	}
+      *fLog << "Object '3D-ThetaPixSigmaOFF' was read in" << endl;
+
+      fHDiffPixTheta = 
+      (TH3D*) gROOT->FindObject("3D-ThetaPixDiff");
+      if (!fHDiffPixTheta)
+	{
+          *fLog << all << "Object '3D-ThetaPixDiff' not found on root file" 
+                << endl;
+          return kFALSE;
+	}
+      *fLog << all << "Object '3D-ThetaPixDiff' was read in" << endl;
+
+      fHDiffPixThetaON = 
+      (TH3D*) gROOT->FindObject("3D-ThetaPixDiffON");
+      if (!fHDiffPixThetaON)
+	{
+          *fLog << all << "Object '3D-ThetaPixDiffON' not found on root file" 
+                << endl;
+          return kFALSE;
+	}
+      *fLog << "Object '3D-ThetaPixDiffON' was read in" << endl;
+
+      fHDiffPixThetaOFF = 
+      (TH3D*) gROOT->FindObject("3D-ThetaPixDiffOFF");
+      if (!fHDiffPixThetaOFF)
+	{
+          *fLog << all << "Object '3D-ThetaPixDiffOFF' not found on root file" 
+                << endl;
+          return kFALSE;
+	}
+      *fLog << all << "Object '3D-ThetaPixDiffOFF' was read in" << endl;
+
+      fHgON = 
+      (TH3D*) gROOT->FindObject("3D-PaddingMatrixON");
+      if (!fHgON)
+	{
+          *fLog << all << "Object '3D-PaddingMatrixON' not found on root file" 
+                << endl;
+          return kFALSE;
+	}
+      *fLog << all << "Object '3D-PaddingMatrixON' was read in" << endl;
+
+      fHgOFF = 
+      (TH3D*) gROOT->FindObject("3D-PaddingMatrixOFF");
+      if (!fHgOFF)
+	{
+          *fLog << all << "Object '3D-PaddingMatrixOFF' not found on root file"
+                << endl;
+          return kFALSE;
+	}
+      *fLog << all << "Object '3D-PaddingMatrixOFF' was read in" << endl;
+
+
+      fHBlindPixIdTheta = 
+      (TH2D*) gROOT->FindObject("2D-ThetaBlindId");
+      if (!fHBlindPixIdTheta)
+	{
+          *fLog << all << "Object '2D-ThetaBlindId' not found on root file" 
+                << endl;
+          return kFALSE;
+	}
+      *fLog << all << "Object '2D-ThetaBlindId' was read in" << endl;
+
+      fHBlindPixNTheta = 
+      (TH2D*) gROOT->FindObject("2D-ThetaBlindN");
+      if (!fHBlindPixNTheta)
+	{
+          *fLog << all << "Object '2D-ThetaBlindN' not found on root file" 
+                << endl;
+          return kFALSE;
+	}
+      *fLog << all << "Object '2D-ThetaBlindN' was read in" << endl;
+
+
+    //------------------------------------
+
+  return kTRUE;
+}
+
+
+// --------------------------------------------------------------------------
+//
+// Write target distributions onto a file
+//
+//
+Bool_t MPadONOFF::WriteTargetDist(const char* namefileout)
+{
+  *fLog << all << "Write padding histograms onto file " << namefileout << endl;
+
+  TFile outfile(namefileout, "RECREATE");
+
+  fHBlindPixNTheta->Write();
+  fHBlindPixIdTheta->Write();
+
+  fHSigmaTheta->Write();
+  fHSigmaThetaON->Write();
+  fHSigmaThetaOFF->Write();
+
+  fHSigmaPixTheta->Write();
+  fHSigmaPixThetaON->Write();
+  fHSigmaPixThetaOFF->Write();
+
+  fHDiffPixTheta->Write();
+  fHDiffPixThetaON->Write();
+  fHDiffPixThetaOFF->Write();
+
+  fHgON->Write();
+  fHgOFF->Write();
+
+  *fLog << all << "WriteTargetDist; target histograms written onto file "
+        << namefileout << endl;
+
+  return kTRUE;
+}
+
+// --------------------------------------------------------------------------
+//
+// Set type of data to be padded
+//
+//     this is not necessary if the type of the data can be recognized
+//     directly from the input
+//
+//
+void MPadONOFF::SetDataType(const char* type)
+{
+  fType = type;
+  *fLog << all << "SetDataType(); type of data to be padded : " 
+        << fType << endl; 
+
+  return;
+}
+
+
+// --------------------------------------------------------------------------
+//
+// Set the option for the padding
+//
+//  There are 2 options for the padding :
+//
+//  1) fPadFlag = 1 :
+//     Generate first a Sigmabar using the 2D-histogram Sigmabar vs. Theta
+//     (fHSigmaTheta). Then generate a pedestal sigma for each pixel using
+//     the 3D-histogram Theta, pixel no., Sigma^2-Sigmabar^2
+//     (fHDiffPixTheta).
+//
+//     This is the preferred option as it takes into account the
+//     correlations between the Sigma of a pixel and Sigmabar.
+//
+//  NOT YET TESTED :
+//  2) fPadFlag = 2 :
+//     Generate a pedestal sigma for each pixel using the 3D-histogram
+//     Theta, pixel no., Sigma (fHSigmaPixTheta).
+//
+void MPadONOFF::SetPadFlag(Int_t padflag)
+{
+  fPadFlag = padflag;
+  *fLog << all << "SetPadFlag(); choose option " << fPadFlag << endl; 
+}
+
+// --------------------------------------------------------------------------
+//
+//  Set the pointers and prepare the histograms
+//
+Int_t MPadONOFF::PreProcess(MParList *pList)
+{
+  if ( !fHSigmaTheta       ||  !fHSigmaThetaON    ||  !fHSigmaThetaOFF    ||  
+       !fHSigmaPixTheta    ||  !fHSigmaPixThetaON ||  !fHSigmaPixThetaOFF ||
+       !fHDiffPixTheta     ||  !fHDiffPixThetaON  ||  !fHDiffPixThetaOFF  ||
+       !fHBlindPixIdTheta  ||  !fHBlindPixNTheta  ||
+       !fHgON              ||  !fHgOFF)
+  { 
+       *fLog << err << "At least one of the histograms needed for the padding is not defined ... aborting." << endl;
+       return kFALSE;
+  }
+
+  fMcEvt = (MMcEvt*)pList->FindObject("MMcEvt");
+  if (!fMcEvt)
+    {
+       *fLog << err << dbginf << "MMcEvt not found... aborting." << endl;
+       return kFALSE;
+     }
+  
+   fPed = (MPedestalCam*)pList->FindObject("MPedestalCam");
+   if (!fPed)
+     {
+       *fLog << err << "MPedestalCam not found... aborting." << endl;
+       return kFALSE;
+     }
+
+   fCam = (MGeomCam*)pList->FindObject("MGeomCam");
+   if (!fCam)
+     {
+       *fLog << err << "MGeomCam not found (no geometry information available)... aborting." << endl;
+       return kFALSE;
+     }
+  
+   fEvt = (MCerPhotEvt*)pList->FindObject("MCerPhotEvt");
+   if (!fEvt)
+     {
+       *fLog << err << "MCerPhotEvt not found... aborting." << endl;
+       return kFALSE;
+     }
+
+   fSigmabar = (MSigmabar*)pList->FindCreateObj("MSigmabar");
+   if (!fSigmabar)
+     {
+       *fLog << err << "MSigmabar not found... aborting." << endl;
+       return kFALSE;
+     }
+
+   fBlinds = (MBlindPixels*)pList->FindCreateObj("MBlindPixels");
+   if (!fBlinds)
+     {
+       *fLog << err << "MBlindPixels not found... aborting." << endl;
+       return kFALSE;
+     }
+   
+   if (fType !="ON"  &&  fType !="OFF"  &&  fType !="MC")
+     {
+       *fLog << err << "Type of data to be padded not defined... aborting." << endl;
+       return kFALSE;
+     }
+
+
+   //--------------------------------------------------------------------
+   // histograms for checking the padding
+   //
+   // plot pedestal sigmas
+   fHSigmaPedestal = new TH2D("SigPed","Sigma: after vs. before padding", 
+                     100, 0.0, 5.0, 100, 0.0, 5.0);
+   fHSigmaPedestal->SetXTitle("Pedestal sigma before padding");
+   fHSigmaPedestal->SetYTitle("Pedestal sigma after padding");
+
+   // plot no.of photons (before vs. after padding) 
+   fHPhotons = new TH2D("Photons","Photons: after vs.before padding", 
+                        100, -10.0, 90.0, 100, -10, 90);
+   fHPhotons->SetXTitle("no.of photons before padding");
+   fHPhotons->SetYTitle("no.of photons after padding");
+
+   // plot of added NSB
+   fHNSB = new TH1D("NSB","Distribution of added NSB", 100, -10.0, 10.0);
+   fHNSB->SetXTitle("no.of added NSB photons");
+   fHNSB->SetYTitle("no.of pixels");
+
+
+   //--------------------------------------------------------------------
+
+   fIter = 20;
+
+   memset(fErrors, 0, sizeof(fErrors));
+
+   return kTRUE;
+}
+
+// --------------------------------------------------------------------------
+//
+// Do the Padding
+// idealy the events to be padded should have been generated without NSB
+// 
+Int_t MPadONOFF::Process()
+{
+  *fLog << all << "Entry Process();" << endl;
+
+  // this is the conversion factor from the number of photons
+  //                                 to the number of photo electrons
+  // later to be taken from MCalibration
+  // fPEpePhoton = PW * LG * QE * 1D
+  Double_t fPEperPhoton = 0.95 * 0.90 * 0.13 * 0.9;
+
+  //------------------------------------------------
+  // add pixels to MCerPhotEvt which are not yet in;
+  // set their number of photons equal to zero
+
+  UInt_t imaxnumpix = fCam->GetNumPixels();
+
+  for (UInt_t i=0; i<imaxnumpix; i++)
+  {
+    Bool_t alreadythere = kFALSE;
+    UInt_t npix = fEvt->GetNumPixels();
+    for (UInt_t j=0; j<npix; j++)
+    {
+      MCerPhotPix &pix = (*fEvt)[j];
+      UInt_t id = pix.GetPixId();
+      if (i==id)
+      {
+        alreadythere = kTRUE;
+        break;
+      }
+    }
+    if (alreadythere)
+      continue;
+
+    fEvt->AddPixel(i, 0.0, (*fPed)[i].GetPedestalRms());
+  }
+
+
+
+  //-----------------------------------------
+  Int_t rc=0;
+  Int_t rw=0;
+
+  const UInt_t npix = fEvt->GetNumPixels();
+
+  //fSigmabar->Calc(*fCam, *fPed, *fEvt);
+  // *fLog << all << "before padding : " << endl;
+  //fSigmabar->Print("");
+
+
+  //$$$$$$$$$$$$$$$$$$$$$$$$$$
+  // to simulate the situation that before the padding the NSB and 
+  // electronic noise are zero : set Sigma = 0 for all pixels
+  //for (UInt_t i=0; i<npix; i++) 
+  //{   
+  //  MCerPhotPix &pix = fEvt->operator[](i);      
+  //  Int_t j = pix.GetPixId();
+
+  //  MPedestalPix &ppix = fPed->operator[](j);
+  //  ppix.SetMeanRms(0.0);
+  //}
+  //$$$$$$$$$$$$$$$$$$$$$$$$$$
+
+  //-------------------------------------------
+  // Calculate average sigma of the event
+  //
+  Double_t sigbarold_phot = fSigmabar->Calc(*fCam, *fPed, *fEvt);
+  *fLog << all << "before padding : " << endl;
+  fSigmabar->Print("");
+  Double_t sigbarold = sigbarold_phot * fPEperPhoton;
+
+
+  Double_t sigbarold2 = sigbarold*sigbarold;
+
+
+  // for MC data : expect sigmabar to be zero before the padding
+  if (fType == "MC")
+  {
+    if (sigbarold_phot > 0)
+    {
+       *fLog << warn << "Process(); sigmabar of event to be padded is > 0 : "
+            << sigbarold_phot << ". Stop event loop " << endl;
+       // input data should have sigmabar = 0; stop event loop
+  
+      rc = 1;
+      fErrors[rc]++;
+      return kCONTINUE; 
+    }
+  }
+
+  const Double_t theta = kRad2Deg*fMcEvt->GetTelescopeTheta();
+  *fLog << all << "theta = " << theta << endl;
+
+  Int_t binTheta = fHBlindPixNTheta->GetXaxis()->FindBin(theta);
+  if ( binTheta < 1  ||  binTheta > fHBlindPixNTheta->GetNbinsX() )
+  {
+    *fLog << warn << "Process(); binNumber out of range : theta, binTheta = "
+          << theta << ",  " << binTheta << ";  Skip event " << endl;
+    // event cannot be padded; skip event
+
+    rc = 2;
+    fErrors[rc]++;
+    return kCONTINUE;
+  }
+
+  //-------------------------------------------
+  // get number of events in this theta bin
+  // and number of events in this sigbarold_phot bin
+
+  Double_t nTheta;
+  Double_t nSigma;
+  if (fType == "ON")
+  {
+    TH1D *hn;
+
+    hn = fHSigmaThetaON->ProjectionY("", binTheta, binTheta, "");
+    nTheta = hn->Integral();
+    Int_t binSigma = hn->FindBin(sigbarold_phot);
+    nSigma = hn->GetBinContent(binSigma);
+
+     *fLog << all 
+           << "Theta, sigbarold_phot, binTheta, binSigma, nTheta, nSigma = "
+          << theta << ",  " << sigbarold_phot << ",  " << binTheta << ",  "
+          << binSigma << ",  " << nTheta << ",  " << nSigma   << endl;      
+
+    delete hn;
+  }
+
+  else if (fType == "OFF")
+  {
+    TH1D *hn;
+
+    hn = fHSigmaThetaOFF->ProjectionY("", binTheta, binTheta, "");
+    nTheta = hn->Integral();
+    Int_t binSigma = hn->FindBin(sigbarold_phot);
+    nSigma = hn->GetBinContent(binSigma);
+
+    *fLog << all 
+           << "Theta, sigbarold_phot, binTheta, binSigma, nTheta, nSigma = "
+          << theta << ",  " << sigbarold_phot << ",  " << binTheta << ",  "
+          << binSigma << ",  " << nTheta << ",  " << nSigma   << endl;      
+
+    delete hn;
+  }
+
+  else
+  {
+    nTheta = 0.0;
+    nSigma = 0.0;
+  }
+
+  //-------------------------------------------
+  // for the current theta, 
+  // generate blind pixels according to the histograms 
+  //          fHBlindPixNTheta and fHBlindPixIDTheta
+  // do this only for MC data
+
+
+  if (fType == "MC")
+  {
+
+  // numBlind is the number of blind pixels in this event
+  TH1D *nblind;
+  UInt_t numBlind;
+
+  nblind = fHBlindPixNTheta->ProjectionY("", binTheta, binTheta, "");
+  if ( nblind->Integral() == 0.0 )
+  {
+    *fLog << warn << "Process(); projection for Theta bin " 
+          << binTheta << " has no entries; Skip event " << endl;
+    // event cannot be padded; skip event
+    delete nblind;
+
+    rc = 7;
+    fErrors[rc]++;
+    return kCONTINUE;
+  }
+  else
+  {
+    numBlind = (Int_t) (nblind->GetRandom()+0.5);
+  }
+  delete nblind;
+
+  //warn Code commented out due no compilation errors on Alpha OSF (tgb)
+
+  // throw the Id of numBlind different pixels in this event
+  TH1D *hblind;
+  UInt_t idBlind;
+  UInt_t listId[npix];
+  UInt_t nlist = 0;
+  Bool_t equal;
+
+  hblind = fHBlindPixIdTheta->ProjectionY("", binTheta, binTheta, "");
+  if ( hblind->Integral() > 0.0 )
+    for (UInt_t i=0; i<numBlind; i++)
+    {
+      while(1)
+      {
+        idBlind = (Int_t) (hblind->GetRandom()+0.5);
+        equal = kFALSE;
+        for (UInt_t j=0; j<nlist; j++)
+          if (idBlind == listId[j])
+	  { 
+            equal = kTRUE;
+            break;
+	  }
+        if (!equal) break;
+      }
+      listId[nlist] = idBlind;
+      nlist++;
+
+      fBlinds->SetPixelBlind(idBlind);
+      *fLog << all << "idBlind = " << idBlind << endl;
+    }
+  fBlinds->SetReadyToSave();
+
+  delete hblind;
+
+  }
+
+  //******************************************************************
+  // has the event to be padded ?
+  // if yes : to which sigmabar should it be padded ?
+  //
+
+  Int_t binSig = fHgON->GetYaxis()->FindBin(sigbarold_phot);
+  *fLog << all << "binSig, sigbarold_phot = " << binSig << ",  " 
+          << sigbarold_phot << endl;
+
+  Double_t prob;
+  TH1D *hpad = NULL;
+  if (fType == "ON")
+  {
+    hpad = fHgON->ProjectionZ("zON", binTheta, binTheta, binSig, binSig, "");
+
+    //Int_t nb = hpad->GetNbinsX();
+    //for (Int_t i=1; i<=nb; i++)
+    //{
+    //  if (hpad->GetBinContent(i) != 0.0)
+    //    *fLog << all << "i, fHgON = " << i << ",  " 
+    //          << hpad->GetBinContent(i) << endl;
+    //}
+
+    if (nSigma != 0.0)
+      prob = hpad->Integral() * nTheta/nSigma;
+    else
+      prob = 0.0;
+
+     *fLog << all << "nTheta, nSigma, prob = " << nTheta << ",  " << nSigma 
+           << ",  " << prob << endl;
+  }
+  else if (fType == "OFF")
+  {
+    hpad = fHgOFF->ProjectionZ("zOFF", binTheta, binTheta, binSig, binSig, "");
+    if (nSigma != 0.0)
+      prob = hpad->Integral() * nTheta/nSigma;
+    else
+      prob = 0.0;
+  }
+  else
+    prob = 1.0;
+
+  if ( fType != "MC"  &&
+       (prob <= 0.0  ||  gRandom->Uniform() > prob) )
+  {
+    delete hpad;
+    // event should not be padded
+    *fLog << all << "event is not padded" << endl;
+
+    rc = 8;
+    fErrors[rc]++;
+    return kTRUE;
+  }
+  // event should be padded
+  *fLog << all << "event is padded" << endl;  
+
+
+  //-------------------------------------------
+  // for the current theta, generate a sigmabar 
+  //
+  // for ON/OFF data according to the matrix fHgON/OFF
+  // for MC data     according to the histogram fHSigmaTheta
+  //
+  Double_t sigmabar_phot = 0;
+  Double_t sigmabar      = 0;
+  if (fType == "ON"  ||  fType == "OFF")
+  {
+    //Int_t nbinsx = hpad->GetNbinsX();
+    //for (Int_t i=1; i<=nbinsx; i++)
+    //{
+    //  if (hpad->GetBinContent(i) != 0.0)
+    //    *fLog << all << "i, fHg = " << i << ",  " << hpad->GetBinContent(i) 
+    //          << endl;
+    //}
+
+    sigmabar_phot = hpad->GetRandom();
+    sigmabar = sigmabar_phot * fPEperPhoton;
+
+    *fLog << all << "sigmabar_phot = " << sigmabar_phot << endl;
+
+    delete hpad;
+  }
+
+  else if (fType == "MC")
+  {
+    Int_t bincheck = fHSigmaTheta->GetXaxis()->FindBin(theta);
+
+    if (binTheta != bincheck)
+    {
+      cout << "The binnings of the 2 histograms are not identical; aborting"
+           << endl;
+      return kERROR;
+    }
+
+    TH1D *hsigma;
+
+    hsigma = fHSigmaTheta->ProjectionY("", binTheta, binTheta, "");
+    if ( hsigma->Integral() == 0.0 )
+    {
+      *fLog << warn << "Process(); projection for Theta bin " 
+            << binTheta << " has no entries; Skip event " << endl;
+      // event cannot be padded; skip event
+      delete hsigma;
+
+      rc = 3;
+      fErrors[rc]++;
+      return kCONTINUE;
+    }
+    else
+    {
+      sigmabar_phot = hsigma->GetRandom();
+      sigmabar = sigmabar_phot * fPEperPhoton;
+
+        *fLog << all << "Theta, bin number = " << theta << ",  " << binTheta
+	      << ",  sigmabar_phot = " << sigmabar_phot << endl;
+    }
+    delete hsigma;
+  }
+
+  const Double_t sigmabar2 = sigmabar*sigmabar;
+
+  //-------------------------------------------
+
+  *fLog << all << "Process(); sigbarold, sigmabar = " 
+        << sigbarold << ",  "<< sigmabar << endl;
+
+  // Skip event if target sigmabar is <= sigbarold
+  if (sigmabar <= sigbarold)
+  {
+    *fLog << all << "Process(); target sigmabar is less than sigbarold : "
+          << sigmabar << ",  " << sigbarold << ",   Skip event" << endl;
+
+    rc = 4;
+    fErrors[rc]++;
+    return kCONTINUE;     
+  }
+
+
+  //-------------------------------------------
+  //
+  // Calculate average number of NSB photo electrons to be added (lambdabar)
+  // from the value of sigmabar, 
+  //  - making assumptions about the average electronic noise (elNoise2) and
+  //  - using a fixed value (F2excess)  for the excess noise factor
+  
+  Double_t elNoise2;         // [photons]  
+  Double_t F2excess  = 1.3;
+  Double_t lambdabar;        // [photons]
+
+
+
+  Int_t bincheck = fHDiffPixTheta->GetXaxis()->FindBin(theta);
+  if (binTheta != bincheck)
+  {
+    cout << "The binnings of the 2 histograms are not identical; aborting"
+         << endl;
+    return kERROR;
+  }
+
+  // Get RMS of (Sigma^2-sigmabar^2) in this Theta bin.
+  // The average electronic noise (to be added) has to be well above this RMS,
+  // otherwise the electronic noise of an individual pixel (elNoise2Pix)
+  // may become negative
+
+  TH1D *hnoise;
+  if (fType == "MC")
+    hnoise = fHDiffPixTheta->ProjectionZ("", binTheta, binTheta, 0, 9999, "");
+  else if (fType == "ON")
+    hnoise = fHDiffPixThetaOFF->ProjectionZ("", binTheta, binTheta, 0, 9999, "");
+  else if (fType == "OFF")
+    hnoise = fHDiffPixThetaON->ProjectionZ("", binTheta, binTheta, 0, 9999, "");
+  else
+  {
+    *fLog << err << "Process; illegal data type... aborting" << endl;
+    return kERROR;
+  }
+
+  Double_t RMS_phot = hnoise->GetRMS(1);  
+  Double_t RMS = RMS_phot * fPEperPhoton * fPEperPhoton;
+  delete hnoise;
+
+  elNoise2 = TMath::Min(RMS,  sigmabar2 - sigbarold2);
+  *fLog << all << "elNoise2 = " << elNoise2 << endl; 
+
+  lambdabar = (sigmabar2 - sigbarold2 - elNoise2) / F2excess;     // [photo electrons]
+
+  // This value of lambdabar is the same for all pixels;
+  // note that lambdabar is normalized to the area of pixel 0
+
+  //----------   start loop over pixels   ---------------------------------
+  // do the padding for each pixel
+  //
+  // pad only pixels   - which are used (before image cleaning)
+  //
+  Double_t sig_phot    = 0;
+  Double_t sig         = 0;
+
+  Double_t sigma2      = 0;
+
+  Double_t diff_phot   = 0;
+  Double_t diff        = 0;
+
+  Double_t addSig2_phot= 0;
+  Double_t addSig2     = 0;
+
+  Double_t elNoise2Pix = 0;
+
+
+  for (UInt_t i=0; i<npix; i++) 
+  {   
+    MCerPhotPix &pix = (*fEvt)[i];
+    if ( !pix.IsPixelUsed() )
+      continue;
+
+    //if ( pix.GetNumPhotons() == 0.0)
+    //{
+    //  *fLog << warn << "Process(); no.of photons is 0 for used pixel" 
+    //        << endl;
+    //  continue;
+    //}
+
+    Int_t j = pix.GetPixId();
+
+    // GetPixRatio returns (area of pixel 0 / area of current pixel)
+    Double_t ratioArea = 1.0 / fCam->GetPixRatio(j);
+
+    MPedestalPix &ppix = (*fPed)[j];
+    Double_t oldsigma_phot = ppix.GetPedestalRms();
+    Double_t oldsigma = oldsigma_phot * fPEperPhoton;
+    Double_t oldsigma2 = oldsigma*oldsigma;
+
+    //---------------------------------
+    // throw the Sigma for this pixel 
+    //
+    Int_t binPixel = fHDiffPixTheta->GetYaxis()->FindBin( (Double_t)j );
+
+    Int_t count;
+    Bool_t ok;
+
+    TH1D *hdiff;
+    TH1D *hsig;
+
+    switch (fPadFlag)
+    {
+    case 1 :
+      // throw the Sigma for this pixel from the distribution fHDiffPixTheta
+
+      if (fType == "MC")
+        hdiff = fHDiffPixTheta->ProjectionZ("", binTheta, binTheta,
+                                                binPixel, binPixel, "");
+      else if (fType == "ON") 
+        hdiff = fHDiffPixThetaOFF->ProjectionZ("", binTheta, binTheta,
+                                                   binPixel, binPixel, "");
+      else 
+        hdiff = fHDiffPixThetaON->ProjectionZ("", binTheta, binTheta,
+                                                  binPixel, binPixel, "");
+
+     if ( hdiff->Integral() == 0 )
+      {
+        *fLog << warn << "Process(); projection for Theta bin " 
+              << binTheta << "  and pixel bin " << binPixel  
+              << " has no entries;  aborting " << endl;
+        delete hdiff;
+
+        rc = 5;
+        fErrors[rc]++;
+        return kCONTINUE;     
+      }
+
+      count = 0;
+      ok = kFALSE;
+      for (Int_t m=0; m<fIter; m++)
+      {
+        count += 1;
+        diff_phot = hdiff->GetRandom();
+        diff = diff_phot * fPEperPhoton * fPEperPhoton;
+ 
+       // the following condition ensures that elNoise2Pix > 0.0 
+        if ( (diff + sigmabar2 - oldsigma2/ratioArea
+                               - lambdabar*F2excess) > 0.0 )
+	{
+          ok = kTRUE;
+          break;
+	}
+      }
+      if (!ok)
+      {
+        *fLog << all << "theta, j, count, sigmabar, diff = " << theta 
+              << ",  " 
+              << j << ",  " << count << ",  " << sigmabar << ",  " 
+              << diff << endl;
+        diff = lambdabar*F2excess + oldsigma2/ratioArea - sigmabar2;
+
+        rw = 1;
+        fWarnings[rw]++;
+      }
+      else
+      {
+        rw = 0;
+        fWarnings[rw]++;
+      }
+
+      delete hdiff;
+      sigma2 = diff + sigmabar2;
+      break;
+
+    case 2 :
+      // throw the Sigma for this pixel from the distribution fHSigmaPixTheta
+
+      if (fType == "MC")
+        hsig = fHSigmaPixTheta->ProjectionZ("", binTheta, binTheta,
+                                                binPixel, binPixel, "");
+      else if (fType == "ON")
+        hsig = fHSigmaPixThetaOFF->ProjectionZ("", binTheta, binTheta,
+                                                   binPixel, binPixel, "");
+      else 
+        hsig = fHSigmaPixThetaON->ProjectionZ("", binTheta, binTheta,
+                                                  binPixel, binPixel, "");
+
+      if ( hsig->Integral() == 0 )
+      {
+        *fLog << warn << "Process(); projection for Theta bin " 
+              << binTheta << "  and pixel bin " << binPixel  
+              << " has no entries;  aborting " << endl;
+        delete hsig;
+
+        rc = 6;
+        fErrors[rc]++;
+        return kCONTINUE;     
+      }
+
+      count = 0;
+      ok = kFALSE;
+      for (Int_t m=0; m<fIter; m++)
+      {
+        count += 1;
+
+        sig_phot = hsig->GetRandom();
+        sig = sig_phot * fPEperPhoton;
+
+        sigma2 = sig*sig/ratioArea;
+        // the following condition ensures that elNoise2Pix > 0.0 
+
+        if ( (sigma2-oldsigma2/ratioArea-lambdabar*F2excess) > 0.0 )
+	{
+          ok = kTRUE;
+          break;
+	}
+      }
+      if (!ok)
+      {
+        *fLog << all << "theta, j, count, sigmabar, sig = " << theta 
+               << ",  " 
+              << j << ",  " << count << ",  " << sigmabar << ",  " 
+              << sig << endl;
+        sigma2 = lambdabar*F2excess + oldsigma2/ratioArea; 
+
+        rw = 1;
+        fWarnings[rw]++;
+      }
+      else
+      {
+        rw = 0;
+        fWarnings[rw]++;
+      }
+
+      delete hsig;
+      break;
+    }
+
+    //---------------------------------
+    // get the additional sigma^2 for this pixel (due to the padding)
+
+    addSig2 = sigma2*ratioArea - oldsigma2;
+    addSig2_phot = addSig2 / (fPEperPhoton * fPEperPhoton);
+
+    //---------------------------------
+    // get the additional electronic noise for this pixel
+
+    elNoise2Pix = addSig2 - lambdabar*F2excess*ratioArea;
+
+
+    //---------------------------------
+    // throw actual number of additional NSB photo electrons (NSB)
+    //       and its RMS (sigmaNSB) 
+
+    Double_t NSB0 = gRandom->Poisson(lambdabar*ratioArea);
+    Double_t arg  = NSB0*(F2excess-1.0) + elNoise2Pix;
+    Double_t sigmaNSB0;
+
+    if (arg >= 0.0)
+    {
+      sigmaNSB0 = sqrt( arg );
+    }
+    else
+    {
+      sigmaNSB0 = 0.0000001;      
+      if (arg < -1.e-10)
+      {
+        *fLog << err << "Process(); argument of sqrt < 0 : "
+              << arg << endl;
+      }
+    }
+
+
+    //---------------------------------
+    // smear NSB0 according to sigmaNSB0
+    // and subtract lambdabar because of AC coupling
+
+    Double_t NSB = gRandom->Gaus(NSB0, sigmaNSB0) - lambdabar*ratioArea;
+    Double_t NSB_phot = NSB / fPEperPhoton;
+
+    //---------------------------------
+ 
+    // add additional NSB to the number of photons
+    Double_t oldphotons_phot = pix.GetNumPhotons();
+    Double_t oldphotons = oldphotons_phot * fPEperPhoton;
+    Double_t newphotons = oldphotons + NSB;
+    Double_t newphotons_phot = newphotons / fPEperPhoton;;    
+    pix.SetNumPhotons(	newphotons_phot );
+
+
+    fHNSB->Fill( NSB_phot/ratioArea );
+    fHPhotons->Fill( oldphotons_phot/ratioArea, 
+                     newphotons_phot/ratioArea );
+
+
+    // error: add sigma of padded noise quadratically
+    Double_t olderror_phot = pix.GetErrorPhot();
+    Double_t newerror_phot = 
+                           sqrt( olderror_phot*olderror_phot + addSig2_phot );
+    pix.SetErrorPhot( newerror_phot );
+
+
+    Double_t newsigma = sqrt( oldsigma2 + addSig2 ); 
+    Double_t newsigma_phot = newsigma / fPEperPhoton;; 
+    ppix.SetPedestalRms( newsigma_phot );
+
+    fHSigmaPedestal->Fill( oldsigma_phot, newsigma_phot );
+  } 
+  //----------   end of loop over pixels   ---------------------------------
+
+  // Calculate sigmabar again and crosscheck
+
+  fSigmabar->Calc(*fCam, *fPed, *fEvt);
+  *fLog << all << "after padding : " << endl;
+  fSigmabar->Print("");
+
+  rc = 0;
+  fErrors[rc]++;
+  return kTRUE;
+  //******************************************************************
+}
+
+// --------------------------------------------------------------------------
+//
+//
+Int_t MPadONOFF::PostProcess()
+{
+    if (GetNumExecutions() != 0)
+    {
+
+    *fLog << inf << endl;
+    *fLog << GetDescriptor() << " execution statistics:" << endl;
+    *fLog << dec << setfill(' ');
+
+    int temp;
+    if (fWarnings[0] != 0.0)    
+      temp = (int)(fWarnings[1]*100/fWarnings[0]);
+    else
+      temp = 100;
+
+    *fLog << " " << setw(7) << fWarnings[1] << " (" << setw(3) 
+          << temp 
+          << "%) Warning : iteration to find acceptable sigma failed" 
+          << ", fIter = " << fIter << endl;
+
+    *fLog << " " << setw(7) << fErrors[1] << " (" << setw(3) 
+          << (int)(fErrors[1]*100/GetNumExecutions()) 
+          << "%) Evts skipped due to: Sigmabar_old > 0" << endl;
+
+    *fLog << " " << setw(7) << fErrors[2] << " (" << setw(3) 
+          << (int)(fErrors[2]*100/GetNumExecutions()) 
+          << "%) Evts skipped due to: Zenith angle out of range" << endl;
+
+    *fLog << " " << setw(7) << fErrors[3] << " (" << setw(3) 
+          << (int)(fErrors[3]*100/GetNumExecutions()) 
+          << "%) Evts skipped due to: No data for generating Sigmabar" << endl;
+
+    *fLog << " " << setw(7) << fErrors[4] << " (" << setw(3) 
+          << (int)(fErrors[4]*100/GetNumExecutions()) 
+          << "%) Evts skipped due to: Target sigma <= Sigmabar_old" << endl;
+
+    *fLog << " " << setw(7) << fErrors[5] << " (" << setw(3) 
+          << (int)(fErrors[5]*100/GetNumExecutions()) 
+          << "%) Evts skipped due to: No data for generating Sigma^2-Sigmabar^2" << endl;
+
+    *fLog << " " << setw(7) << fErrors[6] << " (" << setw(3) 
+          << (int)(fErrors[6]*100/GetNumExecutions()) 
+          << "%) Evts skipped due to: No data for generating Sigma" << endl;
+
+    *fLog << " " << setw(7) << fErrors[7] << " (" << setw(3) 
+          << (int)(fErrors[7]*100/GetNumExecutions()) 
+          << "%) Evts skipped due to: No data for generating Blind pixels" << endl;
+
+    *fLog << " " << setw(7) << fErrors[8] << " (" << setw(3) 
+          << (int)(fErrors[8]*100/GetNumExecutions()) 
+          << "%) Evts didn't have to be padded" << endl;
+
+    *fLog << " " << fErrors[0] << " (" 
+          << (int)(fErrors[0]*100/GetNumExecutions()) 
+          << "%) Evts were successfully padded!" << endl;
+    *fLog << endl;
+
+    }
+
+    //---------------------------------------------------------------
+    TCanvas &c = *(MH::MakeDefCanvas("PadONOFF", "", 900, 1200)); 
+    c.Divide(3, 4);
+    gROOT->SetSelectedPad(NULL);
+
+    c.cd(1);
+    fHNSB->SetDirectory(NULL);
+    fHNSB->DrawCopy();
+    fHNSB->SetBit(kCanDelete);    
+
+    c.cd(2);
+    fHSigmaPedestal->SetDirectory(NULL);
+    fHSigmaPedestal->DrawCopy();
+    fHSigmaPedestal->SetBit(kCanDelete);    
+
+    c.cd(3);
+    fHPhotons->SetDirectory(NULL);
+    fHPhotons->DrawCopy();
+    fHPhotons->SetBit(kCanDelete);    
+
+    //--------------------------------------------------------------------
+
+
+    c.cd(4);
+    fHSigmaTheta->SetDirectory(NULL);
+    fHSigmaTheta->SetTitle("(Target) 2D : Sigmabar, \\Theta");
+    fHSigmaTheta->DrawCopy();     
+    fHSigmaTheta->SetBit(kCanDelete);     
+
+
+    //--------------------------------------------------------------------
+
+
+    c.cd(7);
+    fHBlindPixNTheta->SetDirectory(NULL);
+    fHBlindPixNTheta->SetTitle("(Target) 2D : no.of blind pixels, \\Theta");
+    fHBlindPixNTheta->DrawCopy();     
+    fHBlindPixNTheta->SetBit(kCanDelete);     
+
+    //--------------------------------------------------------------------
+
+
+    c.cd(10);
+    fHBlindPixIdTheta->SetDirectory(NULL);
+    fHBlindPixIdTheta->SetTitle("(Target) 2D : blind pixel Id, \\Theta");
+    fHBlindPixIdTheta->DrawCopy();     
+    fHBlindPixIdTheta->SetBit(kCanDelete);     
+
+
+    //--------------------------------------------------------------------
+    // draw the 3D histogram (target): Theta, pixel, Sigma^2-Sigmabar^2
+
+    c.cd(5);
+    TH2D *l1;
+    l1 = (TH2D*) ((TH3*)fHDiffPixTheta)->Project3D("zx");
+    l1->SetDirectory(NULL);
+    l1->SetTitle("(Target) Sigma^2-Sigmabar^2 vs. \\Theta (all pixels)");
+    l1->SetXTitle("\\Theta [\\circ]");
+    l1->SetYTitle("Sigma^2-Sigmabar^2");
+
+    l1->DrawCopy("box");
+    l1->SetBit(kCanDelete);;
+
+    c.cd(8);
+    TH2D *l2;
+    l2 = (TH2D*) ((TH3*)fHDiffPixTheta)->Project3D("zy");
+    l2->SetDirectory(NULL);
+    l2->SetTitle("(Target) Sigma^2-Sigmabar^2 vs. pixel number (all \\Theta)");
+    l2->SetXTitle("pixel");
+    l2->SetYTitle("Sigma^2-Sigmabar^2");
+
+    l2->DrawCopy("box");
+    l2->SetBit(kCanDelete);;
+
+    //--------------------------------------------------------------------
+    // draw the 3D histogram (target): Theta, pixel, Sigma
+
+    c.cd(6);
+    TH2D *k1;
+    k1 = (TH2D*) ((TH3*)fHSigmaPixTheta)->Project3D("zx");
+    k1->SetDirectory(NULL);
+    k1->SetTitle("(Target) Sigma vs. \\Theta (all pixels)");
+    k1->SetXTitle("\\Theta [\\circ]");
+    k1->SetYTitle("Sigma");
+
+    k1->DrawCopy("box");
+    k1->SetBit(kCanDelete);
+
+    c.cd(9);
+    TH2D *k2;
+    k2 = (TH2D*) ((TH3*)fHSigmaPixTheta)->Project3D("zy");
+    k2->SetDirectory(NULL);
+    k2->SetTitle("(Target) Sigma vs. pixel number (all \\Theta)");
+    k2->SetXTitle("pixel");
+    k2->SetYTitle("Sigma");
+
+    k2->DrawCopy("box");
+    k2->SetBit(kCanDelete);;
+
+
+    //--------------------------------------------------------------------
+
+    c.cd(11);
+    TH2D *m1;
+    m1 = (TH2D*) ((TH3*)fHgON)->Project3D("zy");
+    m1->SetDirectory(NULL);
+    m1->SetTitle("(Target) Sigmabar-new vs. Sigmabar-old (ON, all  \\Theta)");
+    m1->SetXTitle("Sigmabar-old");
+    m1->SetYTitle("Sigmabar-new");
+
+    m1->DrawCopy("box");
+    m1->SetBit(kCanDelete);;
+
+    c.cd(12);
+    TH2D *m2;
+    m2 = (TH2D*) ((TH3*)fHgOFF)->Project3D("zy");
+    m2->SetDirectory(NULL);
+    m2->SetTitle("(Target) Sigmabar-new vs. Sigmabar-old (OFF, all  \\Theta)");
+    m2->SetXTitle("Sigmabar-old");
+    m2->SetYTitle("Sigmabar-new");
+
+    m2->DrawCopy("box");
+    m2->SetBit(kCanDelete);;
+
+
+  return kTRUE;
+}
+
+// --------------------------------------------------------------------------
+
+
+
+
+
+
Index: trunk/MagicSoft/Mars/manalysis/MPadONOFF.h
===================================================================
--- trunk/MagicSoft/Mars/manalysis/MPadONOFF.h	(revision 2663)
+++ trunk/MagicSoft/Mars/manalysis/MPadONOFF.h	(revision 2663)
@@ -0,0 +1,105 @@
+#ifndef MARS_MPadONOFF
+#define MARS_MPadONOFF
+
+#ifndef MARS_MTask
+#include "MTask.h"
+#endif
+
+#ifndef MARS_MH
+#include "MH.h"
+#endif
+
+class TH1D;
+class TH2D;
+class TH3D;
+
+class MGeomCam;
+class MCerPhotEvt;
+class MPedestalCam;
+class MMcEvt;
+class MSigmabar;
+class MParList;
+class MBlindPixels;
+class MRead;
+class MFilterList;
+
+
+class MPadONOFF : public MTask
+{
+private:
+    MGeomCam       *fCam;
+    MCerPhotEvt    *fEvt; 
+    MSigmabar      *fSigmabar;
+    MMcEvt         *fMcEvt;
+    MPedestalCam   *fPed;
+    MBlindPixels   *fBlinds;
+
+    TString        fType;           // type of data to be padded
+    TFile          *fInfile;        // input file containing padding histograms
+
+    Int_t          fPadFlag;
+    Int_t          fIter;
+
+    Int_t          fErrors[9];
+    Int_t          fWarnings[2];
+
+
+    // plots used for the padding
+    // for all plots it is assumed that the pedestal RMS is given in units of "number of photons"
+    TH2D           *fHBlindPixIdTheta; // 2D-histogram (blind pixel Id vs. Theta)
+    TH2D           *fHBlindPixNTheta; // 2D-histogram (no.of blind pixels vs. Theta)
+
+    TH2D           *fHSigmaTheta;       // 2D-histogram (sigmabar vs. Theta)
+    TH2D           *fHSigmaThetaON;     // 2D-histogram (sigmabar vs. Theta)
+    TH2D           *fHSigmaThetaOFF;    // 2D-histogram (sigmabar vs. Theta)
+
+    TH3D           *fHSigmaPixTheta;    // 3D-histogram (Theta, pixel, sigma)
+    TH3D           *fHSigmaPixThetaON;  // 3D-histogram (Theta, pixel, sigma)
+    TH3D           *fHSigmaPixThetaOFF; // 3D-histogram (Theta, pixel, sigma)
+
+    TH3D           *fHDiffPixTheta;     // 3D-histogram (Theta, pixel, sigma^2-sigmabar^2)
+    TH3D           *fHDiffPixThetaON;   // 3D-histogram (Theta, pixel, sigma^2-sigmabar^2)
+    TH3D           *fHDiffPixThetaOFF;  // 3D-histogram (Theta, pixel, sigma^2-sigmabar^2)
+
+    TH3D           *fHgON;           // matrix (Theta, sigbarold, sigbarnew) for ON data
+    TH3D           *fHgOFF;          // matrix (Theta, sigbarold, sigbarnew) for OFF data
+
+    // plots for checking the padding
+    TH2D           *fHSigmaPedestal; // 2D-histogram : pedestal sigma after
+                                     //                versus before padding
+    TH2D           *fHPhotons;       // 2D-histogram : no.of photons after
+                                     //                versus before padding
+    TH1D           *fHNSB;           // 1D-histogram : additional NSB
+
+
+public:
+    MPadONOFF(const char *name=NULL, const char *title=NULL);
+    ~MPadONOFF();
+
+    Bool_t MergeHistograms(TH2D *sigthon,     TH2D *sigthoff,
+                           TH3D *sigpixthon,  TH3D *sigpixthoff,
+                           TH3D *diffpixthon, TH3D *diffpixthoff,
+                           TH2D *blindidthon, TH2D *blindidthoff,
+                           TH2D *blindnthon,  TH2D *blindnthoff);
+
+    Bool_t ReadTargetDist(const char *filein);
+    Bool_t WriteTargetDist(const char *fileout);
+
+    void SetDataType(const char *type);   // type of data to be padded
+
+    Int_t PreProcess(MParList *pList);
+    Int_t Process();
+    Int_t PostProcess();
+    
+    void SetPadFlag(Int_t padflag);
+
+    ClassDef(MPadONOFF, 0)    // task for the ON-OFF padding 
+}; 
+
+#endif
+
+
+
+
+
+
Index: trunk/MagicSoft/Mars/manalysis/MPedestalWorkaround.cc
===================================================================
--- trunk/MagicSoft/Mars/manalysis/MPedestalWorkaround.cc	(revision 2663)
+++ trunk/MagicSoft/Mars/manalysis/MPedestalWorkaround.cc	(revision 2663)
@@ -0,0 +1,114 @@
+/* ======================================================================== *\
+!
+! *
+! * This file is part of MARS, the MAGIC Analysis and Reconstruction
+! * Software. It is distributed to you in the hope that it can be a useful
+! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
+! * It is distributed WITHOUT ANY WARRANTY.
+! *
+! * Permission to use, copy, modify and distribute this software and its
+! * documentation for any purpose is hereby granted without fee,
+! * provided that the above copyright notice appear in all copies and
+! * that both that copyright notice and this permission notice appear
+! * in supporting documentation. It is provided "as is" without express
+! * or implied warranty.
+! *
+!
+!
+!   Author(s): Sabrina Stark  12/2003 <mailto:lstark@particle.phys.ethz.ch>
+!
+!   Copyright: MAGIC Software Development, 2000-2003
+!
+!
+\* ======================================================================== */
+
+/////////////////////////////////////////////////////////////////////////////
+//                                                                         //
+// MPedestalWorkaround                                                     //
+//                                                                         //
+// This class contains the function to store the pedestal value and the    //
+//  RMS of the pedestal in units of photons.                               //  
+//                                                                         //
+/////////////////////////////////////////////////////////////////////////////
+#include "MPedestalWorkaround.h"
+
+#include <stdio.h>
+#include "MLog.h"
+#include "MLogManip.h"
+#include "MParList.h"
+#include "MGeomCam.h"
+
+#include "MPedestalCam.h"
+#include "MPedestalPix.h"
+#include "MPedPhotCam.h"
+
+using namespace std;
+
+ClassImp(MPedestalWorkaround);
+
+MPedestalWorkaround::MPedestalWorkaround(const char *name, const char *title)
+{
+    fName = name ? name : "MPedestalWorkaround";
+    fTitle = title ? title : "Storage of pedestal values and RMS in units of photons";
+   
+}
+
+// ------------------------------------------------------------------------
+//
+
+Int_t MPedestalWorkaround::PreProcess(MParList *pList)
+{
+   fPed = (MPedestalCam*)pList->FindObject("MPedestalCam");
+   if (!fPed)
+     {
+       *fLog << err << "MPedestalCam not found... aborting." << endl;
+       return kFALSE;
+     }
+   fPedPhot = (MPedPhotCam*)pList->FindObject("MPedPhotCam");
+   if (!fPedPhot)
+     {
+       *fLog << err << "MPedPhotCam not found... aborting." << endl;
+       return kFALSE;
+     }
+   fCam = (MGeomCam*)pList->FindObject("MGeomCam");
+   if (!fCam)
+     {
+       *fLog << err << "MGeomCam not found (no geometry information available)... aborting." << endl;
+       return kFALSE;
+     }
+
+    return kTRUE;
+}
+
+// ------------------------------------------------------------------------
+//
+Int_t MPedestalWorkaround::Process()
+{
+   
+ UInt_t imaxnumpix = fCam->GetNumPixels();
+
+  for (UInt_t i=0; i<imaxnumpix; i++)
+  {
+    Int_t type = 0;
+    Double_t val;
+    Float_t valout;
+    fPedPhot->GetPixelContent( val, i, *fCam, type);
+    valout = (*fPed)[i].GetPedestal();
+    (*fPed)[i].SetPedestal(val);
+    *fLog << "i, val, valout : " << i <<",  "<<  val<<",  " << valout << endl;
+    type = 1;
+    fPedPhot->GetPixelContent( val, i, *fCam, type);
+    valout = (*fPed)[i].GetPedestalRms();
+    (*fPed)[i].SetPedestalRms(val);
+    *fLog << "RMS : i, val, valout : " << i <<",  "<<  val<<",  " << valout << endl;
+  }
+
+
+    return kTRUE;
+}
+
+Int_t MPedestalWorkaround::PostProcess()
+{
+    return kTRUE;
+}
+
Index: trunk/MagicSoft/Mars/manalysis/MPedestalWorkaround.h
===================================================================
--- trunk/MagicSoft/Mars/manalysis/MPedestalWorkaround.h	(revision 2663)
+++ trunk/MagicSoft/Mars/manalysis/MPedestalWorkaround.h	(revision 2663)
@@ -0,0 +1,44 @@
+#ifndef MARS_MPedestalWorkaround
+#define MARS_MPedestalWorkaround
+
+/////////////////////////////////////////////////////////////////////////////
+//                                                                         //
+// MPedestalWorkaround                                                     //
+//                                                                         //
+// Temporary copy of pedestal values and RMS into MPedestalCam from        //
+// MPedPhotCam in order to have the pedestal RMS in units of number of     // 
+// photons                                                                  //
+//                                                                         //
+/////////////////////////////////////////////////////////////////////////////
+#ifndef MARS_MTask
+#include "MTask.h"
+#endif
+
+class MPedestalCam;
+class MPedPhotCam;
+class MGeomCam;
+class MParList;
+
+
+class MPedestalWorkaround : public MTask 
+{
+private:
+
+    MPedestalCam *fPed;  //
+    MPedPhotCam *fPedPhot; //
+    MGeomCam *fCam;    //
+
+    Int_t PreProcess(MParList *pList);
+    Int_t Process();
+    Int_t PostProcess();
+
+public:
+    MPedestalWorkaround(const char *name=NULL, const char *title=NULL);
+
+    ClassDef(MPedestalWorkaround, 0) // Task to copy pedestal RMS
+};
+
+#endif
+
+
+
Index: trunk/MagicSoft/Mars/manalysis/MSupercuts.cc
===================================================================
--- trunk/MagicSoft/Mars/manalysis/MSupercuts.cc	(revision 2663)
+++ trunk/MagicSoft/Mars/manalysis/MSupercuts.cc	(revision 2663)
@@ -0,0 +1,388 @@
+/* ======================================================================== *\
+!
+! *
+! * This file is part of MARS, the MAGIC Analysis and Reconstruction
+! * Software. It is distributed to you in the hope that it can be a useful
+! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
+! * It is distributed WITHOUT ANY WARRANTY.
+! *
+! * Permission to use, copy, modify and distribute this software and its
+! * documentation for any purpose is hereby granted without fee,
+! * provided that the above copyright notice appear in all copies and
+! * that both that copyright notice and this permission notice appear
+! * in supporting documentation. It is provided "as is" without express
+! * or implied warranty.
+! *
+!
+!
+!   Author(s): Wolfgang Wittek, 08/2003 <mailto:wittek@mppmu.mpg.de>
+!   Author(s): Thomas Bretz, 08/2003 <mailto:tbretz@astro.uni-wuerzburg.de>
+!
+!   Copyright: MAGIC Software Development, 2000-2003
+!
+!
+\* ======================================================================== */
+
+/////////////////////////////////////////////////////////////////////////////
+//                                                                         //
+//   MSupercuts                                                         //
+//                                                                         //
+//   this is the container for the parameters of the supercuts             //
+//                                                                         //
+/////////////////////////////////////////////////////////////////////////////
+#include "MSupercuts.h"
+
+#include <math.h>
+#include <fstream>
+
+#include "MParList.h"
+
+#include "MLog.h"
+#include "MLogManip.h"
+
+ClassImp(MSupercuts);
+
+using namespace std;
+
+// --------------------------------------------------------------------------
+//
+// constructor
+//
+MSupercuts::MSupercuts(const char *name, const char *title)
+  : fParameters(104), fStepsizes(104),
+    fLengthUp(fParameters.GetArray()),   fLengthLo(fParameters.GetArray()+8),
+    fWidthUp(fParameters.GetArray()+16), fWidthLo(fParameters.GetArray()+24),
+    fDistUp(fParameters.GetArray()+32),  fDistLo(fParameters.GetArray()+40),
+    fAsymUp(fParameters.GetArray()+48),  fAsymLo(fParameters.GetArray()+56),
+    fConcUp(fParameters.GetArray()+64),  fConcLo(fParameters.GetArray()+72),
+    fLeakage1Up(fParameters.GetArray()+80), fLeakage1Lo(fParameters.GetArray()+88),
+    fAlphaUp(fParameters.GetArray()+96)
+{
+    fName  = name  ? name  : "MSupercuts";
+    fTitle = title ? title : "Container for the supercut parameters";
+
+    // set supercut parameters to their default values
+    InitParameters();
+}
+
+
+// --------------------------------------------------------------------------
+//
+// set default values for the supercut parameters
+//
+void MSupercuts::InitParameters()
+{
+    //---------------------------------------------------
+    //  these are Daniel's original values for Mkn 421
+
+    fLengthUp[0] =  0.315585;
+    fLengthUp[1] =  0.001455;
+    fLengthUp[2] =  0.203198;
+    fLengthUp[3] =  0.005532;
+    fLengthUp[4] = -0.001670;
+    fLengthUp[5] = -0.020362;
+    fLengthUp[6] =  0.007388;
+    fLengthUp[7] = -0.013463;
+
+    fLengthLo[0] =  0.151530;
+    fLengthLo[1] =  0.028323;
+    fLengthLo[2] =  0.510707;
+    fLengthLo[3] =  0.053089;
+    fLengthLo[4] =  0.013708;
+    fLengthLo[5] =  2.357993;
+    fLengthLo[6] =  0.000080;
+    fLengthLo[7] = -0.007157;
+
+    fWidthUp[0] =  0.145412;
+    fWidthUp[1] = -0.001771;
+    fWidthUp[2] =  0.054462;
+    fWidthUp[3] =  0.022280;
+    fWidthUp[4] = -0.009893;
+    fWidthUp[5] =  0.056353;
+    fWidthUp[6] =  0.020711;
+    fWidthUp[7] = -0.016703;
+
+    fWidthLo[0] =  0.089187;
+    fWidthLo[1] = -0.006430;
+    fWidthLo[2] =  0.074442;
+    fWidthLo[3] =  0.003738;
+    fWidthLo[4] = -0.004256;
+    fWidthLo[5] = -0.014101;
+    fWidthLo[6] =  0.006126;
+    fWidthLo[7] = -0.002849;
+
+    fDistUp[0] =  1.787943;
+    fDistUp[1] =  0;
+    fDistUp[2] =  2.942310;
+    fDistUp[3] =  0.199815;
+    fDistUp[4] =  0;
+    fDistUp[5] =  0.249909;
+    fDistUp[6] =  0.189697;
+    fDistUp[7] =  0;
+
+    fDistLo[0] =  0.589406;
+    fDistLo[1] =  0;
+    fDistLo[2] = -0.083964;
+    fDistLo[3] = -0.007975;
+    fDistLo[4] =  0;
+    fDistLo[5] =  0.045374;
+    fDistLo[6] = -0.001750;
+    fDistLo[7] =  0;
+    
+
+    // dummy values
+
+    fAsymUp[0] =  1.e10;
+    fAsymUp[1] =  0.0;
+    fAsymUp[2] =  0.0;
+    fAsymUp[3] =  0.0;
+    fAsymUp[4] =  0.0;
+    fAsymUp[5] =  0.0;
+    fAsymUp[6] =  0.0;
+    fAsymUp[7] =  0.0;
+
+    fAsymLo[0] = -1.e10;
+    fAsymLo[1] =  0.0;
+    fAsymLo[2] =  0.0;
+    fAsymLo[3] =  0.0;
+    fAsymLo[4] =  0.0;
+    fAsymLo[5] =  0.0;
+    fAsymLo[6] =  0.0;
+    fAsymLo[7] =  0.0;
+
+    fConcUp[0] =  1.e10;
+    fConcUp[1] =  0.0;
+    fConcUp[2] =  0.0;
+    fConcUp[3] =  0.0;
+    fConcUp[4] =  0.0;
+    fConcUp[5] =  0.0;
+    fConcUp[6] =  0.0;
+    fConcUp[7] =  0.0;
+
+    fConcLo[0] = -1.e10;
+    fConcLo[1] =  0.0;
+    fConcLo[2] =  0.0;
+    fConcLo[3] =  0.0;
+    fConcLo[4] =  0.0;
+    fConcLo[5] =  0.0;
+    fConcLo[6] =  0.0;
+    fConcLo[7] =  0.0;
+
+    fLeakage1Up[0] =  1.e10;
+    fLeakage1Up[1] =  0.0;
+    fLeakage1Up[2] =  0.0;
+    fLeakage1Up[3] =  0.0;
+    fLeakage1Up[4] =  0.0;
+    fLeakage1Up[5] =  0.0;
+    fLeakage1Up[6] =  0.0;
+    fLeakage1Up[7] =  0.0;
+
+    fLeakage1Lo[0] = -1.e10;
+    fLeakage1Lo[1] =  0.0;
+    fLeakage1Lo[2] =  0.0;
+    fLeakage1Lo[3] =  0.0;
+    fLeakage1Lo[4] =  0.0;
+    fLeakage1Lo[5] =  0.0;
+    fLeakage1Lo[6] =  0.0;
+    fLeakage1Lo[7] =  0.0;
+
+    fAlphaUp[0] = 13.123440; 
+    fAlphaUp[1] = 0;
+    fAlphaUp[2] = 0;
+    fAlphaUp[3] = 0;
+    fAlphaUp[4] = 0;
+    fAlphaUp[5] = 0;
+    fAlphaUp[6] = 0;
+    fAlphaUp[7] = 0;
+
+    //---------------------------------------------------
+    // fStepsizes 
+    // if == 0.0    the parameter will be fixed in the minimization
+    //    != 0.0    initial step sizes for the parameters
+
+    // LengthUp
+    fStepsizes[0] = 0.03;
+    fStepsizes[1] = 0.0002;
+    fStepsizes[2] = 0.02;
+    fStepsizes[3] = 0.0006;
+    fStepsizes[4] = 0.0002;
+    fStepsizes[5] = 0.002;
+    fStepsizes[6] = 0.0008;
+    fStepsizes[7] = 0.002;
+
+    // LengthLo
+    fStepsizes[8]  = 0.02;
+    fStepsizes[9]  = 0.003;
+    fStepsizes[10] = 0.05;
+    fStepsizes[11] = 0.006;
+    fStepsizes[12] = 0.002;
+    fStepsizes[13] = 0.3;
+    fStepsizes[14] = 0.0001;
+    fStepsizes[15] = 0.0008;
+
+    // WidthUp
+    fStepsizes[16] = 0.02;
+    fStepsizes[17] = 0.0002;
+    fStepsizes[18] = 0.006;
+    fStepsizes[19] = 0.003;
+    fStepsizes[20] = 0.002;
+    fStepsizes[21] = 0.006;
+    fStepsizes[22] = 0.002;
+    fStepsizes[23] = 0.002;
+
+    // WidthLo
+    fStepsizes[24] = 0.009;
+    fStepsizes[25] = 0.0007;
+    fStepsizes[26] = 0.008;
+    fStepsizes[27] = 0.0004;
+    fStepsizes[28] = 0.0005;
+    fStepsizes[29] = 0.002;
+    fStepsizes[30] = 0.0007;
+    fStepsizes[31] = 0.003;
+
+    // DistUp
+    fStepsizes[32] = 0.2;
+    fStepsizes[33] = 0.0;
+    fStepsizes[34] = 0.3;
+    fStepsizes[35] = 0.02;
+    fStepsizes[36] = 0.0;
+    fStepsizes[37] = 0.03;
+    fStepsizes[38] = 0.02;
+    fStepsizes[39] = 0.0;
+
+    // DistLo
+    fStepsizes[40] = 0.06;
+    fStepsizes[41] = 0.0;
+    fStepsizes[42] = 0.009;
+    fStepsizes[43] = 0.0008;
+    fStepsizes[44] = 0.0;
+    fStepsizes[45] = 0.005;
+    fStepsizes[46] = 0.0002;
+    fStepsizes[47] = 0.0;
+
+    // AsymUp
+    fStepsizes[48] = 0.0;
+    fStepsizes[49] = 0.0;
+    fStepsizes[50] = 0.0;
+    fStepsizes[51] = 0.0;
+    fStepsizes[52] = 0.0;
+    fStepsizes[53] = 0.0;
+    fStepsizes[54] = 0.0;
+    fStepsizes[55] = 0.0;
+
+    // AsymLo
+    fStepsizes[56] = 0.0;
+    fStepsizes[57] = 0.0;
+    fStepsizes[58] = 0.0;
+    fStepsizes[59] = 0.0;
+    fStepsizes[60] = 0.0;
+    fStepsizes[61] = 0.0;
+    fStepsizes[62] = 0.0;
+    fStepsizes[63] = 0.0;
+
+    // ConcUp
+    fStepsizes[64] = 0.0;
+    fStepsizes[65] = 0.0;
+    fStepsizes[66] = 0.0;
+    fStepsizes[67] = 0.0;
+    fStepsizes[68] = 0.0;
+    fStepsizes[69] = 0.0;
+    fStepsizes[70] = 0.0;
+    fStepsizes[71] = 0.0;
+
+    // ConcLo
+    fStepsizes[72] = 0.0;
+    fStepsizes[73] = 0.0;
+    fStepsizes[74] = 0.0;
+    fStepsizes[75] = 0.0;
+    fStepsizes[76] = 0.0;
+    fStepsizes[77] = 0.0;
+    fStepsizes[78] = 0.0;
+    fStepsizes[79] = 0.0;
+
+    // Leakage1Up
+    fStepsizes[80] = 0.0;
+    fStepsizes[81] = 0.0;
+    fStepsizes[82] = 0.0;
+    fStepsizes[83] = 0.0;
+    fStepsizes[84] = 0.0;
+    fStepsizes[85] = 0.0;
+    fStepsizes[86] = 0.0;
+    fStepsizes[87] = 0.0;
+
+    // Leakage1Lo
+    fStepsizes[88] = 0.0;
+    fStepsizes[89] = 0.0;
+    fStepsizes[90] = 0.0;
+    fStepsizes[91] = 0.0;
+    fStepsizes[92] = 0.0;
+    fStepsizes[93] = 0.0;
+    fStepsizes[94] = 0.0;
+    fStepsizes[95] = 0.0;
+
+    // AlphaUp
+    fStepsizes[96]  = 0.0;
+    fStepsizes[97]  = 0.0;
+    fStepsizes[98]  = 0.0;
+    fStepsizes[99]  = 0.0;
+    fStepsizes[100] = 0.0;
+    fStepsizes[101] = 0.0;
+    fStepsizes[102] = 0.0;
+    fStepsizes[103] = 0.0;
+}
+
+
+// --------------------------------------------------------------------------
+//
+// Set the parameter values from the array 'd'
+//
+//
+Bool_t MSupercuts::SetParameters(const TArrayD &d)
+{
+    if (d.GetSize() != fParameters.GetSize())
+    {
+        *fLog << err << "Sizes of d and of fParameters are different : "
+              << d.GetSize() << ",  " << fParameters.GetSize() << endl;
+        return kFALSE;
+    }
+
+    fParameters = d;
+
+    return kTRUE;
+}
+
+// --------------------------------------------------------------------------
+//
+// Set the step sizes from the array 'd'
+//
+//
+Bool_t MSupercuts::SetStepsizes(const TArrayD &d)
+{
+    if (d.GetSize() != fStepsizes.GetSize())
+    {
+        *fLog << err << "Sizes of d and of fStepsizes are different : "
+              << d.GetSize() << ",  " << fStepsizes.GetSize() << endl;
+        return kFALSE;
+    }
+
+    fStepsizes = d;
+
+    return kTRUE;
+}
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Index: trunk/MagicSoft/Mars/manalysis/MSupercuts.h
===================================================================
--- trunk/MagicSoft/Mars/manalysis/MSupercuts.h	(revision 2663)
+++ trunk/MagicSoft/Mars/manalysis/MSupercuts.h	(revision 2663)
@@ -0,0 +1,69 @@
+#ifndef MARS_MSupercuts
+#define MARS_MSupercuts
+
+#ifndef MARS_MParContainer
+#include "MParContainer.h"
+#endif
+
+#ifndef ROOT_TArrayD
+#include <TArrayD.h>
+#endif
+
+class MSupercuts : public MParContainer
+{
+private:
+    TArrayD fParameters; // supercut parameters
+    TArrayD fStepsizes;  // step sizes of supercut parameters
+
+    Double_t *fLengthUp; //!
+    Double_t *fLengthLo; //!
+    Double_t *fWidthUp;  //!
+    Double_t *fWidthLo;  //!
+    Double_t *fDistUp;   //!
+    Double_t *fDistLo;   //!
+    Double_t *fAsymUp;   //!
+    Double_t *fAsymLo;   //!
+
+    Double_t *fConcUp;   //!
+    Double_t *fConcLo;   //!
+    Double_t *fLeakage1Up;   //!
+    Double_t *fLeakage1Lo;   //!
+
+    Double_t *fAlphaUp;  //!
+
+
+public:
+    MSupercuts(const char *name=NULL, const char *title=NULL);
+
+    void InitParameters();
+
+    Bool_t SetParameters(const TArrayD &d);
+    Bool_t SetStepsizes(const TArrayD &d);
+
+    const TArrayD &GetParameters() const { return fParameters; }
+    const TArrayD &GetStepsizes()  const { return fStepsizes;  }
+
+    const Double_t *GetLengthUp() const { return fLengthUp; }
+    const Double_t *GetLengthLo() const { return fLengthLo; }
+    const Double_t *GetWidthUp() const  { return fWidthUp; }
+    const Double_t *GetWidthLo() const  { return fWidthLo; }
+    const Double_t *GetDistUp() const   { return fDistUp; }
+    const Double_t *GetDistLo() const   { return fDistLo; }
+    const Double_t *GetAsymUp() const   { return fAsymUp; }
+    const Double_t *GetAsymLo() const   { return fAsymLo; }
+
+    const Double_t *GetConcUp() const   { return fConcUp; }
+    const Double_t *GetConcLo() const   { return fConcLo; }
+
+    const Double_t *GetLeakage1Up() const   { return fLeakage1Up; }
+    const Double_t *GetLeakage1Lo() const   { return fLeakage1Lo; }
+
+    const Double_t *GetAlphaUp() const  { return fAlphaUp; }
+
+    ClassDef(MSupercuts, 1) // A container for the Supercut parameters
+};
+
+#endif
+
+
+
Index: trunk/MagicSoft/Mars/manalysis/MSupercutsCalc.cc
===================================================================
--- trunk/MagicSoft/Mars/manalysis/MSupercutsCalc.cc	(revision 2663)
+++ trunk/MagicSoft/Mars/manalysis/MSupercutsCalc.cc	(revision 2663)
@@ -0,0 +1,348 @@
+/* ======================================================================== *\
+!
+! *
+! * This file is part of MARS, the MAGIC Analysis and Reconstruction
+! * Software. It is distributed to you in the hope that it can be a useful
+! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
+! * It is distributed WITHOUT ANY WARRANTY.
+! *
+! * Permission to use, copy, modify and distribute this software and its
+! * documentation for any purpose is hereby granted without fee,
+! * provided that the above copyright notice appear in all copies and
+! * that both that copyright notice and this permission notice appear
+! * in supporting documentation. It is provided "as is" without express
+! * or implied warranty.
+! *
+!
+!
+!   Author(s): Wolfgang Wittek, 04/2003 <mailto:wittek@mppmu.mpg.de>
+!
+!   Copyright: MAGIC Software Development, 2000-2003
+!
+!
+\* ======================================================================== */
+
+/////////////////////////////////////////////////////////////////////////////
+//                                                                         //
+//   MSupercutsCalc                                                     //
+//                                                                         //
+//   this class calculates the hadronness for the supercuts                //
+//   the parameters of the supercuts are taken                             //
+//                  from the container MSupercuts                       //
+//                                                                         //
+//                                                                         //
+/////////////////////////////////////////////////////////////////////////////
+#include "MSupercutsCalc.h"
+
+#include <math.h>
+#include <fstream>
+
+#include "TFile.h"
+#include "TArrayD.h"
+
+#include "MParList.h"
+#include "MHillasExt.h"
+#include "MHillasSrc.h"
+#include "MNewImagePar.h"
+#include "MMcEvt.hxx"
+#include "MCerPhotEvt.h"
+#include "MGeomCam.h"
+#include "MHadronness.h"
+#include "MHMatrix.h"
+#include "MSupercuts.h"
+
+#include "MLog.h"
+#include "MLogManip.h"
+
+ClassImp(MSupercutsCalc);
+
+using namespace std;
+
+
+// --------------------------------------------------------------------------
+//
+// constructor
+//
+
+MSupercutsCalc::MSupercutsCalc(const char *hilname, 
+                                     const char *hilsrcname, 
+                                     const char *name, const char *title)
+  : fHadronnessName("MHadronness"), fHilName(hilname), fHilSrcName(hilsrcname),
+    fHilExtName("MHillasExt"), fNewParName("MNewImagePar"), 
+    fSuperName("MSupercuts") 
+{
+    fName  = name  ? name  : "MSupercutsCalc";
+    fTitle = title ? title : "Class to evaluate the Supercuts";
+
+    fMatrix = NULL;
+}
+
+// --------------------------------------------------------------------------
+//
+Int_t MSupercutsCalc::PreProcess(MParList *pList)
+{
+    MGeomCam *cam = (MGeomCam*)pList->FindObject("MGeomCam");
+    if (!cam)
+    {
+        *fLog << err << "MGeomCam (Camera Geometry) not found... aborting." << endl;
+        return kFALSE;
+    }
+
+    fMm2Deg = cam->GetConvMm2Deg();
+
+    fHadronness = (MHadronness*)pList->FindCreateObj("MHadronness", fHadronnessName);
+    if (!fHadronness)
+    {
+        *fLog << err << fHadronnessName << " [MHadronness] not found... aborting." << endl;
+        return kFALSE;
+    }
+
+    fSuper = (MSupercuts*)pList->FindObject(fSuperName, "MSupercuts");
+    if (!fSuper)
+    {
+        *fLog << err << fSuperName << " [MSupercuts] not found... aborting." << endl;
+        return kFALSE;
+    }
+
+    if (fMatrix)
+        return kTRUE;
+
+    //-----------------------------------------------------------
+    fHil = (MHillas*)pList->FindObject(fHilName, "MHillas");
+    if (!fHil)
+    {
+        *fLog << err << fHilName << " [MHillas] not found... aborting." << endl;
+        return kFALSE;
+    }
+
+    fHilExt = (MHillasExt*)pList->FindObject(fHilExtName, "MHillasExt");
+    if (!fHilExt)
+    {
+        *fLog << err << fHilExtName << " [MHillasExt] not found... aborting." << endl;
+        return kFALSE;
+    }
+
+    fHilSrc = (MHillasSrc*)pList->FindObject(fHilSrcName, "MHillasSrc");
+    if (!fHilSrc)
+    {
+        *fLog << err << fHilSrcName << " [MHillasSrc] not found... aborting." << endl;
+        return kFALSE;
+    }
+
+    fNewPar = (MNewImagePar*)pList->FindObject(fNewParName, "MNewImagePar");
+    if (!fNewPar)
+    {
+        *fLog << err << fNewParName << " [MNewImagePar] not found... aborting." << endl;
+        return kFALSE;
+    }
+
+    fMcEvt = (MMcEvt*)pList->FindObject("MMcEvt");
+    if (!fMcEvt)
+    {
+        *fLog << err << "MMcEvt not found... aborting." << endl;
+        return kFALSE;
+    }
+
+
+    return kTRUE;
+}
+
+// --------------------------------------------------------------------------
+//
+// Calculation of upper and lower limits
+//
+Double_t MSupercutsCalc::CtsMCut(const Double_t* a,  Double_t ls, Double_t ct,
+                                    Double_t ls2, Double_t dd2) const
+{
+    // define cut-function
+    //
+    //    dNOMLOGSIZE = 4.1 (=log(60.0)
+    //    dNOMCOSZA   = 1.0
+    //
+    //      a: array of cut parameters
+    //     ls: log(SIZE) - dNOMLOGSIZE
+    //    ls2: ls^2
+    //     ct: Cos(ZA.) - dNOMCOSZA
+    //    dd2: DIST^2
+    const Double_t limit =
+        a[0] + a[1] * dd2 + a[2] * ct  +
+        ls  * (a[3] + a[4] * dd2 + a[5] * ct) +
+        ls2 * (a[6] + a[7] * dd2);
+
+    //*fLog << "MSupercutsCalc::CtsMCut; *a = "
+    //      << *a     << ",  " << *(a+1) << ",  " << *(a+2) << ",  "
+    //      << *(a+3) << ",  " << *(a+4) << ",  " << *(a+5) << ",  "
+    //      << *(a+6) << ",  " << *(a+7) << endl;
+
+    //*fLog << "MSupercutsCalc::CtsMCut; ls, ls2, ct, dd2, limit = " << ls
+    //      << ",  " << ls2 << ",  " << ct << ",  " << dd2 << ",  "
+    //      << limit << endl;
+
+    return limit;
+}
+
+// --------------------------------------------------------------------------
+//
+// Returns the mapped value from the Matrix
+//
+Double_t MSupercutsCalc::GetVal(Int_t i) const
+{
+
+    Double_t val = (*fMatrix)[fMap[i]];
+
+
+    //*fLog << "MSupercutsCalc::GetVal; i, fMatrix, fMap, val = "
+    //    << i << ",  " << fMatrix << ",  " << fMap[i] << ",  " << val << endl;
+
+
+    return val;
+}
+
+// --------------------------------------------------------------------------
+//
+// You can use this function if you want to use a MHMatrix instead of the
+// given containers. This function adds all necessary columns to the
+// given matrix. Afterward you should fill the matrix with the corresponding
+// data (eg from a file by using MHMatrix::Fill). If you now loop
+// through the matrix (eg using MMatrixLoop) MEnergyEstParam::Process
+// will take the values from the matrix instead of the containers.
+//
+void MSupercutsCalc::InitMapping(MHMatrix *mat)
+{
+    if (fMatrix)
+      return;
+
+    fMatrix = mat;
+
+    fMap[0] = fMatrix->AddColumn("MMcEvt.fTelescopeTheta");
+    fMap[1] = fMatrix->AddColumn("MHillas.fWidth");
+    fMap[2] = fMatrix->AddColumn("MHillas.fLength");
+    fMap[3] = fMatrix->AddColumn("MHillas.fSize");
+    fMap[4] = fMatrix->AddColumn("MHillas.fMeanX");
+    fMap[5] = fMatrix->AddColumn("MHillas.fMeanY");
+    fMap[6] = fMatrix->AddColumn("MHillasSrc.fDist");
+    fMap[7] = fMatrix->AddColumn("fabs(MHillasSrc.fAlpha)");
+    fMap[8] = fMatrix->AddColumn("sgn(MHillasSrc.fCosDeltaAlpha)*(MHillasExt.fM3Long)");
+    fMap[9] = fMatrix->AddColumn("MNewImagePar.fConc");
+    fMap[10]= fMatrix->AddColumn("MNewImagePar.fLeakage1");
+}
+
+// ---------------------------------------------------------------------------
+//
+// Evaluate dynamical supercuts 
+// 
+//          set hadronness to 0.25 if cuts are fullfilled
+//                            0.75 otherwise
+//
+Int_t MSupercutsCalc::Process()
+{
+    const Double_t kNomLogSize = 4.1;
+    const Double_t kNomCosZA   = 1.0;
+
+    const Double_t theta   = fMatrix ? GetVal(0) : fMcEvt->GetTelescopeTheta();
+    const Double_t width0  = fMatrix ? GetVal(1) : fHil->GetWidth();
+    const Double_t length0 = fMatrix ? GetVal(2) : fHil->GetLength();
+    const Double_t size    = fMatrix ? GetVal(3) : fHil->GetSize();
+    const Double_t meanx   = fMatrix ? GetVal(4) : fHil->GetMeanX();
+    const Double_t meany   = fMatrix ? GetVal(5) : fHil->GetMeanY();
+    const Double_t dist0   = fMatrix ? GetVal(6) : fHilSrc->GetDist();
+
+    Double_t help;
+    if (!fMatrix)
+      help = TMath::Sign(fHilExt->GetM3Long(), 
+	      		 fHilSrc->GetCosDeltaAlpha());
+    const Double_t asym0   = fMatrix ? GetVal(8) : help;
+    const Double_t conc    = fMatrix ? GetVal(9) : fNewPar->GetConc();
+    const Double_t leakage = fMatrix ? GetVal(10): fNewPar->GetLeakage1();
+
+    const Double_t newdist = dist0 * fMm2Deg;
+
+    const Double_t dist2   = meanx*meanx + meany*meany;
+    const Double_t dist    = sqrt(dist2) * fMm2Deg;
+    const Double_t dd2     = dist*dist;
+
+
+    const Double_t dmls    = log(size) - kNomLogSize;
+    const Double_t dmls2   = dmls * dmls;
+
+    const Double_t dmcza   = cos(theta) - kNomCosZA;
+
+    const Double_t length  = length0 * fMm2Deg;
+    const Double_t width   = width0  * fMm2Deg;
+    const Double_t asym    = asym0   * fMm2Deg;
+
+    /*
+    *fLog << "newdist, length, width, asym, dist, conc, leakage = " 
+          << newdist << ",  " << length << ",  " << width << ",  "
+          << asym    << ",  " << dist   << ",  " << conc  << ",  " << leakage
+          << endl;
+  
+    *fLog << "upper cuts in newdist, length, width, asym, dist, conc, leakage = " 
+          << CtsMCut (fSuper->GetDistUp(),   dmls, dmcza, dmls2, dd2) << ",  "
+          << CtsMCut (fSuper->GetDistLo(),   dmls, dmcza, dmls2, dd2) << ",  "
+
+          << CtsMCut (fSuper->GetLengthUp(),   dmls, dmcza, dmls2, dd2) << ",  "
+          << CtsMCut (fSuper->GetLengthLo(),   dmls, dmcza, dmls2, dd2) << ",  "
+
+          << CtsMCut (fSuper->GetWidthUp(),   dmls, dmcza, dmls2, dd2) << ",  "
+          << CtsMCut (fSuper->GetWidthLo(),   dmls, dmcza, dmls2, dd2) << ",  "
+
+          << CtsMCut (fSuper->GetAsymUp(),   dmls, dmcza, dmls2, dd2) << ",  "
+          << CtsMCut (fSuper->GetAsymLo(),   dmls, dmcza, dmls2, dd2) << ",  "
+
+          << CtsMCut (fSuper->GetDistUp(),   dmls, dmcza, dmls2, dd2) << ",  "
+          << CtsMCut (fSuper->GetDistLo(),   dmls, dmcza, dmls2, dd2) << ",  "
+
+          << CtsMCut (fSuper->GetConcUp(),   dmls, dmcza, dmls2, dd2) << ",  "
+          << CtsMCut (fSuper->GetConcLo(),   dmls, dmcza, dmls2, dd2) << ",  "
+
+          << CtsMCut (fSuper->GetLeakage1Up(),   dmls, dmcza, dmls2, dd2) << ",  "
+          << CtsMCut (fSuper->GetLeakage1Lo(),   dmls, dmcza, dmls2, dd2) << ",  "
+          << endl;
+    */
+
+
+    if (
+        //dist    < 1.05                                                     &&
+        //newdist < 1.05                                                     &&
+
+        newdist < CtsMCut (fSuper->GetDistUp(),   dmls, dmcza, dmls2, dd2) &&
+        newdist > CtsMCut (fSuper->GetDistLo(),   dmls, dmcza, dmls2, dd2) &&
+
+        length  < CtsMCut (fSuper->GetLengthUp(), dmls, dmcza, dmls2, dd2) &&
+        length  > CtsMCut (fSuper->GetLengthLo(), dmls, dmcza, dmls2, dd2) &&
+
+        width   < CtsMCut (fSuper->GetWidthUp(),  dmls, dmcza, dmls2, dd2) &&
+        width   > CtsMCut (fSuper->GetWidthLo(),  dmls, dmcza, dmls2, dd2) &&
+
+        asym    < CtsMCut (fSuper->GetAsymUp(),   dmls, dmcza, dmls2, dd2) &&
+        asym    > CtsMCut (fSuper->GetAsymLo(),   dmls, dmcza, dmls2, dd2) &&
+
+        dist    < CtsMCut (fSuper->GetDistUp(),   dmls, dmcza, dmls2, dd2) &&
+        dist    > CtsMCut (fSuper->GetDistLo(),   dmls, dmcza, dmls2, dd2) &&
+
+        conc    < CtsMCut (fSuper->GetConcUp(),   dmls, dmcza, dmls2, dd2) &&
+        conc    > CtsMCut (fSuper->GetConcLo(),   dmls, dmcza, dmls2, dd2) &&
+
+        leakage < CtsMCut (fSuper->GetLeakage1Up(),dmls, dmcza, dmls2, dd2) &&
+        leakage > CtsMCut (fSuper->GetLeakage1Lo(),dmls, dmcza, dmls2, dd2)  ) 
+
+      fHadronness->SetHadronness(0.25);
+    else
+      fHadronness->SetHadronness(0.75);
+
+    //*fLog << "SChadroness = " << fHadronness->GetHadronness() << endl;
+
+    fHadronness->SetReadyToSave();
+
+    return kTRUE;
+}
+
+
+
+
+
+
+
+
+
Index: trunk/MagicSoft/Mars/manalysis/MSupercutsCalc.h
===================================================================
--- trunk/MagicSoft/Mars/manalysis/MSupercutsCalc.h	(revision 2663)
+++ trunk/MagicSoft/Mars/manalysis/MSupercutsCalc.h	(revision 2663)
@@ -0,0 +1,82 @@
+#ifndef MARS_MSupercutsCalc
+#define MARS_MSupercutsCalc
+
+#ifndef MARS_MTask
+#include "MTask.h"
+#endif
+
+#ifndef ROOT_TArrayD
+#include <TArrayD.h>
+#endif
+
+class MParList;
+class MHillas;
+class MHillasSrc;
+class MHillasExt;
+class MNewImagePar;
+class MMcEvt;
+class MCerPhotEvt;
+class MGeomCam;
+class MHadronness;
+class MHMatrix;
+class MSupercuts;
+
+class MSupercutsCalc : public MTask
+{
+private:
+    MHillas       *fHil;
+    MHillasSrc    *fHilSrc;
+    MHillasExt    *fHilExt;
+    MNewImagePar  *fNewPar;
+    MMcEvt        *fMcEvt;
+    MHadronness   *fHadronness; //! output container for hadronness
+    MSupercuts *fSuper;      // container for supercut parameters
+
+    TString  fHadronnessName;   // name of container to store hadronness
+    TString  fHilName;
+    TString  fHilSrcName;
+    TString  fHilExtName;
+    TString  fNewParName;
+    TString  fSuperName;        // name of container for supercut parameters
+
+    Double_t fMm2Deg;           //!
+
+    Int_t     fMap[11];         //!
+    MHMatrix *fMatrix;          //!
+
+    Int_t PreProcess(MParList *pList);
+    Int_t Process();
+
+    Double_t GetVal(Int_t i) const;
+
+    Double_t CtsMCut(const Double_t* a, Double_t ls, Double_t ct,
+                     Double_t ls2, Double_t dd2) const;
+
+public:
+    MSupercutsCalc(const char *hilname="MHillas",
+                      const char *hilsrcname="MHillasSrc",
+                      const char *name=NULL, const char *title=NULL);
+
+    void SetHadronnessName(const TString name) { fHadronnessName = name; }
+    TString GetHadronnessName() const { return fHadronnessName; }
+
+    void InitMapping(MHMatrix *mat);
+    void StopMapping() { InitMapping(NULL); }
+
+
+    ClassDef(MSupercutsCalc, 0) // A class to evaluate the Supercuts
+};
+
+#endif
+
+
+
+
+
+
+
+
+
+
+
+
Index: trunk/MagicSoft/Mars/manalysis/Makefile
===================================================================
--- trunk/MagicSoft/Mars/manalysis/Makefile	(revision 2662)
+++ trunk/MagicSoft/Mars/manalysis/Makefile	(revision 2663)
@@ -68,7 +68,11 @@
            MCT1SupercutsCalc.cc \
            MCT1FindSupercuts.cc \
+           MSupercuts.cc \
+           MSupercutsCalc.cc \
+           MFindSupercuts.cc \
            MMinuitInterface.cc \
            MFiltercutsCalc.cc \
            MCT1PadONOFF.cc  \
+           MPadONOFF.cc  \
            MCalibrationCalc.cc \
            MCalibrationPix.cc  \
@@ -76,4 +80,5 @@
            MCalibrationPINDiode.cc  \
            MCalibrationCam.cc \
+           MPedestalWorkaround.cc \
            MExtractedSignalCam.cc \
            MExtractedSignalPix.cc \
@@ -82,4 +87,5 @@
            MArrivalTimeCalc.cc \
            MMcCalibrationCalc.cc
+>>>>>>> 1.65
 
 SRCS    = $(SRCFILES)
