source: trunk/DataCheck/FillAuxData.sh@ 12979

Last change on this file since 12979 was 12979, checked in by Daniela Dorner, 13 years ago
small changes in logging
  • Property svn:executable set to *
File size: 14.8 KB
Line 
1#!/bin/bash
2
3# missing:
4# vferify of files
5# only treat file if it is there
6
7# mjd of 1970-01-01
8# needed in this script as for 1 day the mjd in the aux files are inconsistent
9# mjdref=40587
10
11# known:
12# 2011/11/22 MJDREF in DRIVE empty, Time > 55000
13# 2011/11/23 MJDREF in DRIVE not empty, Time > 55000
14# 2011/11/24 MJDREF in DRIVE not empty, Time > 15000
15# raw files
16# 2011/11/21 no MJDREF
17# 2011/11/22 MJDREF
18# further things: https://www.fact-project.org/logbook/showthread.php?tid=67
19
20# trigger rate has as first value -1, but with using the median it should be fine
21
22# option
23doupdate="yes" # update all entries (needed when new fields have been added)
24doupdate="no" # fill only entries which are not yet existing (default)
25
26source `dirname $0`/Sourcefile.sh
27printprocesslog "INFO starting $0 with option doupdate="$doupdate
28
29logfile=$runlogpath"/FillAuxLP-"$datetime".log"
30date >> $logfile
31
32function getfitsstatistics()
33{
34 # $1 filename
35 # $2 colname
36 # $3 tstart
37 # $4 tstop
38 good=
39 min=
40 mean=
41 median=
42 max=
43 tmpfile=`dirname $0`/`basename $1`.tmp
44 echo "ftcopy $1'[col Time]' - | ftstat - | grep 'mean' | grep -E -o [0-9]+[.] | sed -e 's/[.]//g'" >> $logfile
45 timefromfile=`ftcopy $1'[col Time]' - 2>>$logfile | ftstat - 2>>$logfile | grep 'mean' | grep -E -o [0-9]+[.] | sed -e 's/[.]//g'`
46 if [ $timefromfile -gt 30000 ]
47 then
48 echo "ftcopy $1'[Time - 40587> '${3}' && Time - 40587< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -" >> $logfile
49 #ftcopy $1'[Time - 40587> '${3}' && Time - 40587< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -
50 ftcopy $1'[Time - 40587> '${3}' && Time - 40587< '${4}' ][col '${2}';Time]' - 2>>$logfile | ftcopy -'[col '${2}']' - 2>>$logfile | ftstat - 2>>$logfile > $tmpfile
51 else
52 echo "ftcopy $1'[Time> '${3}' && Time< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -" >> $logfile
53 #ftcopy $1'[Time> '${3}' && Time< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -
54 ftcopy $1'[Time> '${3}' && Time< '${4}' ][col '${2}';Time]' - 2>>$logfile | ftcopy -'[col '${2}']' - 2>>$logfile | ftstat - 2>>$logfile > $tmpfile
55 fi
56 good=`cat $tmpfile | grep 'good' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
57 min=`cat $tmpfile | grep 'min' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
58 mean=`cat $tmpfile | grep 'mean' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
59 median=`cat $tmpfile | grep 'median' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
60 max=`cat $tmpfile | grep 'max' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
61 if [ "$good" = "" ]
62 then
63 printprocesslog "WARN couldn't get statistics from file $1 for run $date $file"
64 rm $tmpfile
65 finish
66 fi
67 #echo "good: "$good
68 #echo "min: "$min
69 #echo "max: "$max
70 #echo "mean: "$max
71 #echo "median: "$max
72 rm $tmpfile
73}
74
75# setup to use ftools
76source $HEADAS/headas-init.sh
77
78pwfile=`dirname $0`/.pw
79password=`cat $pwfile 2>/dev/null`
80if [ "$password" == "" ]
81then
82 echo "please insert password in $pwfile"
83 printprocesslog "ERROR password for DB access in $pwfile missing"
84 finish
85fi
86
87# check if software is available
88if ! ls $factpath/fitsdump >/dev/null 2>&1
89then
90 printprocesslog "ERROR "$factpath"/fitsdump is not available."
91 finish
92fi
93
94
95# get last 2 nights
96dates=( `date +%Y/%m/%d --date="-12hour"` `date +%Y/%m/%d --date="-36hour"` )
97#dates=( `find $ziprawdata -mindepth 3 -type d | sort | sed "s/\${ziprawdata_for_sed}//g" | sed -e 's/^\///'` ) #all available dates in /loc_data/zipraw
98#echo ${dates[@]}
99#dates=( "2012/02/21" "2012/02/20" "2012/02/19" "2012/02/18" )
100printprocesslog "INFO processing the following night(s): "${dates[@]}
101echo `date`": processing the following night(s): "${dates[@]} >> $logfile 2>&1
102
103# do filling of aux data
104for date in ${dates[@]}
105do
106 auxdir=$auxdata/$date
107 runnumber=`echo $date | sed -e 's/\///g'`
108
109 # check if aux files are available from that night
110 if ! [ -d $auxdir ]
111 then
112 printprocesslog "INFO no data available in "$auxdir
113 continue
114 else
115 printprocesslog "INFO processing files in "$auxdir
116 fi
117
118 # get file numbers from DB
119 # but only for not-corrupted files
120 query="SELECT fRunID from RunInfo WHERE fNight="$runnumber" AND fFitsFileErrors=0 "
121 printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query
122 filenumbers=( `sendquery $query` )
123 if [ ${#filenumbers} -eq 0 ]
124 then
125 printprocesslog "INFO No files found in the DB for night "$date
126 continue
127 fi
128
129 # get daily fits files
130 trackingfile=$auxdir/$runnumber.DRIVE_CONTROL_TRACKING_POSITION.fits
131 if ! [ -e $trackingfile ]
132 then
133 printprocesslog "WARN "$trackingfile" not found."
134 else
135 tracknumerrors=`fverify $trackingfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
136 if [ $tracknumerrors -gt 0 ]
137 then
138 printprocesslog "WARN for $trackingfile fverify returned "$tracknumerrors" error(s)."
139 fi
140 fi
141
142 triggerratefile=$auxdir/$runnumber.FTM_CONTROL_TRIGGER_RATES.fits
143 if ! [ -e $triggerratefile ]
144 then
145 printprocesslog "WARN "$triggerratefile" not found."
146 else
147 trignumerrors=`fverify $triggerratefile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
148 if [ $trignumerrors -gt 0 ]
149 then
150 printprocesslog "WARN for $triggerratefile fverify returned "$trignumerrors" error(s)."
151 fi
152 fi
153
154 thresholdfile=$auxdir/$runnumber.FTM_CONTROL_STATIC_DATA.fits
155 if ! [ -e $thresholdfile ]
156 then
157 printprocesslog "WARN "$thresholdfile" not found."
158 else
159 treshnumerrors=`fverify $thresholdfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
160 if [ $treshnumerrors -gt 0 ]
161 then
162 printprocesslog "WARN for $thresholdfile fverify returned "$treshnumerrors" error(s)."
163 fi
164 fi
165
166 biasvoltagefile=$auxdir/$runnumber.BIAS_CONTROL_VOLTAGE.fits
167 if ! [ -e $biasvoltagefile ]
168 then
169 printprocesslog "WARN "$biasvoltagefile" not found."
170 else
171 biasnumerrors=`fverify $biasvoltagefile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
172 if [ $biasnumerrors -gt 0 ]
173 then
174 printprocesslog "WARN for $biasvoltagefile fverify returned "$biasnumerrors" error(s)."
175 fi
176 fi
177
178 # fill auxiliary information for files
179 for filenum in ${filenumbers[@]}
180 do
181 printprocesslog "INFO processing file number "$runnumber"_"`printf %03d $filenum`
182 echo `date`": processing file number "$runnumber"_"`printf %03d $filenum` >> $logfile 2>&1
183 # get information from rawfile
184 rawfile=$ziprawdata/$date/$runnumber"_"`printf %03d $filenum`.fits.gz
185 if ! [ -e $rawfile ]
186 then
187 printprocesslog "ERROR: "$rawfile" not found."
188 continue
189 fi
190 #checkfitsfile=`fverify $rawfile 2>/dev/null | grep '0 error(s)'`
191 #if [ "$checkfitsfile" == "" ]
192 #then
193 # numfitserrors=1
194 # printprocesslog "WARN: "$rawfile" probably corrupted."
195 # continue
196 #fi
197 runtype=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z-]+[']" | sed -e "s/'//g"`
198 mjdrefraw=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
199 tstarti=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
200 tstartf=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
201 tstopi=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
202 tstopf=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '0[.][0-9]+'`
203 if [ "$tstarti" == "" ] || [ "$tstopi" == "" ] || [ "$tstartf" == "" ] || [ "$tstopf" == "" ]
204 then
205 printprocesslog "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF "
206 continue
207 fi
208 # assuming that at least TSTARTI and TSTOPI are consistent
209 #echo $rawfile
210 #echo $tstarti
211 #echo $tstopi
212 #echo $tstartf
213 #echo $tstopf
214 if [ $tstarti -gt 30000 ]
215 then
216 tstart=`echo " $tstarti + $tstartf - 40587 " | bc -l`
217 tstart2=`echo " $tstarti + $tstartf - 40587 - 0.00011574 " | bc -l` # 10 sec
218 #tstart2=`echo " $tstarti + $tstartf - 40587 - 0.000023148 " | bc -l` # 2 sec
219 tstop=`echo " $tstopi + $tstopf - 40587 " | bc -l`
220 else
221 tstart=`echo " $tstarti + $tstartf " | bc -l`
222 tstart2=`echo " $tstarti + $tstartf - 0.00011574 " | bc -l` # 10 sec
223 #tstart2=`echo " $tstarti + $tstartf - 0.000023148 " | bc -l` # 2 sec
224 tstop=`echo " $tstopi + $tstopf " | bc -l`
225 fi
226 #echo $tstart
227 #echo $tstop
228 #if [ $runnumber -eq 20111123 ]
229 #then
230 # # add mjdref for days were aux files were inconsistent
231 # tstart=`echo " $tstart + $mjdref " | bc -l`
232 # tstart2=`echo " $tstart2 + $mjdref " | bc -l`
233 # tstop=`echo " $tstop + $mjdref " | bc -l`
234 #fi
235
236 # build query to update runinfo in DB
237 query="UPDATE RunInfo SET "
238
239 # get information from tracking
240 if [ -e $trackingfile ] && [ $tracknumerrors -eq 0 ]
241 then
242 # RA
243 getfitsstatistics $trackingfile "Ra" $tstart $tstop
244 if [ "$min" == "$max" ] && [ $good -gt 0 ]
245 then
246 query=$query" fRightAscension="$mean
247 else
248 query=$query" fRightAscension=NULL"
249 if [ $good -gt 0 ]
250 then
251 printprocesslog "WARN for $rawfile RA changes within run (min: "$min", max: "$max")."
252 fi
253 fi
254 # Declination
255 getfitsstatistics $trackingfile "Dec" $tstart $tstop
256 if [ "$decmin" == "$decmax" ] && [ $good -gt 0 ]
257 then
258 query=$query", fDeclination="$mean
259 else
260 query=$query", fDeclination=NULL"
261 if [ $good -gt 0 ]
262 then
263 printprocesslog "WARN for $rawfile declination changes within run (min: "$min", max: "$max")."
264 fi
265 fi
266 # Zd
267 getfitsstatistics $trackingfile "Zd" $tstart $tstop
268 if [ $good -gt 0 ]
269 then
270 query=$query", fZenithDistanceMin="$min
271 query=$query", fZenithDistanceMean="$mean
272 query=$query", fZenithDistanceMax="$max
273 else
274 query=$query", fZenithDistanceMin=NULL"
275 query=$query", fZenithDistanceMean=NULL"
276 query=$query", fZenithDistanceMax=NULL"
277 fi
278 # Az
279 getfitsstatistics $trackingfile "Az" $tstart $tstop
280 if [ $good -gt 0 ]
281 then
282 query=$query", fAzimuthMin="$min
283 query=$query", fAzimuthMean="$mean
284 query=$query", fAzimuthMax="$max
285 else
286 query=$query", fAzimuthMin=NULL"
287 query=$query", fAzimuthMean=NULL"
288 query=$query", fAzimuthMax=NULL"
289 fi
290 else
291 query=$query" fRightAscension=NULL"
292 query=$query", fDeclination=NULL"
293 query=$query", fZenithDistanceMin=NULL"
294 query=$query", fZenithDistanceMean=NULL"
295 query=$query", fZenithDistanceMax=NULL"
296 query=$query", fAzimuthMin=NULL"
297 query=$query", fAzimuthMean=NULL"
298 query=$query", fAzimuthMax=NULL"
299 fi
300
301 # get information from trigger
302 if [ -e $triggerratefile ] && [ $trignumerrors -eq 0 ]
303 then
304 #echo " $triggerratefile TriggerRate $tstart $tstop"
305 getfitsstatistics $triggerratefile "TriggerRate" $tstart $tstop
306# if [ "$mjdreftrig" == "" ]
307# then
308# ratemin=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
309# ratemax=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
310# ratemean=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
311# ratemedian=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
312# else
313# ratemin=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
314# ratemax=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
315# ratemean=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
316# ratemedian=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
317# fi
318 if [ $good -gt 0 ]
319 then
320 query=$query", fTriggerRateMedian="$median
321 else
322 query=$query", fTriggerRateMedian=NULL"
323 fi
324 else
325 query=$query", fTriggerRateMedian=NULL"
326 fi
327
328 # get information from thresholds
329 if [ -e $thresholdfile ] && [ $treshnumerrors -eq 0 ]
330 then
331 getfitsstatistics $thresholdfile "PatchThresh" $tstart $tstop
332 if [ $good -eq 0 ]
333 then
334 getfitsstatistics $thresholdfile "PatchThresh" $tstart2 $tstop
335 fi
336 if [ $good -gt 0 ]
337 then
338 query=$query", fThresholdMedian="$median
339 else
340 query=$query", fThresholdMedian=NULL"
341 fi
342 else
343 query=$query", fThresholdMedian=NULL"
344 fi
345
346 # get information from bias: U
347 if [ -e $biasvoltagefile ] && [ $biasnumerrors -eq 0 ]
348 then
349 getfitsstatistics $biasvoltagefile "U" $tstart $tstop
350 if [ $good -eq 0 ]
351 then
352 getfitsstatistics $biasvoltagefile "U" $tstart2 $tstop
353 fi
354 if [ $good -gt 0 ]
355 then
356 query=$query", fBiasVoltageMedian="$median
357 else
358 query=$query", fBiasVoltageMedian=NULL"
359 fi
360 else
361 query=$query", fBiasVoltageMedian=NULL"
362 fi
363
364 # add where condition
365 query=$query" WHERE fNight="$runnumber" AND fRunID="$filenum
366
367 # send query to DB
368 sendquery >/dev/null
369 done
370done
371
372finish
373
374
Note: See TracBrowser for help on using the repository browser.