Changeset 7465 for trunk/MagicSoft/Mars/datacenter/scripts/runstar

Timestamp:

01/30/06 17:13:07 (19 years ago)

Author:

Daniela Dorner

Message:

*** empty log message ***

File:

• trunk/MagicSoft/Mars/datacenter/scripts/runstar (modified) (7 diffs)

trunk/MagicSoft/Mars/datacenter/scripts/runstar

@@ -38 +38 @@
 
 user=`whoami`
+program=star
 source /home/$user/Mars/datacenter/scripts/sourcefile
 
@@ -50 +51 @@
 
 todofile=$listpath/ToDo-$table-$column
-getstatuslogpath=$logpath/getstatus/star/$year
-getstatuslog=$getstatuslogpath/getstatus-star-$datetime.log
+getstatuslogpath=$logpath/getstatus/$program/$year
+getstatuslog=$getstatuslogpath/getstatus-$program-$datetime.log
 
-scriptlogpath=$logpath/run/star/`date +%Y/%m/%d`
+scriptlogpath=$logpath/run/$program/`date +%Y/%m/%d`
 makedir $scriptlogpath
-scriptlog=$scriptlogpath/runstar-$datetime.log
+scriptlog=$scriptlogpath/run$program-$datetime.log
 
 date >> $scriptlog 2>&1
@@ -64 +65 @@
 
 # check if getting of list is already running
-date > $lockpath/lock-getting-star-list.txt >> $scriptlog 2>&1
+date > $lockpath/lock-getting-$program-list.txt >> $scriptlog 2>&1
 checklock0=$?
 case $checklock0 in 
     0)   echo "checklock0=$checklock0 -> continue " >> $scriptlog 2>&1;;
     1)   echo "checklock0=$checklock0 -> file exists " >> $scriptlog 2>&1
-         echo "-> getting list for star is running -> exit" >> $scriptlog 2>&1
+         echo "-> getting list for $program is running -> exit" >> $scriptlog 2>&1
          date  >> $scriptlog 2>&1
          exit;;
@@ -86 +87 @@
    
    case $check0 in 
-       1)   echo "check0=$check0 -> everything ok -> run star" >> $scriptlog 2>&1;;
+       1)   echo "check0=$check0 -> everything ok -> run $program" >> $scriptlog 2>&1;;
        *)   echo "check0=$check0 -> ERROR -> step has to be repeated" >> $scriptlog 2>&1;;
    esac
 fi
 
-rm -v $lockpath/lock-getting-star-list.txt >> $scriptlog 2>&1
+rm -v $lockpath/lock-getting-$program-list.txt >> $scriptlog 2>&1
 
 # choosing todo file
@@ -124 +125 @@
 esac
 
-
 # retrieve sequence from todo file
 sequences=(`cat $todofile`)
@@ -142 +142 @@
   no=`printf %08d $sequence | cut -c 0-4`
   no2=`printf %08d $sequence`
-  outpath="$datapath/star/$no/$no2"
-  inpath=`echo $outpath | sed -e 's/star/callisto/'`
+  outpath="$datapath/$program/$no/$no2"
+  inpath=`echo $outpath | sed -e 's/$program/callisto/'`
   echo "inpath: "$inpath >> $scriptlog 2>&1
   echo "outpath: "$outpath >> $scriptlog 2>&1
@@ -151 +151 @@
   echo "sequfile: "$sequfile >> $scriptlog 2>&1
   
-  echo "run star..." >> $scriptlog 2>&1
-  ./star -b -q -v4 -f --log=$outpath/star$no2.log --html=$outpath/star$no2.html --ind=$inpath --out=$outpath $sequfile  2>> $scriptlog> /dev/null
+  echo "run $program..." >> $scriptlog 2>&1
+  ./star -b -q -v4 -f --log=$outpath/$program$no2.log --html=$outpath/$program$no2.html --ind=$inpath --out=$outpath $sequfile  2>> $scriptlog> /dev/null
   check1=$?
 
   case $check1 in
      0)   echo "check1=$check1 -> everything ok " >> $scriptlog 2>&1
-          echo "-> inserting the status for star for sequence $sequence into the db" >> $scriptlog 2>&1
-          setstatuslogpath=$logpath/setstatus/star/$no
-          makedir $setstatuslogpath >> $scriptlog 2>&1
-          setstatuslog=$setstatuslogpath/setstatus-star-$no2.log
-
-          check4=`root -q -b $macrospath/setstatus.C+\("\"$sequence\""\,"\"$table\""\,"\"$column\""\,"\"Now()\""\) | tee $setstatuslog | grep int | sed -e 's/(int)//'`
-          case $check4 in
-             1)   echo "check4=$check4 -> everything ok, status has been set" >> $scriptlog 2>&1;;
-             *)   echo "check4=$check4 -> ERROR -> step could not be set" >> $scriptlog 2>&1;;
-          esac
+          echo "inserting the status for $program for sequence $sequence into the db" >> $scriptlog 2>&1
+          statustime="Now()"
+          failed="NULL"
+          starttime="NULL"
+          failedtime="NULL"
+          var1=$no
+          var2=$no2
+          setstatus
           ;;
      *)   echo "check1=$check1 -> ERROR -> step has to be repeated" >> $scriptlog 2>&1;;