Index: trunk/MagicSoft/Mars/macros/pedestalstudies.C
===================================================================
--- trunk/MagicSoft/Mars/macros/pedestalstudies.C	(revision 3316)
+++ trunk/MagicSoft/Mars/macros/pedestalstudies.C	(revision 3316)
@@ -0,0 +1,319 @@
+/* ======================================================================== *\
+!
+! *
+! * This file is part of MARS, the MAGIC Analysis and Reconstruction
+! * Software. It is distributed to you in the hope that it can be a useful
+! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
+! * It is distributed WITHOUT ANY WARRANTY.
+! *
+! * Permission to use, copy, modify and distribute this software and its
+! * documentation for any purpose is hereby granted without fee,
+! * provided that the above copyright notice appear in all copies and
+! * that both that copyright notice and this permission notice appear
+! * in supporting documentation. It is provided "as is" without express
+! * or implied warranty.
+! *
+!
+!
+!   Author(s): Markus Gaug, 11/2003 <mailto:markus@ifae.es>
+!
+!   Copyright: MAGIC Software Development, 2000-2003
+!
+!
+\* ======================================================================== */
+
+//const TString pedfile = "/remote/home/pc2/operator/Crab20040214/20040215_16743_P_CrabOn_E.root";
+const TString pedfile = "../20040215_16770_P_OffCrab4_E.root";
+
+//const TString pedfile = "/mnt/users/mdoro/Mars/Data/20040201_14418_P_OffMrk421-1_E.root";
+//const TString pedfile = "/mnt/Data/rootdata/CrabNebula/2004_02_10/20040210_14607_P_CrabNebula_E.root";
+//const TString pedfile = "/mnt/Data/rootdata/CrabNebula/2004_01_26/20040125_10412_P_Crab-On_E.root";
+//const TString pedfile = "/mnt/Data/rootdata/Miscellaneous/2003_12_19/20031218_03522_P_Park_E.root";
+
+void pedestalstudies(TString pedname=pedfile)
+{
+
+    gStyle->SetOptStat(1111);
+    gStyle->SetOptFit();
+
+    MStatusDisplay *display = new MStatusDisplay;
+    display->SetUpdateTime(500);
+    display->Resize(850,700);
+
+    //
+    // Create a empty Parameter List and an empty Task List
+    // The tasklist is identified in the eventloop by its name
+    //
+    MParList  plist;
+    MTaskList tlist;
+    plist.AddToList(&tlist);
+
+    //
+    // Now setup the tasks and tasklist for the pedestals:
+    // ---------------------------------------------------
+    //
+
+    MReadMarsFile read("Events", pedname);
+    read.DisableAutoScheme();
+
+    MGeomApply      geomapl;
+    MExtractSignal  sigcalc;
+
+    //
+    // Set the extraction range higher:
+    //		
+    //sigcalc.SetRange(1,14,1,14);
+
+    MPedCalcPedRun pedcalc;
+
+    //
+    // Additionally to calculating the pedestals, 
+    // you can fill histograms and look at them
+    //
+    MFillH fill("MHPedestalCam", "MExtractedSignalCam");
+
+    tlist.AddToList(&read);
+    tlist.AddToList(&geomapl);
+    tlist.AddToList(&sigcalc);
+    tlist.AddToList(&pedcalc);
+    tlist.AddToList(&fill);
+
+    MGeomCamMagic  geomcam;
+    MPedestalCam   pedcam;
+    MHPedestalCam  hpedcam;
+    plist.AddToList(&geomcam);
+    plist.AddToList(&pedcam);
+    plist.AddToList(&hpedcam);
+
+    //
+    // Create and setup the eventloop
+    //
+    MEvtLoop evtloop;
+
+    evtloop.SetParList(&plist);
+    evtloop.SetDisplay(display);
+ 
+    //
+    // Execute first analysis
+    //
+    if (!evtloop.Eventloop())
+        return;
+
+    tlist.PrintStatistics();
+
+    // 
+    // Look at one specific pixel, after all the histogram manipulations:
+    //
+//    hpedcam[9].DrawClone("fourierevents");
+
+
+    MHCamera dispped0  (geomcam, "Ped;Pedestal",               "Mean per Slice");
+    MHCamera dispped1  (geomcam, "Ped;PedestalErr",            "Mean Error per Slice");
+    MHCamera dispped2  (geomcam, "Ped;PedestalRms",            "RMS per Slice");
+    MHCamera dispped3  (geomcam, "Ped;PedestalRmsErr",         "RMS Error per Slice");
+
+    MHCamera dispped4  (geomcam, "Ped;Mean",                   "Fitted Mean per Slice");
+    MHCamera dispped5  (geomcam, "Ped;MeanErr",                "Fitted Error of Mean per Slice");
+    MHCamera dispped6  (geomcam, "Ped;Sigma",                  "Fitted Sigma per Slice");
+    MHCamera dispped7  (geomcam, "Ped;SigmaErr",               "Fitted Error of Sigma per Slice");
+    MHCamera dispped8  (geomcam, "Ped;Prob",                   "Probability of Fit");
+    MHCamera dispped9  (geomcam, "Ped;DeltaPedestalMean",      "Rel. Diff. Mean per Slice (Calc.-Fitte)");
+    MHCamera dispped10 (geomcam, "Ped;DeltaPedestalMeanError", "Rel. Diff. Mean Error per Slice (Calc.-Fitted)");
+    MHCamera dispped11  (geomcam, "Ped;DeltaRmsSigma",         "Rel. Diff. RMS per Slice (Calc.-Fitted)");
+    MHCamera dispped12  (geomcam, "Ped;DeltaRmsSigmaError",    "Rel. Diff. RMS Error per Slice (Calc.-Fitted)");
+    MHCamera dispped13  (geomcam, "Ped;FitOK",                 "Gaus Fit not OK");
+    MHCamera dispped14  (geomcam, "Ped;FourierOK",             "Fourier Analysis not OK");
+
+    dispped0.SetCamContent(  pedcam, 0);
+    dispped0.SetCamError(    pedcam, 1);
+    dispped1.SetCamContent(  pedcam, 1);
+    dispped2.SetCamContent(  pedcam, 2);
+    dispped2.SetCamError(    pedcam, 3);
+    dispped3.SetCamContent(  pedcam, 3);
+
+    dispped4.SetCamContent( hpedcam, 0);
+    dispped4.SetCamError(   hpedcam, 1);
+    dispped5.SetCamContent( hpedcam, 1);
+    dispped6.SetCamContent( hpedcam, 2);
+    dispped6.SetCamError(   hpedcam, 3);
+    dispped7.SetCamContent( hpedcam, 3);
+    dispped8.SetCamContent( hpedcam, 4);
+    dispped9.SetCamContent( hpedcam, 5);
+    dispped9.SetCamError(   hpedcam, 6);
+    dispped10.SetCamContent(hpedcam, 7);
+    dispped11.SetCamContent(hpedcam, 8);
+    dispped11.SetCamError(  hpedcam, 9);
+    dispped12.SetCamContent(hpedcam, 10);
+    dispped13.SetCamContent(hpedcam, 11);
+    dispped14.SetCamContent(hpedcam, 12);
+
+    dispped0.SetYTitle("Calc. Pedestal per slice [FADC counts]");
+    dispped1.SetYTitle("Calc. Pedestal Error per slice [FADC counts]");
+    dispped2.SetYTitle("Calc. Pedestal RMS per slice [FADC counts]");
+    dispped3.SetYTitle("Calc. Pedestal RMS Error per slice [FADC counts]");
+    dispped4.SetYTitle("Fitted Mean per slice [FADC counts]");
+    dispped5.SetYTitle("Error of Fitted Mean per slice [FADC counts]");
+    dispped6.SetYTitle("Fitted Sigma per slice [FADC counts]");
+    dispped7.SetYTitle("Error of Fitted Sigma per slice [FADC counts]");
+    dispped8.SetYTitle("Fit Probability [1]");
+    dispped9.SetYTitle("Rel. Diff. Pedestal Calc.-Fitted per slice [1]");
+    dispped10.SetYTitle("Rel. Diff. Pedestal Error Calc.-Fitted per slice [1]");
+    dispped11.SetYTitle("Rel. Diff. Pedestal RMS Calc.-Fitted per slice [1]");
+    dispped12.SetYTitle("Rel. Diff. Pedestal RMS Error Calc.-Fitted per slice [1]");
+    dispped13.SetYTitle("[1]");
+    dispped14.SetYTitle("[1]");
+    
+    // Histogram values
+    TCanvas &b1 = display->AddTab("Ped.Calc."); 
+    b1.Divide(4,3);
+
+    CamDraw(b1,dispped0,pedcam,1,4,1);
+    CamDraw(b1,dispped1,pedcam,2,4,2);
+    CamDraw(b1,dispped2,pedcam,3,4,2);
+    CamDraw(b1,dispped3,pedcam,4,4,2);
+
+    // Fitted values 
+    TCanvas &b2 = display->AddTab("Ped.Fit"); 
+    b2.Divide(4,3);
+
+    CamDraw(b2,dispped4,hpedcam,1,4,1);
+    CamDraw(b2,dispped5,hpedcam,2,4,2);
+    CamDraw(b2,dispped6,hpedcam,3,4,2);
+    CamDraw(b2,dispped7,hpedcam,4,4,2);
+
+
+    // Fits Probability
+    TCanvas &b3 = display->AddTab("Ped.Fit Prob.");
+    b3.Divide(1,3);
+
+    CamDraw(b3,dispped8,hpedcam,1,1,3);
+
+    // Differences
+    TCanvas &c4 = display->AddTab("Rel.Diff.Calc.-Fit");
+    c4.Divide(4,3);
+
+    CamDraw(c4,dispped9,hpedcam,1,4,1);
+    CamDraw(c4,dispped10,hpedcam,2,4,1);
+    CamDraw(c4,dispped11,hpedcam,3,4,1);
+    CamDraw(c4,dispped12,hpedcam,4,4,1);
+
+    // Defects
+    TCanvas &c5 = display->AddTab("Defects");
+    c5.Divide(2,2);
+
+    CamDraw(c5,dispped13,hpedcam,1,2,0);
+    CamDraw(c5,dispped14,hpedcam,2,2,0);
+
+}
+
+void CamDraw(TCanvas &c, MHCamera &cam, MCamEvent &evt, Int_t i, Int_t j, Int_t fit)
+{
+
+  c.cd(i);
+  gPad->SetBorderMode(0);
+  MHCamera *obj1=(MHCamera*)cam.DrawCopy("hist");
+  //  obj1->AddNotify(evt);
+  
+  c.cd(i+j);
+  gPad->SetBorderMode(0);
+  obj1->Draw();
+  ((MHCamera*)obj1)->SetPrettyPalette();
+
+  if (fit != 0)
+    {
+      c.cd(i+2*j);
+      gPad->SetBorderMode(0);
+      TH1D *obj2 = (TH1D*)obj1->Projection();
+      
+//      obj2->Sumw2();
+      obj2->Draw();
+      obj2->SetBit(kCanDelete);
+
+      const Double_t min   = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
+      const Double_t max   = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
+      const Double_t integ = obj2->Integral("width")/2.5066283;
+      const Double_t mean  = obj2->GetMean();
+      const Double_t rms   = obj2->GetRMS();
+      const Double_t width = max-min;
+
+      if (rms == 0. || width == 0. )
+        return;
+      
+      switch (fit)
+        {
+        case 1:
+          TF1 *sgaus = new TF1("sgaus","gaus(0)",min,max);
+          sgaus->SetBit(kCanDelete);
+          sgaus->SetParNames("Area","#mu","#sigma");
+          sgaus->SetParameters(integ/rms,mean,rms);
+          sgaus->SetParLimits(0,0.,integ);
+          sgaus->SetParLimits(1,min,max);
+          sgaus->SetParLimits(2,0,width/1.5);
+          obj2->Fit("sgaus","QLR");
+          obj2->GetFunction("sgaus")->SetLineColor(kYellow);
+          break;
+
+        case 2:
+          TString dgausform = "([0]-[3])/[2]*exp(-0.5*(x-[1])*(x-[1])/[2]/[2])";
+          dgausform += "+[3]/[5]*exp(-0.5*(x-[4])*(x-[4])/[5]/[5])";
+          TF1 *dgaus = new TF1("dgaus",dgausform.Data(),min,max);
+          dgaus->SetBit(kCanDelete);
+          dgaus->SetParNames("A_{tot}","#mu_{1}","#sigma_{1}","A_{2}","#mu_{2}","#sigma_{2}");
+          dgaus->SetParameters(integ,(min+mean)/2.,width/4.,
+                               integ/width/2.,(max+mean)/2.,width/4.);
+          // The left-sided Gauss 
+          dgaus->SetParLimits(0,integ-1.5,integ+1.5);
+          dgaus->SetParLimits(1,min+(width/10.),mean);
+          dgaus->SetParLimits(2,0,width/2.);
+          // The right-sided Gauss 
+          dgaus->SetParLimits(3,0,integ);
+          dgaus->SetParLimits(4,mean,max-(width/10.));
+          dgaus->SetParLimits(5,0,width/2.);
+          obj2->Fit("dgaus","QLRM");
+          obj2->GetFunction("dgaus")->SetLineColor(kYellow);
+          break;
+          
+        case 3:
+          TString tgausform = "([0]-[3]-[6])/[2]*exp(-0.5*(x-[1])*(x-[1])/[2]/[2])";
+          tgausform += "+[3]/[5]*exp(-0.5*(x-[4])*(x-[4])/[5]/[5])";
+          tgausform += "+[6]/[8]*exp(-0.5*(x-[7])*(x-[7])/[8]/[8])";
+          TF1 *tgaus = new TF1("tgaus",tgausform.Data(),min,max);
+          tgaus->SetBit(kCanDelete);
+          tgaus->SetParNames("A_{tot}","#mu_{1}","#sigma_{1}",
+                             "A_{2}","#mu_{2}","#sigma_{2}",
+                             "A_{3}","#mu_{3}","#sigma_{3}");
+          tgaus->SetParameters(integ,(min+mean)/2,width/4.,
+                               integ/width/3.,(max+mean)/2.,width/4.,
+                               integ/width/3.,mean,width/2.);
+          // The left-sided Gauss 
+          tgaus->SetParLimits(0,integ-1.5,integ+1.5);
+          tgaus->SetParLimits(1,min+(width/10.),mean);
+          tgaus->SetParLimits(2,width/15.,width/2.);
+          // The right-sided Gauss 
+          tgaus->SetParLimits(3,0.,integ);
+          tgaus->SetParLimits(4,mean,max-(width/10.));
+          tgaus->SetParLimits(5,width/15.,width/2.);
+          // The Gauss describing the outliers
+          tgaus->SetParLimits(6,0.,integ);
+          tgaus->SetParLimits(7,min,max);
+          tgaus->SetParLimits(8,width/4.,width/1.5);
+          obj2->Fit("tgaus","QLRM");
+          obj2->GetFunction("tgaus")->SetLineColor(kYellow);
+          break;
+        case 4:
+          obj2->Fit("pol0","Q");
+          obj2->GetFunction("pol0")->SetLineColor(kYellow);
+          break;
+        case 9:
+          break;
+        default:
+          obj2->Fit("gaus","Q");
+          obj2->GetFunction("gaus")->SetLineColor(kYellow);
+          break;
+        }
+      
+      gPad->Modified();
+      gPad->Update();
+      
+    }
+}
