Index: trunk/MagicSoft/TDAS-Extractor/Algorithms.tex
===================================================================
--- trunk/MagicSoft/TDAS-Extractor/Algorithms.tex	(revision 5243)
+++ trunk/MagicSoft/TDAS-Extractor/Algorithms.tex	(revision 5243)
@@ -0,0 +1,40 @@
+\section{Signal Reconstruction Algorithms}
+
+\ldots {\it In this section, the extractors are described, especially w.r.t. which free parameters are left to play, 
+how they subtract the pedestal, how they compare between calibration and cosmics pulses and how an 
+extraction in case of a pure pedestal event takes place. }
+\newline
+\newline
+{\it Missing coding: 
+\begin{itemize}
+\item Implementing the AB-flag for all extractors \ldots Markus
+\item Implementing a low-gain extraction based on the high-gain information \ldots Arnau
+\item Joining the Sliding Window and Highest Integral extractor into one \ldots Markus
+\item Real fit to the expected pulse shape \ldots Hendrik, Wolfgang ???
+\end{itemize}
+}
+
+
+\subsection{Pure signal extractors}
+\subsubsection{Fixed Window}
+\subsubsection{Fixed Window Peak Search}
+\subsubsection{Fixed Window with integrated spline}
+
+\subsection{Pure time extractors}
+\subsubsection{Highest Integral}
+
+\subsection{Combined extractors}
+\subsubsection{Sliding Window with Highest Integral}
+\subsubsection{Digital Filter}
+\subsubsection{(Fast) Spline with Amplitude extraction}
+\subsubsection{Real fit to the expected pulse shape \newline
+\newline
+}
+
+%References: \cite{OF77} \cite{OF94}.
+
+
+%%% Local Variables: 
+%%% mode: latex
+%%% TeX-master: "MAGIC_signal_reco"
+%%% End: 
Index: trunk/MagicSoft/TDAS-Extractor/MAGIC_signal_reco.tex
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--- trunk/MagicSoft/TDAS-Extractor/MAGIC_signal_reco.tex	(revision 5242)
+++ trunk/MagicSoft/TDAS-Extractor/MAGIC_signal_reco.tex	(revision 5243)
@@ -60,159 +60,15 @@
 %% body %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
-%------------------------------------------------------------
-
-
-
-\section{Introduction}
-
-\begin{itemize}
-\item{Short description of the MAGIC read-out system}
-\end{itemize}
-
-\section{Pulse Shape Reconstruction}
-
-\begin{itemize}
-\item{Algorithm: overlay many events}
-\item{Differences cosmics / calibration}
-\item{Implementation / parameterization in the MC. 
-\newline
-\newline
-\ldots {\it MAYBE, we should create MC calibration pulses for the subsequent studies }
-\newline
-\newline}
-\end{itemize}
-
-\section{Signal Reconstruction Algorithms}
-
-\ldots {\it In this section, the extractors are described, especially w.r.t. which free parameters are left to play, 
-how they subtract the pedestal, how they compare between calibration and cosmics pulses and how an 
-extraction in case of a pure pedestal event takes place. }
-\newline
-\newline
-{\it Missing coding: 
-\begin{itemize}
-\item Implementing the AB-flag for all extractors \ldots Markus
-\item Implementing a low-gain extraction based on the high-gain information \ldots Arnau
-\item Joining the Sliding Window and Highest Integral extractor into one \ldots Markus
-\item Real fit to the expected pulse shape \ldots Hendrik, Wolfgang ???
-\end{itemize}
-}
-
-
-\subsection{Pure signal extractors}
-\subsubsection{Fixed Window}
-\subsubsection{Fixed Window Peak Search}
-\subsubsection{Fixed Window with integrated spline}
-
-\subsection{Pure time extractors}
-\subsubsection{Highest Integral}
-
-\subsection{Combined extractors}
-\subsubsection{Sliding Window with Highest Integral}
-\subsubsection{Digital Filter}
-\subsubsection{(Fast) Spline with Amplitude extraction}
-\subsubsection{Real fit to the expected pulse shape \newline
-\newline
-}
-
-%References: \cite{OF77} \cite{OF94}.
-
-\section{Criteria for an optimal pedestal extraction}
-
-\ldots {\it In this section, the distinction is made between: 
-\begin{itemize}
-\item Defining the pedestal RMS as contribution
-to the extracted signal fluctuations (later used in the calibration) 
-\item Defining the Pedestal Mean and RMS as the result of distributions obtained by 
-applying the extractor to pedestal runs (yielding biases and modified widths).
-\item Deriving the correct probability for background fluctuations based on the extracted signal height. 
-  ( including biases and modified widths).
-\end{itemize}
-\ldots Florian + ??? 
-\newline
-\newline
-}
-\section{Criteria for the Optimal Signal Extraction}
-
-\subsection{Resolution (amplitude and time)}
-\ldots {\it In this section, the jitter to exactly identical input pulses is measured, for times, amplitudes, 
-high-gain and low-gain pulses
-\begin{itemize}
-\item Jitter to pulpo pulses  \ldots Hendrik
-\item Jitter to pedestals (of different intensity) \ldots Hendrik
-\item Comparing MC signal with and w/o noise of different intensity \ldots Nuria
-\item Comparing the low-gain to high-gain ratio for different intensities \ldots Markus
-\item Derive the time jitter to calibration pulses \ldots Maxim ???
-\end{itemize}
-}
-
-\subsection{Bias}
-\ldots {\it In this section, the bias of the extractor for low and high intensities is defined and measured
-\begin{itemize}
-\item Bias to pedestals (of different intensity) \ldots Hendrik
-\item Comparing MC signal with and w/o noise of different intensity \ldots Nuria
-\end{itemize}
-}
-
-\subsection{Signal to Noise}
-\ldots {\it In this section, the signal to noise of an extractor is determined, for times and amplitudes
-\newline \ldots Maxim ???, Thomas ???
-}
-
-\subsection{Stability}
-\ldots {\it In this section, the stability of an extractor to slightly varying pulse shapes is examined.
-\begin{itemize}
-\item Stability w.r.t. different weights files \ldots Hendrik
-\item Outliers in time and amplitude extractions \ldots ???
-\item Stability of conversion factors from the calibration \ldots Markus
-\item Stability w.r.t. the calibration secondary pulses \ldots Hendrik ???
-\end{itemize}
-}
-
-\subsection{Linearity}
-\ldots {\it In this section, the Nuria plots are examined \newline \ldots Nuria
-
-\subsection{Treatment of calibration pulses}
-\ldots {\it In this section, the question of the different pulse shapes between calibration pulses, its 
-secondary pulses, possible secondary pulses from hadronic showers and the typical Cherenkov 
-pulses are extracted by the different extractors and typical dependencies examined, like the 
-Razmik plot, the number of photo-electrons with number of slices, comparisons between different colours, etc.
-\newline \ldots Hendrik??? , Markus???  + ????}
-
-\subsection{Low gain extraction}
-\ldots {\it In this section, the stability of the low-gain extraction w.r.t. the high-gain extraction is 
-examined. Useful plots are still to be defined.
-\newline \ldots Arnau ????}
-
-\subsection{Applicability for different sampling speeds / no pulse shaping.}
-\ldots {\it In this section, some comments of Hendrik will be made}
-
-\subsection{CPU requirements}
-\ldots {\it In this section, the needed CPU time is measured for each extractor independently
-\newline \ldots ALL (after all)}
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-
-\section{Performance}
-\ldots {\it This section will be written after the previous one}
-
-\subsection{Calibration}
-\subsection{Pulpo Pulses}
-\subsection{MC Data}
-\subsection{Cosmics Data?}
-\subsection{Pedestals}
-
-\section{Discussion}
-\ldots {\it This section will discuss the best signal extractor \newline \ldots Thomas ???, Florian }
-
-\section{Conclusions}
-\ldots {\it This section will propose the best signal extractor.}
-
-%------------------------------------------------------------------------------
-
+\include{Introduction}
+\include{Reconstruction}
+\include{Algorithms}
+\include{Pedestal}
+\include{Criteria}
+\include{Performance}
+\include{Discussion}
+\include{Conclusions}
 
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-
 
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