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source: trunk/MagicSoft/Mars/mjobs/MJCalibrateSignal.cc@ 8964

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Last change on this file since 8964 was 8954, checked in by tbretz, 16 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	!
20	! Copyright: MAGIC Software Development, 2000-2008
21	!
22	!
23	\* ======================================================================== */
24
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibrateSignal
28	//
29	// This class is reading the output written by callisto. It calibrates
30	// signal and time.
31	//
32	// The signal and time extractors are read from the callisto-output. In
33	// pricipal you could overwrite these default using the resource file,
34	// but this is NOT recommended!
35	//
36	/////////////////////////////////////////////////////////////////////////////
37	#include "MJCalibrateSignal.h"
38
39	#include <TEnv.h>
40	#include <TFile.h>
41
42	// Core
43	#include "MLog.h"
44	#include "MLogManip.h"
45
46	#include "MDirIter.h"
47	#include "MTaskList.h"
48	#include "MParList.h"
49	#include "MEvtLoop.h"
50
51	#include "MStatusDisplay.h"
52
53	// General containers
54	#include "MGeomCam.h"
55	#include "MBadPixelsCam.h"
56	#include "MCalibConstCam.h"
57	#include "MPedestalCam.h"
58	#include "MArrivalTimeCam.h"
59
60	// General histograms
61	#include "MH3.h"
62	#include "MHCamEvent.h"
63	#include "MHVsTime.h"
64
65	// Calibration containers
66	#include "MCalibrationQECam.h"
67	#include "MCalibrationBlindCam.h"
68	#include "MCalibrationChargeCam.h"
69	#include "MCalibrationRelTimeCam.h"
70	#include "MCalibrationChargePINDiode.h"
71
72	// Calibration histograms
73	#include "MHCalibrationChargeCam.h"
74	#include "MHCalibrationChargeBlindCam.h"
75	#include "MHCalibrationChargePINDiode.h"
76	#include "MHCalibrationRelTimeCam.h"
77
78	// Tasks
79	#include "MReadMarsFile.h"
80	#include "MRawFileRead.h"
81	#include "MTaskEnv.h"
82	#include "MContinue.h"
83	#include "MFillH.h"
84	#include "MGeomApply.h"
85	#include "MExtractTimeAndCharge.h"
86	#include "MTriggerPatternDecode.h"
87	#include "MCalibrationPatternDecode.h"
88	#include "MCalibrationChargeCalc.h"
89	#include "MCalibrationRelTimeCalc.h"
90	#include "MCalibCalcFromPast.h"
91	#include "MPedestalSubtract.h"
92	#include "MPedCalcFromLoGain.h"
93	#include "MCalibrateData.h"
94	#include "MExtractPINDiode.h"
95	#include "MExtractBlindPixel.h"
96	#include "MCalibrateRelTimes.h"
97	#include "MBadPixelsCalc.h"
98	#include "MBadPixelsTreat.h"
99	#include "MWriteRootFile.h"
100
101	// Filter
102	#include "MFTriggerPattern.h"
103	#include "MFCosmics.h"
104	#include "MFilterList.h"
105	#include "MFDataPhrase.h"
106
107	// Classes for writing movies
108	#include "MFEvtNumber.h"
109	#include "MMoviePrepare.h"
110	#include "MMovieWrite.h"
111	#include "MImgCleanStd.h"
112
113
114	ClassImp(MJCalibrateSignal);
115
116	using namespace std;
117
118	// --------------------------------------------------------------------------
119	//
120	// Default constructor.
121	//
122	// Sets:
123	// - fIsInterlaced to kTRUE
124	// - fIsRelTimesUpdate to kFALSE
125	// - fIsHiLoCalibration to kFALSE
126	//
127	MJCalibrateSignal::MJCalibrateSignal(const char name, const char title)
128	: fExtractor(0), fIsInterlaced(kTRUE), fIsRelTimesUpdate(kTRUE), fIsMovieMode(kFALSE)
129	{
130	fName = name ? name : "MJCalibrateSignal";
131	fTitle = title ? title : "Tool to calibrate data";
132	}
133
134	MJCalibrateSignal::~MJCalibrateSignal()
135	{
136	if (fExtractor)
137	delete fExtractor;
138	}
139
140	void MJCalibrateSignal::SetExtractor(const MExtractor *ext)
141	{
142	if (fExtractor)
143	delete fExtractor;
144
145	fExtractor = ext ? (MExtractor*)ext->Clone() : NULL;
146	}
147
148	Bool_t MJCalibrateSignal::WriteResult() const
149	{
150	if (IsNoStorage() \|\| fIsMovieMode)
151	return kTRUE;
152
153	// FIXME: This is not nice because it will update the signal
154	// file always. Which might make the usage outside of
155	// callisto difficult.
156	TObjArray cont;
157	cont.Add(const_cast<TEnv*>(GetEnv()));
158	cont.Add(const_cast<MSequence*>(&fSequence));
159
160	if (fDisplay)
161	cont.Add(fDisplay);
162
163	const TString name(Form("signal%08d.root", fSequence.GetSequence()));
164	return WriteContainer(cont, name, "UPDATE");
165	}
166
167	Bool_t MJCalibrateSignal::ReadCalibration(TObjArray &l, MBadPixelsCam &cam, MExtractor* &ext2, MExtractor* &ext3, TString &geom) const
168	{
169	TString fname = Form("%s/calib%08d.root", fPathIn.Data(), fSequence.GetSequence());
170
171	*fLog << inf << "Reading from file: " << fname << endl;
172
173	TFile file(fname, "READ");
174	if (!file.IsOpen())
175	{
176	*fLog << err << dbginf << "ERROR - Could not open file " << fname << endl;
177	return kFALSE;
178	}
179
180	TObject *o = file.Get("ExtractSignal");
181	if (o && !o->InheritsFrom(MExtractor::Class()))
182	{
183	*fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
184	return kFALSE;
185	}
186	ext3 = o ? (MExtractor*)o->Clone() : NULL;
187
188	o = file.Get("ExtractTime");
189	if (o && !o->InheritsFrom(MExtractor::Class()))
190	{
191	*fLog << err << dbginf << "ERROR - ExtractTime read from " << fname << " doesn't inherit from MExtractor!" << endl;
192	return kFALSE;
193	}
194	ext2 = o ? (MExtractor*)o->Clone() : NULL;
195	if (!ext3 && !ext2)
196	{
197	*fLog << err << dbginf << "ERROR - Neither ExtractSignal nor ExrtractTime found in " << fname << "!" << endl;
198	return kFALSE;
199	}
200
201	o = file.Get("MGeomCam");
202	if (o && !o->InheritsFrom(MGeomCam::Class()))
203	{
204	*fLog << err << dbginf << "ERROR - MGeomCam read from " << fname << " doesn't inherit from MGeomCam!" << endl;
205	return kFALSE;
206	}
207	geom = o ? o->ClassName() : "";
208
209	TObjArray cont(l);
210	cont.Add(&cam);
211	return ReadContainer(cont);
212	}
213
214	// --------------------------------------------------------------------------
215	//
216	// MJCalibration allows to setup several option by a resource file:
217	// MJCalibrateSignal.RawData: yes,no
218	//
219	// For more details see the class description and the corresponding Getters
220	//
221	Bool_t MJCalibrateSignal::CheckEnvLocal()
222	{
223	SetInterlaced(GetEnv("Interlaced", fIsInterlaced));
224	SetRelTimesUpdate(GetEnv("RelTimesUpdate", fIsRelTimesUpdate));
225	SetMovieMode(GetEnv("MovieMode", fIsMovieMode));
226
227	return MJCalib::CheckEnvLocal();
228	}
229
230	#include "MParameterCalc.h" // FIXME
231	Bool_t MJCalibrateSignal::Process(MPedestalCam &pedcamab, MPedestalCam &pedcambias,
232	MPedestalCam &pedcamextr)
233	{
234	if (!fSequence.IsValid())
235	{
236	*fLog << err << "ERROR - Sequence invalid..." << endl;
237	return kFALSE;
238	}
239
240	*fLog << inf;
241	fLog->Separator(GetDescriptor());
242	*fLog << "Calculate calibrated data from Sequence #";
243	*fLog << fSequence.GetSequence() << endl << endl;
244
245
246	//if (!CheckEnv())
247	// return kFALSE;
248
249	CheckEnv();
250
251	// --------------------------------------------------------------------------------
252
253	MDirIter iter;
254	if (fSequence.IsValid())
255	{
256	if (fSequence.SetupDatRuns(iter, 0, !fSequence.IsMonteCarlo())<=0)
257	return kFALSE;
258	}
259
260	// Read File
261	MHCalibrationChargeCam hchacam;
262	MHCalibrationChargeBlindCam hbndcam;
263	MHCalibrationChargePINDiode hpndiod;
264	MHCalibrationRelTimeCam hrelcam;
265	//MHCalibrationHiLoCam hilocam;
266	//MHCalibrationPulseTimeCam hpulcam;
267
268	hchacam.SetOscillations(kFALSE);
269	hbndcam.SetOscillations(kFALSE);
270	hrelcam.SetOscillations(kFALSE);
271
272	MCalibrationChargeCam calcam;
273	MCalibrationQECam qecam;
274	MCalibrationBlindCam bndcam;
275	MCalibrationChargePINDiode pind;
276	MCalibrationRelTimeCam tmcam;
277	//MCalibrationHiLoCam hilcam;
278	//MCalibrationPulseTimeCam pulcam;
279
280	MBadPixelsCam badpix;
281
282	TObjArray interlacedcont;
283	if (fIsInterlaced)
284	{
285	interlacedcont.Add(&hchacam);
286	if (IsUseBlindPixel())
287	interlacedcont.Add(&hbndcam);
288	if (IsUsePINDiode())
289	interlacedcont.Add(&hpndiod);
290	if (fIsRelTimesUpdate)
291	interlacedcont.Add(&hrelcam);
292	}
293
294	MExtractor *extractor1=fExtractor;
295	MExtractor *extractor2=0;
296	MExtractor *extractor3=0;
297	TString geom;
298
299	TObjArray calibcont;
300	calibcont.Add(&calcam);
301	calibcont.Add(&qecam);
302	calibcont.Add(&bndcam);
303	calibcont.Add(&tmcam);
304	if (IsUseBlindPixel())
305	calibcont.Add(&bndcam);
306
307	if (!ReadCalibration(calibcont, badpix, extractor2, extractor3, geom))
308	return kFALSE;
309
310	*fLog << all;
311	if (!geom.IsNull())
312	*fLog << inf << "Camera geometry found in file: " << geom << endl;
313	else
314	*fLog << inf << "No Camera geometry found using default <MGeomCamMagic>" << endl;
315
316	if (extractor3)
317	{
318	*fLog << underline << "Signal Extractor found in calibration file" << endl;
319	extractor3->Print();
320	*fLog << endl;
321	}
322	else
323	*fLog << inf << "No Signal Extractor: ExtractSignal in file." << endl;
324
325
326	if (extractor1)
327	{
328	*fLog << underline << "Modified Signal Extractor set by user." << endl;
329	extractor1->Print();
330	*fLog << endl;
331	}
332	else
333	{
334	*fLog << inf << "No modified Signal Extractor set by user... using ExtractSignal." << endl;
335	extractor1 = extractor3 ? (MExtractor*)extractor3->Clone() : 0;
336	}
337
338	if (extractor2)
339	{
340	*fLog << underline << "Time Extractor found in calibration file" << endl;
341	extractor2->Print();
342	*fLog << endl;
343	}
344	else
345	*fLog << inf << "No Time Extractor: ExtractTime in file." << endl;
346
347	// This is necessary for the case in which it is not in the files
348	MCalibConstCam constcam;
349
350	//MBadPixelsCam badcam;
351	constcam.SetBadPixels(&badpix);
352
353	// Setup Parlist
354	MParList plist;
355	plist.AddToList(this); // take care of fDisplay!
356	plist.AddToList(&badpix);
357	plist.AddToList(&constcam);
358	//plist.AddToList(&hilcam);
359	plist.AddToList(&calibcont); // Using AddToList(TObjArray *)
360	plist.AddToList(&interlacedcont); // Using AddToList(TObjArray *)
361	//plist.AddToList(&pulcam);
362
363	// Setup Tasklist
364	MTaskList tlist;
365	plist.AddToList(&tlist);
366
367	MReadMarsFile readmc("Events");
368	readmc.DisableAutoScheme();
369
370	MRawFileRead rawread(NULL);
371	rawread.SetForceMode(); // Ignore broken time-stamps
372
373	MRead read = fSequence.IsMonteCarlo() ? (MRead)&readmc : (MRead*)&rawread;
374	read->AddFiles(iter);
375
376	const TString fname(Form("%s{s/_D_/_Y_}{s/\\.raw$/.root}{s/\\.raw\\.gz$/.root}", fPathOut.Data()));
377
378	// Skips MC which have no contents. This are precisely the
379	// events which fullfilled the MC Lvl1 trigger and an
380	// arbitrary cut (typically at 50phe) to speed up simulation
381	MContinue contmc("MRawEvtData.GetNumPixels<0.5", "ContEmptyMC");
382
383	//MPointingPosInterpolate pextr;
384	//pextr.AddFiles(&iter);
385
386	MGeomApply apply; // Only necessary to create geometry
387	if (!geom.IsNull())
388	apply.SetGeometry(geom);
389	//MBadPixelsMerge merge(&badpix);
390
391	// Make sure that pedcamab has the correct name
392	pedcamab.SetName("MPedestalFundamental");
393	pedcamextr.SetName("MPedestalFromExtractorRndm");
394	pedcambias.SetName("MPedestalFromExtractor");
395	plist.AddToList(&pedcamextr);
396	plist.AddToList(&pedcambias);
397	plist.AddToList(&pedcamab);
398
399	MArrivalTimeCam timecam;
400	plist.AddToList(&timecam);
401
402	// Check for interleaved events
403	MCalibrationPatternDecode caldec;
404	MTriggerPatternDecode decode;
405
406	MH3 hpat("MRawRunHeader.fRunNumber", "MTriggerPattern.GetUnprescaled");
407	hpat.SetWeight("1./MRawRunHeader.GetRunLength");
408	hpat.SetName("TrigPat");
409	hpat.SetTitle("Rate of the trigger pattern [Hz];Run Number;Trigger Pattern;Rate [Hz]");
410	hpat.InitLabels(MH3::kLabelsXY);
411	//hpat.DefineLabelsY("1=Lvl1;2=Cal;3=Cal;4=Lvl2;5=Cal;7=Cal;8=Ped;9=Ped+Trig;13=Ped+Trig;16=Pin;32=Sum");
412	hpat.DefaultLabelY("UNKNOWN");
413	hpat.DefineLabelY( 0, "0"); // 0: No pattern
414	hpat.DefineLabelY( 1, "Trig"); // 1: Lvl1
415	hpat.DefineLabelY( 2, "Cal"); // 2: Cal
416	hpat.DefineLabelY( 3, "Cal"); // Cal+Lvl1
417	hpat.DefineLabelY( 4, "Trig"); // 4: Lvl2
418	hpat.DefineLabelY( 5, "Trig"); // Lvl2+Lvl1
419	hpat.DefineLabelY( 7, "Cal"); // Lvl2+Cal+Lvl
420	hpat.DefineLabelY( 8, "Ped"); // 8: Ped
421	hpat.DefineLabelY( 9, "Ped+Trig"); // Ped+Lvl1
422	hpat.DefineLabelY(10, "Ped+Cal"); // Ped+Cal
423	hpat.DefineLabelY(12, "Ped+Trig"); // Ped+Lvl2
424	hpat.DefineLabelY(13, "Ped+Trig"); // Ped+Lvl2+Lvl1
425	hpat.DefineLabelY(16, "Pin"); // 16: Pin
426	hpat.DefineLabelY(32, "Sum"); // 32: Sum
427	hpat.DefineLabelY(33, "Trig"); // Sum+Lvl1
428	hpat.DefineLabelY(34, "Cal"); // Sum+Cal
429	hpat.DefineLabelY(35, "Cal"); // Sum+Cal+Lvl1
430	hpat.DefineLabelY(36, "Trig"); // Sum+Lvl2
431	hpat.DefineLabelY(37, "Trig"); // Sum+Lvl1+Lvl2
432	hpat.DefineLabelY(39, "Cal"); // Sum+Lvl2+Cal+Lvl1
433
434	MFillH fillpat(&hpat, "", "FillPattern");
435	fillpat.SetDrawOption("box");
436
437	// This will make that for data with version less than 5, where
438	// trigger patterns were not yet correct, all the events in the real
439	// data file will be processed. In any case there are no interleaved
440	// calibration events in such data, so this is fine.
441	// We allow only cosmics triggered events to pass (before prescaling)
442	MFTriggerPattern fcalped("SelectTrigEvts");
443	fcalped.SetInverted();
444	fcalped.SetDefault(kTRUE);
445	fcalped.DenyAll();
446	fcalped.AllowTriggerLvl1();
447	fcalped.AllowTriggerLvl2();
448	fcalped.AllowSumTrigger();
449
450	// This will skip interleaved events with a cal- or ped-trigger
451	MContinue contcalped(&fcalped, "ContNonTrigger");
452
453	// Create the pedestal subtracted raw-data
454	MPedestalSubtract pedsub;
455	pedsub.SetPedestalCam(&pedcamab);
456
457	// Do signal and pedestal calculation
458	MPedCalcFromLoGain pedlo1("MPedCalcFundamental");
459	pedlo1.SetPedestalUpdate(kTRUE);
460	pedlo1.SetNamePedestalCamOut("MPedestalFundamental");
461
462	MPedCalcFromLoGain pedlo2("MPedCalcWithExtractorRndm");
463	pedlo2.SetPedestalUpdate(kTRUE);
464	pedlo2.SetRandomCalculation(kTRUE);
465	pedlo2.SetNamePedestalCamOut("MPedestalFromExtractorRndm");
466
467	MPedCalcFromLoGain pedlo3("MPedCalcWithExtractor");
468	pedlo3.SetPedestalUpdate(kTRUE);
469	pedlo3.SetRandomCalculation(kFALSE);
470	pedlo3.SetNamePedestalCamOut("MPedestalFromExtractor");
471
472	if (!extractor1)
473	{
474	*fLog << err << "ERROR - extractor1 == NULL" << endl;
475	return kFALSE;
476	}
477
478	// Setup to use the hi-gain extraction window in the lo-gain
479	// range (the start of the lo-gain range is added automatically
480	// by MPedCalcFromLoGain)
481	//
482	// The window size of the extractor is not yet initialized,
483	// so we have to stick to the extraction range
484	//
485	// Even if we would like to use a range comparable to the
486	// hi-gain extraction we use the lo-gain range to make
487	// sure that exclusions (eg. due to switching noise)
488	// are correctly handled.
489	//
490	pedlo1.SetRangeFromExtractor(*extractor1);
491
492	if (extractor1->InheritsFrom("MExtractTimeAndCharge"))
493	{
494	pedlo2.SetExtractor((MExtractTimeAndCharge*)extractor1);
495	pedlo3.SetExtractor((MExtractTimeAndCharge*)extractor1);
496	}
497	else
498	{
499	pedlo2.SetRangeFromExtractor(*extractor1);
500	pedlo3.SetRangeFromExtractor(*extractor1);
501	}
502
503	//------------------------------
504	//
505	// this is the filter to find pedestal events. For the Siegen FADC
506	// these are all events which are not calibration events because
507	// the pedestal is extracted from the lo-gain signal. For MUX
508	// data this are artifiially triggered events with the pedestal
509	// trigger flag, and for safty without Lvl1 or Lvl2 flag)
510	//
511	// For the time "before" the trigger pattern all events (Siegen FADC)
512	// can be considered to be pedestal, because this was also the time
513	// without artifially calibration events
514	//
515	// Deny or allow is done before prescaling.
516	//
517	MFTriggerPattern fped("SelectPedestals");
518	fped.SetDefault(kTRUE);
519	fped.DenyCalibration();
520	if (!extractor1->HasLoGain())
521	{
522	fped.DenyAll();
523	fped.RequirePedestal();
524	}
525
526	//------------------------------
527	//
528	// Apply a filter against cosmics (this is to make sure that the
529	// trigger system was working properly and no empty events survive)
530	// For every event 5% of the pixel must not be empty. In PostProcess
531	// an error is raised if more than 50% of the events were skipped.
532	//
533	MFCosmics fcosmicscal;
534	fcosmicscal.SetNamePedestalCam("MPedestalFundamental"); //CORRECT?
535	fcosmicscal.SetMaxEmptyPixels(0.05);
536	fcosmicscal.SetMaxAcceptedFraction(0.5);
537
538	MContinue contcoscal(&fcosmicscal, "ContCosmicsCal");
539
540	//------------------------------
541	/*
542	MFCosmics fcosmicsped; // Def=20% empty pixels
543	fcosmicsped.SetNamePedestalCam("MPedestalFundamental"); //CORRECT?
544	MContinue contcosped(&fcosmicsped, "ContCosmicsPed");
545	contcosped.SetInverted();
546	*/
547
548	//------------------------------
549	//
550	// Thie signal extractors
551	//
552	MTaskEnv taskenv1("ExtractSignal");
553	MTaskEnv taskenv2("ExtractTime");
554	MTaskEnv taskenv3("ExtractInterlaced");
555	taskenv1.SetDefault(extractor1);
556	taskenv2.SetDefault(extractor2);
557	taskenv3.SetDefault(extractor3);
558
559	//
560	// This is new calibration to photo-electrons, hard-coded
561	// as decided at the Wuerzburg software meeting 26.01.05
562	//
563	MCalibrateData calib;
564	calib.SetSignalType(MCalibrateData::kPhe);
565	//calib.AddPedestal("Fundamental");
566	calib.AddPedestal("FromExtractor");
567	calib.AddPedestal("FromExtractorRndm");
568	calib.SetPedestalFlag(MCalibrateData::kEvent);
569
570	//----------------------------------------------------------
571
572	MExtractPINDiode pinext;
573	MExtractBlindPixel bldext;
574
575	// Execute for all events with the calibration trigger. If no
576	// trigger pattern is available do not execute it
577	// The selection is done before prescaling.
578	MFTriggerPattern fcalib("SelectCalEvts");
579	fcalib.SetDefault(kFALSE);
580	fcalib.DenyAll();
581	fcalib.RequireCalibration();
582	fcalib.AllowTriggerLvl1();
583	fcalib.AllowTriggerLvl2();
584	fcalib.AllowSumTrigger();
585
586	MCalibrationChargeCalc chcalc;
587	chcalc.SetContinousCalibration();
588	chcalc.SetExtractor(extractor3);
589
590	MCalibrationRelTimeCalc recalc;
591	MCalibCalcFromPast pacalc;
592
593	chcalc.SetPedestals(&pedcamextr);
594
595	pacalc.SetChargeCalc(&chcalc);
596	if (fIsRelTimesUpdate)
597	pacalc.SetRelTimeCalc(&recalc);
598	pacalc.SetCalibrate(&calib);
599
600	//
601	// Calibration histogramming
602	//
603	MFillH filpin(&hpndiod, "MExtractedSignalPINDiode", "FillPINDiode");
604	MFillH filbnd(&hbndcam, "MExtractedSignalBlindPixel", "FillBlindCam");
605	MFillH filcam(&hchacam, "MExtractedSignalCam", "FillChargeCam");
606	MFillH filtme(&hrelcam, "MArrivalTimeCam", "FillRelTime");
607	//MFillH filhil(&hilocam, "MExtractedSignalCam", "FillHiLoRatio");
608	//MFillH filpul(&hpulcam, "MRawEvtData", "FillPulseTime");
609	filpin.SetBit(MFillH::kDoNotDisplay);
610	filbnd.SetBit(MFillH::kDoNotDisplay);
611	filcam.SetBit(MFillH::kDoNotDisplay);
612	filtme.SetBit(MFillH::kDoNotDisplay);
613	//filhil.SetBit(MFillH::kDoNotDisplay);
614	//filpul.SetBit(MFillH::kDoNotDisplay);
615
616	MCalibrateRelTimes caltm;
617	MBadPixelsCalc bpcal;
618	MBadPixelsTreat treat;
619
620	//bpcal.SetNamePedPhotCam("MPedPhotFromExtractor");
621	bpcal.SetNamePedPhotCam("MPedPhotFromExtractorRndm");
622
623	//treat.AddNamePedPhotCam("MPedPhotFundamental");
624	treat.AddNamePedPhotCam("MPedPhotFromExtractor");
625	treat.AddNamePedPhotCam("MPedPhotFromExtractorRndm");
626	if (!extractor2 && !extractor1->InheritsFrom("MExtractTimeAndCharge"))
627	treat.SetProcessTimes(kFALSE);
628
629	MHCamEvent evt0( 0, "PedFLG", "Fundamental Pedestal from Lo Gain;;P [cnts/sl]");
630	MHCamEvent evt1( 2, "PedRmsFLG", "RMS from Extractor applied to ped.;;\\sigma_{p} [cnts/sl]");
631	MHCamEvent evt2( 0, "Extra'd", "Extracted Signal;;S [cnts/sl]");
632	// MHCamEvent evt3(4, "PedPhot", "Calibrated Pedestal;;P [phe]");
633	MHCamEvent evt4( 5, "PedRMS", "Calibrated RMS from Extractor applied to ped.;;\\sigma_{p} [phe]");
634	MHCamEvent evt5( 0, "Interp'd", "Interpolated Signal scaled with A/A_{0};;S [phe]");
635	MHCamEvent evt6(102, "Unsuitable", "Fraction of unsuitable events per Pixel;;[1]");
636	// MHCamEvent evt7( 6, "Times", "Calibrated Arrival Time;;T [fadc sl]");
637	MHCamEvent evt8( 0, "Conv", "Calibration Conv. Factors;;[phe/cnts]");
638	MHCamEvent evt9( 7, "PulsePos", "Pulse Position of cosmics (>50phe);;T [ns]");
639	MHCamEvent evtR( 4, "HiLoCal", "Hi-/Lo-Gain ratio;;Ratio");
640	MHCamEvent evtO( 7, "HiLoOff", "Lo-/Hi-Gain Offset;;Offset");
641	MHCamEvent evtC( 4, "CalPos", "Extracted pulse position of calibration pulses;;T [sl]");
642	//MHCamEvent evt2(0, "Extra'd", "Extracted Calibration Signal;;S [cnts/sl]");
643	evt2.SetErrorSpread(kFALSE);
644	evt5.SetErrorSpread(kFALSE);
645	evt6.SetErrorSpread(kFALSE);
646	evt6.SetThreshold();
647
648	MFillH fill0(&evt0, "MPedestalFundamental", "FillPedFLG");
649	MFillH fill1(&evt1, "MPedestalFromExtractorRndm", "FillPedRmsFLG");
650	MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtracted");
651	// MFillH fill3(&evt3, "MPedPhotFundamental", "FillPedPhot");
652	MFillH fill4(&evt4, "MPedPhotFromExtractorRndm", "FillPedRMS");
653	MFillH fill5(&evt5, "MSignalCam", "FillInterpolated");
654	MFillH fill6(&evt6, "MBadPixelsCam", "FillUnsuitable");
655	// MFillH fill7(&evt7, "MSignalCam", "FillTimes");
656	MFillH fill8(&evt8, "MCalibConstCam", "FillConv");
657	MFillH fill9(&evt9, "MSignalCam", "FillPulsePos");
658	MFillH fillR(&evtR, "MExtractedSignalCam", "FillHiLoCal");
659	MFillH fillO(&evtO, "MArrivalTimeCam", "FillHiLoOff");
660	MFillH fillC(&evtC, "MArrivalTimeCam", "FillCalPos");
661	//MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtractedSignal");
662
663	MHVsTime histbp("MBadPixelsCam.GetNumUnsuitable");
664	histbp.SetName("BadPixTm");
665	histbp.SetTitle("Number of unsuitable pixels;;N");
666	histbp.SetMinimum(0);
667
668	MHVsTime histdp("MSignalCam.GetNumPixelsUnmapped");
669	histdp.SetName("DeadPixTm");
670	histdp.SetTitle("Number of dead/unmapped pixels;;N");
671	histdp.SetMinimum(0);
672
673	// Task to fill the histogram
674	MFillH fillB(&histbp, "MTime", "FillBadPixTm");
675	MFillH fillD(&histdp, "MTime", "FillDeadPixTm");
676	fillB.SetNameTab("BadPixTm");
677	fillD.SetNameTab("DeadPixTm");
678
679	/*
680	MFillH fillP("MHPulseShape", "", "FillPulseShape");
681	fillP.SetNameTab("Pulse");
682	*/
683
684	/*
685	MHVsTime hbadpix("MBadPixelsCam.GetNumUnsuitable");
686	hbadpix.SetNumEvents(50);
687	MFillH fillB(&hbadpix, "MTime");
688	*/
689
690	MTaskEnv fillflorian("FinalFantasy");
691	fillflorian.SetDefault();
692
693	// The second rule is for the case reading raw-files!
694	MWriteRootFile write(2, fname, fOverwrite?"RECREATE":"NEW");
695	// Run Header
696	write.AddContainer("MRawRunHeader", "RunHeaders");
697	// write.AddContainer("MBadPixelsCam", "RunHeaders");
698	write.AddContainer("MGeomCam", "RunHeaders");
699	// Monte Carlo Headers
700	write.AddContainer("MMcRunHeader", "RunHeaders", kFALSE);
701	write.AddContainer("MMcFadcHeader", "RunHeaders", kFALSE);
702	write.AddContainer("MMcTrigHeader", "RunHeaders", kFALSE);
703	write.AddContainer("MMcConfigRunHeader", "RunHeaders", kFALSE);
704	write.AddContainer("MMcCorsikaRunHeader", "RunHeaders", kFALSE);
705	// Monte Carlo
706	write.AddContainer("MMcEvt", "Events", kFALSE);
707	write.AddContainer("MMcTrig", "Events", kFALSE);
708	// Data tree
709	write.AddContainer("MSignalCam", "Events");
710	// write.AddContainer("MPedPhotFundamental", "Events");
711	write.AddContainer("MPedPhotFromExtractor", "Events");
712	write.AddContainer("MPedPhotFromExtractorRndm", "Events");
713	write.AddContainer("MTime", "Events", kFALSE);
714	write.AddContainer("MRawEvtHeader", "Events");
715	write.AddContainer("MTriggerPattern", "Events");
716
717	// Trees with slow-control information (obsolete
718	// if we don't read merpped root-files)
719	write.AddTree("Trigger", kFALSE);
720	write.AddTree("Drive", kFALSE);
721	write.AddTree("CC", kFALSE);
722	write.AddTree("Pyrometer", kFALSE);
723	write.AddTree("Currents", kFALSE);
724	write.AddTree("Camera", kFALSE);
725	// Slow-Control: Current-tree
726	write.AddContainer("MCameraDC", "Currents", kFALSE);
727	// Slow-Control: Camera-tree
728	write.AddContainer("MCameraAUX", "Camera", kFALSE);
729	write.AddContainer("MCameraCalibration", "Camera", kFALSE);
730	write.AddContainer("MCameraCooling", "Camera", kFALSE);
731	write.AddContainer("MCameraHV", "Camera", kFALSE);
732	write.AddContainer("MCameraLV", "Camera", kFALSE);
733	write.AddContainer("MCameraLids", "Camera", kFALSE);
734
735	// Write the special MC tree
736	MWriteRootFile writemc(2, fname, fOverwrite?"RECREATE":"NEW");
737	writemc.SetName("WriteMC");
738	writemc.AddContainer("MMcEvtBasic", "OriginalMC");
739
740	// Write the special calib tree
741	/*
742	MWriteRootFile writecal(2, fname, fOverwrite?"RECREATE":"NEW");
743	writecal.SetName("WriteCalib");
744	writecal.AddContainer("MBadPixelsCam", "Calib");
745	writecal.AddContainer("MCalibrationChargeCam", "Calib");
746	writecal.AddContainer("MCalibrationRelTimeCam", "Calib");
747	*/
748
749	//-----------------------------------------------------------
750	// Build tasklist
751
752	MTaskList tlist2;
753
754	tlist2.AddToList(&caldec);
755	tlist2.AddToList(&decode);
756	tlist2.AddToList(&fillpat);
757	tlist2.AddToList(&apply);
758	//tlist2.AddToList(&merge);
759	tlist2.AddToList(&pedsub);
760
761	//-----------------------------------------------------------
762	// Pedestal extraction
763
764	MTaskList tlist3;
765	tlist3.SetFilter(&fped); // Deny events with cal-trigger
766
767	tlist2.AddToList(&fped); // If no lo-gain require ped-trigger
768	tlist2.AddToList(&tlist3); // and deny cosmics (lvl1/2) trigger
769
770	tlist3.AddToList(&pedlo1); // extract pedestal events
771	tlist3.AddToList(&pedlo2); // extract pedestal events
772	tlist3.AddToList(&pedlo3); // extract pedestal events
773	tlist3.AddToList(&fill0); // fill pedestal events
774	tlist3.AddToList(&fill1); // fill pedestal events
775
776	//-----------------------------------------------------------
777	// Calibration
778
779	MTaskList tlist4;
780	tlist4.SetFilter(&fcalib); // process only events with cal-trigger
781
782	//MFDataPhrase filcalco("MCalibrationConstCam.IsReadyToSave>0.5", "CalibConstFilter");
783	if (fIsInterlaced)
784	{
785	// The task list is executed for all events with the calibration
786	// trigger
787	tlist2.AddToList(&fcalib); // MFTriggerPattern
788	tlist2.AddToList(&tlist4);
789
790	tlist4.AddToList(&taskenv3);
791	tlist4.AddToList(&contcoscal); // MContinue/ContCosmicsCal
792	if (IsUsePINDiode())
793	tlist4.AddToList(&pinext); // MExtractPINDiode
794	if (IsUseBlindPixel())
795	tlist4.AddToList(&bldext); // MExtractBlindPixel
796	tlist4.AddToList(&pacalc); // MCalibCalcFromPast
797	/*
798	tlist3.AddToList(&filcalco); // CalibConstFilter (IsReadyToSave)
799	fill8.SetFilter(&filcalco);
800	tlist3.AddToList(&fill8); // FillConvUpd
801	*/
802
803	tlist4.AddToList(&filcam); // FillChargeCam
804	if (fIsRelTimesUpdate)
805	tlist4.AddToList(&filtme); // FillRelTime
806	if (IsUseBlindPixel())
807	tlist4.AddToList(&filbnd); // FillBlindCam
808	if (IsUsePINDiode())
809	tlist4.AddToList(&filpin); // FillPINDiode
810	tlist4.AddToList(&chcalc); // MCalibrationChargeCalc
811	if (fIsRelTimesUpdate)
812	tlist4.AddToList(&recalc); // MCalibrationRelTimeCam
813
814	tlist4.AddToList(&fillC); // FillCalPos
815
816	//tlist3.AddToList(&writecal); // MWriteRootFile
817	}
818
819	//-----------------------------------------------------------
820	// Cosmics extraction
821
822	// remove all events with a cal- or ped-trigger (no matter
823	// whether they have lvl1 or lvl2 or any other flag
824	tlist2.AddToList(&contcalped);
825
826	// Extract the signal
827	if (extractor1)
828	tlist2.AddToList(&taskenv1);
829
830	// remove all events which definitly don't have a signal
831	// using MFCosmics (ContCosmicsPed)
832	// tlist2.AddToList(&contcosped);
833
834	// Extract arrival time (if a dedicated extrator given)
835	if (extractor2)
836	tlist2.AddToList(&taskenv2);
837
838	/*
839	if (fIsHiLoCalibration)
840	{
841	plist.AddToList(&hilocam);
842	tlist2.AddToList(&filhil);
843	}
844
845	if (fIsPulsePosCheck)
846	{
847	plist.AddToList(&hpulcam);
848	tlist2.AddToList(&filpul);
849	}
850	*/
851
852	tlist2.AddToList(&fill2);
853	tlist2.AddToList(&fill8); // FillConv
854	tlist2.AddToList(&calib); // MCalibrateData
855	if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
856	tlist2.AddToList(&caltm);
857
858	tlist2.AddToList(&bpcal); // MBadPixelsCalc
859	tlist2.AddToList(&treat); // MBadPixelsTreat
860	tlist2.AddToList(&fill6);
861	// tlist2.AddToList(&fill3);
862	tlist2.AddToList(&fill4);
863	tlist2.AddToList(&fill5);
864	//if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
865	// tlist2.AddToList(&fill7);
866	tlist2.AddToList(&fill9);
867	if (!fSequence.IsMonteCarlo())
868	{
869	tlist2.AddToList(&fillB);
870	tlist2.AddToList(&fillD);
871	}
872	if (extractor1->HasLoGain())
873	{
874	tlist2.AddToList(&fillR);
875	tlist2.AddToList(&fillO);
876	}
877
878	/*
879	MFillH fillC("MHCleaning", "", "FillClean");
880	tlist2.AddToList(&fillC);
881
882	//tlist2.AddToList(&fillP);
883	*/
884
885	// ----- Start: Code for encoding movies -----
886
887	MMoviePrepare movprep;
888	MMovieWrite movwrite;
889	movprep.SetRangeFromExtractor(*extractor1);
890
891	//MFDataPhrase movfilt("MMovieData.fMax>150");
892	MFDataPhrase movfilt("MMovieData.fMax>5*MMovieData.fMedianPedestalRms", "MovieFilter");
893
894	MImgCleanStd movclean(8.5, 4.0);
895	movclean.SetMethod(MImgCleanStd::kAbsolute);
896
897	//movprep.SetFilter(&evtnum);
898	movclean.SetFilter(&movfilt);
899	movwrite.SetFilter(&movfilt);
900
901	MTaskList tlistmov("MovieEncoder");
902	tlistmov.AddToList(&movprep);
903	tlistmov.AddToList(&movfilt);
904	tlistmov.AddToList(&movclean);
905	tlistmov.AddToList(&movwrite);
906
907	MFEvtNumber evtnum;
908	//evtnum.SetSelector("ThetaSquared.fVal<0.04");
909	//evtnum.SetFileName("ganymed00000001.root");
910	tlistmov.SetFilter(&evtnum);
911
912	if (fIsMovieMode)
913	{
914	tlist2.AddToList(&evtnum);
915	tlist2.AddToList(&tlistmov);
916	}
917
918	// ----- End: Code for encoding movies -----
919
920	tlist2.AddToList(&fillflorian);
921
922	// Setup List for Drive-tree
923	//MPointingPosCalc pcalc;
924
925	// Now setup main tasklist
926	tlist.AddToList(read);
927
928	if (fSequence.IsMonteCarlo())
929	{
930	if (!fIsMovieMode && !HasNullOut())
931	tlist.AddToList(&writemc);
932	tlist.AddToList(&contmc);
933	}
934
935	//if (IsUseRootData())
936	// tlist2.AddToList(&pextr);
937	tlist.AddToList(&tlist2, fSequence.IsMonteCarlo() ? "Events" : "All");
938
939	//if (fSequence.IsMonteCarlo())
940	// tlist.AddToList(&pcalc, "Drive");
941
942	if (!fIsMovieMode && !HasNullOut())
943	tlist.AddToList(&write);
944
945	// Create and setup the eventloop
946	MEvtLoop evtloop(fName);
947	evtloop.SetParList(&plist);
948	evtloop.SetDisplay(fDisplay);
949	evtloop.SetLogStream(fLog);
950	if (!SetupEnv(evtloop))
951	return kFALSE;
952
953	// Execute first analysis
954	const Bool_t rc = evtloop.Eventloop(fMaxEvents);
955
956	// make sure owned object are deleted
957	if (extractor1 && extractor1!=fExtractor)
958	delete extractor1;
959	if (extractor2)
960	delete extractor2;
961	if (extractor3)
962	delete extractor3;
963
964	// return if job failed
965	if (!rc)
966	{
967	*fLog << err << GetDescriptor() << ": Failed." << endl;
968	return kFALSE;
969	}
970
971	// if everything went ok write and display result
972	DisplayResult(plist);
973
974	/*
975	if (fIsPixelCheck)
976	{
977	if (fIsPulsePosCheck)
978	hpulcam[fCheckedPixId].DrawClone("");
979
980	//if (fIsHiLoCalibration)
981	// hilocam[fCheckedPixId].DrawClone("");
982	}
983	interlacedcont.Add(&pulcam);
984	*/
985
986	//if (fIsHiLoCalibration)
987	// interlacedcont.Add(&hilcam);
988
989	//if (fIsPulsePosCheck)
990	// interlacedcont.Add(plist.FindObject("MHCalibrationPulseTimeCam"));
991
992	//if (fIsHiLoCalibration)
993	// interlacedcont.Add(plist.FindObject("MHCalibrationHiLoCam"));
994
995	if (!WriteResult())
996	return kFALSE;
997
998	// return if job went ok
999	*fLog << all << GetDescriptor() << ": Done." << endl;
1000	*fLog << endl << endl;
1001
1002	return kTRUE;
1003	}
1004
1005
1006	void MJCalibrateSignal::DisplayResult(MParList &plist)
1007	{
1008	/*
1009	if (!fDisplay \|\| !fIsHiLoCalibration)
1010	return;
1011
1012	MCalibrationHiLoCam hcam = (MCalibrationHiLoCam)plist.FindObject("MCalibrationHiLoCam");
1013	MGeomCam geom = (MGeomCam)plist.FindObject("MGeomCam");
1014	if (!hcam \|\| !geom)
1015	return;
1016
1017	// Create histograms to display
1018	MHCamera disp1(*geom, "HiLoConv", "Ratio Amplification HiGain vs. LoGain (Charges)");
1019	MHCamera disp2(*geom, "HiLoDiff", "Arrival Time Diff. HiGain vs. LoGain (Times)");
1020
1021	disp1.SetCamContent(*hcam, 0);
1022	disp1.SetCamError( *hcam, 1);
1023	disp2.SetCamContent(*hcam, 5);
1024	disp2.SetCamError( *hcam, 6);
1025
1026	disp1.SetYTitle("R [1]");
1027	disp2.SetYTitle("\\Delta T [FADC sl.]");
1028
1029	TCanvas &c1 = fDisplay->AddTab("HiLoConv");
1030	c1.Divide(2,3);
1031
1032	disp1.CamDraw(c1, 1, 2, 1);
1033	disp2.CamDraw(c1, 2, 2, 1);
1034	*/
1035	}
1036

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