Changeset 12582 for trunk


Ignore:
Timestamp:
11/21/11 06:56:22 (13 years ago)
Author:
Daniela Dorner
Message:
changed to take into account the current and the 3 previous nights
Location:
trunk/DataCheck
Files:
3 edited

Legend:

Unmodified
Added
Removed

  • trunk/DataCheck/RsyncAux.sh

    r12576 r12582  
    11#!/bin/bash
    2 
    3 date=`date +%Y/%m/%d --date="-1day"`
    42
    53today=`date +%F`
    64logfile=/home/`whoami`/DataCheck/log/RsyncAux$today.log
    75
    8 echo "" >> $logfile 2>&1
    9 echo "" >> $logfile 2>&1
    10 echo "" >> $logfile 2>&1
    11 # auxiliary data directories on data
    12 auxdirdaq=/daq/aux/$date/ # /loc_data from daq via nfs on data
    13 auxdirdata=/loc_data/aux/$date
    14 echo `date`": processing files in "$auxdir >> $logfile 2>&1
     6# get last 3 nights
     7dates=( `date +%Y/%m/%d` `date +%Y/%m/%d --date="-1day"` `date +%Y/%m/%d --date="-2day"` `date +%Y/%m/%d --date="-3day"` )
    158
    16 # get current hour
    17 hour=`date +%k`
    18 # define bwlimit for rsync depending on the time
    19 if [ $hour -lt 8 ] || [ $hour -gt 18 ]
    20 then
    21    # limit bw for rsync to 20 MB/s during night
    22    bwlimit="--bwlimit=20000"
    23    echo "rsync data with "$bwlimit >> $logfile 2>&1
    24 else
    25    # no bw limit during day
    26    echo "rsync data without bwlimit" >> $logfile 2>&1
    27 fi
     9# do rsync for rawfiles of these dates
     10for date in ${dates[@]}
     11do
     12   echo "" >> $logfile 2>&1
     13   echo "" >> $logfile 2>&1
     14   echo "" >> $logfile 2>&1
     15   # auxiliary data directories on data
     16   auxdirdaq=/daq/aux/$date/ # /loc_data from daq via nfs on data
     17   if ! [ -d $auxdirdaq ]
     18   then
     19      echo `date`": "$auxdirdaq" not found. Data were probably taken on data" >> $logfile 2>&1
     20      continue
     21   fi
     22   auxdirdata=/loc_data/aux/$date
     23   echo `date`": processing files in "$auxdirdaq >> $logfile 2>&1
     24   
     25   # get current hour
     26   hour=`date +%k`
     27   # define bwlimit for rsync depending on the time
     28   if [ $hour -lt 8 ] || [ $hour -gt 18 ]
     29   then
     30      # limit bw for rsync to 20 MB/s during night
     31      bwlimit="--bwlimit=20000"
     32      echo "rsync data with "$bwlimit >> $logfile 2>&1
     33   else
     34      # no bw limit during day
     35      echo "rsync data without bwlimit" >> $logfile 2>&1
     36   fi
     37   
     38   #rsync from daq to data
     39   if ! /usr/bin/rsync -avxHP $bwlimit $auxdirdaq $auxdirdata >> $logfile 2>&1
     40   then
     41      echo `date`": problem rsyncing auxiliary data from daq to data"
     42   fi
     43done
    2844
    29 #rsync from daq to data
    30 if ! /usr/bin/rsync -avxHP $bwlimit $auxdirdaq $auxdirdata >> $logfile 2>&1
    31 then
    32    echo `date`": problem rsyncing auxiliary data from daq to data"
    33 fi
    34 
    35 

  • trunk/DataCheck/RsyncRaw.sh

    r12576 r12582  
    11#!/bin/bash
    2 
    3 date=`date +%Y/%m/%d --date="-1day"`
    42
    53today=`date +%F`
    64logfile=/home/`whoami`/DataCheck/log/RsyncRaw$today.log
    75
    8 echo "" >> $logfile 2>&1
    9 echo "" >> $logfile 2>&1
    10 echo "" >> $logfile 2>&1
    11 # raw data directories on data
    12 rawdirdaq=/daq/raw/$date/ # /loc_data from daq via nfs on data
    13 rawdirdata=/loc_data/raw/$date
    14 echo `date`": processing files in "$rawdir >> $logfile 2>&1
     6# get last 3 nights
     7dates=( `date +%Y/%m/%d` `date +%Y/%m/%d --date="-1day"` `date +%Y/%m/%d --date="-2day"` `date +%Y/%m/%d --date="-3day"` )
    158
    16 # get current hour
    17 hour=`date +%k`
    18 # define bwlimit for rsync depending on the time
    19 if [ $hour -lt 8 ] || [ $hour -gt 18 ]
    20 then
    21    # limit bw for rsync to 20 MB/s during night
    22    bwlimit="--bwlimit=20000"
    23    echo "rsync data with "$bwlimit >> $logfile 2>&1
    24 else
    25    # no bw limit during day
    26    echo "rsync data without bwlimit" >> $logfile 2>&1
    27 fi
     9# do rsync for rawfiles of these dates
     10for date in ${dates[@]}
     11do
     12   echo "" >> $logfile 2>&1
     13   echo "" >> $logfile 2>&1
     14   echo "" >> $logfile 2>&1
     15   # raw data directories on data
     16   rawdirdaq=/daq/raw/$date/ # /loc_data from daq via nfs on data
     17   if ! [ -d $rawdirdaq ]
     18   then
     19      echo `date`": "$rawdirdaq" not found. Data were probably taken on data" >> $logfile 2>&1
     20      continue
     21   fi
     22   rawdirdata=/loc_data/raw/$date
     23   echo `date`": processing files in "$rawdirdaq >> $logfile 2>&1
    2824
    29 #rsync from daq to data
    30 if ! /usr/bin/rsync -avxHP $bwlimit $rawdirdaq $rawdirdata >> $logfile 2>&1
    31 then
    32    echo `date`": problem rsyncing rawdata from daq to data"
    33 fi
     25   # get current hour
     26   hour=`date +%k`
     27   # define bwlimit for rsync depending on the time
     28   if [ $hour -lt 8 ] || [ $hour -gt 18 ]
     29   then
     30      # limit bw for rsync to 20 MB/s during night
     31      bwlimit="--bwlimit=20000"
     32      echo "rsync data with "$bwlimit >> $logfile 2>&1
     33   else
     34      # no bw limit during day
     35      echo "rsync data without bwlimit" >> $logfile 2>&1
     36   fi
     37
     38   #rsync from daq to data
     39   if ! /usr/bin/rsync -avxHP $bwlimit $rawdirdaq $rawdirdata >> $logfile 2>&1
     40   then
     41      echo `date`": problem rsyncing rawdata from daq to data"
     42   fi
     43done
    3444
    3545

  • trunk/DataCheck/ZipRawData.sh

    r12575 r12582  
    11#!/bin/bash
    2 
    3 year=`date +%Y --date="-1day"`
    4 month=`date +%m --date="-1day"`
    52
    63today=`date +%F`
    74logfile=/home/`whoami`/DataCheck/log/ZipRaw$today.log
    85
    9 echo "" >> $logfile 2>&1
    10 echo "" >> $logfile 2>&1
    11 echo "" >> $logfile 2>&1
    12 rawdir=/loc_data/raw/$year/$month
    13 echo `date`": processing files in "$rawdir >> $logfile
     6# get last 3 nights
     7dates=( `date +%Y/%m/%d` `date +%Y/%m/%d --date="-1day"` `date +%Y/%m/%d --date="-2day"` `date +%Y/%m/%d --date="-3day"` )
    148
    15 #find all directories in $rawdir
    16 dirs=`find $rawdir -type d | sort`
    17 
    18 echo `date`": create missing directories in /loc_data/zipraw/$year/$month" >> $logfile
    19 for dir in $dirs
     9# do rsync for rawfiles of these dates
     10for date in ${dates[@]}
    2011do
    21    zipdir=`echo $dir | sed -e 's/raw/zipraw/'`
    22    # check if output directory for zip already exists
    23    if [ -d $zipdir ]
    24    then
     12   echo "" >> $logfile 2>&1
     13   echo "" >> $logfile 2>&1
     14   echo "" >> $logfile 2>&1
     15   rawdir=/loc_data/raw/$date
     16   echo `date`": processing files in "$rawdir >> $logfile
     17   # check if data are available from that night
     18   if ! [ -d $rawdir ]
     19   then
     20      echo `date`": no data available in "$rawdir >> $logfile
    2521      continue
    2622   fi
    27    # create output directory for zip
    28    mkdir -pv $zipdir >> $logfile
    29 done
    30 
    31 # find all fits-files starting with the oldest file
    32 echo `date`": finding files to be zipped in $rawdir..." >> $logfile
    33 fitsfiles=`find $rawdir -type f -name '*fits'| sort `
    34 
    35 # loop to zip files
    36 echo `date`": zipping files in $rawdir..." >> $logfile
    37 for file in $fitsfiles
    38 do
    39    # filename for temporary and final zipfile
    40    zipfile=`echo $file | sed -e 's/raw/zipraw/' -e 's/fits/fits.gz/'`
    41    zipfiletmp=`echo $file | sed -e 's/raw/zipraw/' -e 's/fits/fits.tmp.gz/'`
    42    # check if zipped file already exists
    43    if [ -e $zipfile ]
    44    then
    45       continue
     23   zipdir=/loc_data/zipraw/$date
     24   if ! [ -d $zipdir ]
     25   then
     26      # create output directory for zip
     27      mkdir -pv $zipdir >> $logfile
    4628   fi
    4729
    48    # check if files was accessed in the last 30 minutes
    49    isnew=`find $file -amin -30`
    50    if [ "$isnew" != "" ]
    51    then
    52       echo $file" is not older than 30 min => continue" >> $logfile
    53       continue
    54    fi
     30   # find all fits-files starting with the oldest file
     31   echo `date`": finding files to be zipped in $rawdir..." >> $logfile
     32   fitsfiles=`find $rawdir -type f -name '*fits'| sort `
    5533
    56    # check if file is already finished
    57    # original file on daq (if data was taken on daq
    58    origfile=`echo $file | sed -e 's/loc_data/daq/'`
    59    if [ -e $origfile ]
    60    then
    61       # get time of last modification as seconds since Epoch for both files
    62       timeorig=`stat -c %Y $origfile`
    63       timecopy=`stat -c %Y $file`
    64       # compare times
    65       if ! [ $timeorig -eq $timecopy ]
     34   # loop to zip files
     35   echo `date`": zipping files in $rawdir..." >> $logfile
     36   for file in $fitsfiles
     37   do
     38      # filename for temporary and final zipfile
     39      zipfile=`echo $file | sed -e 's/raw/zipraw/' -e 's/fits/fits.gz/'`
     40      zipfiletmp=`echo $file | sed -e 's/raw/zipraw/' -e 's/fits/fits.tmp.gz/'`
     41      # check if zipped file already exists
     42      if [ -e $zipfile ]
    6643      then
    67          # if times are not the same, the file is still open => no zip
    68          echo `date`": file "$file" not yet closed => continue" >> $logfile
    6944         continue
    7045      fi
    71    else
    72       # if the origfile doesn't exist, the data was probably written not on daq but on data
    73       echo `date`": file "$file" was probably taken on data and not daq " >> $logfile
    74    fi
    7546
    76    echo `date`": zipping "$file" to "$zipfile" ..." >> $logfile
    77    # zip file to stdout and pipe it to outputfile
    78    if pigz -1 -c -f $file > $zipfiletmp; 
    79    then
    80       # if successful, move temporary to final zipfile
    81       mv -v $zipfiletmp $zipfile >> $logfile
    82    else
    83       # if not successful, remove temporary zipfile
    84       rm -v $zipfiletmp >> $logfile
    85    fi
     47      # check if raw file was accessed in the last 30 minutes
     48      isnew=`find $file -amin -30`
     49      if [ "$isnew" != "" ]
     50      then
     51         echo $file" is not older than 30 min => continue" >> $logfile
     52         continue
     53      fi
     54
     55      # check if file is already finished
     56      # original file on daq (if data was taken on daq
     57      origfile=`echo $file | sed -e 's/loc_data/daq/'`
     58      if [ -e $origfile ]
     59      then
     60         # get time of last modification as seconds since Epoch for both files
     61         timeorig=`stat -c %Y $origfile`
     62         timecopy=`stat -c %Y $file`
     63         # compare times
     64         if ! [ $timeorig -eq $timecopy ]
     65         then
     66            # if times are not the same, the file is still open => no zip
     67            echo `date`": file "$file" not yet closed => continue" >> $logfile
     68            continue
     69         fi
     70      else
     71         # if the origfile doesn't exist, the data was probably written not on daq but on data
     72         echo `date`": file "$file" was probably taken on data and not daq " >> $logfile
     73      fi
     74
     75      echo `date`": zipping "$file" to "$zipfile" ..." >> $logfile
     76      # zip file to stdout and pipe it to outputfile
     77      if pigz -1 -c -f $file > $zipfiletmp;
     78      then
     79         # if successful, move temporary to final zipfile
     80         mv -v $zipfiletmp $zipfile >> $logfile
     81      else
     82         # if not successful, remove temporary zipfile
     83         rm -v $zipfiletmp >> $logfile
     84      fi
     85   done
    8686done
    8787
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