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source: trunk/MagicSoft/Mars/mjobs/MJCalibrateSignal.cc@ 8988

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Last change on this file since 8988 was 8988, checked in by tbretz, 16 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	!
20	! Copyright: MAGIC Software Development, 2000-2008
21	!
22	!
23	\* ======================================================================== */
24
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibrateSignal
28	//
29	// This class is reading the output written by callisto. It calibrates
30	// signal and time.
31	//
32	// The signal and time extractors are read from the callisto-output. In
33	// pricipal you could overwrite these default using the resource file,
34	// but this is NOT recommended!
35	//
36	/////////////////////////////////////////////////////////////////////////////
37	#include "MJCalibrateSignal.h"
38
39	#include <TEnv.h>
40	#include <TFile.h>
41
42	// Core
43	#include "MLog.h"
44	#include "MLogManip.h"
45
46	#include "MDirIter.h"
47	#include "MTaskList.h"
48	#include "MParList.h"
49	#include "MEvtLoop.h"
50
51	#include "MStatusDisplay.h"
52
53	// General containers
54	#include "MGeomCam.h"
55	#include "MBadPixelsCam.h"
56	#include "MCalibConstCam.h"
57	#include "MPedestalCam.h"
58	#include "MArrivalTimeCam.h"
59
60	// General histograms
61	#include "MH3.h"
62	#include "MHCamEvent.h"
63	#include "MHVsTime.h"
64
65	// Calibration containers
66	#include "MCalibrationQECam.h"
67	#include "MCalibrationBlindCam.h"
68	#include "MCalibrationChargeCam.h"
69	#include "MCalibrationRelTimeCam.h"
70	#include "MCalibrationChargePINDiode.h"
71
72	// Calibration histograms
73	#include "MHCalibrationChargeCam.h"
74	#include "MHCalibrationChargeBlindCam.h"
75	#include "MHCalibrationChargePINDiode.h"
76	#include "MHCalibrationRelTimeCam.h"
77
78	// Tasks
79	#include "MReadMarsFile.h"
80	#include "MRawFileRead.h"
81	#include "MTaskEnv.h"
82	#include "MContinue.h"
83	#include "MFillH.h"
84	#include "MGeomApply.h"
85	#include "MExtractTimeAndCharge.h"
86	#include "MTriggerPatternDecode.h"
87	#include "MCalibrationPatternDecode.h"
88	#include "MCalibrationChargeCalc.h"
89	#include "MCalibrationRelTimeCalc.h"
90	#include "MCalibCalcFromPast.h"
91	#include "MPedestalSubtract.h"
92	#include "MPedCalcFromLoGain.h"
93	#include "MCalibrateData.h"
94	#include "MExtractPINDiode.h"
95	#include "MExtractBlindPixel.h"
96	#include "MCalibrateRelTimes.h"
97	#include "MBadPixelsCalc.h"
98	#include "MBadPixelsTreat.h"
99	#include "MWriteRootFile.h"
100
101	// Filter
102	#include "MFTriggerPattern.h"
103	#include "MFCosmics.h"
104	#include "MFilterList.h"
105	#include "MFDataPhrase.h"
106
107	// Classes for writing movies
108	#include "MFEvtNumber.h"
109	#include "MMoviePrepare.h"
110	#include "MMovieWrite.h"
111	#include "MImgCleanStd.h"
112
113
114	ClassImp(MJCalibrateSignal);
115
116	using namespace std;
117
118	// --------------------------------------------------------------------------
119	//
120	// Default constructor.
121	//
122	// Sets:
123	// - fIsInterlaced to kTRUE
124	// - fIsRelTimesUpdate to kFALSE
125	// - fIsHiLoCalibration to kFALSE
126	//
127	MJCalibrateSignal::MJCalibrateSignal(const char name, const char title)
128	: fExtractor(0), fIsInterlaced(kTRUE), fIsRelTimesUpdate(kTRUE), fIsMovieMode(kFALSE)
129	{
130	fName = name ? name : "MJCalibrateSignal";
131	fTitle = title ? title : "Tool to calibrate data";
132	}
133
134	MJCalibrateSignal::~MJCalibrateSignal()
135	{
136	if (fExtractor)
137	delete fExtractor;
138	}
139
140	void MJCalibrateSignal::SetExtractor(const MExtractor *ext)
141	{
142	if (fExtractor)
143	delete fExtractor;
144
145	fExtractor = ext ? (MExtractor*)ext->Clone() : NULL;
146	}
147
148	Bool_t MJCalibrateSignal::WriteResult() const
149	{
150	if (IsNoStorage() \|\| fIsMovieMode)
151	return kTRUE;
152
153	// FIXME: This is not nice because it will update the signal
154	// file always. Which might make the usage outside of
155	// callisto difficult.
156	TObjArray cont;
157	cont.Add(const_cast<TEnv*>(GetEnv()));
158	cont.Add(const_cast<MSequence*>(&fSequence));
159
160	if (fDisplay)
161	{
162	TString title = "-- Calibrate Signal: ";
163	title += fSequence.GetSequence();
164	title += " --";
165	fDisplay->SetTitle(title, kFALSE);
166
167	cont.Add(fDisplay);
168	}
169
170	const TString name(Form("signal%08d.root", fSequence.GetSequence()));
171	return WriteContainer(cont, name, "UPDATE");
172	}
173
174	Bool_t MJCalibrateSignal::ReadCalibration(TObjArray &l, MBadPixelsCam &cam, MExtractor* &ext2, MExtractor* &ext3, TString &geom) const
175	{
176	TString fname = Form("%s/calib%08d.root", fPathIn.Data(), fSequence.GetSequence());
177
178	*fLog << inf << "Reading from file: " << fname << endl;
179
180	TFile file(fname, "READ");
181	if (!file.IsOpen())
182	{
183	*fLog << err << dbginf << "ERROR - Could not open file " << fname << endl;
184	return kFALSE;
185	}
186
187	TObject *o = file.Get("ExtractSignal");
188	if (o && !o->InheritsFrom(MExtractor::Class()))
189	{
190	*fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
191	return kFALSE;
192	}
193	ext3 = o ? (MExtractor*)o->Clone() : NULL;
194
195	o = file.Get("ExtractTime");
196	if (o && !o->InheritsFrom(MExtractor::Class()))
197	{
198	*fLog << err << dbginf << "ERROR - ExtractTime read from " << fname << " doesn't inherit from MExtractor!" << endl;
199	return kFALSE;
200	}
201	ext2 = o ? (MExtractor*)o->Clone() : NULL;
202	if (!ext3 && !ext2)
203	{
204	*fLog << err << dbginf << "ERROR - Neither ExtractSignal nor ExrtractTime found in " << fname << "!" << endl;
205	return kFALSE;
206	}
207
208	o = file.Get("MGeomCam");
209	if (o && !o->InheritsFrom(MGeomCam::Class()))
210	{
211	*fLog << err << dbginf << "ERROR - MGeomCam read from " << fname << " doesn't inherit from MGeomCam!" << endl;
212	return kFALSE;
213	}
214	geom = o ? o->ClassName() : "";
215
216	TObjArray cont(l);
217	cont.Add(&cam);
218	return ReadContainer(cont);
219	}
220
221	// --------------------------------------------------------------------------
222	//
223	// MJCalibration allows to setup several option by a resource file:
224	// MJCalibrateSignal.RawData: yes,no
225	//
226	// For more details see the class description and the corresponding Getters
227	//
228	Bool_t MJCalibrateSignal::CheckEnvLocal()
229	{
230	SetInterlaced(GetEnv("Interlaced", fIsInterlaced));
231	SetRelTimesUpdate(GetEnv("RelTimesUpdate", fIsRelTimesUpdate));
232	SetMovieMode(GetEnv("MovieMode", fIsMovieMode));
233
234	return MJCalib::CheckEnvLocal();
235	}
236
237	Bool_t MJCalibrateSignal::Process(MPedestalCam &pedcamab, MPedestalCam &pedcambias,
238	MPedestalCam &pedcamextr)
239	{
240	if (!fSequence.IsValid())
241	{
242	*fLog << err << "ERROR - Sequence invalid..." << endl;
243	return kFALSE;
244	}
245
246	*fLog << inf;
247	fLog->Separator(GetDescriptor());
248	*fLog << "Calculate calibrated data from Sequence #";
249	*fLog << fSequence.GetSequence() << endl << endl;
250
251
252	//if (!CheckEnv())
253	// return kFALSE;
254
255	CheckEnv();
256
257	// --------------------------------------------------------------------------------
258
259	MDirIter iter;
260	if (fSequence.IsValid())
261	{
262	if (fSequence.SetupDatRuns(iter, 0, !fSequence.IsMonteCarlo())<=0)
263	return kFALSE;
264	}
265
266	// Read File
267	MHCalibrationChargeCam hchacam;
268	MHCalibrationChargeBlindCam hbndcam;
269	MHCalibrationChargePINDiode hpndiod;
270	MHCalibrationRelTimeCam hrelcam;
271	//MHCalibrationHiLoCam hilocam;
272	//MHCalibrationPulseTimeCam hpulcam;
273
274	hchacam.SetOscillations(kFALSE);
275	hbndcam.SetOscillations(kFALSE);
276	hrelcam.SetOscillations(kFALSE);
277
278	MCalibrationChargeCam calcam;
279	MCalibrationQECam qecam;
280	MCalibrationBlindCam bndcam;
281	MCalibrationChargePINDiode pind;
282	MCalibrationRelTimeCam tmcam;
283	//MCalibrationHiLoCam hilcam;
284	//MCalibrationPulseTimeCam pulcam;
285
286	MBadPixelsCam badpix;
287
288	TObjArray interlacedcont;
289	if (fIsInterlaced)
290	{
291	interlacedcont.Add(&hchacam);
292	if (IsUseBlindPixel())
293	interlacedcont.Add(&hbndcam);
294	if (IsUsePINDiode())
295	interlacedcont.Add(&hpndiod);
296	if (fIsRelTimesUpdate)
297	interlacedcont.Add(&hrelcam);
298	}
299
300	MExtractor *extractor1=fExtractor;
301	MExtractor *extractor2=0;
302	MExtractor *extractor3=0;
303	TString geom;
304
305	TObjArray calibcont;
306	calibcont.Add(&calcam);
307	calibcont.Add(&qecam);
308	calibcont.Add(&bndcam);
309	calibcont.Add(&tmcam);
310	if (IsUseBlindPixel())
311	calibcont.Add(&bndcam);
312
313	if (!ReadCalibration(calibcont, badpix, extractor2, extractor3, geom))
314	return kFALSE;
315
316	*fLog << all;
317	if (!geom.IsNull())
318	*fLog << inf << "Camera geometry found in file: " << geom << endl;
319	else
320	*fLog << inf << "No Camera geometry found using default <MGeomCamMagic>" << endl;
321
322	if (extractor3)
323	{
324	*fLog << underline << "Signal Extractor found in calibration file" << endl;
325	extractor3->Print();
326	*fLog << endl;
327	}
328	else
329	*fLog << inf << "No Signal Extractor: ExtractSignal in file." << endl;
330
331
332	if (extractor1)
333	{
334	*fLog << underline << "Modified Signal Extractor set by user." << endl;
335	extractor1->Print();
336	*fLog << endl;
337	}
338	else
339	{
340	*fLog << inf << "No modified Signal Extractor set by user... using ExtractSignal." << endl;
341	extractor1 = extractor3 ? (MExtractor*)extractor3->Clone() : 0;
342	}
343
344	if (extractor2)
345	{
346	*fLog << underline << "Time Extractor found in calibration file" << endl;
347	extractor2->Print();
348	*fLog << endl;
349	}
350	else
351	*fLog << inf << "No Time Extractor: ExtractTime in file." << endl;
352
353	// This is necessary for the case in which it is not in the files
354	MCalibConstCam constcam;
355
356	//MBadPixelsCam badcam;
357	constcam.SetBadPixels(&badpix);
358
359	// Setup Parlist
360	MParList plist;
361	plist.AddToList(this); // take care of fDisplay!
362	plist.AddToList(&badpix);
363	plist.AddToList(&constcam);
364	//plist.AddToList(&hilcam);
365	plist.AddToList(&calibcont); // Using AddToList(TObjArray *)
366	plist.AddToList(&interlacedcont); // Using AddToList(TObjArray *)
367	//plist.AddToList(&pulcam);
368
369	// Setup Tasklist
370	MTaskList tlist;
371	plist.AddToList(&tlist);
372
373	MReadMarsFile readmc("Events");
374	readmc.DisableAutoScheme();
375
376	MRawFileRead rawread(NULL);
377	rawread.SetForceMode(); // Ignore broken time-stamps
378
379	MRead read = fSequence.IsMonteCarlo() ? (MRead)&readmc : (MRead*)&rawread;
380	read->AddFiles(iter);
381
382	const TString fname(Form("%s{s/_D_/_Y_}{s/\\.raw$/.root}{s/\\.raw\\.gz$/.root}", fPathOut.Data()));
383
384	// Skips MC which have no contents. This are precisely the
385	// events which fullfilled the MC Lvl1 trigger and an
386	// arbitrary cut (typically at 50phe) to speed up simulation
387	MContinue contmc("MRawEvtData.GetNumPixels<0.5", "ContEmptyMC");
388
389	//MPointingPosInterpolate pextr;
390	//pextr.AddFiles(&iter);
391
392	MGeomApply apply; // Only necessary to create geometry
393	if (!geom.IsNull())
394	apply.SetGeometry(geom);
395	//MBadPixelsMerge merge(&badpix);
396
397	// Make sure that pedcamab has the correct name
398	pedcamab.SetName("MPedestalFundamental");
399	pedcamextr.SetName("MPedestalFromExtractorRndm");
400	pedcambias.SetName("MPedestalFromExtractor");
401	plist.AddToList(&pedcamextr);
402	plist.AddToList(&pedcambias);
403	plist.AddToList(&pedcamab);
404
405	MArrivalTimeCam timecam;
406	plist.AddToList(&timecam);
407
408	// Check for interleaved events
409	MCalibrationPatternDecode caldec;
410	MTriggerPatternDecode decode;
411
412	MH3 hpat("MRawRunHeader.fRunNumber", "MTriggerPattern.GetUnprescaled");
413	hpat.SetWeight("1./MRawRunHeader.GetRunLength");
414	hpat.SetName("TrigPat");
415	hpat.SetTitle("Rate of the trigger pattern [Hz];Run Number;Trigger Pattern;Rate [Hz]");
416	hpat.InitLabels(MH3::kLabelsXY);
417	//hpat.DefineLabelsY("1=Lvl1;2=Cal;3=Cal;4=Lvl2;5=Cal;7=Cal;8=Ped;9=Ped+Trig;13=Ped+Trig;16=Pin;32=Sum");
418	hpat.DefaultLabelY("UNKNOWN");
419	hpat.DefineLabelY( 0, "0"); // 0: No pattern
420	hpat.DefineLabelY( 1, "Trig"); // 1: Lvl1
421	hpat.DefineLabelY( 2, "Cal"); // 2: Cal
422	hpat.DefineLabelY( 3, "Cal"); // Cal+Lvl1
423	hpat.DefineLabelY( 4, "Trig"); // 4: Lvl2
424	hpat.DefineLabelY( 5, "Trig"); // Lvl2+Lvl1
425	hpat.DefineLabelY( 7, "Cal"); // Lvl2+Cal+Lvl
426	hpat.DefineLabelY( 8, "Ped"); // 8: Ped
427	hpat.DefineLabelY( 9, "Ped+Trig"); // Ped+Lvl1
428	hpat.DefineLabelY(10, "Ped+Cal"); // Ped+Cal
429	hpat.DefineLabelY(12, "Ped+Trig"); // Ped+Lvl2
430	hpat.DefineLabelY(13, "Ped+Trig"); // Ped+Lvl2+Lvl1
431	hpat.DefineLabelY(16, "Pin"); // 16: Pin
432	hpat.DefineLabelY(32, "Sum"); // 32: Sum
433	hpat.DefineLabelY(33, "Trig"); // Sum+Lvl1
434	hpat.DefineLabelY(34, "Cal"); // Sum+Cal
435	hpat.DefineLabelY(35, "Cal"); // Sum+Cal+Lvl1
436	hpat.DefineLabelY(36, "Trig"); // Sum+Lvl2
437	hpat.DefineLabelY(37, "Trig"); // Sum+Lvl1+Lvl2
438	hpat.DefineLabelY(39, "Cal"); // Sum+Lvl2+Cal+Lvl1
439
440	MFillH fillpat(&hpat, "", "FillPattern");
441	fillpat.SetDrawOption("box");
442
443	// This will make that for data with version less than 5, where
444	// trigger patterns were not yet correct, all the events in the real
445	// data file will be processed. In any case there are no interleaved
446	// calibration events in such data, so this is fine.
447	// We allow only cosmics triggered events to pass (before prescaling)
448	MFTriggerPattern fcalped("SelectTrigEvts");
449	fcalped.SetInverted();
450	fcalped.SetDefault(kTRUE);
451	fcalped.DenyAll();
452	fcalped.AllowTriggerLvl1();
453	fcalped.AllowTriggerLvl2();
454	fcalped.AllowSumTrigger();
455
456	// This will skip interleaved events with a cal- or ped-trigger
457	MContinue contcalped(&fcalped, "ContNonTrigger");
458
459	// Create the pedestal subtracted raw-data
460	MPedestalSubtract pedsub;
461	pedsub.SetPedestalCam(&pedcamab);
462
463	// Do signal and pedestal calculation
464	MPedCalcFromLoGain pedlo1("MPedCalcFundamental");
465	pedlo1.SetPedestalUpdate(kTRUE);
466	pedlo1.SetNamePedestalCamOut("MPedestalFundamental");
467
468	MPedCalcFromLoGain pedlo2("MPedCalcWithExtractorRndm");
469	pedlo2.SetPedestalUpdate(kTRUE);
470	pedlo2.SetRandomCalculation(kTRUE);
471	pedlo2.SetNamePedestalCamOut("MPedestalFromExtractorRndm");
472
473	MPedCalcFromLoGain pedlo3("MPedCalcWithExtractor");
474	pedlo3.SetPedestalUpdate(kTRUE);
475	pedlo3.SetRandomCalculation(kFALSE);
476	pedlo3.SetNamePedestalCamOut("MPedestalFromExtractor");
477
478	if (!extractor1)
479	{
480	*fLog << err << "ERROR - extractor1 == NULL" << endl;
481	return kFALSE;
482	}
483
484	// Setup to use the hi-gain extraction window in the lo-gain
485	// range (the start of the lo-gain range is added automatically
486	// by MPedCalcFromLoGain)
487	//
488	// The window size of the extractor is not yet initialized,
489	// so we have to stick to the extraction range
490	//
491	// Even if we would like to use a range comparable to the
492	// hi-gain extraction we use the lo-gain range to make
493	// sure that exclusions (eg. due to switching noise)
494	// are correctly handled.
495	//
496	pedlo1.SetRangeFromExtractor(*extractor1);
497
498	if (extractor1->InheritsFrom("MExtractTimeAndCharge"))
499	{
500	pedlo2.SetExtractor((MExtractTimeAndCharge*)extractor1);
501	pedlo3.SetExtractor((MExtractTimeAndCharge*)extractor1);
502	}
503	else
504	{
505	pedlo2.SetRangeFromExtractor(*extractor1);
506	pedlo3.SetRangeFromExtractor(*extractor1);
507	}
508
509	//------------------------------
510	//
511	// this is the filter to find pedestal events. For the Siegen FADC
512	// these are all events which are not calibration events because
513	// the pedestal is extracted from the lo-gain signal. For MUX
514	// data this are artifiially triggered events with the pedestal
515	// trigger flag, and for safty without Lvl1 or Lvl2 flag)
516	//
517	// For the time "before" the trigger pattern all events (Siegen FADC)
518	// can be considered to be pedestal, because this was also the time
519	// without artifially calibration events
520	//
521	// Deny or allow is done before prescaling.
522	//
523	MFTriggerPattern fped("SelectPedestals");
524	fped.SetDefault(kTRUE);
525	fped.DenyCalibration();
526	if (!extractor1->HasLoGain())
527	{
528	fped.DenyAll();
529	fped.RequirePedestal();
530	}
531
532	//------------------------------
533	//
534	// Apply a filter against cosmics (this is to make sure that the
535	// trigger system was working properly and no empty events survive)
536	// For every event 5% of the pixel must not be empty. In PostProcess
537	// an error is raised if more than 50% of the events were skipped.
538	//
539	MFCosmics fcosmicscal;
540	fcosmicscal.SetNamePedestalCam("MPedestalFundamental"); //CORRECT?
541	fcosmicscal.SetMaxEmptyPixels(0.05);
542	fcosmicscal.SetMaxAcceptedFraction(0.5);
543
544	MContinue contcoscal(&fcosmicscal, "ContCosmicsCal");
545
546	//------------------------------
547	/*
548	MFCosmics fcosmicsped; // Def=20% empty pixels
549	fcosmicsped.SetNamePedestalCam("MPedestalFundamental"); //CORRECT?
550	MContinue contcosped(&fcosmicsped, "ContCosmicsPed");
551	contcosped.SetInverted();
552	*/
553
554	//------------------------------
555	//
556	// Thie signal extractors
557	//
558	MTaskEnv taskenv1("ExtractSignal");
559	MTaskEnv taskenv2("ExtractTime");
560	MTaskEnv taskenv3("ExtractInterlaced");
561	taskenv1.SetDefault(extractor1);
562	taskenv2.SetDefault(extractor2);
563	taskenv3.SetDefault(extractor3);
564
565	//
566	// This is new calibration to photo-electrons, hard-coded
567	// as decided at the Wuerzburg software meeting 26.01.05
568	//
569	MCalibrateData calib;
570	calib.SetSignalType(MCalibrateData::kPhe);
571	//calib.AddPedestal("Fundamental");
572	calib.AddPedestal("FromExtractor");
573	calib.AddPedestal("FromExtractorRndm");
574	calib.SetPedestalFlag(MCalibrateData::kEvent);
575
576	//----------------------------------------------------------
577
578	MExtractPINDiode pinext;
579	MExtractBlindPixel bldext;
580
581	// Execute for all events with the calibration trigger. If no
582	// trigger pattern is available do not execute it
583	// The selection is done before prescaling.
584	MFTriggerPattern fcalib("SelectCalEvts");
585	fcalib.SetDefault(kFALSE);
586	fcalib.DenyAll();
587	fcalib.RequireCalibration();
588	fcalib.AllowTriggerLvl1();
589	fcalib.AllowTriggerLvl2();
590	fcalib.AllowSumTrigger();
591
592	MCalibrationChargeCalc chcalc;
593	chcalc.SetContinousCalibration();
594	chcalc.SetExtractor(extractor3);
595
596	MCalibrationRelTimeCalc recalc;
597	MCalibCalcFromPast pacalc;
598
599	chcalc.SetPedestals(&pedcamextr);
600
601	pacalc.SetChargeCalc(&chcalc);
602	if (fIsRelTimesUpdate)
603	pacalc.SetRelTimeCalc(&recalc);
604	pacalc.SetCalibrate(&calib);
605
606	//
607	// Calibration histogramming
608	//
609	MFillH filpin(&hpndiod, "MExtractedSignalPINDiode", "FillPINDiode");
610	MFillH filbnd(&hbndcam, "MExtractedSignalBlindPixel", "FillBlindCam");
611	MFillH filcam(&hchacam, "MExtractedSignalCam", "FillChargeCam");
612	MFillH filtme(&hrelcam, "MArrivalTimeCam", "FillRelTime");
613	//MFillH filhil(&hilocam, "MExtractedSignalCam", "FillHiLoRatio");
614	//MFillH filpul(&hpulcam, "MRawEvtData", "FillPulseTime");
615	filpin.SetBit(MFillH::kDoNotDisplay);
616	filbnd.SetBit(MFillH::kDoNotDisplay);
617	filcam.SetBit(MFillH::kDoNotDisplay);
618	filtme.SetBit(MFillH::kDoNotDisplay);
619	//filhil.SetBit(MFillH::kDoNotDisplay);
620	//filpul.SetBit(MFillH::kDoNotDisplay);
621
622	MCalibrateRelTimes caltm;
623	MBadPixelsCalc bpcal;
624	MBadPixelsTreat treat;
625
626	//bpcal.SetNamePedPhotCam("MPedPhotFromExtractor");
627	bpcal.SetNamePedPhotCam("MPedPhotFromExtractorRndm");
628
629	//treat.AddNamePedPhotCam("MPedPhotFundamental");
630	treat.AddNamePedPhotCam("MPedPhotFromExtractor");
631	treat.AddNamePedPhotCam("MPedPhotFromExtractorRndm");
632	if (!extractor2 && !extractor1->InheritsFrom("MExtractTimeAndCharge"))
633	treat.SetProcessTimes(kFALSE);
634
635	MHCamEvent evt0( 0, "PedFLG", "Fundamental Pedestal from Lo Gain;;P [cnts/sl]");
636	MHCamEvent evt1( 2, "PedRmsFLG", "RMS from Extractor applied to ped.;;\\sigma_{p} [cnts/sl]");
637	MHCamEvent evt2( 0, "Extra'd", "Extracted Signal;;S [cnts/sl]");
638	// MHCamEvent evt3(4, "PedPhot", "Calibrated Pedestal;;P [phe]");
639	MHCamEvent evt4( 5, "PedRMS", "Calibrated RMS from Extractor applied to ped.;;\\sigma_{p} [phe]");
640	MHCamEvent evt5( 0, "Interp'd", "Interpolated Signal scaled with A/A_{0};;S [phe]");
641	MHCamEvent evt6(102, "Unsuitable", "Fraction of unsuitable events per Pixel;;[1]");
642	// MHCamEvent evt7( 6, "Times", "Calibrated Arrival Time;;T [fadc sl]");
643	MHCamEvent evt8( 0, "Conv", "Calibration Conv. Factors;;[phe/cnts]");
644	MHCamEvent evt9( 7, "PulsePos", "Pulse Position of cosmics (>50phe);;T [ns]");
645	MHCamEvent evtR( 4, "HiLoCal", "Hi-/Lo-Gain ratio;;Ratio");
646	MHCamEvent evtO( 7, "HiLoOff", "Lo-/Hi-Gain Offset;;Offset");
647	MHCamEvent evtC( 4, "CalPos", "Extracted pulse position of calibration pulses;;T [sl]");
648	//MHCamEvent evt2(0, "Extra'd", "Extracted Calibration Signal;;S [cnts/sl]");
649	evt2.SetErrorSpread(kFALSE);
650	evt5.SetErrorSpread(kFALSE);
651	evt6.SetErrorSpread(kFALSE);
652	evt6.SetThreshold();
653
654	MFillH fill0(&evt0, "MPedestalFundamental", "FillPedFLG");
655	MFillH fill1(&evt1, "MPedestalFromExtractorRndm", "FillPedRmsFLG");
656	MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtracted");
657	// MFillH fill3(&evt3, "MPedPhotFundamental", "FillPedPhot");
658	MFillH fill4(&evt4, "MPedPhotFromExtractorRndm", "FillPedRMS");
659	MFillH fill5(&evt5, "MSignalCam", "FillInterpolated");
660	MFillH fill6(&evt6, "MBadPixelsCam", "FillUnsuitable");
661	// MFillH fill7(&evt7, "MSignalCam", "FillTimes");
662	MFillH fill8(&evt8, "MCalibConstCam", "FillConv");
663	MFillH fill9(&evt9, "MSignalCam", "FillPulsePos");
664	MFillH fillR(&evtR, "MExtractedSignalCam", "FillHiLoCal");
665	MFillH fillO(&evtO, "MArrivalTimeCam", "FillHiLoOff");
666	MFillH fillC(&evtC, "MArrivalTimeCam", "FillCalPos");
667	//MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtractedSignal");
668
669	MHVsTime histbp("MBadPixelsCam.GetNumUnsuitable");
670	histbp.SetName("BadPixTm");
671	histbp.SetTitle("Number of unsuitable pixels;;N");
672	histbp.SetMinimum(0);
673
674	MHVsTime histdp("MSignalCam.GetNumPixelsUnmapped");
675	histdp.SetName("DeadPixTm");
676	histdp.SetTitle("Number of dead/unmapped pixels;;N");
677	histdp.SetMinimum(0);
678
679	// Task to fill the histogram
680	MFillH fillB(&histbp, "MTime", "FillBadPixTm");
681	MFillH fillD(&histdp, "MTime", "FillDeadPixTm");
682	fillB.SetNameTab("BadPixTm");
683	fillD.SetNameTab("DeadPixTm");
684
685	/*
686	MFillH fillP("MHPulseShape", "", "FillPulseShape");
687	fillP.SetNameTab("Pulse");
688	*/
689
690	/*
691	MHVsTime hbadpix("MBadPixelsCam.GetNumUnsuitable");
692	hbadpix.SetNumEvents(50);
693	MFillH fillB(&hbadpix, "MTime");
694	*/
695
696	MTaskEnv fillflorian("FinalFantasy");
697	fillflorian.SetDefault();
698
699	// The second rule is for the case reading raw-files!
700	MWriteRootFile write(2, fname, fOverwrite?"RECREATE":"NEW");
701	// Run Header
702	write.AddContainer("MRawRunHeader", "RunHeaders");
703	// write.AddContainer("MBadPixelsCam", "RunHeaders");
704	write.AddContainer("MGeomCam", "RunHeaders");
705	// Monte Carlo Headers
706	write.AddContainer("MMcRunHeader", "RunHeaders", kFALSE);
707	write.AddContainer("MMcFadcHeader", "RunHeaders", kFALSE);
708	write.AddContainer("MMcTrigHeader", "RunHeaders", kFALSE);
709	write.AddContainer("MMcConfigRunHeader", "RunHeaders", kFALSE);
710	write.AddContainer("MMcCorsikaRunHeader", "RunHeaders", kFALSE);
711	// Monte Carlo
712	write.AddContainer("MMcEvt", "Events", kFALSE);
713	write.AddContainer("MMcTrig", "Events", kFALSE);
714	// Data tree
715	write.AddContainer("MSignalCam", "Events");
716	// write.AddContainer("MPedPhotFundamental", "Events");
717	write.AddContainer("MPedPhotFromExtractor", "Events");
718	write.AddContainer("MPedPhotFromExtractorRndm", "Events");
719	write.AddContainer("MTime", "Events", kFALSE);
720	write.AddContainer("MRawEvtHeader", "Events");
721	write.AddContainer("MTriggerPattern", "Events");
722
723	// Trees with slow-control information (obsolete
724	// if we don't read merpped root-files)
725	write.AddTree("Trigger", kFALSE);
726	write.AddTree("Drive", kFALSE);
727	write.AddTree("CC", kFALSE);
728	write.AddTree("Pyrometer", kFALSE);
729	write.AddTree("Currents", kFALSE);
730	write.AddTree("Camera", kFALSE);
731	// Slow-Control: Current-tree
732	write.AddContainer("MCameraDC", "Currents", kFALSE);
733	// Slow-Control: Camera-tree
734	write.AddContainer("MCameraAUX", "Camera", kFALSE);
735	write.AddContainer("MCameraCalibration", "Camera", kFALSE);
736	write.AddContainer("MCameraCooling", "Camera", kFALSE);
737	write.AddContainer("MCameraHV", "Camera", kFALSE);
738	write.AddContainer("MCameraLV", "Camera", kFALSE);
739	write.AddContainer("MCameraLids", "Camera", kFALSE);
740
741	// Write the special MC tree
742	MWriteRootFile writemc(2, fname, fOverwrite?"RECREATE":"NEW");
743	writemc.SetName("WriteMC");
744	writemc.AddContainer("MMcEvtBasic", "OriginalMC");
745
746	// Write the special calib tree
747	/*
748	MWriteRootFile writecal(2, fname, fOverwrite?"RECREATE":"NEW");
749	writecal.SetName("WriteCalib");
750	writecal.AddContainer("MBadPixelsCam", "Calib");
751	writecal.AddContainer("MCalibrationChargeCam", "Calib");
752	writecal.AddContainer("MCalibrationRelTimeCam", "Calib");
753	*/
754
755	//-----------------------------------------------------------
756	// Build tasklist
757
758	MTaskList tlist2;
759
760	tlist2.AddToList(&caldec);
761	tlist2.AddToList(&decode);
762	tlist2.AddToList(&fillpat);
763	tlist2.AddToList(&apply);
764	//tlist2.AddToList(&merge);
765	tlist2.AddToList(&pedsub);
766
767	//-----------------------------------------------------------
768	// Pedestal extraction
769
770	MTaskList tlist3;
771	tlist3.SetFilter(&fped); // Deny events with cal-trigger
772
773	tlist2.AddToList(&fped); // If no lo-gain require ped-trigger
774	tlist2.AddToList(&tlist3); // and deny cosmics (lvl1/2) trigger
775
776	tlist3.AddToList(&pedlo1); // extract pedestal events
777	tlist3.AddToList(&pedlo2); // extract pedestal events
778	tlist3.AddToList(&pedlo3); // extract pedestal events
779	tlist3.AddToList(&fill0); // fill pedestal events
780	tlist3.AddToList(&fill1); // fill pedestal events
781
782	//-----------------------------------------------------------
783	// Calibration
784
785	MTaskList tlist4;
786	tlist4.SetFilter(&fcalib); // process only events with cal-trigger
787
788	//MFDataPhrase filcalco("MCalibrationConstCam.IsReadyToSave>0.5", "CalibConstFilter");
789	if (fIsInterlaced)
790	{
791	// The task list is executed for all events with the calibration
792	// trigger
793	tlist2.AddToList(&fcalib); // MFTriggerPattern
794	tlist2.AddToList(&tlist4);
795
796	tlist4.AddToList(&taskenv3);
797	tlist4.AddToList(&contcoscal); // MContinue/ContCosmicsCal
798	if (IsUsePINDiode())
799	tlist4.AddToList(&pinext); // MExtractPINDiode
800	if (IsUseBlindPixel())
801	tlist4.AddToList(&bldext); // MExtractBlindPixel
802	tlist4.AddToList(&pacalc); // MCalibCalcFromPast
803	/*
804	tlist3.AddToList(&filcalco); // CalibConstFilter (IsReadyToSave)
805	fill8.SetFilter(&filcalco);
806	tlist3.AddToList(&fill8); // FillConvUpd
807	*/
808
809	tlist4.AddToList(&filcam); // FillChargeCam
810	if (fIsRelTimesUpdate)
811	tlist4.AddToList(&filtme); // FillRelTime
812	if (IsUseBlindPixel())
813	tlist4.AddToList(&filbnd); // FillBlindCam
814	if (IsUsePINDiode())
815	tlist4.AddToList(&filpin); // FillPINDiode
816	tlist4.AddToList(&chcalc); // MCalibrationChargeCalc
817	if (fIsRelTimesUpdate)
818	tlist4.AddToList(&recalc); // MCalibrationRelTimeCam
819
820	tlist4.AddToList(&fillC); // FillCalPos
821
822	//tlist3.AddToList(&writecal); // MWriteRootFile
823	}
824
825	//-----------------------------------------------------------
826	// Cosmics extraction
827
828	// remove all events with a cal- or ped-trigger (no matter
829	// whether they have lvl1 or lvl2 or any other flag
830	tlist2.AddToList(&contcalped);
831
832	// Extract the signal
833	if (extractor1)
834	tlist2.AddToList(&taskenv1);
835
836	// remove all events which definitly don't have a signal
837	// using MFCosmics (ContCosmicsPed)
838	// tlist2.AddToList(&contcosped);
839
840	// Extract arrival time (if a dedicated extrator given)
841	if (extractor2)
842	tlist2.AddToList(&taskenv2);
843
844	/*
845	if (fIsHiLoCalibration)
846	{
847	plist.AddToList(&hilocam);
848	tlist2.AddToList(&filhil);
849	}
850
851	if (fIsPulsePosCheck)
852	{
853	plist.AddToList(&hpulcam);
854	tlist2.AddToList(&filpul);
855	}
856	*/
857
858	tlist2.AddToList(&fill2);
859	tlist2.AddToList(&fill8); // FillConv
860	tlist2.AddToList(&calib); // MCalibrateData
861	if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
862	tlist2.AddToList(&caltm);
863
864	tlist2.AddToList(&bpcal); // MBadPixelsCalc
865	tlist2.AddToList(&treat); // MBadPixelsTreat
866	tlist2.AddToList(&fill6);
867	// tlist2.AddToList(&fill3);
868	tlist2.AddToList(&fill4);
869	tlist2.AddToList(&fill5);
870	//if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
871	// tlist2.AddToList(&fill7);
872	tlist2.AddToList(&fill9);
873	if (!fSequence.IsMonteCarlo())
874	{
875	tlist2.AddToList(&fillB);
876	tlist2.AddToList(&fillD);
877	}
878	if (extractor1->HasLoGain())
879	{
880	tlist2.AddToList(&fillR);
881	tlist2.AddToList(&fillO);
882	}
883
884	/*
885	MFillH fillC("MHCleaning", "", "FillClean");
886	tlist2.AddToList(&fillC);
887
888	//tlist2.AddToList(&fillP);
889	*/
890
891	// ----- Start: Code for encoding movies -----
892
893	MMoviePrepare movprep;
894	MMovieWrite movwrite;
895	movprep.SetRangeFromExtractor(*extractor1);
896
897	//MFDataPhrase movfilt("MMovieData.fMax>150");
898	MFDataPhrase movfilt("MMovieData.fMax>5*MMovieData.fMedianPedestalRms", "MovieFilter");
899
900	MImgCleanStd movclean(8.5, 4.0);
901	movclean.SetMethod(MImgCleanStd::kAbsolute);
902
903	//movprep.SetFilter(&evtnum);
904	movclean.SetFilter(&movfilt);
905	movwrite.SetFilter(&movfilt);
906
907	MTaskList tlistmov("MovieEncoder");
908	tlistmov.AddToList(&movprep);
909	tlistmov.AddToList(&movfilt);
910	tlistmov.AddToList(&movclean);
911	tlistmov.AddToList(&movwrite);
912
913	MFEvtNumber evtnum;
914	//evtnum.SetSelector("ThetaSquared.fVal<0.04");
915	//evtnum.SetFileName("ganymed00000001.root");
916	tlistmov.SetFilter(&evtnum);
917
918	if (fIsMovieMode)
919	{
920	tlist2.AddToList(&evtnum);
921	tlist2.AddToList(&tlistmov);
922	}
923
924	// ----- End: Code for encoding movies -----
925
926	tlist2.AddToList(&fillflorian);
927
928	// Setup List for Drive-tree
929	//MPointingPosCalc pcalc;
930
931	// Now setup main tasklist
932	tlist.AddToList(read);
933
934	if (fSequence.IsMonteCarlo())
935	{
936	if (!fIsMovieMode && !HasNullOut())
937	tlist.AddToList(&writemc);
938	tlist.AddToList(&contmc);
939	}
940
941	//if (IsUseRootData())
942	// tlist2.AddToList(&pextr);
943	tlist.AddToList(&tlist2, fSequence.IsMonteCarlo() ? "Events" : "All");
944
945	//if (fSequence.IsMonteCarlo())
946	// tlist.AddToList(&pcalc, "Drive");
947
948	if (!fIsMovieMode && !HasNullOut())
949	tlist.AddToList(&write);
950
951	// Create and setup the eventloop
952	MEvtLoop evtloop(fName);
953	evtloop.SetParList(&plist);
954	evtloop.SetDisplay(fDisplay);
955	evtloop.SetLogStream(fLog);
956	if (!SetupEnv(evtloop))
957	return kFALSE;
958
959	// Execute first analysis
960	const Bool_t rc = evtloop.Eventloop(fMaxEvents);
961
962	// make sure owned object are deleted
963	if (extractor1 && extractor1!=fExtractor)
964	delete extractor1;
965	if (extractor2)
966	delete extractor2;
967	if (extractor3)
968	delete extractor3;
969
970	// return if job failed
971	if (!rc)
972	{
973	*fLog << err << GetDescriptor() << ": Failed." << endl;
974	return kFALSE;
975	}
976
977	// if everything went ok write and display result
978	DisplayResult(plist);
979
980	/*
981	if (fIsPixelCheck)
982	{
983	if (fIsPulsePosCheck)
984	hpulcam[fCheckedPixId].DrawClone("");
985
986	//if (fIsHiLoCalibration)
987	// hilocam[fCheckedPixId].DrawClone("");
988	}
989	interlacedcont.Add(&pulcam);
990	*/
991
992	//if (fIsHiLoCalibration)
993	// interlacedcont.Add(&hilcam);
994
995	//if (fIsPulsePosCheck)
996	// interlacedcont.Add(plist.FindObject("MHCalibrationPulseTimeCam"));
997
998	//if (fIsHiLoCalibration)
999	// interlacedcont.Add(plist.FindObject("MHCalibrationHiLoCam"));
1000
1001	if (!WriteResult())
1002	return kFALSE;
1003
1004	// return if job went ok
1005	*fLog << all << GetDescriptor() << ": Done." << endl;
1006	*fLog << endl << endl;
1007
1008	return kTRUE;
1009	}
1010
1011
1012	void MJCalibrateSignal::DisplayResult(MParList &plist)
1013	{
1014	/*
1015	if (!fDisplay \|\| !fIsHiLoCalibration)
1016	return;
1017
1018	MCalibrationHiLoCam hcam = (MCalibrationHiLoCam)plist.FindObject("MCalibrationHiLoCam");
1019	MGeomCam geom = (MGeomCam)plist.FindObject("MGeomCam");
1020	if (!hcam \|\| !geom)
1021	return;
1022
1023	// Create histograms to display
1024	MHCamera disp1(*geom, "HiLoConv", "Ratio Amplification HiGain vs. LoGain (Charges)");
1025	MHCamera disp2(*geom, "HiLoDiff", "Arrival Time Diff. HiGain vs. LoGain (Times)");
1026
1027	disp1.SetCamContent(*hcam, 0);
1028	disp1.SetCamError( *hcam, 1);
1029	disp2.SetCamContent(*hcam, 5);
1030	disp2.SetCamError( *hcam, 6);
1031
1032	disp1.SetYTitle("R [1]");
1033	disp2.SetYTitle("\\Delta T [FADC sl.]");
1034
1035	TCanvas &c1 = fDisplay->AddTab("HiLoConv");
1036	c1.Divide(2,3);
1037
1038	disp1.CamDraw(c1, 1, 2, 1);
1039	disp2.CamDraw(c1, 2, 2, 1);
1040	*/
1041	}
1042

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