Ignore:
Timestamp:
10/20/14 12:46:57 (10 years ago)
Author:
ghughes
Message:
mixed some major bigs, removed hardcoded directory stuff, some minor testing still needed but batch full
Location:
branches/Mars_McMismatchStudy/qsub
Files:
4 edited

Legend:

Unmodified
Added
Removed

  • branches/Mars_McMismatchStudy/qsub/FACT.qsub_gan_data.sh

    r17983 r17984  
    88
    99INFILE=$NAME.list
    10 OUTFILE="/home/guest/ghughes/FACT/Mars_McMismatchStudy/OUTPUT/ganymed/"$NAME"_gan.root"
     10OUTDIR=$MARSSYS"/OUTPUT/ganymed/"
     11mkdir -p $OUTDIR
     12OUTFILE=$OUTDIR"/"$NAME"_gan.root"
    1113
    1214root -b -q fact/analysis/ganymed.C\(\"$INFILE\",\"$OUTFILE\",5.5755,22.0144\)

  • branches/Mars_McMismatchStudy/qsub/FACT.qsub_star_data.sh

    r17983 r17984  
    1313SEQDIR="/scratch/fact/sequences/"$YEAR"/"$MONTH"/"$DAY"/"
    1414INDIR="/scratch/fact/data.2013.05.11/callisto/"$YEAR"/"$MONTH"/"$DAY"/"
    15 OUTDIR="/home/guest/ghughes/FACT/Mars_McMismatchStudy/OUTPUT/star/"$DATE"/"
     15OUTDIR=$MARSSYS"/OUTPUT/star/"$DATE"/"
    1616
    17 $TFILE=$MARSSYS"/"$DATE".tempfile"
     17TFILE=${MARSSYS}"/"$DATE".tempfile"
    1818
    19 ls $SEQDIR/$DATE_???.seq > $TFILE
     19ls $SEQDIR/${DATE}_???.seq > $TFILE
    2020
    2121while read LINE

  • branches/Mars_McMismatchStudy/qsub/FACT.sub_gan_data.sh

    r17983 r17984  
    1919do
    2020
    21   NAME=`echo $LINE | gawk '{print $2}' | sed s/.root//g`
     21  NAME=`echo $LINE | gawk '{print $2}' | grep root | sed s/.root//g`
    2222  echo $LINE >  $NAME.list
    2323

  • branches/Mars_McMismatchStudy/qsub/FACT.sub_star_data.sh

    r17983 r17984  
    3636
    3737  ##qsub -q fact_medium -b yes -o $QSUBOUT -e $QSUBERR $QSUB
    38   qsub -q test -b yes -o $QSUBOUT -e $QSUBERR $QSUB
     38  ##qsub -q test -b yes -o $QSUBOUT -e $QSUBERR $QSUB
     39  qsub -b yes -o $QSUBOUT -e $QSUBERR $QSUB
    3940
    4041done <$INFILE
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