Changeset 7471 for trunk/MagicSoft/Mars/datacenter/scripts/writesequencefiles

Timestamp:

02/01/06 18:04:43 (19 years ago)

Author:

Daniela Dorner

Message:

*** empty log message ***

File:

• trunk/MagicSoft/Mars/datacenter/scripts/writesequencefiles (modified) (2 diffs)

trunk/MagicSoft/Mars/datacenter/scripts/writesequencefiles

@@ -104 +104 @@
    no=`printf %08d $sequence | cut -c 0-4`
    no2=`printf %08d $sequence`
+   var1=$no
+   var2=$no2
    sequencepath=$sequpath/$no
    makedir $sequencepath >> $scriptlog 2>&1
@@ -112 +114 @@
 
    echo "write sequencefile for sequence $sequence" >> $scriptlog 2>&1
+   setstatus "start" >> $scriptlog 2>&1
+
    check2=`root -q -b $macrospath/writesequencefile.C+\($sequence\,"\"$sequpath\""\) | tee $writesequencefilelogpath/writesequencefile-$no2.log | grep int | sed -e 's/(int)//'`
    case $check2 in
-      1)   echo "check2=$check2 -> everything ok " >> $scriptlog 2>&1
-           echo "-> inserting the status for $program for sequence $sequence into the db" >> $scriptlog 2>&1
-           statustime="Now()"
-           failed="NULL"
-           starttime="NULL"
-           failedtime="NULL"
-           var1=$no
-           var2=$no2
-           setstatus
-          ;;
+      1)   echo "check2=$check2 -> everything ok " >> $scriptlog 2>&1 ;;
       *)   echo "check2=$check2 -> ERROR -> step has to be repeated" >> $scriptlog 2>&1;;
+           com="writing of sequencefile for sequence $sequence failed"
+           check=$check2
+           ;;
    esac
+   echo "inserting the status for $program for sequence $sequence into the db" >> $scriptlog 2>&1
+   setstatus "stop" >> $scriptlog 2>&1
 done