Changeset 9054 for trunk/MagicSoft/Mars/datacenter/scripts/writesequencefiles

Timestamp:

07/30/08 16:31:01 (16 years ago)

Author:

Daniela Dorner

Message:

*** empty log message ***

File:

• trunk/MagicSoft/Mars/datacenter/scripts/writesequencefiles (modified) (2 diffs)

trunk/MagicSoft/Mars/datacenter/scripts/writesequencefiles

@@ -50 +50 @@
 
 # get todo list
-getdolist  >> $scriptlog 2>&1
-
-# get sequences from todo file
-sequences=(`cat $todofile`)
-if [ "$sequences" = "" ]
-then 
-   echo "nothing to do -> exit"  >> $scriptlog 2>&1
-   finish >> $scriptlog 2>&1
-fi
-echo "sequences: "${sequences[@]} >> $scriptlog 2>&1
-rm -v $todofile >> $scriptlog 2>&1
+gettodo  >> $scriptlog 2>&1
 
 cd $mars
 
-# write sequence file for all sequences in todo file
-for sequence in ${sequences[@]}
-do 
+# write sequence file for all sequences which don't have one yet
+for (( s=0 ; s < $num ; s++ ))
+do
+   sequence=${primaries[$s+$s]}
+   telnum=${primaries[$s+$s+1]}
    printprocesslog "INFO write sequence files for sequence $sequence"
    no=`printf %08d $sequence | cut -c 0-4`
@@ -78 +70 @@
 
    echo "write sequencefile for sequence $sequence" >> $scriptlog 2>&1
-   primvar=$no2
    setstatus "start" >> $scriptlog 2>&1
 
-   check2=`root -q -b $macrospath/writesequencefile.C\($sequence\,1\,"\"$sequpath\""\) | tee $writesequencefilelog | intgrep`
+   check2=`root -q -b $macrospath/writesequencefile.C\($sequence\,$telnum\,"\"$sequpath\""\) | tee $writesequencefilelog | intgrep`
    case $check2 in
       1)   echo " check2=$check2 -> everything ok " >> $scriptlog 2>&1