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source: tags/Mars-V0.9.2/mjobs/MJCalibrateSignal.cc

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Last change on this file was 7073, checked in by tbretz, 20 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	!
20	! Copyright: MAGIC Software Development, 2000-2004
21	!
22	!
23	\* ======================================================================== */
24
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibrateSignal
28	//
29	// This class is reading the output written by callisto. It calibrates
30	// signal and time.
31	//
32	// The signal and time extractors are read from the callisto-output. In
33	// pricipal you could overwrite these default using the resource file,
34	// but this is NOT recommended!
35	//
36	/////////////////////////////////////////////////////////////////////////////
37	#include "MJCalibrateSignal.h"
38
39	#include <TEnv.h>
40	#include <TFile.h>
41
42	#include "MLog.h"
43	#include "MLogManip.h"
44
45	#include "MDirIter.h"
46	#include "MRunIter.h"
47	#include "MParList.h"
48	#include "MTaskList.h"
49	#include "MEvtLoop.h"
50
51	#include "MStatusDisplay.h"
52
53	#include "MGeomCam.h"
54	#include "MHCamEvent.h"
55	//#include "MHCamEventTH.h"
56	#include "MPedestalCam.h"
57	#include "MBadPixelsCam.h"
58	#include "MArrivalTimeCam.h"
59
60	#include "MCalibrationQECam.h"
61	#include "MCalibrationBlindCam.h"
62	#include "MCalibrationChargeCam.h"
63	#include "MCalibrationRelTimeCam.h"
64	#include "MCalibrationChargePINDiode.h"
65	#include "MCalibrationHiLoCam.h"
66	#include "MCalibrationPulseTimeCam.h"
67	#include "MCalibrationPatternDecode.h"
68
69	#include "MCalibrationChargeCalc.h"
70	#include "MCalibrationRelTimeCalc.h"
71
72	#include "MCalibrationIntensityChargeCam.h"
73	#include "MCalibrationIntensityBlindCam.h"
74	#include "MCalibrationIntensityRelTimeCam.h"
75	#include "MCalibrationIntensityQECam.h"
76	#include "MBadPixelsIntensityCam.h"
77
78	#include "MHCalibrationChargeCam.h"
79	#include "MHCalibrationChargeBlindCam.h"
80	#include "MHCalibrationChargePINDiode.h"
81	#include "MHCalibrationRelTimeCam.h"
82	#include "MHCalibrationPulseTimeCam.h"
83	#include "MHCalibrationHiLoCam.h"
84	#include "MHCamera.h"
85
86	#include "MCalibCalcFromPast.h"
87
88	#include "MReadReports.h"
89	#include "MReadMarsFile.h"
90	#include "MRawFileRead.h"
91	#include "MContinue.h"
92	#include "MTriggerPatternDecode.h"
93	#include "MFTriggerPattern.h"
94	#include "MGeomApply.h"
95	//#include "MMcPedestalCopy.h"
96	#include "MPointingPosCalc.h"
97	#include "MPointingPosInterpolate.h"
98	#include "MPedCalcFromLoGain.h"
99	#include "MExtractor.h"
100	#include "MExtractTimeAndCharge.h"
101	#include "MExtractPINDiode.h"
102	#include "MExtractBlindPixel.h"
103	#include "MFCosmics.h"
104	#include "MTaskEnv.h"
105	#include "MCalibrateData.h"
106	#include "MCalibrateRelTimes.h"
107	#include "MBadPixelsMerge.h"
108	#include "MBadPixelsCalc.h"
109	#include "MBadPixelsTreat.h"
110	#include "MFillH.h"
111	#include "MWriteRootFile.h"
112
113	ClassImp(MJCalibrateSignal);
114
115	using namespace std;
116
117	// --------------------------------------------------------------------------
118	//
119	// Default constructor.
120	//
121	// Sets:
122	// - fIsInterlaced to kTRUE
123	// - fIsRelTimesUpdate to kFALSE
124	// - fIsHiLoCalibration to kFALSE
125	// - fPulsePosCheck to kTRUE
126	//
127	MJCalibrateSignal::MJCalibrateSignal(const char name, const char title)
128	: fExtractor(0), fIsInterlaced(kTRUE), fIsRelTimesUpdate(kFALSE)
129	{
130	fName = name ? name : "MJCalibrateSignal";
131	fTitle = title ? title : "Tool to calibrate data";
132
133	SetPulsePosCheck();
134	//fCruns = NULL;
135	}
136
137	MJCalibrateSignal::~MJCalibrateSignal()
138	{
139	if (fExtractor)
140	delete fExtractor;
141	}
142
143	void MJCalibrateSignal::SetExtractor(const MExtractor *ext)
144	{
145	if (fExtractor)
146	delete fExtractor;
147
148	fExtractor = ext ? (MExtractor*)ext->Clone() : NULL;
149	}
150
151	Bool_t MJCalibrateSignal::WriteResult(TObjArray &cont)
152	{
153	if (IsNoStorage())
154	return kTRUE;
155
156	const TString name(Form("signal%08d.root", fSequence.GetSequence()));
157	return WriteContainer(cont, name);
158	}
159
160	Bool_t MJCalibrateSignal::ReadCalibration(TObjArray &l, MBadPixelsCam &cam, MExtractor* &ext2, MExtractor* &ext3, TString &geom) const
161	{
162	TString fname = Form("%s/calib%08d.root", fPathIn.Data(), fSequence.GetSequence());
163
164	*fLog << inf << "Reading from file: " << fname << endl;
165
166	TFile file(fname, "READ");
167	if (!file.IsOpen())
168	{
169	*fLog << err << dbginf << "ERROR - Could not open file " << fname << endl;
170	return kFALSE;
171	}
172
173	TObject *o = file.Get("ExtractSignal");
174	if (o && !o->InheritsFrom(MExtractor::Class()))
175	{
176	*fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
177	return kFALSE;
178	}
179	ext3 = o ? (MExtractor*)o->Clone() : NULL;
180
181	o = file.Get("ExtractTime");
182	if (o && !o->InheritsFrom(MExtractor::Class()))
183	{
184	*fLog << err << dbginf << "ERROR - ExtractTime read from " << fname << " doesn't inherit from MExtractor!" << endl;
185	return kFALSE;
186	}
187	ext2 = o ? (MExtractor*)o->Clone() : NULL;
188	if (!ext3 && !ext2)
189	{
190	*fLog << err << dbginf << "ERROR - Neither ExtractSignal nor ExrtractTime found in " << fname << "!" << endl;
191	return kFALSE;
192	}
193
194	o = file.Get("MGeomCam");
195	if (o && !o->InheritsFrom(MGeomCam::Class()))
196	{
197	*fLog << err << dbginf << "ERROR - MGeomCam read from " << fname << " doesn't inherit from MGeomCam!" << endl;
198	return kFALSE;
199	}
200	geom = o ? o->ClassName() : "";
201
202	TObjArray cont(l);
203	cont.Add(&cam);
204	return ReadContainer(cont);
205	}
206
207	// --------------------------------------------------------------------------
208	//
209	// MJCalibration allows to setup several option by a resource file:
210	// MJCalibrateSignal.RawData: yes,no
211	//
212	// For more details see the class description and the corresponding Getters
213	//
214	Bool_t MJCalibrateSignal::CheckEnvLocal()
215	{
216	SetInterlaced(GetEnv("Interlaced", fIsInterlaced));
217	SetRelTimesUpdate(GetEnv("RelTimesUpdate", fIsRelTimesUpdate));
218
219	return MJCalib::CheckEnvLocal();
220	}
221
222	Bool_t MJCalibrateSignal::Process(MPedestalCam &pedcamab, MPedestalCam &pedcambias,
223	MPedestalCam &pedcamextr)
224	{
225	if (!fSequence.IsValid())
226	{
227	*fLog << err << "ERROR - Sequence invalid..." << endl;
228	return kFALSE;
229	}
230
231	*fLog << inf;
232	fLog->Separator(GetDescriptor());
233	*fLog << "Calculate calibrated data from Sequence #";
234	*fLog << fSequence.GetSequence() << endl << endl;
235
236
237	//if (!CheckEnv())
238	// return kFALSE;
239
240	CheckEnv();
241
242	// --------------------------------------------------------------------------------
243
244	MDirIter iter;
245	if (fSequence.IsValid())
246	{
247	const Int_t n0 = fSequence.SetupDatRuns(iter, fPathData, IsUseRawData());
248	const Int_t n1 = fSequence.GetNumDatRuns();
249	if (n0==0)
250	{
251	*fLog << err << "ERROR - No input files of sequence found!" << endl;
252	return kFALSE;
253	}
254	if (n0!=n1)
255	{
256	*fLog << err << "ERROR - Number of files found (" << n0 << ") doesn't match number of files in sequence (" << n1 << ")" << endl;
257	if (fLog->GetDebugLevel()>4)
258	{
259	*fLog << dbg << "Files which are searched:" << endl;
260	iter.Print();
261	}
262	return kFALSE;
263	}
264	}
265
266	// Read File
267	MCalibrationIntensityChargeCam ichcam;
268	MCalibrationIntensityQECam iqecam;
269	MCalibrationIntensityBlindCam iblcam;
270	MCalibrationIntensityRelTimeCam itmcam;
271	MBadPixelsIntensityCam ibdcam;
272
273	MHCalibrationChargeCam hchacam;
274	MHCalibrationChargeBlindCam hbndcam;
275	MHCalibrationChargePINDiode hpndiod;
276	MHCalibrationRelTimeCam hrelcam;
277	MHCalibrationHiLoCam hilocam;
278	MHCalibrationPulseTimeCam hpulcam;
279
280	hchacam.SetOscillations(kFALSE);
281	hbndcam.SetOscillations(kFALSE);
282	hrelcam.SetOscillations(kFALSE);
283
284	MCalibrationChargeCam calcam;
285	MCalibrationQECam qecam;
286	MCalibrationBlindCam bndcam;
287	MCalibrationChargePINDiode pind;
288	MCalibrationRelTimeCam tmcam;
289	MCalibrationHiLoCam hilcam;
290	MCalibrationPulseTimeCam pulcam;
291
292	MBadPixelsCam badpix;
293
294	TObjArray interlacedcont;
295	if (fIsInterlaced)
296	{
297	interlacedcont.Add(&ichcam);
298	interlacedcont.Add(&iqecam);
299	interlacedcont.Add(&iblcam);
300	interlacedcont.Add(&itmcam);
301	interlacedcont.Add(&ibdcam);
302	interlacedcont.Add(&hchacam);
303	if (IsUseBlindPixel())
304	interlacedcont.Add(&hbndcam);
305	if (IsUsePINDiode())
306	interlacedcont.Add(&hpndiod);
307	if (fIsRelTimesUpdate)
308	interlacedcont.Add(&hrelcam);
309	}
310
311	MExtractor *extractor1=fExtractor;
312	MExtractor *extractor2=0;
313	MExtractor *extractor3=0;
314	TString geom;
315
316	TObjArray calibcont;
317	calibcont.Add(&calcam);
318	calibcont.Add(&qecam);
319	calibcont.Add(&bndcam);
320	calibcont.Add(&pind);
321	calibcont.Add(&tmcam);
322
323	if (!ReadCalibration(calibcont, badpix, extractor2, extractor3, geom))
324	return kFALSE;
325
326	*fLog << all;
327	if (!geom.IsNull())
328	*fLog << inf << "Camera geometry found in file: " << geom << endl;
329	else
330	*fLog << inf << "No Camera geometry found using default <MGeomCamMagic>" << endl;
331
332	if (extractor3)
333	{
334	*fLog << underline << "Signal Extractor found in calibration file" << endl;
335	extractor3->Print();
336	*fLog << endl;
337	}
338	else
339	*fLog << inf << "No Signal Extractor: ExtractSignal in file." << endl;
340
341
342	if (extractor1)
343	{
344	*fLog << underline << "Modified Signal Extractor set by user." << endl;
345	extractor1->Print();
346	*fLog << endl;
347	}
348	else
349	{
350	*fLog << inf << "No modified Signal Extractor set by user... using ExtractSignal." << endl;
351	extractor1 = extractor3 ? (MExtractor*)extractor3->Clone() : 0;
352	}
353
354	if (extractor2)
355	{
356	*fLog << underline << "Time Extractor found in calibration file" << endl;
357	extractor2->Print();
358	*fLog << endl;
359	}
360	else
361	*fLog << inf << "No Time Extractor: ExtractTime in file." << endl;
362
363	// This is necessary for the case in which it is not in the files
364	MBadPixelsCam badcam;
365
366	// Setup Parlist
367	MParList plist;
368	plist.AddToList(this); // take care of fDisplay!
369	plist.AddToList(&badcam);
370	plist.AddToList(&hilcam);
371	plist.AddToList(&calibcont); // Using AddToList(TObjArray *)
372	plist.AddToList(&interlacedcont); // Using AddToList(TObjArray *)
373	plist.AddToList(&pulcam);
374
375	// Setup Tasklist
376	MTaskList tlist;
377	plist.AddToList(&tlist);
378
379	MReadReports readreal;
380	readreal.AddTree("Events", "MTime.", kTRUE);
381	readreal.AddTree("Trigger");
382	readreal.AddTree("Camera");
383	readreal.AddTree("Drive");
384	readreal.AddTree("CC");
385	readreal.AddTree("Currents");
386
387	MReadMarsFile readmc("Events");
388	readmc.DisableAutoScheme();
389
390	MRawFileRead rawread(NULL);
391
392	MRead *read = 0;
393	switch (GetDataFlag())
394	{
395	case kIsUseRawData: read = &rawread; break;
396	case kIsUseMC: read = &readmc; break;
397	case kIsUseRootData: read = &readreal; break;
398	}
399	read->AddFiles(iter);
400
401	const TString fname(Form("%s{s/_D_/_Y_}{s/.raw$/.root}", fPathOut.Data()));
402
403
404	// Skips MC which have no contents. This are precisely the
405	// events which fullfilled the MC Lvl1 trigger and an
406	// arbitrary cut (typically at 50phe) to speed up simulation
407	MContinue contmc("MRawEvtData.GetNumPixels<0.5", "ContEmptyMC");
408
409	MPointingPosInterpolate pextr;
410	pextr.AddFiles(&iter);
411
412	MGeomApply apply; // Only necessary to create geometry
413	if (!geom.IsNull())
414	apply.SetGeometry(geom);
415	MBadPixelsMerge merge(&badpix);
416
417	// Make sure that pedcamab has the correct name
418	pedcamab.SetName("MPedestalFundamental");
419	pedcamextr.SetName("MPedestalFromExtractorRndm");
420	pedcambias.SetName("MPedestalFromExtractor");
421	plist.AddToList(&pedcamextr);
422	plist.AddToList(&pedcambias);
423	plist.AddToList(&pedcamab);
424
425	MArrivalTimeCam timecam;
426	plist.AddToList(&timecam);
427
428	// Check for interleaved events
429	MCalibrationPatternDecode caldec;
430	MTriggerPatternDecode decode;
431
432	// This will make that for data with version less than 5, where
433	// trigger patterns were not yet correct, all the events in the real
434	// data file will be processed. In any case there are no interleaved
435	// calibration events in such data, so this is fine.
436	MFTriggerPattern ftp;
437	ftp.SetDefault(kTRUE);
438	// ftp.RequireCalibration();
439	ftp.DenyCalibration();
440	ftp.DenyPedestal();
441	// ftp.DenyPinDiode();
442	ftp.SetInverted();
443
444	// This will skip interleaved calibration events and pedestal events (if any)
445	// --> tlist2
446	MContinue conttp(&ftp, "ContTrigPattern");
447
448	// Do signal and pedestal calculation
449	MPedCalcFromLoGain pedlo1("MPedCalcFundamental");
450	pedlo1.SetPedestalUpdate(kTRUE);
451	pedlo1.SetNamePedestalCamOut("MPedestalFundamental");
452
453	MPedCalcFromLoGain pedlo2("MPedCalcWithExtractorRndm");
454	pedlo2.SetPedestalUpdate(kTRUE);
455	pedlo2.SetRandomCalculation(kTRUE);
456	pedlo2.SetNamePedestalCamIn("MPedestalFundamental");
457	pedlo2.SetNamePedestalCamOut("MPedestalFromExtractorRndm");
458
459	MPedCalcFromLoGain pedlo3("MPedCalcWithExtractor");
460	pedlo3.SetPedestalUpdate(kTRUE);
461	pedlo3.SetRandomCalculation(kFALSE);
462	pedlo3.SetNamePedestalCamIn("MPedestalFundamental");
463	pedlo3.SetNamePedestalCamOut("MPedestalFromExtractor");
464
465	if (extractor1)
466	{
467	extractor1->SetPedestals(&pedcamab);
468
469	if (extractor1->InheritsFrom("MExtractTimeAndCharge"))
470	{
471	pedlo2.SetExtractor((MExtractTimeAndCharge*)extractor1);
472	pedlo3.SetExtractor((MExtractTimeAndCharge*)extractor1);
473	const Int_t win = ((MExtractTimeAndCharge*)extractor1)->GetWindowSizeHiGain();
474	pedlo1.SetExtractWindow(15, win);
475	pedlo2.SetExtractWindow(15, win/obsolete/);
476	pedlo3.SetExtractWindow(15, win/obsolete/);
477	}
478	else
479	{
480	// FIXME: How to get the fixed value 15 automatically?
481	const Int_t f = (Int_t)(15.5+extractor1->GetHiGainFirst());
482	const Int_t n = (Int_t)(15.5+extractor1->GetNumHiGainSamples());
483	pedlo1.SetExtractWindow(f, n);
484	pedlo2.SetExtractWindow(f, n);
485	pedlo3.SetExtractWindow(f, n);
486	}
487	}
488	if (extractor2)
489	extractor2->SetPedestals(&pedcamab);
490
491	if (extractor3)
492	extractor3->SetPedestals(&pedcamab);
493
494	MFCosmics fcosmics;
495	fcosmics.SetNamePedestalCam("MPedestalFundamental");
496	MContinue contcos(&fcosmics, "ContTrigEvts");
497	contcos.SetInverted();
498
499	//MMcPedestalCopy pcopy;
500	MTaskEnv taskenv1("ExtractSignal");
501	MTaskEnv taskenv2("ExtractTime");
502	MTaskEnv taskenv3("ExtractInterlaced");
503	taskenv1.SetDefault(extractor1);
504	taskenv2.SetDefault(extractor2);
505	taskenv3.SetDefault(extractor3);
506
507	//
508	// This is new calibration to photo-electrons, hard-coded
509	// as decided at the Wuerzburg software meeting 26.01.05
510	//
511	MCalibrateData calib;
512	calib.SetSignalType(MCalibrateData::kPhe);
513	calib.AddPedestal("Fundamental");
514	calib.AddPedestal("FromExtractor");
515	calib.AddPedestal("FromExtractorRndm");
516	calib.SetPedestalFlag(MCalibrateData::kEvent);
517	//----------------------------------------------------------
518
519	MExtractPINDiode pinext;
520	MExtractBlindPixel bldext;
521
522	MFTriggerPattern fcalib("CalibFilter");
523	fcalib.SetDefault(kFALSE);
524	fcalib.RequireCalibration();
525
526	MCalibrationChargeCalc chcalc;
527	MCalibrationRelTimeCalc recalc;
528	MCalibCalcFromPast pacalc;
529	chcalc.SetOutputFile("");
530	recalc.SetOutputFile("");
531
532	pinext.SetPedestals(&pedcamab);
533	bldext.SetPedestals(&pedcamab);
534	chcalc.SetPedestals(&pedcamextr);
535
536	pacalc.SetChargeCalc(&chcalc);
537	if (fIsRelTimesUpdate)
538	pacalc.SetRelTimeCalc(&recalc);
539	pacalc.SetCalibrate(&calib);
540
541	//
542	// Intensity Calibration histogramming
543	//
544	MFillH filpin(&hpndiod, "MExtractedSignalPINDiode", "FillPINDiode");
545	MFillH filbnd(&hbndcam, "MExtractedSignalBlindPixel", "FillBlindCam");
546	MFillH filcam(&hchacam, "MExtractedSignalCam", "FillChargeCam");
547	MFillH filtme(&hrelcam, "MArrivalTimeCam", "FillRelTime");
548	MFillH filhil(&hilocam, "MExtractedSignalCam", "FillHiLoRatio");
549	MFillH filpul(&hpulcam, "MRawEvtData", "FillPulseTime");
550	filpin.SetBit(MFillH::kDoNotDisplay);
551	filbnd.SetBit(MFillH::kDoNotDisplay);
552	filcam.SetBit(MFillH::kDoNotDisplay);
553	filtme.SetBit(MFillH::kDoNotDisplay);
554	filhil.SetBit(MFillH::kDoNotDisplay);
555	filpul.SetBit(MFillH::kDoNotDisplay);
556
557	MCalibrateRelTimes caltm;
558	MBadPixelsCalc bpcal;
559	MBadPixelsTreat treat;
560
561	bpcal.SetNamePedPhotCam("MPedPhotFromExtractor");
562	treat.AddNamePedPhotCam("MPedPhotFundamental");
563	treat.AddNamePedPhotCam("MPedPhotFromExtractor");
564	treat.AddNamePedPhotCam("MPedPhotFromExtractorRndm");
565	if (!extractor2 && !extractor1->InheritsFrom("MExtractTimeAndCharge"))
566	treat.SetProcessTimes(kFALSE);
567
568	MHCamEvent evt0( 0, "PedFLG", "Fundamental Pedestal from Lo Gain;;P [cnts/sl]");
569	MHCamEvent evt1( 2, "PedRmsFLG", "RMS from Extractor applied to ped.;;\\sigma_{p} [cnts/sl]");
570	MHCamEvent evt2( 0, "Extra'd", "Extracted Signal;;S [cnts/sl]");
571	// MHCamEvent evt3(4, "PedPhot", "Calibrated Pedestal;;P [phe]");
572	MHCamEvent evt4( 5, "PedRMS", "Calibrated RMS from Extractor applied to ped.;;\\sigma_{p} [phe]");
573	MHCamEvent evt5( 0, "Interp'd", "Interpolated Signal;;S [phe]");
574	MHCamEvent evt6(102, "Unsuitable", "Fraction of unsuitable events per Pixel;;[1]");
575	MHCamEvent evt7( 6, "Times", "Calibrated Arrival Time;;T [fadc sl]");
576	MHCamEvent evt8( 0, "Conv", "Calibration Conv. Factors;;[phe/fadc cnts]");
577	MHCamEvent evt9( 7, "PulsePos", "Pulse Position of cosmics (>15phe);;T"); //Calibration Conv. Factors;;[phe/fadc cnts]
578	evt6.SetThreshold();
579
580	MFillH fill0(&evt0, "MPedestalFundamental", "FillPedFLG");
581	MFillH fill1(&evt1, "MPedestalFromExtractorRndm", "FillPedRmsFLG");
582	MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtracted");
583	// MFillH fill3(&evt3, "MPedPhotFundamental", "FillPedPhot");
584	MFillH fill4(&evt4, "MPedPhotFromExtractorRndm", "FillPedRMS");
585	MFillH fill5(&evt5, "MSignalCam", "FillInterpolated");
586	MFillH fill6(&evt6, "MBadPixelsCam", "FillUnsuitable");
587	MFillH fill7(&evt7, "MSignalCam", "FillTimes");
588	MFillH fill8(&evt8, "MCalibConstCam", "FillConv");
589	MFillH fill9(&evt9, "MSignalCam", "FillPulse");
590
591	MTaskEnv fillflorian("FinalFantasy");
592	fillflorian.SetDefault();
593
594	// The second rule is for the case reading raw-files!
595	MWriteRootFile write(2, fname, fOverwrite?"RECREATE":"NEW");
596	// Run Header
597	write.AddContainer("MRawRunHeader", "RunHeaders");
598	write.AddContainer("MBadPixelsCam", "RunHeaders");
599	write.AddContainer("MGeomCam", "RunHeaders");
600	// Monte Carlo Headers
601	write.AddContainer("MMcRunHeader", "RunHeaders", kFALSE);
602	write.AddContainer("MMcFadcHeader", "RunHeaders", kFALSE);
603	write.AddContainer("MMcTrigHeader", "RunHeaders", kFALSE);
604	write.AddContainer("MMcConfigRunHeader", "RunHeaders", kFALSE);
605	write.AddContainer("MMcCorsikaRunHeader", "RunHeaders", kFALSE);
606	// Monte Carlo
607	write.AddContainer("MMcEvt", "Events", kFALSE);
608	write.AddContainer("MMcTrig", "Events", kFALSE);
609	// Data tree
610	write.AddContainer("MSignalCam", "Events");
611	write.AddContainer("MPedPhotFundamental", "Events");
612	write.AddContainer("MPedPhotFromExtractor", "Events");
613	write.AddContainer("MPedPhotFromExtractorRndm", "Events");
614	write.AddContainer("MTime", "Events", kFALSE);
615	write.AddContainer("MRawEvtHeader", "Events");
616	//write.AddContainer("MArrivalTime", "Events", kFALSE);
617	//write.AddContainer("MPointingPos", "Events", kFALSE);
618	// Slow-Control: Current-tree
619	write.AddContainer("MTimeCurrents", "Currents", kFALSE);
620	write.AddContainer("MCameraDC", "Currents", kFALSE);
621	write.AddContainer("MReportCurrents", "Currents", kFALSE);
622	// Slow-Control: Camera-tree
623	write.AddContainer("MReportCamera", "Camera", kFALSE);
624	write.AddContainer("MTimeCamera", "Camera", kFALSE);
625	write.AddContainer("MCameraAUX", "Camera", kFALSE);
626	write.AddContainer("MCameraCalibration", "Camera", kFALSE);
627	write.AddContainer("MCameraCooling", "Camera", kFALSE);
628	write.AddContainer("MCameraHV", "Camera", kFALSE);
629	write.AddContainer("MCameraLV", "Camera", kFALSE);
630	write.AddContainer("MCameraLids", "Camera", kFALSE);
631	// Slow-Control: Trigger-tree
632	write.AddContainer("MReportTrigger", "Trigger", kFALSE);
633	write.AddContainer("MTimeTrigger", "Trigger", kFALSE);
634	// Slow-Control: Drive-tree
635	write.AddContainer("MReportDrive", "Drive", kFALSE);
636	write.AddContainer("MTimeDrive", "Drive", kFALSE);
637	// Slow-Control: Central Control-tree
638	write.AddContainer("MReportCC", "CC", kFALSE);
639	write.AddContainer("MTimeCC", "CC", kFALSE);
640
641	// Write the special MC tree
642	MWriteRootFile writemc(2, fname, fOverwrite?"RECREATE":"NEW");
643	writemc.SetName("WriteMC");
644	writemc.AddContainer("MMcEvtBasic", "OriginalMC");
645
646	// Now setup tasklist for events
647	MTaskList tlist2;
648
649	tlist2.AddToList(&caldec);
650	tlist2.AddToList(&decode);
651	tlist2.AddToList(&apply);
652	tlist2.AddToList(&merge);
653	tlist2.AddToList(&pedlo1);
654	tlist2.AddToList(&pedlo2);
655	tlist2.AddToList(&pedlo3);
656	//-----------------------------------------------------------
657
658	MTaskList tlist3;
659	tlist3.SetFilter(&fcalib);
660
661	if (fIsInterlaced)
662	{
663	tlist2.AddToList(&fcalib);
664	tlist2.AddToList(&tlist3);
665
666	if (IsUsePINDiode())
667	tlist3.AddToList(&pinext);
668	if (IsUseBlindPixel())
669	tlist3.AddToList(&bldext);
670	tlist3.AddToList(&taskenv3);
671	tlist3.AddToList(&pacalc);
672	tlist3.AddToList(&filcam);
673	if (fIsRelTimesUpdate)
674	tlist3.AddToList(&filtme);
675	if (IsUseBlindPixel())
676	tlist3.AddToList(&filbnd);
677	if (IsUsePINDiode())
678	tlist3.AddToList(&filpin);
679	tlist3.AddToList(&chcalc);
680	if (fIsRelTimesUpdate)
681	tlist3.AddToList(&recalc);
682	}
683
684	// Continue for all non-cosmic events
685	tlist2.AddToList(&conttp);
686	if (extractor1)
687	tlist2.AddToList(&taskenv1);
688	if (extractor2)
689	tlist2.AddToList(&taskenv2);
690	tlist2.AddToList(&fill0);
691	tlist2.AddToList(&fill1);
692	tlist2.AddToList(&contcos);
693	if (fIsHiLoCalibration)
694	{
695	plist.AddToList(&hilocam);
696	tlist2.AddToList(&filhil);
697	}
698	if (fIsPulsePosCheck)
699	{
700	plist.AddToList(&hpulcam);
701	tlist2.AddToList(&filpul);
702	}
703
704	tlist2.AddToList(&fill2);
705	tlist2.AddToList(&calib);
706	if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
707	tlist2.AddToList(&caltm);
708	if (fIsInterlaced)
709	tlist2.AddToList(&fill8);
710	tlist2.AddToList(&bpcal);
711	tlist2.AddToList(&treat);
712	tlist2.AddToList(&fill6);
713	// tlist2.AddToList(&fill3);
714	tlist2.AddToList(&fill4);
715	tlist2.AddToList(&fill5);
716	if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
717	tlist2.AddToList(&fill7);
718	tlist2.AddToList(&fill9);
719
720	tlist2.AddToList(&fillflorian);
721
722	// Setup List for Drive-tree
723	//MPointingPosCalc pcalc;
724
725	// Now setup main tasklist
726	tlist.AddToList(read);
727	if (IsUseMC())
728	{
729	tlist.AddToList(&writemc);
730	tlist.AddToList(&contmc);
731	}
732
733	if (IsUseRootData())
734	tlist2.AddToList(&pextr);
735	tlist.AddToList(&tlist2, IsUseRootData() ? "Events" : "All");
736
737	//if (IsUseMC())
738	// tlist.AddToList(&pcalc, "Drive");
739
740	tlist.AddToList(&write);
741
742	// Create and setup the eventloop
743	MEvtLoop evtloop(fName);
744	evtloop.SetParList(&plist);
745	evtloop.SetDisplay(fDisplay);
746	evtloop.SetLogStream(fLog);
747	if (!SetupEnv(evtloop))
748	return kFALSE;
749
750	// Execute first analysis
751	const Bool_t rc = evtloop.Eventloop(fMaxEvents);
752
753	// make sure owned object are deleted
754	if (extractor1 && extractor1!=fExtractor)
755	delete extractor1;
756	if (extractor2)
757	delete extractor2;
758	if (extractor3)
759	delete extractor3;
760
761	// return if job failed
762	if (!rc)
763	{
764	*fLog << err << GetDescriptor() << ": Failed." << endl;
765	return kFALSE;
766	}
767
768	// if everything went ok write and display result
769	DisplayResult(plist);
770
771	if (fIsPixelCheck)
772	{
773	if (fIsPulsePosCheck)
774	hpulcam[fCheckedPixId].DrawClone("");
775
776	if (fIsHiLoCalibration)
777	hilocam[fCheckedPixId].DrawClone("");
778	}
779
780	interlacedcont.Add(&pulcam);
781
782	if (fIsHiLoCalibration)
783	interlacedcont.Add(&hilcam);
784
785	if (fIsPulsePosCheck)
786	interlacedcont.Add(plist.FindObject("MHCalibrationPulseTimeCam"));
787
788	if (fIsHiLoCalibration)
789	interlacedcont.Add(plist.FindObject("MHCalibrationHiLoCam"));
790
791	if (!WriteResult(interlacedcont))
792	return kFALSE;
793
794	// return if job went ok
795	*fLog << all << GetDescriptor() << ": Done." << endl;
796	*fLog << endl << endl;
797
798	return kTRUE;
799	}
800
801
802	void MJCalibrateSignal::DisplayResult(MParList &plist)
803	{
804	if (!fDisplay \|\| !fIsHiLoCalibration)
805	return;
806
807	MCalibrationHiLoCam hcam = (MCalibrationHiLoCam)plist.FindObject("MCalibrationHiLoCam");
808	MGeomCam geom = (MGeomCam)plist.FindObject("MGeomCam");
809	if (!hcam \|\| !geom)
810	return;
811
812	// Create histograms to display
813	MHCamera disp1(*geom, "HiLoConv", "Ratio Amplification HiGain vs. LoGain (Charges)");
814	MHCamera disp2(*geom, "HiLoDiff", "Arrival Time Diff. HiGain vs. LoGain (Times)");
815
816	disp1.SetCamContent(*hcam, 0);
817	disp1.SetCamError( *hcam, 1);
818	disp2.SetCamContent(*hcam, 5);
819	disp2.SetCamError( *hcam, 6);
820
821	disp1.SetYTitle("R [1]");
822	disp2.SetYTitle("\\Delta T [FADC sl.]");
823
824	TCanvas &c1 = fDisplay->AddTab("HiLoConv");
825	c1.Divide(2,3);
826
827	disp1.CamDraw(c1, 1, 2, 1);
828	disp2.CamDraw(c1, 2, 2, 1);
829	}
830

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