Index: trunk/MagicSoft/Mars/Changelog
===================================================================
--- trunk/MagicSoft/Mars/Changelog	(revision 7731)
+++ trunk/MagicSoft/Mars/Changelog	(revision 7732)
@@ -18,4 +18,12 @@
 
                                                  -*-*- END OF LINE -*-*-
+
+ 2006/05/23 Daniela Dorner
+
+   * scripts/processsequence:
+     - added (script to run callisto, merppupdate and star for 1 
+       sequence)
+
+
 
  2006/05/23 Thomas Bretz
Index: trunk/MagicSoft/Mars/scripts/processsequence
===================================================================
--- trunk/MagicSoft/Mars/scripts/processsequence	(revision 7732)
+++ trunk/MagicSoft/Mars/scripts/processsequence	(revision 7732)
@@ -0,0 +1,156 @@
+#!/bin/sh
+#
+# ========================================================================
+#
+# *
+# * This file is part of MARS, the MAGIC Analysis and Reconstruction
+# * Software. It is distributed to you in the hope that it can be a useful
+# * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
+# * It is distributed WITHOUT ANY WARRANTY.
+# *
+# * Permission to use, copy, modify and distribute this software and its
+# * documentation for any purpose is hereby granted without fee,
+# * provided that the above copyright notice appear in all copies and
+# * that both that copyright notice and this permission notice appear
+# * in supporting documentation. It is provided "as is" without express
+# * or implied warranty.
+# *
+#
+#
+#   Author(s): Daniela Dorner  08/2004 <mailto:dorner@astro.uni-wuerzburg.de>
+#
+#   Copyright: MAGIC Software Development, 2000-2004
+#
+#
+# ========================================================================
+#
+#
+#
+##############################################################################
+#
+# This script can be used to run the following steps for one sequence:
+#  - callisto
+#  - merppupdate
+#  - star
+#
+# You have to set the path, where your Mars version can be found, the outpath,
+# where you want to store the output and the sequencenumber of the sequence
+# you want to process
+# 
+##############################################################################
+
+#function to create directory
+function makedir()
+{
+   if [ ! -d $@ ]
+   then
+     mkdir -pv $@ 
+     if [ ! -d $@ ]
+     then 
+        echo "could not make dir "$@
+        exit
+     fi
+   fi
+}
+
+
+#to be set by the user 
+mars=/home/user/Mars
+outpath=/home/user/outpath
+sequence=55221
+
+
+#needed if not set in .bashrc or when script is e.g. executed in cronjob
+export ROOTSYS=/opt/root_v4.04.02g
+export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ROOTSYS/lib
+export PATH=$PATH:$ROOTSYS/bin
+
+
+no=`printf %08d $sequence | cut -c 1-4`
+sequfile="/magic/sequences/"$no"/sequence"`printf %08d $sequence`".txt"
+calpath=$outpath"/callisto/"`printf %08d $sequence`
+starpath=$outpath"/star/"`printf %08d $sequence`
+
+echo "mars:     "$mars
+echo "outpath:  "$outpath
+echo "sequence: "$sequence
+echo "sequfile: "$sequfile
+echo "path where calibration files are stored : "$calpath
+echo "path where star files are stored        : "$starpath
+
+makedir $calpath
+makedir $starpath
+
+cd $mars
+
+echo "run callisto..."
+echo "./callisto -b -q -f --log=$calpath/callisto$sequence.log --out=$calpath $sequfile "
+./callisto -b -q -f --log=$calpath/callisto$sequence.log --out=$calpath $sequfile 
+echo "callisto is finished "
+echo ""
+
+
+
+calfiles=`find $calpath -name [2][0][0-2][0-9][0,1][0-9][0-3][0-9]_*_Y_*.root`
+
+echo "run merpp update for calibrated files..."
+echo "calibrated data files: "$calfiles
+
+for calfile in ${calfiles[@]}
+do 
+   echo "calfile: "$calfile 
+   outpath=`dirname $calfile`
+   echo "outpath: "$outpath
+   
+   merpplogpath=$outpath"/merpplogs"
+   makedir $merpplogpath
+   
+   runno=`echo $calfile | cut -d_ -f2 | sed -e 's/^0//' | sed -e 's/^0//' | sed -e 's/^0//' `
+   ccfile=`find /magic/subsystemdata/cc/ -name [2][0][0-2][0-9][0,1][0-9][0-3][0-9]_*${runno}_[P,D,C,S]_*_S.rep`
+   cacofile=`find /magic/subsystemdata/caco/ -name dc_[2][0][0-2][0-9]_[0,1][0-9]_[0-3][0-9]_*${runno}_*.txt`
+   echo "runno: "$runno 
+   echo "ccfile: "$ccfile 
+   if [ "$ccfile" = "" ]
+   then
+      echo "no ccfile found for run "$runno 
+      break
+   fi
+   echo "cacofile: "$cacofile 
+   if [ "$cacofile" = "" ]
+   then 
+      echo "no cacofile found for run "$runno 
+      echo "finding cacofile..." 
+      for (( i = 0; i <= 10; i++ ))
+      do 
+         newrun=`echo $runno - $i | bc`
+  #      echo "$missingcacorun + $i = $newrun"
+         path=`dirname $ccfile`
+         path=`echo $path | sed -e 's/cc/caco/'`
+         echo "path: "$path 
+         cacofile=`find $path -name *$newrun*`
+         if [ "$cacofile" = "" ]
+         then
+            continue
+         else
+            break
+            echo "cacofile: "$cacofile 
+         fi
+      done
+   fi
+   echo "./merpp -u --log=$merpplogpath/merppccupdate$runno.log --runfile=$runno $ccfile $calfile "
+   ./merpp -u --log=$merpplogpath/merppccupdate$runno.log --runfile=$runno $ccfile $calfile 
+
+   echo "./merpp -u --log=$merpplogpath/merppcacoupdate$runno.log --auto-time $cacofile $calfile "
+   ./merpp -u --log=$merpplogpath/merppcacoupdate$runno.log --auto-time $cacofile $calfile 
+done
+echo "merppupdate is finished"
+echo ""
+
+
+
+echo "run star..."
+echo "./star -b -q -f --log=$starpath/star$sequence.log --ind=$callistopath --out=$starpath $sequfile "
+./star -b -q -f --log=$starpath/star$sequence.log --ind=$callistopath --out=$starpath $sequfile 
+echo "star is finished "
+
+