Changeset 17984 for branches/Mars_McMismatchStudy/qsub/FACT.qsub_star_data.sh

Timestamp:

10/20/14 12:46:57 (10 years ago)

Author:

ghughes

Message:

mixed some major bigs, removed hardcoded directory stuff, some minor testing still needed but batch full

File:

• branches/Mars_McMismatchStudy/qsub/FACT.qsub_star_data.sh (modified) (1 diff)

branches/Mars_McMismatchStudy/qsub/FACT.qsub_star_data.sh

@@ -13 +13 @@
 SEQDIR="/scratch/fact/sequences/"$YEAR"/"$MONTH"/"$DAY"/"
 INDIR="/scratch/fact/data.2013.05.11/callisto/"$YEAR"/"$MONTH"/"$DAY"/"
-OUTDIR="/home/guest/ghughes/FACT/Mars_McMismatchStudy/OUTPUT/star/"$DATE"/"
+OUTDIR=$MARSSYS"/OUTPUT/star/"$DATE"/"
 
-$TFILE=$MARSSYS"/"$DATE".tempfile"
+TFILE=${MARSSYS}"/"$DATE".tempfile"
 
-ls $SEQDIR/$DATE_???.seq > $TFILE
+ls $SEQDIR/${DATE}_???.seq > $TFILE
 
 while read LINE