1 | #!/bin/sh
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2 | #
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3 | # ========================================================================
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4 | #
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5 | # *
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6 | # * This file is part of MARS, the MAGIC Analysis and Reconstruction
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7 | # * Software. It is distributed to you in the hope that it can be a useful
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8 | # * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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9 | # * It is distributed WITHOUT ANY WARRANTY.
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10 | # *
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11 | # * Permission to use, copy, modify and distribute this software and its
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12 | # * documentation for any purpose is hereby granted without fee,
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13 | # * provided that the above copyright notice appear in all copies and
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14 | # * that both that copyright notice and this permission notice appear
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15 | # * in supporting documentation. It is provided "as is" without express
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16 | # * or implied warranty.
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17 | # *
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18 | #
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19 | #
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20 | # Author(s): Daniela Dorner 05/2005 <mailto:dorner@astro.uni-wuerzburg.de>
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21 | #
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22 | # Copyright: MAGIC Software Development, 2000-2010
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23 | #
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24 | #
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25 | # ========================================================================
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26 | #
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27 | # This a resource file for the scripts, in which the standard paths and
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28 | # functions, which are needed more often are stored.
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29 | # Only constant variables are stored here, changing variables are stored
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30 | # in datacenter/scripts/setup
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31 | #
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32 |
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33 | # check if script has been started with absolute path
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34 | if ! dirname $0 | grep -E '^/' >/dev/null 2>&1
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35 | then
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36 | echo "Please start your script with an absolute path."
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37 | exit
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38 | fi
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39 |
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40 | if [ "$AUTOMATIONSETUP" = "" ]
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41 | then
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42 | echo "Please set the environment variable \$AUTOMATIONSETUP."
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43 | exit
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44 | fi
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45 |
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46 | # possible solution for $0 problem:
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47 | # ${BASH_SOURCE[0]}
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48 | # but has to be checked and tested more carefully
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49 | # should solve at least problem with login-shell and with source
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50 | source `dirname $0`/setup.$AUTOMATIONSETUP
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51 |
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52 | datetime=`date +%F-%H-%M-%S`
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53 |
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54 |
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55 | # function to make sure that a directory is made
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56 | function makedir()
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57 | {
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58 | if [ ! -d $@ ]
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59 | then
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60 | mkdir -pv $@
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61 | if [ ! -d $@ ]
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62 | then
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63 | if ! [ "$processlog" = "" ]
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64 | then
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65 | echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "`basename $0`"["$$"] ERROR could not make dir "$@ >> $processlog
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66 | else
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67 | echo "could not make dir "$@
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68 | fi
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69 | if ls $lockfile >/dev/null 2>&1
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70 | then
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71 | rm -v $lockfile
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72 | fi
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73 | exit
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74 | fi
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75 | fi
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76 | }
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77 |
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78 | # logging paths for runlogs and processlog
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79 | runlogpath=$logpath/run/`date +%Y/%m/%d`
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80 | processlogpath=$logpath/processlog
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81 | makedir $runlogpath
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82 | makedir $processlogpath
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83 | processlog=$processlogpath/process`date +%F`.log
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84 |
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85 | makedir $lockpath
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86 |
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87 |
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88 | # function to provide proper logging in a single logfile ($processlog)
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89 | function printprocesslog
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90 | {
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91 | makedir $processlogpath
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92 | echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "`basename $0`"["$$"] "$@ >> $processlog
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93 | }
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94 |
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95 | # function to exit a script properly
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96 | function finish()
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97 | {
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98 | if ! [ "$lockfile" = "" ] && ls $lockfile >/dev/null 2>&1
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99 | then
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100 | printprocesslog "INFO " `rm -v $lockfile`
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101 | fi
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102 | printprocesslog "INFO finished $0"
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103 | exit
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104 | }
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105 |
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106 |
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107 | # set checkvalue to ok at the beginning of the scripts
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108 | check="ok"
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109 |
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110 | #failed codes
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111 | #sequence build status
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112 | Fbuildsequ=1
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113 | Fdoexcl=2
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114 | #run process status
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115 | Ftimecorr=3
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116 | Ffillraw=4
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117 | Fsinope=5
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118 | Ffillsinope=6
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119 | Fresetexcl=7
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120 | #sequence process status
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121 | Fwritesequfile=8
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122 | Ffilesavail=9
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123 | Fnoccfile=10
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124 | Fnocacofile=11
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125 | Fmerppcc=12
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126 | Fmerppcaco=13
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127 | Fcallisto=14
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128 | Ffillcalib=15
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129 | Ffillsignal=16
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130 | Fstar=17
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131 | Ffillstar=18
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132 | #dataset process status
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133 | Fwritedatasetfile=19
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134 | Fstardone=20
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135 | Fganymed=21
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136 | Ffillganymed=22
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137 | #again run process status
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138 | FCompmux=26
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139 | Fdowebplots=27
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140 | #again mc run process status
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141 | Fmccallisto=28
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142 | Ffillmccalib=29
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143 | Ffillmcsignal=30
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144 | Fmcstar=31
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145 | Ffillmcstar=32
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146 | Fcorsikasimtel=33
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147 | Fchimp=34
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148 | Fchimpcp=35
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149 | Fctastar=36
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150 | Fctastarcp=37
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151 | FctastereoA=38
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152 | FctastereoB=39
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153 | FctastereoC=40
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154 | FctastereoD=41
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155 | FctastereoE=42
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156 | FctastereoF=43
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157 | FctastereoG=44
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158 | FctastereoH=45
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159 | Fctastereocp=46
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160 |
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161 | # setup for jobmanager:
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162 | # log files (can't be defined in script itself, as script can run longer
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163 | # than one day
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164 | jmerrorlog=$runlogpath/jobmanager-error`date +%F`.log
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165 | jmscriptlog=$runlogpath/jobmanager`date +%F`.log
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166 |
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167 | # check if rc-files are available
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168 | if ! ls $steps >/dev/null
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169 | then
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170 | echo "Can't find steps.rc ($steps)"
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171 | finish
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172 | fi
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173 | if ! ls $sqlrc >/dev/null
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174 | then
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175 | echo "Can't find sql.rc ($sqlrc)"
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176 | finish
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177 | fi
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178 |
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179 | # resetting values
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180 | pno=0
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181 | totalpno=0
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182 | running=0
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183 | queued=0
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184 | runningscript=0
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185 | queuedscript=0
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186 | stillinqueue=0
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187 |
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188 |
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189 | # alias (we cannot check the beginning of the line due to
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190 | # color codes in filldotraw.C)
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191 | alias 'intgrep'='grep -E -o \\\(int\\\)[0-9]+$ | grep -E -o [0-9]+'
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192 |
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193 |
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194 | # in the following the functions, which are needed by several scripts, are
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195 | # defined
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196 |
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197 | # function to check if a process is already locked
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198 | # command line option can be used to execute something, e.g. 'continue'
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199 | function checklock()
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200 | {
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201 | if ! echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "`basename $0`"["$$"] "`uname -a` > $lockfile 2>/dev/null
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202 | then
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203 | printprocesslog "WARN lockfile $lockfile exists"
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204 | $@
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205 | exit
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206 | else
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207 | printprocesslog "INFO created lockfile $lockfile"
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208 | fi
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209 | }
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210 |
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211 | # print the current status values
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212 | function printstatusvalues()
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213 | {
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214 | echo "the current values are:"
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215 | echo " starttime=$starttime"
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216 | echo " stoptime=$stoptime"
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217 | echo " returncode=$returncode"
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218 | echo "-- check: -$check-"
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219 | echo ""
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220 | }
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221 |
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222 | # get the db-setup from the sql.rc
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223 | function getdbsetup()
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224 | {
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225 | db=`grep Database $sqlrc | grep -v '#' | sed -e 's/Database: //' -e 's/ //g'`
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226 | pw=`grep Password $sqlrc | grep -v '#' | sed -e 's/Password: //' -e 's/ //g'`
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227 | us=`grep User $sqlrc | grep -v '#' | sed -e 's/User: //' -e 's/ //g'`
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228 | ho=`grep URL $sqlrc | grep -v '#' | sed -e 's/ //g' -e 's/URL:mysql:\/\///'`
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229 | # echo "setup: "
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230 | # echo " db: "$db
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231 | # echo " pw: "$pw
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232 | # echo " us: "$us
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233 | # echo " ho: "$ho
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234 | }
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235 |
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236 | # function to get the needed information from the dependencies-file steps.rc
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237 | function getstepinfo()
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238 | {
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239 | getdbsetup
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240 | needs=`grep "$step[.]Needs:" $steps | grep -v '#' | sed -e "s/$step[.]Needs://"`
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241 | noderestricted=`grep "$step[.]NodeRestricted:" $steps | grep -v '#' | sed -e "s/$step[.]NodeRestricted://" -e 's/ //g'`
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242 | prims=( `grep "$step[.]Primaries:" $steps | grep -v '#' | sed -e "s/$step[.]Primaries://"` )
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243 | # echo " needs: $needs"
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244 | # echo " noderestricted: $noderestricted"
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245 | # echo " prims: ${prims[@]}"
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246 | }
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247 |
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248 | # function to get the primaries of a step from the dependencies-file steps.rc
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249 | function getprimary()
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250 | {
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251 | getdbsetup
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252 | grep $@"[.]Primaries:" $steps | grep -v '#' | sed -e "s/$@[.]Primaries://"
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253 | }
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254 |
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255 | # function to get the join of a step
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256 | # (normal join but using different primaries)
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257 | # from the dependencies-file steps.rc
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258 | function getjoin()
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259 | {
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260 | getdbsetup
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261 | grep $@"[.]Join:" $steps | grep -v '#' | sed -e "s/$@[.]Join://"
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262 | }
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263 |
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264 | # function to get the special join of a step
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265 | # (i.e. join with a different table)
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266 | # from the dependencies-file steps.rc
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267 | function getspecialjoin()
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268 | {
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269 | getdbsetup
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270 | grep $@"[.]SpecialJoin:" $steps | grep -v '#' | sed -e "s/$@[.]SpecialJoin://"
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271 | }
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272 |
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273 | # function to get the needs of a step from the dependencies-file steps.rc
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274 | function getneeds()
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275 | {
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276 | getdbsetup
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277 | grep $@"[.]Needs:" $steps | sed -e "s/$@[.]Needs://"
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278 | }
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279 |
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280 | # function to create the middle part of a query
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281 | # which is identical for the functions getstatus() and gettodo()
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282 | function middlepartofquery()
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283 | {
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284 | # add from which table the information is queried
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285 | query=$query" FROM "$step"Status "
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286 | # add the joins to the tables in which the status of the preceding steps is stored
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287 | for need in $needs
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288 | do
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289 | needprims=( `getprimary $need` )
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290 | # make sure that the correct joins are used
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291 | # in case the primaries of the step and the need are
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292 | # the same, the tables are join with these primaries
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293 | # otherwise it is checked whether there has to be a
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294 | # join with different primaries (indicated as 'Join'
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295 | # in the steps.rc
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296 | # 'SpecialJoins' do not have to be taken into account here
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297 | if [ "`echo ${needprims[@]}`" == "`echo ${prims[@]}`" ]
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298 | then
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299 | query=$query" LEFT JOIN "$need"Status USING (${prims[@]}) "
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300 | else
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301 | stdjoin=`getjoin $need`
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302 | if ! [ "$stdjoin" = "" ]
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303 | then
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304 | query=$query" "$stdjoin" "
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305 | fi
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306 | fi
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307 | done
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308 | # add condition
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309 | query=$query" WHERE "
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310 | # add condition for the status of the peceding steps
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311 | counter=0
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312 | for need in $needs
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313 | do
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314 | if [ $counter -gt 0 ]
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315 | then
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316 | query=$query" AND "
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317 | fi
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318 | needprims=( `getprimary $need` )
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319 | # in case the primaries of the tables agree
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320 | # or there is just a normal 'Join' needed
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321 | # only the condition is added to the query
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322 | # for tables which need a join with a different
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323 | # table, a special query is added using the
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324 | # 'SpecialJoin' from the steps.rc
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325 | if [ "`echo ${needprims[@]}`" == "`echo ${prims[@]}`" ] || ! [ "$stdjoin" = "" ]
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326 | then
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327 | query=$query" NOT ISNULL("$need"Status.fStartTime) AND "
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328 | query=$query" NOT ISNULL("$need"Status.fStopTime) AND "
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329 | query=$query" ISNULL("$need"Status.fReturnCode) "
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330 | else
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331 | query=$query" (SELECT COUNT(*) FROM "$need"Status "
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332 | query=$query" "`getspecialjoin $need`" "
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333 | query=$query" WHERE "$step"Status."`echo ${prims[0]} | sed -e 's/,//g'`"="$step"Status."`echo ${prims[0]} | sed -e 's/,//g'`
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334 | for (( j=1 ; j < ${#prims[@]} ; j++ ))
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335 | do
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336 | query=$query" AND "$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'`"="$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'`
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337 | done
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338 | query=$query") = (SELECT COUNT(*) FROM "$need"Status "
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339 | query=$query" "`getspecialjoin $need`" "
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340 | query=$query" WHERE "$step"Status."`echo ${prims[0]} | sed -e 's/,//g'`"="$step"Status."`echo ${prims[0]} | sed -e 's/,//g'`
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341 | for (( j=1 ; j < ${#prims[@]} ; j++ ))
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342 | do
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343 | query=$query" AND "$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'`"="$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'`
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344 | done
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345 | query=$query" AND NOT ISNULL(fStartTime) "
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346 | query=$query" AND NOT ISNULL(fStopTime) "
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347 | query=$query" AND ISNULL(fReturnCode)) "
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348 | fi
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349 | counter=`echo $counter + 1 | bc -l`
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350 | done
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351 | # add condition for the status of the step itself
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352 | if [ $counter -gt 0 ]
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353 | then
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354 | query=$query" AND "
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355 | fi
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356 | query=$query" ISNULL("$step"Status.fStartTime) "
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357 | query=$query" AND ISNULL("$step"Status.fStopTime) "
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358 | query=$query" AND ISNULL("$step"Status.fReturnCode) "
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359 | }
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360 |
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361 | # function to get todolist
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362 | # returns the next or the list of next steps
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363 | function gettodo()
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364 | {
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365 | # reset the variable for the number of the next step
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366 | process=
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367 | printprocesslog "INFO getting todo..."
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368 | getstepinfo
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369 | # get query
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370 | query=" SELECT "`echo ${prims[0]} | sed -e 's/,//g'`
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371 | for (( j=1 ; j < ${#prims[@]} ; j++ ))
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372 | do
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373 | query=$query", "`echo ${prims[$j]} | sed -e 's/,//g'`
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374 | done
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375 | # get middle par of query
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376 | middlepartofquery
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377 | # add requirement for production host in case it is needed
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378 | if [ "$2 " != " " ]
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379 | then
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380 | query=$query" AND fProductionHostKEY=$2 "
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381 | fi
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382 | # order by priority to the the number of the next step to be done
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383 | query=$query" ORDER BY "$step"Status.fPriority desc "
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384 | # add limitation in case only one or a limited number of
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385 | # processes should be executed
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386 | if [ "$1 " != " " ]
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387 | then
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388 | query=$query" limit 0, $1 "
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389 | fi
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390 | # print query
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391 | #echo " gettodo QUERY: "$query
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392 | printprocesslog "INFO gettodo QUERY: "$query
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393 | # execute query
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394 | if ! process=`mysql -s -u $us --password=$pw --host=$ho $db -e " $query "`
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395 | then
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396 | printprocesslog "ERROR could not query processes from db (program: $program, function gettodo)"
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397 | finish
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398 | fi
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399 | # get numbers of next step from mysql result
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400 | if [ "$process" = "" ]
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401 | then
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402 | printprocesslog "INFO => nothing to do"
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403 | finish
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404 | else
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405 | primaries=( $process )
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406 | num=`expr ${#primaries[@]} / ${#prims[@]} `
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407 | fi
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408 | }
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409 |
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410 | # function to get the number of processes which still have to be done
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411 | function getstatus()
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412 | {
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413 | # reset the variable for the number of steps to be done
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414 | numproc=
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415 | getstepinfo
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416 | # get query
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417 | query=" SELECT COUNT(*), 1 " # the 1 is just for grouping
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418 | # get middle part of query
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419 | middlepartofquery
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420 | # add requirement for production host in case it is needed
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421 | if [ "$1 " != " " ]
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422 | then
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423 | query=$query" AND fProductionHostKEY=$1 "
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424 | fi
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425 | # group by an 'artifical' column to get the number of lines
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426 | query=$query" GROUP BY 2 "
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427 | # printing query
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428 | #echo " getstatus QUERY: "$query
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429 | printprocesslog "INFO getstatus QUERY: "$query
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430 | # execute query
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431 | if ! numprocs=( `mysql -s -u $us --password=$pw --host=$ho $db -e " $query "` )
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432 | then
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433 | printprocesslog "ERROR could not query number of processes from db (program: $program, function getstatus)"
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434 | echo `date +%F\ %T`" ERROR could not query number of processes from db (program: $program, function getstatus)"
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435 | continue
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436 | fi
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437 | # get number of processes from mysql result
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438 | if [ "${numprocs[1]}" = "" ]
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439 | then
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440 | numproc=0
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441 | else
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442 | numproc=${numprocs[0]}
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443 | fi
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444 | }
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445 |
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446 | # function to set status of a process in the db
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447 | function setstatus()
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448 | {
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449 | # remark:
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450 | # this function does not include the 'Default' flag
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451 | # for resetting steps
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452 |
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453 | # for dowebplots (there are steps which have no entry in the DB)
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454 | if [ "$step" = "no" ]
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455 | then
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456 | return
|
---|
457 | fi
|
---|
458 |
|
---|
459 | # reset status values
|
---|
460 | starttime=NULL
|
---|
461 | stoptime=NULL
|
---|
462 | returncode=NULL
|
---|
463 | # evaluate the status values
|
---|
464 | case $@ in
|
---|
465 | start) printprocesslog "INFO setstatus start"
|
---|
466 | starttime="Now()"
|
---|
467 | ;;
|
---|
468 | stop) case $check in
|
---|
469 | ok) printprocesslog "INFO setstatus stop - ok"
|
---|
470 | starttime=noreset
|
---|
471 | stoptime="Now()"
|
---|
472 | ;;
|
---|
473 | no) printprocesslog "INFO setstatus stop - nothing new"
|
---|
474 | check="ok"
|
---|
475 | ;;
|
---|
476 | *) printprocesslog "INFO setstatus stop - failed"
|
---|
477 | starttime=noreset
|
---|
478 | stoptime="Now()"
|
---|
479 | if [ "$check" == "" ]
|
---|
480 | then
|
---|
481 | returncode=1
|
---|
482 | else
|
---|
483 | returncode=$check
|
---|
484 | fi
|
---|
485 | check="ok"
|
---|
486 | ;;
|
---|
487 | esac
|
---|
488 | ;;
|
---|
489 | *) printprocesslog "ERROR function setstatus got wrong variable"
|
---|
490 | finish
|
---|
491 | ;;
|
---|
492 | esac
|
---|
493 | # get
|
---|
494 | getstepinfo
|
---|
495 |
|
---|
496 | # get the influences from the steps.rc by evaluating the needs of all steps
|
---|
497 | influences=`grep $step $steps | grep "Needs" | grep -v "$step[.]Needs" | cut -d'.' -f1`
|
---|
498 |
|
---|
499 | # get query
|
---|
500 | query=" UPDATE "$step"Status "
|
---|
501 | # add joins to the influenced tables
|
---|
502 | stepspecialjoin=""
|
---|
503 | for influence in $influences
|
---|
504 | do
|
---|
505 | inflprims=( `getprimary $influence` )
|
---|
506 | # make sure that the correct joins are used
|
---|
507 | # in case the primaries of the step and the influence are
|
---|
508 | # the same, the tables are join with these primaries
|
---|
509 | # otherwise they are joined with the primaries of the influence
|
---|
510 | if [ "`echo ${inflprims[@]}`" == "`echo ${prims[@]}`" ]
|
---|
511 | then
|
---|
512 | query=$query" LEFT JOIN "$influence"Status USING (${prims[@]}) "
|
---|
513 | else
|
---|
514 | prims2=`getprimary $step | sed -e "s/\ //g"`
|
---|
515 | primstest=`echo ${inflprims[@]} | sed -e "s/\ //g" | sed -e "s/$prims2//g"`
|
---|
516 | if [ "$primstest" == "`echo ${inflprims[@]} | sed -e "s/\ //g"`" ]
|
---|
517 | then
|
---|
518 | if [ "$stepspecialjoin" == "" ]
|
---|
519 | then
|
---|
520 | stepspecialjoin=`getspecialjoin $step`
|
---|
521 | query=$query" "$stepspecialjoin" "
|
---|
522 | fi
|
---|
523 | query=$query" LEFT JOIN "$influence"Status USING (${inflprims[@]}) "
|
---|
524 | else
|
---|
525 | infljoin=`getjoin $influence`
|
---|
526 | if [ "$infljoin" = "" ]
|
---|
527 | then
|
---|
528 | query=$query" LEFT JOIN "$influence"Status USING (${prims[@]}) "
|
---|
529 | else
|
---|
530 | query=$query" "$infljoin
|
---|
531 | # warning: this is a workaround
|
---|
532 | # it has to be checked whether it works for all steps
|
---|
533 | stepspecialjoin="not empty"
|
---|
534 | fi
|
---|
535 | fi
|
---|
536 | fi
|
---|
537 | done
|
---|
538 | # set the status values according to the new status of the step
|
---|
539 | query=$query" SET "
|
---|
540 | if ! [ "$starttime" = "noreset" ]
|
---|
541 | then
|
---|
542 | query=$query" "$step"Status.fStartTime=$starttime, "
|
---|
543 | fi
|
---|
544 | query=$query" "$step"Status.fStopTime=$stoptime, "$step"Status.fReturnCode=$returncode "
|
---|
545 | # set also the status values of the influenced steps
|
---|
546 | for influence in $influences
|
---|
547 | do
|
---|
548 | query=$query", "$influence"Status.fStartTime=NULL "
|
---|
549 | query=$query", "$influence"Status.fStopTime=NULL "
|
---|
550 | query=$query", "$influence"Status.fReturnCode=NULL "
|
---|
551 | done
|
---|
552 | # give the condition for which step the status values have to be set
|
---|
553 | query=$query" WHERE "
|
---|
554 | if [ "$s" = "" ]
|
---|
555 | then
|
---|
556 | s=0
|
---|
557 | fi
|
---|
558 | query=$query" "$step"Status."`echo ${prims[0]} | sed -e 's/,//g'`"='${primaries[$s*${#prims[@]}]}'"
|
---|
559 | for (( j=1 ; j < ${#prims[@]} ; j++ ))
|
---|
560 | do
|
---|
561 | query=$query" AND "$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'`"='${primaries[$s*${#prims[@]}+$j]}' "
|
---|
562 | done
|
---|
563 | # print query
|
---|
564 | #echo " setstatus QUERY: "$query
|
---|
565 | printprocesslog "INFO setstatus QUERY: "$query
|
---|
566 | # execute query
|
---|
567 | if ! mysql -s -u $us --password=$pw --host=$ho $db -e " $query "
|
---|
568 | then
|
---|
569 | printprocesslog "ERROR could not set status in db (program: $program, function setstatus)"
|
---|
570 | finish
|
---|
571 | fi
|
---|
572 | }
|
---|
573 |
|
---|
574 | # function to send a mysql query
|
---|
575 | function sendquery()
|
---|
576 | {
|
---|
577 | getdbsetup
|
---|
578 | printprocesslog "INFO sendquery QUERY: "$query
|
---|
579 | if ! val=`mysql -s -u $us --password=$pw --host=$ho $db -e " $query "`
|
---|
580 | then
|
---|
581 | printprocesslog "ERROR could not query db (program: $program, function sendquery)"
|
---|
582 | return 1
|
---|
583 | fi
|
---|
584 | if [ "$val" = "NULL" ]
|
---|
585 | then
|
---|
586 | val=
|
---|
587 | fi
|
---|
588 | echo $val
|
---|
589 | return 0
|
---|
590 | }
|
---|
591 |
|
---|